Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 108 of 136
Found at i:36522391 original size:92 final size:87
Alignment explanation
Indices: 36522260--36522422 Score: 202
Period size: 92 Copynumber: 1.8 Consensus size: 87
36522250 CTGAAGATAG
* * ** * *
36522260 CAAATCTTATTTCCCTGAAGTTGCGATGGAGTAGATTAAAGCTATAAATTACAAATCTTATCTCT
1 CAAACCTTATCTCCCTGAAGTTGCGATGGAACAGATTAAA--AAT-AA--ACAAATCTTATCTCC
36522325 CTGAAGTTGCAGTAGAGCATATCATAT
61 CTGAAGTTGCAGTAGAGCATATCATAT
*
36522352 CAAACCTTATCTCCCTGAAGTTGC-AGTGGAACAGGTTAAAAATAAACAAATCTTATCTCCCTGA
1 CAAACCTTATCTCCCTGAAGTTGCGA-TGGAACAGATTAAAAATAAACAAATCTTATCTCCCTGA
36522416 AGTTGCA
65 AGTTGCA
36522423 ATGGAACAGA
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
87 25 0.40
89 2 0.03
90 2 0.03
91 1 0.02
92 33 0.52
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (87 bp):
CAAACCTTATCTCCCTGAAGTTGCGATGGAACAGATTAAAAATAAACAAATCTTATCTCCCTGAA
GTTGCAGTAGAGCATATCATAT
Found at i:36522468 original size:49 final size:46
Alignment explanation
Indices: 36522352--36522654 Score: 290
Period size: 49 Copynumber: 6.5 Consensus size: 46
36522342 CATATCATAT
* * ***
36522352 CAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAAGCCA
* *
36522398 CAAATCTTATCTCCCTGAAGTTGCAATGGAACAGATTGAAGACAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATT-AA-A-AAGCCA
* * *
36522447 CATATCTTATCTCCCTGAAGTTGCAGTGAAATAGATT--AAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAAGCCA
* * * ***
36522491 CAAACCTTATCTCCCTGAAGTTACAGTGGAACAGGTTAAAAATAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAAGCCA
* * * * ** *
36522537 CCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATGGGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATT-AA-A-AAGCCA
* *
36522586 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATT--AAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAAGCCA
*
36522630 CAAACCTTATCTCCCTGAAGTTGCA
1 CAAATCTTATCTCCCTGAAGTTGCA
36522655 TTAGAGCAGG
Statistics
Matches: 208, Mismatches: 41, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
44 62 0.30
45 2 0.01
46 68 0.33
47 4 0.02
48 2 0.01
49 70 0.34
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (46 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAAGCCA
Found at i:36522605 original size:95 final size:92
Alignment explanation
Indices: 36522357--36522654 Score: 266
Period size: 95 Copynumber: 3.2 Consensus size: 92
36522347 CATATCAAAC
* ** *** *
36522357 CTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACAAATCTTATCTCCCTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGAAACAAATT--AAAGCCACAAATCTTATCTCCCTGAAGTTAC
* * * *
36522422 AATGGAACAGATTGAAGACAAGCTACATAT
64 AGTGGAACAGATTAAAAACAAAC-ACATAT
* * *
36522452 CTTATCTCCCTGAAGTTGCAGTGAAATAGATTAAAGCCACAAACCTTATCTCCCTGAAGTTACAG
1 CTTATCTCCCTGAAGTTGCAGTGAAACAAATTAAAGCCACAAATCTTATCTCCCTGAAGTTACAG
* *
36522517 TGGAACAGGTTAAAAATAAAC-CA-AT
66 TGGAACAGATTAAAAACAAACACATAT
* * * *
36522542 CTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATGGGCTACAAATCTTATCTCCCTGAAGT
1 CTTATCTCCCTGAAGTTGCAGTGAAACAAATT-AA-A---GCCACAAATCTTATCTCCCTGAAGT
* * * *
36522607 TACAGTGGAGCAGATT-AAAGC---CACAAAC
61 TACAGTGGAACAGATTAAAAACAAACACATAT
36522635 CTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCA
36522655 TTAGAGCAGG
Statistics
Matches: 169, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
90 29 0.17
91 5 0.03
92 3 0.02
93 63 0.37
94 3 0.02
95 66 0.39
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (92 bp):
CTTATCTCCCTGAAGTTGCAGTGAAACAAATTAAAGCCACAAATCTTATCTCCCTGAAGTTACAG
TGGAACAGATTAAAAACAAACACATAT
Found at i:36522662 original size:44 final size:44
Alignment explanation
Indices: 36522309--36522757 Score: 350
Period size: 44 Copynumber: 10.0 Consensus size: 44
36522299 AGCTATAAAT
* * * * *
36522309 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCATATCATA--
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
* * * **
36522351 T-CAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
* *
36522394 TAAACAAATCTTATCTCCCTGAAGTTGCAATGGAACAGATTGAAGACAAGC
1 T--ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT----A-AAGC
* * **
36522445 TACATATCTTATCTCCCTGAAGTTGCAGTGAAATAGATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
* * * * * **
36522489 CACAAACCTTATCTCCCTGAAGTTACAGTGGAACAGGTTAAAAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
* * *
36522533 TAAACCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATGGGC
1 T--ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-A---GC
*
36522584 TACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
* * * * * * *
36522628 CACAAACCTTATCTCCCTGAAGTTGCATTAGAGCAGGTTGAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
** * *
36522672 TACCTATCTTATCTCCCT-ACAGTTTCAGTGGAGCATATTAAAGC
1 TACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTAAAGC
* * *
36522716 TACTAAT-TCTATCTCCCTGAAGTTGCAGTGCAGCGGATTAAA
1 TACAAATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
36522758 ACGATGAATC
Statistics
Matches: 322, Mismatches: 65, Indels: 38
0.76 0.15 0.09
Matches are distributed among these distances:
41 32 0.10
42 1 0.00
43 3 0.01
44 140 0.43
45 2 0.01
46 65 0.20
47 3 0.01
48 3 0.01
49 68 0.21
50 1 0.00
51 4 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
Found at i:36522665 original size:139 final size:136
Alignment explanation
Indices: 36522309--36522757 Score: 504
Period size: 139 Copynumber: 3.3 Consensus size: 136
36522299 AGCTATAAAT
* * * * * *
36522309 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCATATCATA---TCAAACCTTATCTCCCTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAA
* * * * *
36522371 GTTGCAGTGGAACAGGTTAAAAATAAACAAATCTTATCTCCCTGAAGTTGCAATGGAACAGATTG
66 GTTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTG
36522436 AAGACAAGC
131 AAG---AGC
* * **
36522445 TACATATCTTATCTCCCTGAAGTTGCAGTGAAATAGATTAAAGCCACAAACCTTATCTCCCTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAA
*
36522510 GTTACAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTG
66 GTTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTG
36522575 AAGATGGGC
131 AAGA---GC
*
36522584 TACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAA
* * * * * * *
36522649 GTTGCATTAGAGCAGGTTGAAGAT--ACCTATCTTATCTCCCT-ACAGTT-TCAGTGGAGCATAT
66 GTTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGA-AGTTGT-AGTGGAGCAAAT
36522710 T-AA-AGC
129 TGAAGAGC
* * *
36522716 TACTAAT-TCTATCTCCCTGAAGTTGCAGTGCAGCGGATTAAA
1 TACAAATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
36522758 ACGATGAATC
Statistics
Matches: 271, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
131 1 0.00
132 38 0.14
135 1 0.00
136 38 0.14
137 32 0.12
139 161 0.59
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (136 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAA
GTTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTG
AAGAGC
Found at i:36528136 original size:37 final size:36
Alignment explanation
Indices: 36528074--36528147 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 36
36528064 TGGATGGCAT
*
36528074 TAATATGTATGTTATATATATGTTATA-ATAATAAA
1 TAATATGAATGTTATATATATGTTATATATAATAAA
36528109 TAATATGAAATGTGTATATATATGTTATATTATAATAAA
1 TAATATG-AATGT-TATATATATGTTATA-TATAATAAA
36528148 AACAAAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 7 0.21
