genome.fa.s10.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  108  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36522260--36522422	92	1.8	87	81	9	202	34	19	15	30	1.93
36522352--36522654	49	6.5	46	77	6	290	34	21	17	26	1.95
36522357--36522654	95	3.2	92	79	7	266	34	20	18	26	1.96
36522309--36522757	44	10.0	44	75	8	350	33	20	17	28	1.96
36522309--36522757	139	3.3	136	83	6	504	33	20	17	28	1.96
36528074--36528147	37	2.0	36	87	10	105	45	0	9	44	1.36
36545026--36545057	14	2.4	14	94	5	57	21	6	0	71	1.07
36548234--36548291	22	2.6	23	81	8	66	34	22	24	18	1.96
36548233--36548323	23	4.0	22	77	9	78	36	19	23	20	1.95
36550786--36550820	17	2.1	17	88	0	52	22	2	2	71	1.13
36556138--36556175	3	12.3	3	84	15	51	65	0	2	31	1.06
36556138--36556175	11	3.1	12	88	11	51	65	0	2	31	1.06
36556138--36556175	14	2.7	14	91	0	58	65	0	2	31	1.06
36557667--36558075	50	8.2	50	75	5	378	24	19	22	33	1.97
36557647--36558061	100	4.2	100	86	3	557	24	19	21	34	1.96
36557647--36558096	150	3.0	149	74	8	419	25	19	21	33	1.97
36565951--36565991	3	14.3	3	85	10	59	65	0	0	34	0.93
36565951--36565991	17	2.4	17	88	8	57	65	0	0	34	0.93
36565951--36565992	14	3.0	14	92	0	66	64	0	0	35	0.94
36569745--36569805	30	2.0	30	93	0	104	31	9	19	39	1.84
36572784--36572874	43	2.1	43	87	4	130	17	15	28	38	1.90
36575528--36575605	36	2.2	36	95	0	138	35	8	16	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36576960--36577186	72	3.1	72	61	25	166	43	7	11	38	1.68
36576889--36577188	149	2.0	150	99	0	593	44	6	10	39	1.63
36585838--36585889	24	2.2	24	89	0	77	55	9	1	32	1.43
36587745--36587772	14	2.0	14	100	0	56	7	28	0	64	1.20
36587836--36587871	17	2.1	17	89	5	54	11	2	19	66	1.35
36587836--36587871	6	6.2	6	93	6	56	11	2	19	66	1.35
36589572--36589638	34	2.0	34	88	5	100	32	32	7	26	1.84
36590111--36590186	39	1.9	40	94	2	136	17	13	6	63	1.50
36590291--36590348	26	2.3	25	80	11	64	36	20	6	36	1.80
36595782--36596016	50	4.6	50	77	5	179	28	20	26	24	1.99
36611153--36611181	12	2.4	12	100	0	58	82	17	0	0	0.66
36612152--36612245	4	23.8	4	72	8	59	23	8	1	67	1.25
36612152--36612191	21	1.9	21	90	10	64	20	12	0	67	1.22
36612156--36612199	21	2.1	21	83	8	54	20	13	0	65	1.26
36612152--36612235	35	2.6	31	80	14	91	23	9	1	65	1.29
36615543--36615605	5	12.8	5	75	9	58	79	1	14	4	0.97
36615548--36615605	24	2.4	25	85	8	75	79	1	15	3	0.95
36615543--36615599	19	3.2	18	74	25	59	78	1	14	5	0.99
36616758--36617059	92	3.3	92	76	11	341	30	19	21	28	1.97
36616432--36616919	137	3.6	137	75	6	484	32	18	20	28	1.96
36616437--36617286	44	18.8	45	68	13	300	32	18	20	27	1.97
36616722--36617056	181	1.9	181	93	0	580	30	19	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36617198--36617272	37	2.0	37	86	0	105	30	22	22	24	1.99
36622198--36622250	28	1.9	28	85	11	74	18	1	5	73	1.12
36636232--36636281	26	2.0	25	84	11	66	20	2	6	72	1.16
36637098--36637134	19	1.9	19	94	0	65	21	10	5	62	1.48
36641392--36641443	23	2.3	23	86	0	77	34	25	21	19	1.96
36641329--36641563	114	2.1	114	97	0	443	34	23	19	22	1.96
36641507--36641559	23	2.3	23	96	0	97	30	28	20	20	1.98
36641785--36641823	18	2.2	17	86	13	53	46	20	0	33	1.51
36655552--36655591	20	2.0	20	90	0	62	27	10	12	50	1.72
36655537--36655603	34	1.9	35	90	3	109	31	8	13	46	1.74
36655531--36655607	14	5.0	15	71	20	52	33	9	14	42	1.77
36656209--36656258	23	2.2	23	85	7	66	26	2	6	66	1.26
36666431--36666622	72	2.7	72	94	0	330	21	5	16	55	1.62
36671018--36671056	21	1.9	20	85	15	53	43	5	20	30	1.73
36671661--36671698	13	3.0	13	92	3	60	39	28	10	21	1.86