36 4 0.12
37 15 0.44
39 8 0.24
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.45
Consensus pattern (36 bp):
TAATATGAATGTTATATATATGTTATATATAATAAA
Found at i:36545057 original size:13 final size:14
Alignment explanation
Indices: 36545026--36545057 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
36545016 TAGCCATTTT
36545026 TATTTTTCTTTTAA
1 TATTTTTCTTTTAA
36545040 TATTTTTCTTTTAA
1 TATTTTTCTTTTAA
36545054 -ATTT
1 TATTT
36545058 AATTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (14 bp):
TATTTTTCTTTTAA
Found at i:36548277 original size:22 final size:23
Alignment explanation
Indices: 36548234--36548291 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
36548224 CTGAGTTGGT
*
36548234 AAACGGTAAGCTCTATCAAGCT-
1 AAACGGTAAGCTCCATCAAGCTA
* *
36548256 GAACGGTAAGCTCCGT-AGAGCTA
1 AAACGGTAAGCTCCATCA-AGCTA
36548279 AAACGGTAAGCTC
1 AAACGGTAAGCTC
36548292 ATAAGAGTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 17 0.57
23 12 0.40
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (23 bp):
AAACGGTAAGCTCCATCAAGCTA
Found at i:36548298 original size:23 final size:22
Alignment explanation
Indices: 36548233--36548323 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 22
36548223 CCTGAGTTGG
*
36548233 TAAACGGTAAGCTCTATCA-AGC
1 TAAACGGTAAGCTC-ATAAGAGC
* *
36548255 TGAACGGTAAGCTCCGT-AGAGC
1 TAAACGGTAAGCT-CATAAGAGC
*
36548277 TAAAACGGTAAGCTCATAAGAGT
1 T-AAACGGTAAGCTCATAAGAGC
* *
36548300 TGAAACGATAAGCTCATACGAGC
1 T-AAACGGTAAGCTCATAAGAGC
36548323 T
1 T
36548324 GTGGTGGGTC
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.02
22 19 0.34
23 36 0.64
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (22 bp):
TAAACGGTAAGCTCATAAGAGC
Found at i:36550808 original size:17 final size:17
Alignment explanation
Indices: 36550786--36550820 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
36550776 GACCATGTTA
36550786 TAATTTCTTTGATATTT
1 TAATTTCTTTGATATTT
* *
36550803 TAATTTTTTTTATATTT
1 TAATTTCTTTGATATTT
36550820 T
1 T
36550821 TCAAAAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (17 bp):
TAATTTCTTTGATATTT
Found at i:36556146 original size:3 final size:3
Alignment explanation
Indices: 36556138--36556175 Score: 51
Period size: 3 Copynumber: 12.3 Consensus size: 3
36556128 ATAAGGAAAC
36556138 AAT AAT AAT AA- AAT AAT AAT AAT AGATT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT A
36556176 TTAAACTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 2 0.06
3 26 0.81
4 2 0.06
5 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36556152 original size:11 final size:12
Alignment explanation
Indices: 36556138--36556175 Score: 51
Period size: 11 Copynumber: 3.1 Consensus size: 12
36556128 ATAAGGAAAC
36556138 AATAATAATAA-
1 AATAATAATAAT
36556149 AATAATAATAAT
1 AATAATAATAAT
36556161 AGATTAATAATAAT
1 A-A-TAATAATAAT
36556175 A
1 A
36556176 TTAAACTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 1 0.04
13 1 0.04
14 11 0.46
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (12 bp):
AATAATAATAAT
Found at i:36556155 original size:14 final size:14
Alignment explanation
Indices: 36556138--36556175 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
36556128 ATAAGGAAAC
36556138 AATAATAATAAAAT
1 AATAATAATAAAAT
* *
36556152 AATAATAATAGATT
1 AATAATAATAAAAT
36556166 AATAATAATA
1 AATAATAATA
36556176 TTAAACTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
AATAATAATAAAAT
Found at i:36557722 original size:50 final size:50
Alignment explanation
Indices: 36557667--36558075 Score: 378
Period size: 50 Copynumber: 8.2 Consensus size: 50
36557657 AACTTATTTA
*
36557667 ACTGCAATGTTGGGGAAGCAAGATTCGCAGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* ** * * * **
36557717 ACTGCACTACCT-GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTT
1 ACTGCAAT-GTTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * **
36557767 ACTGCAATGTCGGGGAAGCAAGATTCACCATTGTAGCTTCAAT-TAGTTCC
1 ACTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCT-GTTCC
* * * * * * **
36557817 ACTGCACTGCCT-AGGAAGTAAGATTCGCTATTGTAGCTTCAATCTTTTTA
1 ACTGCAATG-TTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* *
36557867 ACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCC
1 ACTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * * * * **
36557917 ATTGTACT-TCCT-GGGAAGTAAGATTCGCTGTTGTAGCTTCATTATTTTTA
1 ACTGCAATGT--TGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * *
36557967 ACTACAATGTTGGGGAAGCAAGATTCACCGTTGTAGCTTCAACCTGTTCC
1 ACTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * *
36558017 ACTGTAATATGGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
*
36558067 ACTGTAATG
1 ACTGCAATG
36558076 CCAAAGAGAT
Statistics
Matches: 278, Mismatches: 71, Indels: 20
0.75 0.19 0.05
Matches are distributed among these distances:
49 3 0.01
50 272 0.98
51 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (50 bp):
ACTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
Found at i:36557787 original size:100 final size:100
Alignment explanation
Indices: 36557647--36558061 Score: 557
Period size: 100 Copynumber: 4.2 Consensus size: 100
36557637 GAGATAAGAC
*
36557647 TTGTAGCTTCAA-CTTATTTAACTGCAATGTTGGGGAAGCAAGATTCGCAGTTGTAGCTTCAATC
1 TTGTAGCTTCAATCTT-TTTAACTGCAATGTCGGGGAAGCAAGATTCGCAGTTGTAGCTTCAATC
36557711 TGTTCCACTGCACTACCTGGGAAGTAAGATTCGCTG
65 TGTTCCACTGCACTACCTGGGAAGTAAGATTCGCTG
* * *
36557747 TTGTAGCTTTAATCTTTTTTACTGCAATGTCGGGGAAGCAAGATTCACCA-TTGTAGCTTCAAT-
1 TTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC-GCAGTTGTAGCTTCAATC
* * *
36557810 TAGTTCCACTGCACTGCCTAGGAAGTAAGATTCGCTA
65 T-GTTCCACTGCACTACCTGGGAAGTAAGATTCGCTG
*
36557847 TTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCT
1 TTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCAGTTGTAGCTTCAATCT
* * * *
36557912 ATTCCATTGTACTTCCTGGGAAGTAAGATTCGCTG
66 GTTCCACTGCACTACCTGGGAAGTAAGATTCGCTG
* * * * * * *
36557947 TTGTAGCTTCATTATTTTTAACTACAATGTTGGGGAAGCAAGATTCACCGTTGTAGCTTCAACCT
1 TTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCAGTTGTAGCTTCAATCT
* * *** *
36558012 GTTCCACTGTAATATGGGGGAAGCAAGATTCGCTG
66 GTTCCACTGCACTACCTGGGAAGTAAGATTCGCTG
36558047 TTGTAGCTTCAATCT
1 TTGTAGCTTCAATCT
36558062 GTTCCACTGT
Statistics
Matches: 276, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
99 2 0.01
100 268 0.97
101 6 0.02
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (100 bp):
TTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCAGTTGTAGCTTCAATCT
GTTCCACTGCACTACCTGGGAAGTAAGATTCGCTG
Found at i:36558092 original size:150 final size:149
Alignment explanation
Indices: 36557647--36558096 Score: 419
Period size: 150 Copynumber: 3.0 Consensus size: 149
36557637 GAGATAAGAC
36557647 TTGTAGCTTCA--ACTTATTTAACTGCAATGTTGGGGAAGCAAGATTCGCAGTTGTAGCTTCAAT
1 TTGTAGCTTCATTA-TT-TTTAACTGCAATGTTGGGGAAGCAAGATTCGCAGTTGTAGCTTCAAT
* * * * * * ** *
36557710 CTGTTCCACTGCACTACCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTTACTGCAAT
64 CTGTTCCACTGCAATATCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGTAAT
* * * *
36557775 GTCGGGGAAGCA-AGATTCACCA
129 GCCAGGG-AG-ATAGATTCGCTA
* ** * * * *
36557797 TTGTAGCTTCAATTA-GTTCCACTGCACTGCCT-AGGAAGTAAGATTCGCTA-TTGTAGCTTCAA
1 TTGTAGCTTC-ATTATTTTTAACTGCAATG-TTGGGGAAGCAAGATTCGC-AGTTGTAGCTTCAA
* ** * * *
36557859 TCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCATTGTAC
63 TCTGTTCCACTGCAATATCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGTAA
* * *
36557924 TTCCTGGGA-AGTAAGATTCGCTG
128 TGCCAGGGAGA-T-AGATTCGCTA
* * * *
36557947 TTGTAGCTTCATTATTTTTAACTACAATGTTGGGGAAGCAAGATTCACCGTTGTAGCTTCAACCT
1 TTGTAGCTTCATTATTTTTAACTGCAATGTTGGGGAAGCAAGATTCGCAGTTGTAGCTTCAATCT
* * *
36558012 GTTCCACTGTAATATGGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGTAATGC
66 GTTCCACTGCAATATCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGTAATGC
**
36558077 CAAAGAGATAGGATTCGCTA
131 CAGGGAGATA-GATTCGCTA
36558097 CCCACAGCTT
Statistics
Matches: 234, Mismatches: 53, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
147 1 0.00
149 7 0.03
150 221 0.94
151 4 0.02
153 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (149 bp):
TTGTAGCTTCATTATTTTTAACTGCAATGTTGGGGAAGCAAGATTCGCAGTTGTAGCTTCAATCT
GTTCCACTGCAATATCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGTAATGC
CAGGGAGATAGATTCGCTA
Found at i:36565959 original size:3 final size:3
Alignment explanation
Indices: 36565951--36565991 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
36565941 ATAAGGAAAC
*
36565951 AAT AAT AAT AAT AA- AAT AAT AAT AAT -AT ATT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
36565992 TTAAACTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:36565971 original size:17 final size:17
Alignment explanation
Indices: 36565951--36565991 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
36565941 ATAAGGAAAC
36565951 AATAATAATA-ATAAAAT
1 AATAATAATATAT-AAAT
*
36565968 AATAATAATATATTAAT
1 AATAATAATATATAAAT
36565985 AATAATA
1 AATAATA
36565992 TTAAACTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 20 0.91
18 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAATAATATATAAAT
Found at i:36565992 original size:14 final size:14
Alignment explanation
Indices: 36565951--36565992 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
36565941 ATAAGGAAAC
*
36565951 AATAATAATAATAA
1 AATAATAATAATAT
36565965 AATAATAATAATAT
1 AATAATAATAATAT
*
36565979 ATTAATAATAATAT
1 AATAATAATAATAT
36565993 TAAACTGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATAATAATAATAT
Found at i:36569779 original size:30 final size:30
Alignment explanation
Indices: 36569745--36569805 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
36569735 ACATTTGAGG
* *
36569745 TAGATTCTTAAGTATTATGTGACACAGGTT
1 TAGATTCTCAAGTATTATGTGACAAAGGTT
36569775 TAGATTCTCAAGTATTATGTGACAAAGGTT
1 TAGATTCTCAAGTATTATGTGACAAAGGTT
36569805 T
1 T
36569806 GGCTCGAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (30 bp):
TAGATTCTCAAGTATTATGTGACAAAGGTT
Found at i:36572845 original size:43 final size:43
Alignment explanation
Indices: 36572784--36572874 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
36572774 CATAGGATCT
* **
36572784 TCGATATGTGTTTTTGTGTAAGACCAC-GTTTGGGACTTTGGCA
1 TCGATATGTGTTTTTGTGTAAGACC-CTGTCTGGGACAGTGGCA
*
36572827 TCGATTTGTGTTTTTGTGTAAGACCCTGTCTGGGACAGTGGCA
1 TCGATATGTGTTTTTGTGTAAGACCCTGTCTGGGACAGTGGCA
36572870 TCGAT
1 TCGAT
36572875 CTATGAATAC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.02
43 42 0.98
ACGTcount: A:0.18, C:0.15, G:0.29, T:0.38
Consensus pattern (43 bp):
TCGATATGTGTTTTTGTGTAAGACCCTGTCTGGGACAGTGGCA
Found at i:36575575 original size:36 final size:36
Alignment explanation
Indices: 36575528--36575605 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
36575518 TGTATTTTCT
*
36575528 ATATTGCTCTAAAATGAATTGAAACTTAATGGTTTG
1 ATATTGCTCTAAAATGAATTGAAACTTAATGGTATG
36575564 ATATTGCTCTAAAATGAATTGAAACTTAATGGTATG
1 ATATTGCTCTAAAATGAATTGAAACTTAATGGTATG
*
36575600 CTATTG
1 ATATTG
36575606 GAACGTTTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (36 bp):
ATATTGCTCTAAAATGAATTGAAACTTAATGGTATG
Found at i:36577036 original size:72 final size:72
Alignment explanation
Indices: 36576960--36577186 Score: 166
Period size: 72 Copynumber: 3.1 Consensus size: 72
36576950 TTATATTATA
36576960 TCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAATAATTGG
1 TCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAATAATTGG
36577025 TTGCACC
66 TTGCACC
* * * * *
36577032 TCTTAAGGCAATTAAAATA-CATTTATTTTTTAAATAA-ATGTATAA---A-A-ATATATAT-AT
1 TCTT-----AATTAAAATAGTA-TTA-TGTTAAAATAATAT-TA-AAGTGAGAGGTACA-ATGAT
* * ** **
36577089 TAA-AATTATGTTATATTATA
56 CAATAA-T-TGGT-T-GCACC
36577109 TCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAATAATTGG
1 TCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAATAATTGG
36577174 TTGCACC
66 TTGCACC
36577181 TCTTAA
1 TCTTAA
36577187 GGGTTGAACC
Statistics
Matches: 110, Mismatches: 22, Indels: 46
0.62 0.12 0.26
Matches are distributed among these distances:
70 2 0.02
71 11 0.10
72 26 0.24
73 5 0.05
74 14 0.13
75 14 0.13
76 5 0.05
77 20 0.18
78 11 0.10
79 2 0.02
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.38
Consensus pattern (72 bp):
TCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAATAATTGG
TTGCACC
Found at i:36577051 original size:149 final size:150
Alignment explanation
Indices: 36576889--36577188 Score: 593
Period size: 149 Copynumber: 2.0 Consensus size: 150
36576879 TATGTCAAAT
36576889 GCAATTAAAAATACATTTATTTTTTAAATAAATGTATAAAAATATATATATTAAAATTATGTTAT
1 GCAATTAAAAATACATTTATTTTTTAAATAAATGTATAAAAATATATATATTAAAATTATGTTAT
36576954 ATTATATCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAAT
66 ATTATATCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAAT
36577019 AATTGGTTGCACCTCTTAAG
131 AATTGGTTGCACCTCTTAAG
36577039 GCAATT-AAAATACATTTATTTTTTAAATAAATGTATAAAAATATATATATTAAAATTATGTTAT
1 GCAATTAAAAATACATTTATTTTTTAAATAAATGTATAAAAATATATATATTAAAATTATGTTAT
36577103 ATTATATCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAAT
66 ATTATATCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAAT
36577168 AATTGGTTGCACCTCTTAAG
131 AATTGGTTGCACCTCTTAAG
36577188 G
1 G
36577189 GTTGAACCAA
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
149 144 0.96
150 6 0.04
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.39
Consensus pattern (150 bp):
GCAATTAAAAATACATTTATTTTTTAAATAAATGTATAAAAATATATATATTAAAATTATGTTAT
ATTATATCTTAATTAAAATAGTATTATGTTAAAATAATATTAAAGTGAGAGGTACAATGATCAAT
AATTGGTTGCACCTCTTAAG
Found at i:36585865 original size:24 final size:24
Alignment explanation
Indices: 36585838--36585889 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
36585828 TTAGTAAGTC
*
36585838 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
36585862 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
36585886 AAAT
1 AAAT
36585890 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:36587762 original size:14 final size:14
Alignment explanation
Indices: 36587745--36587772 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36587735 CTCACATTTC
36587745 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
36587759 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
36587773 GATTTCTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:36587859 original size:18 final size:17
Alignment explanation
Indices: 36587836--36587871 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
36587826 CTGTAAAATC
36587836 GATTTTGATTTTGATTTT
1 GATTTTG-TTTTGATTTT
*
36587854 GATTTTGTTTTGCTTTT
1 GATTTTGTTTTGATTTT
36587871 G
1 G