36672131--36672171	22	1.9	22	85	5	57	31	12	7	48	1.68
36677522--36677551	14	2.1	14	93	0	51	20	13	20	46	1.83
36682994--36683044	20	2.6	20	81	9	61	41	11	11	35	1.78
36688645--36688715	35	2.0	35	94	0	124	26	12	32	28	1.93
36693925--36694032	55	2.0	55	90	3	173	22	12	13	51	1.74
36696733--36696769	9	4.1	9	89	0	56	29	8	13	48	1.71
36696822--36696852	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36711037--36711074	19	2.0	19	100	0	76	21	5	42	31	1.75
36715759--36715792	14	2.6	13	86	13	52	55	0	0	44	0.99
36719577--36719641	13	4.7	13	72	20	51	32	1	1	64	1.12
36723492--36723598	53	2.0	53	92	0	178	38	18	10	32	1.85
36724581--36724635	28	2.0	28	82	13	69	41	1	5	50	1.36
36730689--36730858	81	2.1	81	98	0	331	22	28	15	32	1.95
36742172--36742197	6	4.3	6	100	0	52	84	0	0	15	0.62
36743893--36743936	17	2.5	18	82	14	56	65	9	0	25	1.21
36743899--36743936	8	4.8	8	81	12	51	65	7	0	26	1.19
36743893--36743943	18	2.9	16	85	11	57	64	7	1	25	1.31
36744855--36745066	115	1.8	115	81	4	266	27	24	23	25	2.00
36749268--36749329	26	2.4	26	91	5	99	29	11	33	25	1.91
36749279--36749331	26	2.0	26	100	0	106	26	16	30	26	1.97
36755092--36755153	31	2.0	30	84	3	79	43	3	3	50	1.34
36758854--36758915	31	2.0	30	84	3	79	43	3	3	50	1.34
36761118--36762488	468	2.9	465	82	2	1610	30	9	27	32	1.89
36762643--36762758	57	2.0	57	89	0	178	38	14	9	37	1.79
36774904--36774944	23	1.9	21	85	14	57	21	4	4	68	1.28
36781088--36781478	138	2.8	137	80	1	424	33	16	21	28	1.95
36781295--36781465	94	1.8	94	83	2	227	35	18	18	28	1.94
36781332--36781982	94	6.9	94	80	3	621	33	18	19	27	1.96
36781488--36781976	187	2.6	189	84	2	610	33	19	19	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36781288--36781857	44	12.3	44	67	17	163	33	18	19	28	1.96
36781056--36781857	44	17.3	44	65	19	150	33	17	20	28	1.95
36781313--36781993	282	2.4	282	78	7	736	33	18	20	27	1.96
36781916--36782030	50	2.3	50	100	0	230	30	20	20	27	1.98
36781808--36782122	144	2.2	145	80	5	350	34	20	18	26	1.96
36789565--36789593	3	9.7	3	100	0	58	65	0	34	0	0.93
36792729--36792761	11	3.1	11	91	4	50	81	0	0	18	0.68
36802897--36802946	24	2.1	24	100	0	100	50	12	12	26	1.74
36805374--36805416	18	2.4	18	84	0	59	32	2	2	62	1.20
36806804--36806872	32	2.2	32	86	2	95	56	2	4	36	1.34
36807442--36807480	17	2.3	17	81	0	51	69	0	2	28	1.02
36807431--36807480	25	2.0	26	81	14	61	68	0	2	30	1.01
36818583--36818652	25	2.8	25	80	6	72	15	22	20	41	1.90
36818635--36818720	25	3.4	24	76	19	86	19	22	20	37	1.95
36818769--36818827	25	2.4	25	88	0	82	25	18	20	35	1.95
36822530--36822582	21	2.5	21	84	0	61	35	20	41	1	1.64
36822896--36822993	43	2.2	44	85	1	135	33	23	16	26	1.95
36824422--36824466	23	2.0	23	90	0	72	57	28	0	13	1.36
36831472--36831515	22	2.0	22	86	4	61	38	18	27	15	1.91
36833283--36833381	51	1.9	51	87	4	146	25	30	1	43	1.61
36833283--36833365	11	7.8	11	70	21	52	25	30	1	43	1.62
36836284--36836313	7	4.3	7	100	0	60	46	40	0	13	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36843739--36843775	15	2.3	17	86	9	51	16	2	2	78	0.98
36843741--36843805	26	2.3	26	82	10	76	15	3	4	76	1.07
36845511--36845554	5	8.8	5	94	0	79	0	61	2	36	1.09
36866433--36866474	19	2.2	19	86	4	57	23	11	30	33	1.91
36874104--36874236	66	2.0	67	98	1	259	39	11	18	31	1.86
36879134--36879162	13	2.1	14	93	6	51	58	0	6	34	1.25
36879237--36879271	18	1.9	18	88	0	52	45	5	0	48	1.26
36880911--36880939	13	2.1	14	93	6	51	58	0	6	34	1.25
36881014--36881048	18	1.9	18	88	0	52	45	5	0	48	1.26
36885513--36885557	18	2.5	20	82	17	62	37	17	4	40	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136