36587872 CTCTGCTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.11, C:0.03, G:0.19, T:0.67
Consensus pattern (17 bp):
GATTTTGTTTTGATTTT
Found at i:36587873 original size:6 final size:6
Alignment explanation
Indices: 36587836--36587871 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
36587826 CTGTAAAATC
*
36587836 GATTTT GATTTT GATTTT GATTTT G-TTTT GCTTTT G
1 GATTTT GATTTT GATTTT GATTTT GATTTT GATTTT G
36587872 CTCTGCTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.11, C:0.03, G:0.19, T:0.67
Consensus pattern (6 bp):
GATTTT
Found at i:36589635 original size:34 final size:34
Alignment explanation
Indices: 36589572--36589638 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
36589562 CAAGAATACT
* *
36589572 ATTACGCCTCTGTTCCATTACATTCAACCAAACA
1 ATTACGCCTCTATTCCATTACATGCAACCAAACA
36589606 ATTACGCCTCTATTCCATTACA-GCGAACCAAAC
1 ATTACGCCTCTATTCCATTACATGC-AACCAAAC
36589639 GTGCCCTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 1 0.03
34 29 0.97
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.27
Consensus pattern (34 bp):
ATTACGCCTCTATTCCATTACATGCAACCAAACA
Found at i:36590166 original size:39 final size:40
Alignment explanation
Indices: 36590111--36590186 Score: 136
Period size: 39 Copynumber: 1.9 Consensus size: 40
36590101 TAAAATTATC
36590111 TTTTTTTTTTCTCTCTCATTTTATTTCCAAAGAGTTTTAG
1 TTTTTTTTTTCTCTCTCATTTTATTTCCAAAGAGTTTTAG
*
36590151 TTTTTTTTTT-TCTCTCATTTTATTTTCAAAGAGTTT
1 TTTTTTTTTTCTCTCTCATTTTATTTCCAAAGAGTTT
36590187 CCAAATATGC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 25 0.71
40 10 0.29
ACGTcount: A:0.17, C:0.13, G:0.07, T:0.63
Consensus pattern (40 bp):
TTTTTTTTTTCTCTCTCATTTTATTTCCAAAGAGTTTTAG
Found at i:36590338 original size:26 final size:25
Alignment explanation
Indices: 36590291--36590348 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
36590281 CGAACAAATT
* *
36590291 TATTTGACTCAACTCAATTCGAATA
1 TATTTCACTCAACTCAATTCGAAAA
*
36590316 TCATTTCACTCAACTTGAA-TCGAAAA
1 T-ATTTCACTCAAC-TCAATTCGAAAA
36590342 TATTTCA
1 TATTTCA
36590349 AATCAAGTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 7 0.25
26 18 0.64
27 3 0.11
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (25 bp):
TATTTCACTCAACTCAATTCGAAAA
Found at i:36595878 original size:50 final size:50
Alignment explanation
Indices: 36595782--36596016 Score: 179
Period size: 50 Copynumber: 4.6 Consensus size: 50
36595772 AGATCACATC
* * *
36595782 TAAGACCATGTCTGGGACATTGCATTGGCATCATTGAGGTTATGAGATGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATGAGAAGTCCCATG
* * **
36595838 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAGTCCCATG
* * * *
36595888 TAAAACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAGTCCCATG
* * * * * * * *
36595938 TAAGACCATATCTAGGATATGACATTGGTA--GTACAAGA-AACATCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAA-GTCCCATG
* * *
36595987 TAAGACTATGTCTGGGACATAGCTTTGGCA
1 TAAGACCATGTCTGGGACATGGCATTGGCA
36596017 TGTATTATCA
Statistics
Matches: 145, Mismatches: 32, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
48 3 0.02
49 33 0.23
50 77 0.53
52 1 0.01
53 2 0.01
55 1 0.01
56 28 0.19
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAGTCCCATG
Found at i:36611170 original size:12 final size:12
Alignment explanation
Indices: 36611153--36611181 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
36611143 AAAAGGGGAC
36611153 AACAAACAAAAA
1 AACAAACAAAAA
36611165 AACAAACAAAAA
1 AACAAACAAAAA
36611177 AACAA
1 AACAA
36611182 GAGGACAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (12 bp):
AACAAACAAAAA
Found at i:36612161 original size:4 final size:4
Alignment explanation
Indices: 36612152--36612245 Score: 59
Period size: 4 Copynumber: 23.8 Consensus size: 4
36612142 TTTTCACTTG
* ** * * *
36612152 TTTA TTTA TTCA -TTA TTCC TTTTA TTTTA TTCA TTTA TTCA TTCA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TT-TA TTTA TTTA TTTA TTTA TTTA
* * * *
36612201 CTTG TTTA TATA -TTA TTTA TTTA TTCA TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
36612246 TAATCCTTCT
Statistics
Matches: 68, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
3 7 0.10
4 54 0.79
5 7 0.10
ACGTcount: A:0.23, C:0.09, G:0.01, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:36612182 original size:21 final size:21
Alignment explanation
Indices: 36612152--36612191 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
36612142 TTTTCACTTG
36612152 TTTATTTATTCA-TTATTCCT
1 TTTATTTATTCATTTATTCCT
36612172 TTTATTTTATTCATTTATTC
1 TTTA-TTTATTCATTTATTC
36612192 ATTCATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 8 0.44
22 6 0.33
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTATTTATTCATTTATTCCT
Found at i:36612199 original size:21 final size:21
Alignment explanation
Indices: 36612156--36612199 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
36612146 CACTTGTTTA
* *
36612156 TTTATTCATTATTCCTTTTAT
1 TTTATTCATTATTCCATTCAT
36612177 TTTATTCATTTATT-CATTCAT
1 TTTATTCA-TTATTCCATTCAT
36612198 TT
1 TT
36612200 ACTTGTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.20, C:0.14, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTATTCATTATTCCATTCAT
Found at i:36612224 original size:35 final size:31
Alignment explanation
Indices: 36612152--36612235 Score: 91
Period size: 35 Copynumber: 2.6 Consensus size: 31
36612142 TTTTCACTTG
36612152 TTTATTTATTCATTA-TT-CCTTTTATTTTA
1 TTTATTTATTCATTATTTACCTTTTATTTTA
* *
36612181 TTCATTTATTCATTCATTTACTTGTTTATATATTA
1 TTTATTTATTCATT-ATTTACCT-TTTAT-T-TTA
36612216 TTTATTTATTCATTTATTTA
1 TTTATTTATTCA-TTATTTA
36612236 TTTATTATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
29 13 0.29
30 1 0.02
31 2 0.04
32 2 0.04
33 5 0.11
34 1 0.02
35 19 0.42
36 2 0.04
ACGTcount: A:0.24, C:0.10, G:0.01, T:0.65
Consensus pattern (31 bp):
TTTATTTATTCATTATTTACCTTTTATTTTA
Found at i:36615551 original size:5 final size:5
Alignment explanation
Indices: 36615543--36615605 Score: 58
Period size: 5 Copynumber: 12.8 Consensus size: 5
36615533 TTTTCTATTA
* * * *
36615543 AAAAT AAAAG AAACG AAAAG AAAA- TAAAG AAAAG AAAAT AAAAG AAAA-
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
*
36615591 AGAAG AAAAAG AAAA
1 AAAAG -AAAAG AAAA
36615606 AGGACAGGCC
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
4 6 0.13
5 36 0.78
6 4 0.09
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (5 bp):
AAAAG
Found at i:36615575 original size:24 final size:25
Alignment explanation
Indices: 36615548--36615605 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
36615538 TATTAAAAAT
*
36615548 AAAAGAAACGAAAAGAAAATA-AAG-
1 AAAAGAAAAGAAAAGAAAA-AGAAGA
*
36615572 AAAAGAAAATAAAAGAAAAAGAAGA
1 AAAAGAAAAGAAAAGAAAAAGAAGA
36615597 AAAAGAAAA
1 AAAAGAAAA
36615606 AGGACAGGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 1 0.03
24 20 0.67
25 9 0.30
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.03
Consensus pattern (25 bp):
AAAAGAAAAGAAAAGAAAAAGAAGA
Found at i:36615596 original size:19 final size:18
Alignment explanation
Indices: 36615543--36615599 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
36615533 TTTTCTATTA
36615543 AAAATAAAAGAAACGAAAAG
1 AAAATAAAAGAAA--AAAAG
36615563 AAAAT-AAAG---AAAAG
1 AAAATAAAAGAAAAAAAG
36615577 AAAATAAAAGAAAAAGAAG
1 AAAATAAAAGAAAAA-AAG
36615596 AAAA
1 AAAA
36615600 AGAAAAAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
14 10 0.31
15 4 0.12
18 2 0.06
19 11 0.34
20 5 0.16
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (18 bp):
AAAATAAAAGAAAAAAAG
Found at i:36616883 original size:92 final size:92
Alignment explanation
Indices: 36616758--36617059 Score: 341
Period size: 92 Copynumber: 3.3 Consensus size: 92
36616748 CAGACTGAAG
* * * *
36616758 ATAGCGAATCTTATTTCCCTAAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGCAGATCTTAT
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGCAGATCTTAT
* * *
36616823 CTCTCTGAAGATGCAGTAGAGTAGATC
66 CTCTCTGAAGTTGCAATAGAGCAGATC
* * * *
36616850 ATAGCAAACCTTAGCTCCCTGAAGTTACAGTGGAGCAGG-TTGAAG-T-T--A-CG-AG-TCTTA
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAAC-GGATTGAAGCTATAAATTGCAGATCTTA
* * *
36616907 TCTCCCTGAAGTTGCAATGGAGCAGACTGAAG
65 TCTCTCTGAAGTTGCAATAGAGCAGA-T---C
* * * *
36616939 ATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTACCGATCTTAT
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGCAGATCTTAT
36617004 CTCTCTGAAGTTGCAATAGAGCAGATC
66 CTCTCTGAAGTTGCAATAGAGCAGATC
36617031 ATAGCAAACCTTATCTCCCTGAAGTTGCA
1 ATAGCAAACCTTATCTCCCTGAAGTTGCA
36617060 ACGGAACAGG
Statistics
Matches: 170, Mismatches: 27, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
85 26 0.15
86 3 0.02
87 1 0.01
88 3 0.02
89 37 0.22
90 2 0.01
91 2 0.01
92 62 0.36
93 3 0.02
95 2 0.01
96 29 0.17
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (92 bp):
ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGCAGATCTTAT
CTCTCTGAAGTTGCAATAGAGCAGATC
Found at i:36616894 original size:137 final size:137
Alignment explanation
Indices: 36616432--36616919 Score: 484
Period size: 137 Copynumber: 3.6 Consensus size: 137
36616422 GATGGATTGA
* * * *
36616432 AGATCATAGCAATCCTTATCTCCATGAAGTTGCAGTGGAGCAGACTAAAGATAGTGAATCTTATT
1 AGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATC
* * * *
36616497 TCCCTGAAGTTACAGTGGAACAGATTAAAGCTATAAATTACAGATCTTATCTTTCTGAAGTTGCA
66 TCCCTAAAGTTACAGTGGAACGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGCA
*
36616562 GTAGAGC
131 GTAGAGT
* * * ** * * * * *
36616569 AAATCATATCAAAACTTATCTCTTTGAAGTTGCAGTGGAACA-AGTTAAAAATAAACCAATCTTA
1 AGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAAGAT-AGCGAATCTTA
* * * *** *
36616633 TCTCCCTAAAGTTATAGTGGAGCAGG-TTGAAG--ACAGGCTACAAATCTTATCTC-CTTGAAGT
64 TCTCCCTAAAGTTACAGTGGAAC-GGATTGAAGCTATAAATTACAGATCTTATCTCTC-TGAAGT
*
36616694 TGCAGTGGAGT
127 TGCAGTAGAGT
* * * *
36616705 AGATTAAAGCCACAAACCTTATCCCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTT
1 AGATCATAG---CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTT
* * * *
36616770 ATTTCCCTAAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGAT
63 ATCTCCCTAAAGTTACAGTGGAACGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGTT
36616835 GCAGTAGAGT
128 GCAGTAGAGT
* * ** * * *
36616845 AGATCATAGCAAACCTTAGCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGTTA-CGAGTCTTATC
1 AGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATC
*
36616909 TCCCTGAAGTT
66 TCCCTAAAGTT
36616920 GCAATGGAGC
Statistics
Matches: 276, Mismatches: 63, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
135 1 0.00
136 55 0.20
137 81 0.29
138 66 0.24
139 34 0.12
140 38 0.14
141 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (137 bp):
AGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATC
TCCCTAAAGTTACAGTGGAACGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGCA
GTAGAGT
Found at i:36616913 original size:44 final size:45
Alignment explanation
Indices: 36616437--36617286 Score: 300
Period size: 44 Copynumber: 18.8 Consensus size: 45
36616427 ATTGAAGATC
* *
36616437 ATAGC-AATCCTTATCTCCATGAAGTTGCAGTGGAGCAGACTAAAG
1 ATAGCAAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
** * * * * *
36616482 ATAGTGAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAG
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * ** * **
36616527 CTATAAATTACAGATCTTATCTTTCTGAAGTTGCAGTAGAGCA-A---ATC
1 --AT--A--GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * ** * * * *
36616574 ATATCAAAACTTATCTCTTTGAAGTTGCAGTGGAACA-AGTTAAAA
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTGAAG
* * * ** **
36616619 ATAAACCAATCTTATCTCCCTAAAGTTATAGTGGAGCAGGTTGAAG
1 AT-AGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * * *
36616665 ACAGGCTACAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAG
1 ATA-G---CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
** * *
36616714 CCA-CAAACCTTATCCCCCTGAAGTTGCAGTGGAGCAGACTGAAG
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * * * *
36616758 ATAGCGAATCTTATTTCCCTAAAGTTGCAGTGGAACGGATTGAAG
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * * * *
36616803 CTATAAATTGCAGATCTTATCTCTCTGAAGATGCAGTAGAGTAGA-T---C
1 --AT--A--GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * **
36616850 ATAGCAAACCTTAGCTCCCTGAAGTTACAGTGGAGCAGGTTGAAG
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * *
36616895 TTA-CGAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAG
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * *
36616939 ATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACGGATTGAAG
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * * *
36616984 CTATA-AATTACCGATCTTATCTCTCTGAAGTTGCAATAGAGCAGA-T---C
1 --ATAGCA--A---ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* ** * * * *
36617031 ATAGCAAACCTTATCTCCCTGAAGTTGCAACGGAACAG-GTTACAA
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-AG
* * * * * *
36617076 ATA-AATCAATCTTATCTCCTTAAAGTTGCAGTAGAGAAGATTGAAG
1 ATAGCA--AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * *
36617122 ATAGGCTACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAG
1 ATA-G---CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
** * * * * **
36617171 CGA-CCAACCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTGAAG
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* *
36617215 ATA-CCAATCTTATCTCCC------TG-AGTGGAGCAGATTGAAG
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* ** *
36617252 CTA-CAAATCCAATCTCCCTGAAGTTGTAGTGGAGC
1 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGC
36617287 GGATTAAAAC
Statistics
Matches: 592, Mismatches: 156, Indels: 115
0.69 0.18 0.13
Matches are distributed among these distances:
37 30 0.05
38 2 0.00
41 82 0.14
42 1 0.00
43 4 0.01
44 129 0.22
45 118 0.20
46 64 0.11
47 10 0.02
48 1 0.00
49 71 0.12
50 3 0.01
51 77 0.13
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (45 bp):
ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
Found at i:36616916 original size:181 final size:181
Alignment explanation
Indices: 36616722--36617056 Score: 580
Period size: 181 Copynumber: 1.9 Consensus size: 181
36616712 AGCCACAAAC
* *
36616722 CTTATCCCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTAAAGTTGCA
1 CTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCA
* * *
36616787 GTGGAACGGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGATGCAGTAGAGTAGATCAT
66 GTGGAACGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGATGCAATAGAGCAGATCAT
36616852 AGCAAACCTTAGCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGTTACGAGT
131 AGCAAACCTTAGCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGTTACGAGT
* *
36616903 CTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
1 CTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCA
* *
36616968 GTGGAACGGATTGAAGCTATAAATTACCGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCAT
66 GTGGAACGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGATGCAATAGAGCAGATCAT
*
36617033 AGCAAACCTTATCTCCCTGAAGTT
131 AGCAAACCTTAGCTCCCTGAAGTT
36617057 GCAACGGAAC
Statistics
Matches: 144, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
181 144 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (181 bp):
CTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCA
GTGGAACGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGATGCAATAGAGCAGATCAT
AGCAAACCTTAGCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGTTACGAGT
Found at i:36617250 original size:37 final size:37
Alignment explanation
Indices: 36617198--36617272 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
36617188 TTGAAGTTGT
* * **
36617198 AGTGGAGCAGGTTGAAGATACCAATCTTATCTCCCTG
1 AGTGGAGCAGATTGAAGATACAAATCCAATCTCCCTG
*
36617235 AGTGGAGCAGATTGAAGCTACAAATCCAATCTCCCTG
1 AGTGGAGCAGATTGAAGATACAAATCCAATCTCCCTG
36617272 A
1 A
36617273 AGTTGTAGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (37 bp):
AGTGGAGCAGATTGAAGATACAAATCCAATCTCCCTG
Found at i:36622247 original size:27 final size:28
Alignment explanation
Indices: 36622198--36622250 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
36622188 GAAACTTGTC
*
36622198 TTTTTTTTGTTATATTTATTATTTTAAT
1 TTTTTTTTGTTATATTTACTATTTTAAT
36622226 TTTTTTGTTG-TATATTT-CTATTTTA
1 TTTTTT-TTGTTATATTTACTATTTTA
36622251 CATACGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 7 0.30
28 13 0.57
29 3 0.13
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.74
Consensus pattern (28 bp):
TTTTTTTTGTTATATTTACTATTTTAAT
Found at i:36636278 original size:26 final size:25
Alignment explanation
Indices: 36636232--36636281 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
36636222 GAAACTTGTC
*
36636232 TTTTTTGTTATATTTATTATTTTAA
1 TTTTTTGTTATATTTACTATTTTAA
36636257 TTTTTTGTTGTATATTT-CTATTTTA
1 TTTTTTG-T-TATATTTACTATTTTA
36636282 CATACGAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 8 0.36
27 7 0.32
ACGTcount: A:0.20, C:0.02, G:0.06, T:0.72
Consensus pattern (25 bp):
TTTTTTGTTATATTTACTATTTTAA
Found at i:36637120 original size:19 final size:19
Alignment explanation
Indices: 36637098--36637134 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
36637088 TATATATATA
36637098 TTTTTTACGAATATTTTCC
1 TTTTTTACGAATATTTTCC
*
36637117 TTTTTTATGAATATTTTC
1 TTTTTTACGAATATTTTC
36637135 ATATTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.11, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTTTTACGAATATTTTCC
Found at i:36641419 original size:23 final size:23
Alignment explanation
Indices: 36641392--36641443 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
36641382 CATAAGTGCC
* *
36641392 ACACTGATATGTAGCCGAAGCTA
1 ACACTGATACGTAGCCGAAGATA
*
36641415 CCACTGATACGTAGCCGAAGATA
1 ACACTGATACGTAGCCGAAGATA
36641438 ACACTG
1 ACACTG
36641444 TCAATTTCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (23 bp):
ACACTGATACGTAGCCGAAGATA
Found at i:36641529 original size:114 final size:114
Alignment explanation
Indices: 36641329--36641563 Score: 443
Period size: 114 Copynumber: 2.1 Consensus size: 114
36641319 ATTACACTTA
36641329 GTCAATTTCCCGTTGAACACTCGGAATATACATAGATACGTAGAGAATTAGCACATAAGTGCCAC
1 GTCAATTTCCCGTTGAACACTCGGAATATACATAGATACGTAGAGAATTAGCACATAAGTGCCAC
36641394 ACTGATATGTAGCCGAAGCTACCACTGATACGTAGCCGAAGATAACACT
66 ACTGATATGTAGCCGAAGCTACCACTGATACGTAGCCGAAGATAACACT
36641443 GTCAATTTCCCGTTGAACACTCGGAATATACATAGATACGTAGAGAATTAGCACATAAGTGCCAC
1 GTCAATTTCCCGTTGAACACTCGGAATATACATAGATACGTAGAGAATTAGCACATAAGTGCCAC
* *
36641508 ACTGATATGTAGCCGAAGCTACCACTGATACGTAGCCGAAGCTACCACT
66 ACTGATATGTAGCCGAAGCTACCACTGATACGTAGCCGAAGATAACACT
36641557 GATCAAT
1 G-TCAAT
36641564 AACACTGGAA
Statistics
Matches: 118, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
114 113 0.96
115 5 0.04
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (114 bp):
GTCAATTTCCCGTTGAACACTCGGAATATACATAGATACGTAGAGAATTAGCACATAAGTGCCAC
ACTGATATGTAGCCGAAGCTACCACTGATACGTAGCCGAAGATAACACT
Found at i:36641533 original size:23 final size:23
Alignment explanation
Indices: 36641507--36641559 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
36641497 ATAAGTGCCA
*
36641507 CACTGATATGTAGCCGAAGCTAC
1 CACTGATACGTAGCCGAAGCTAC
36641530 CACTGATACGTAGCCGAAGCTAC
1 CACTGATACGTAGCCGAAGCTAC
36641553 CACTGAT
1 CACTGAT
36641560 CAATAACACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATACGTAGCCGAAGCTAC
Found at i:36641811 original size:18 final size:17
Alignment explanation
Indices: 36641785--36641823 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
36641775 ATTTTCCTTC
36641785 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
36641802 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
36641820 CACA
1 CACA
36641824 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:36655577 original size:20 final size:20
Alignment explanation
Indices: 36655552--36655591 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36655542 CGTAAAATGA
*
36655552 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
36655572 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
36655592 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:36655581 original size:34 final size:35
Alignment explanation
Indices: 36655537--36655603 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
36655527 CAGTAAAATA
*
36655537 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
36655571 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
36655604 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:36655607 original size:14 final size:15
Alignment explanation
Indices: 36655531--36655607 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
36655521 GATTGCCAGT
* *
36655531 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
36655545 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
36655559 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
36655579 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
36655594 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
36655608 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:36656240 original size:23 final size:23
Alignment explanation
Indices: 36656209--36656258 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
36656199 TAAATAATAA
* *
36656209 TTGTTAATTTTATT-TATATATTT
1 TTGTAAATTTTATTAT-TACATTT
36656232 TTGTAAATTTTATTATTACATTT
1 TTGTAAATTTTATTATTACATTT
36656255 TTGT
1 TTGT
36656259 TATTTGTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (23 bp):
TTGTAAATTTTATTATTACATTT
Found at i:36666526 original size:72 final size:72
Alignment explanation
Indices: 36666431--36666622 Score: 330
Period size: 72 Copynumber: 2.7 Consensus size: 72
36666421 CAATGCTAAA
* *
36666431 CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTTGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
36666496 GTGCAAT
66 GTGCAAT
*
36666503 CTAGTTTTATCAATGGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
*
36666568 GTGTAAT
66 GTGCAAT
* *
36666575 CTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTT
36666623 GTAACACCCC
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 113 1.00
ACGTcount: A:0.22, C:0.06, G:0.17, T:0.56
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTGCAAT
Found at i:36671046 original size:21 final size:20
Alignment explanation
Indices: 36671018--36671056 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
36671008 GCAGATTTTA
36671018 TGGAATATGA-AGATATTAAC
1 TGGAATATGAGA-ATATTAAC
36671038 TGGACATATGAGAATATTA
1 TGGA-ATATGAGAATATTA
36671057 TTGATTAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 12 0.71
22 1 0.06
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
TGGAATATGAGAATATTAAC
Found at i:36671677 original size:13 final size:13
Alignment explanation
Indices: 36671661--36671698 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
36671651 CTTTTTCACG
36671661 GCACTTTCCAAAA
1 GCACTTTCCAAAA
36671674 GCACTTTCCAAAA
1 GCACTTTCCAAAA
*
36671687 GCA-TTGCCAAAA
1 GCACTTTCCAAAA
36671699 TAGCCCTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 8 0.33
13 16 0.67
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (13 bp):
GCACTTTCCAAAA
Found at i:36672171 original size:21 final size:22
Alignment explanation
Indices: 36672131--36672171 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
36672121 GTCTTAACTT
*
36672131 ATTGCAATTTATTTTATCAATC
1 ATTGCAATATATTTTATCAATC
*
36672153 ATTGCAATAT-TTTTGTCAA
1 ATTGCAATATATTTTATCAA
36672172 ACTATATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (22 bp):
ATTGCAATATATTTTATCAATC
Found at i:36677541 original size:14 final size:14
Alignment explanation
Indices: 36677522--36677551 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36677512 CTATTTGATA
*
36677522 GTAATTGACTTTTC
1 GTAATTGACTTGTC
36677536 GTAATTGACTTGTC
1 GTAATTGACTTGTC
36677550 GT
1 GT
36677552 GAAGAAAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.47
Consensus pattern (14 bp):
GTAATTGACTTGTC
Found at i:36683019 original size:20 final size:20
Alignment explanation
Indices: 36682994--36683044 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
36682984 TCAACCTTTA
36682994 AATCAAGTTAAAATGGT-TTC
1 AATCAAGTTAAAAT-GTCTTC
* *
36683014 AATCAAGTTAGAATTTCTTC
1 AATCAAGTTAAAATGTCTTC
36683034 AATC-AGTTAAA
1 AATCAAGTTAAA
36683045 CTATTTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 7 0.26
20 20 0.74
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (20 bp):
AATCAAGTTAAAATGTCTTC
Found at i:36688696 original size:35 final size:35
Alignment explanation
Indices: 36688645--36688715 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
36688635 TAATGTAAGG
* *
36688645 TGAGTTTGAAATGAGCATGGTGGGAGAGCTCTCAT
1 TGAGCTTGAAATGAGCATGATGGGAGAGCTCTCAT
36688680 TGAGCTTGAAATGAGCATGATGGGAGAGCTCTCAT
1 TGAGCTTGAAATGAGCATGATGGGAGAGCTCTCAT
36688715 T
1 T
36688716 CTTTTTGGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (35 bp):
TGAGCTTGAAATGAGCATGATGGGAGAGCTCTCAT
Found at i:36693992 original size:55 final size:55
Alignment explanation
Indices: 36693925--36694032 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
36693915 CTTAACTTGC
* *
36693925 AAACATTTTGATCTTGTAA-GAGTTATTTCATTGTTTGCTTATTTGTATCTCTTTG
1 AAACATTCTGATCTTGTAAGGA-TTATTACATTGTTTGCTTATTTGTATCTCTTTG
*
36693980 AAACATTCTGATCTTGTAAGGATTATTACTTTGTTTGCTTATTTGTATCTCTT
1 AAACATTCTGATCTTGTAAGGATTATTACATTGTTTGCTTATTTGTATCTCTT
36694033 ATAGAGGGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
55 47 0.96
56 2 0.04
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.52
Consensus pattern (55 bp):
AAACATTCTGATCTTGTAAGGATTATTACATTGTTTGCTTATTTGTATCTCTTTG
Found at i:36696750 original size:9 final size:9
Alignment explanation
Indices: 36696733--36696769 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
36696723 TATAGTTTGA
*
36696733 TATTTGAAT
1 TATTCGAAT
36696742 TATTCGAAT
1 TATTCGAAT
*
36696751 TATTCGAGT
1 TATTCGAAT
36696760 TATTCGAAT
1 TATTCGAAT
36696769 T
1 T
36696770 TGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:36696839 original size:9 final size:9
Alignment explanation
Indices: 36696822--36696852 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36696812 TCGAGTTGAT
36696822 TCGAATAAC
1 TCGAATAAC
*
36696831 TCGATTAAC
1 TCGAATAAC
36696840 TCGAATAAC
1 TCGAATAAC
36696849 TCGA
1 TCGA
36696853 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:36711061 original size:19 final size:19
Alignment explanation
Indices: 36711037--36711074 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
36711027 TAGATAAGAT
36711037 TGAGGTGTTATAAGGTCGG
1 TGAGGTGTTATAAGGTCGG
36711056 TGAGGTGTTATAAGGTCGG
1 TGAGGTGTTATAAGGTCGG
36711075 GGTCTGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.42, T:0.32
Consensus pattern (19 bp):
TGAGGTGTTATAAGGTCGG
Found at i:36715777 original size:13 final size:13
Alignment explanation
Indices: 36715759--36715792 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
36715749 ACCTCCTTGG
36715759 ATTAAATTATTAA
1 ATTAAATTATTAA
36715772 ATTAAAATTATTAA
1 ATT-AAATTATTAA
36715786 A-TAAATT
1 ATTAAATT
36715793 GAAATTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:36719600 original size:12 final size:13
Alignment explanation
Indices: 36719577--36719641 Score: 51
Period size: 13 Copynumber: 4.7 Consensus size: 13
36719567 TTATGACTAC
*
36719577 ATTATAATATTTT
1 ATTATTATATTTT
36719590 ATT-TTATATTTT
1 ATTATTATATTTT
*
36719602 ATTATTATTGTTATTAAT
1 ATTATTA----TATT-TT
36719620 ATTATTATATTTT
1 ATTATTATATTTT
*
36719633 CTTATTATA
1 ATTATTATA
36719642 GTGATATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
12 11 0.26
13 15 0.36
14 4 0.10
17 4 0.10
18 8 0.19
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (13 bp):
ATTATTATATTTT
Found at i:36723556 original size:53 final size:53
Alignment explanation
Indices: 36723492--36723598 Score: 178
Period size: 53 Copynumber: 2.0 Consensus size: 53
36723482 ATAAGGTATG
* * *
36723492 AAAGTTGATCATTCTCTTACTCTCCAAATTTGATTAACAACATTAAGGATAGA
1 AAAGTTCATCATTCTCTTACTCTCCAAATTCGATCAACAACATTAAGGATAGA
*
36723545 AAAGTTCATCATTCTCTTACTCTCTAAATTCGATCAACAACATTAAGGATAGA
1 AAAGTTCATCATTCTCTTACTCTCCAAATTCGATCAACAACATTAAGGATAGA
36723598 A
1 A
36723599 TATAATATGG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (53 bp):
AAAGTTCATCATTCTCTTACTCTCCAAATTCGATCAACAACATTAAGGATAGA
Found at i:36724614 original size:28 final size:28
Alignment explanation
Indices: 36724581--36724635 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
36724571 TAGTTTCAAT
36724581 ATAAAT-ATATGTT-TTATTATAATTTAAC
1 ATAAATGATAT-TTATTATT-TAATTTAAC
*
36724609 ATAAATGGTATTTATTATTTAATTTAA
1 ATAAATGATATTTATTATTTAATTTAA
36724636 ATATGTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (28 bp):
ATAAATGATATTTATTATTTAATTTAAC
Found at i:36730826 original size:81 final size:81
Alignment explanation
Indices: 36730689--36730858 Score: 331
Period size: 81 Copynumber: 2.1 Consensus size: 81
36730679 TGCATAATCC
*
36730689 TCTGAACTCGTCTAAGTGTTGTGATGCCTGAGTCTTCCAATCCCTTATCTGTCAAGGCCTTACCC
1 TCTGAACTCGTCTAAGTGTTGTGATGCCTGAGTCTTCCAATCCCTTATCTGCCAAGGCCTTACCC
36730754 ACATCTGAACTATCTA
66 ACATCTGAACTATCTA
36730770 TCTGAACTCGTCTAAGTGTTGTGATGCCTGAGTCTTCCAATCCCTTATCTGCCAAGGCCTTACCC
1 TCTGAACTCGTCTAAGTGTTGTGATGCCTGAGTCTTCCAATCCCTTATCTGCCAAGGCCTTACCC
36730835 ACATCTGAACTATCTA
66 ACATCTGAACTATCTA
36730851 TCTGAACT
1 TCTGAACT
36730859 GTGGCCCGTT
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (81 bp):
TCTGAACTCGTCTAAGTGTTGTGATGCCTGAGTCTTCCAATCCCTTATCTGCCAAGGCCTTACCC
ACATCTGAACTATCTA
Found at i:36742181 original size:6 final size:6
Alignment explanation
Indices: 36742172--36742197 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
36742162 TAAGTCTAAG
36742172 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
36742198 TAAACTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:36743916 original size:18 final size:18
Alignment explanation
Indices: 36743893--36743936 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
36743883 ATATATATAG
36743893 AACTAATAATAAACAATA-
1 AACTAATAA-AAACAATAT
*
36743911 AACTAAT-AAAATAATAT
1 AACTAATAAAAACAATAT
36743928 AACTAATAA
1 AACTAATAA
36743937 GAATAATGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 8 0.35
18 8 0.35
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (18 bp):
AACTAATAAAAACAATAT
Found at i:36743920 original size:8 final size:8
Alignment explanation
Indices: 36743899--36743936 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
36743889 ATAGAACTAA
36743899 TAATAAAC
1 TAATAAAC
36743907 -AATAAAC
1 TAATAAAC
*
36743914 TAATAAAA
1 TAATAAAC
36743922 TAATATAAC
1 TAATA-AAC
36743931 TAATAA
1 TAATAA
36743937 GAATAATGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
7 7 0.27
8 12 0.46
9 7 0.27
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (8 bp):
TAATAAAC
Found at i:36743941 original size:18 final size:16
Alignment explanation
Indices: 36743893--36743943 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 16
36743883 ATATATATAG
*
36743893 AACTAATAATAAACAATA
1 AACTAAT-A-AAATAATA
36743911 AACTAATAAAATAATA
1 AACTAATAAAATAATA
36743927 TAACTAATAAGAATAAT
1 -AACTAATAA-AATAAT
36743944 GGATAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 7 0.23
17 10 0.33
18 13 0.43
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.25
Consensus pattern (16 bp):
AACTAATAAAATAATA
Found at i:36745064 original size:115 final size:115
Alignment explanation
Indices: 36744855--36745066 Score: 266
Period size: 115 Copynumber: 1.8 Consensus size: 115
36744845 AAATTTTGGA
* * * * * *
36744855 AAAATTAAGTCTCAGGATCCATACGGCCAATGACATGCCTGTGTGTGCAAGCTGAGTGGGTCACA
1 AAAATTAAGTCTCAGGATCCACACGGCCAAGGACACGCCTGTGTGTCCAAACTCAGTGGGTCACA
* * *
36744920 TGGCCATGTCGCCAAGCCGTCTAACTCACTGTTGAATATGTTAAAATTTT
66 CGACCATGTCGCCAAGCCATCTAACTCACTGTTGAATATGTTAAAATTTT
*
36744970 AAAATTAAGTCTTAGGATCCACACGGCCAAGGACACGTCC-GTGTGTCCAAAC-CATGTGGGTCA
1 AAAATTAAGTCTCAGGATCCACACGGCCAAGGACACG-CCTGTGTGTCCAAACTCA-GTGGGTCA
* * * *
36745033 CACGACCATGTCGCTAGGCCATGTAAGTCACTGT
64 CACGACCATGTCGCCAAGCCATCTAACTCACTGT
36745067 CAAAACCCTT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
114 1 0.01
115 78 0.96
116 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (115 bp):
AAAATTAAGTCTCAGGATCCACACGGCCAAGGACACGCCTGTGTGTCCAAACTCAGTGGGTCACA
CGACCATGTCGCCAAGCCATCTAACTCACTGTTGAATATGTTAAAATTTT
Found at i:36749297 original size:26 final size:26
Alignment explanation
Indices: 36749268--36749329 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
36749258 GACTTGTGAC
36749268 AAGTGGTGAG-ACCGAAAGGGTATCTT
1 AAGTGGT-AGTACCGAAAGGGTATCTT
*
36749294 AAGTGGTAGTCCCGAAAGGGTATCTT
1 AAGTGGTAGTACCGAAAGGGTATCTT
36749320 AAGTGGTAGT
1 AAGTGGTAGT
36749330 CCTTAGTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 2 0.06
26 32 0.94
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (26 bp):
AAGTGGTAGTACCGAAAGGGTATCTT
Found at i:36749330 original size:26 final size:26
Alignment explanation
Indices: 36749279--36749331 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
36749269 AGTGGTGAGA
36749279 CCGAAAGGGTATCTTAAGTGGTAGTC
1 CCGAAAGGGTATCTTAAGTGGTAGTC
36749305 CCGAAAGGGTATCTTAAGTGGTAGTC
1 CCGAAAGGGTATCTTAAGTGGTAGTC
36749331 C
1 C
36749332 TTAGTGAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (26 bp):
CCGAAAGGGTATCTTAAGTGGTAGTC
Found at i:36755140 original size:31 final size:30
Alignment explanation
Indices: 36755092--36755153 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
36755082 GTGAAATTTA
**
36755092 ATCATTTTATTGAAATAATATTTTAATTAAT
1 ATCATTTTATTGAAATAA-ATGATAATTAAT
**
36755123 ATCATTTTATTTTAATAAATGATAATTAAT
1 ATCATTTTATTGAAATAAATGATAATTAAT
36755153 A
1 A
36755154 GACTTGCTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (30 bp):
ATCATTTTATTGAAATAAATGATAATTAAT
Found at i:36758902 original size:31 final size:30
Alignment explanation
Indices: 36758854--36758915 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
36758844 GTGAAATTTA
**
36758854 ATCATTTTATTGAAATAATATTTTAATTAAT
1 ATCATTTTATTGAAATAA-ATGATAATTAAT
**
36758885 ATCATTTTATTTTAATAAATGATAATTAAT
1 ATCATTTTATTGAAATAAATGATAATTAAT
36758915 A
1 A
36758916 GACTTGCTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (30 bp):
ATCATTTTATTGAAATAAATGATAATTAAT
Found at i:36762009 original size:468 final size:465
Alignment explanation
Indices: 36761118--36762488 Score: 1610
Period size: 468 Copynumber: 2.9 Consensus size: 465
36761108 TGGGTTGCAC
* * * * *
36761118 GAAGCAAGAGTTTGGTATGTGTAGAGTGAGGTTTCATTGCTATGGAACATGTGATTGAGTTGCTA
1 GAAGCAAGAGTTTGGGATGTGCAGAGCGAGATTTCATTGCTATGGAGCATGTGATTGAGTTGCTA
* * * *
36761183 GAAGTAGGAGTTTGCTATTATGAAGTAGGAATTC-ACATTA-TTCAGAGAAGGATTTCATTACTT
66 -AAGTAGGAGTTTGCTATTATAAAGTAGGAGTTCGA-ATTACTT-AGAGAAGGATTTCACTATTT
* * *
36761246 GGGTGGAAGCAAGA-CATTGGGTTAGGTGGAGGAAGATTTTATTGCTATGGAGTAAGAGTTCGGG
128 GGGTGGGAGCAAGAGC-TTGGG-TAGGTGGAGGAAGATTTTATTGTTATGGAGCAAGAGTTCGGG
* * * * *
36761310 TTTAGCAGAGTAGGAGTTCAAGCTATGCCGTGTAAGATTTCACTAATAAGAAGGAGTTTGGGTTA
191 TTTAGCAGAATAGGAGTTCAAACTATGTCGTGTAAGATTTCACTAATATGGAGGAGTTTGGG-T-
* * *
36761375 TATGG-AGTATGATTTTATCATTGTGGAGCAATAGTTGAAGATGCTTGGAGTAAGATTTAATTGT
254 TATGGAAGTAAGATTTTACCATTGTGGAGCAAGAGTTGAAGATGCTTGGAGTAAGATTTAATTGT
* * * **
36761439 TATGGAGCAGAAGTTTGCATTGCTCGGAGTAGGATTTATGGAGCAATAGTTTAGGCTATACGAAA
319 TATGGAGCAGAAGTTTGCATTGCTCGAAGTAGGATTTATGGAGCAAGAATTTAGGCTGCACGAAA
* * * * *
36761504 CAACATTTTACTATTATCGACCTATAATTTGGGTTGCATGAAGCAAGAGTTTAGGCTAGGCAAAC
384 TAACATTTCACTATTATGGACCTAGAATTTGGGTTGCATGAAGCAAGAGTTTAGGCTAGACAAAC
36761569 TA-GAATCTCATTGTTAT
449 TATG-ATCTCATTGTTAT
* * *
36761586 GAAGCAAGATTTTGGGATGTGCAGAGCGATATTTCATTGCTATGGAGCATGTGATTAAGTTGCTC
1 GAAGCAAGAGTTTGGGATGTGCAGAGCGAGATTTCATTGCTATGGAGCATGTGATTGAGTTGCT-
* * * * *
36761651 AAAGTAGGGGTTTGCCATTATTAAGTAGGAGTTCGAATTACTTAAAAAAGGATTTCACTATTTGG
65 AAAGTAGGAGTTTGCTATTATAAAGTAGGAGTTCGAATTACTTAGAGAAGGATTTCACTATTTGG
* * * **
36761716 GTGGGAGTAAGAGCTTGGGCTAGGTGGAGAAAGATTTTATTTTTATGGAGCAAGAGTTCGAATTT
130 GTGGGAGCAAGAGCTTGGG-TAGGTGGAGGAAGATTTTATTGTTATGGAGCAAGAGTTCGGGTTT
* * *
36761781 AGCAGAATAGGTGTTCAAACTATGTCGTGTAAGATTTCATTCATATGGAGGAGTTTGGGTTATGG
194 AGCAGAATAGGAGTTCAAACTATGTCGTGTAAGATTTCACTAATATGGAGGAGTTTGGGTTATGG
* * *** * *
36761846 AAAGTAAGATTTTACCACTATGGAGTTGGAGTAGAAGATGCTTGGAGTAAGATTTATTTGTTATG
259 -AAGTAAGATTTTACCATTGTGGAGCAAGAGTTGAAGATGCTTGGAGTAAGATTTAATTGTTATG
** * * * * *** *
36761911 GAGTGGAAGTTTGCATTGCTCGAAGTAGGATTTATAGAGCAAGAACTAAGGCTGCAAGGTGTAAG
323 GAGCAGAAGTTTGCATTGCTCGAAGTAGGATTTATGGAGCAAGAATTTAGGCTGCACGAAATAAC
* * * * *
36761976 ATTTCACTATTATGGACCTAGAATTTAGGTTGCATGAAGTAAGAGTTTGGGCTAGACGAAGTATG
388 ATTTCACTATTATGGACCTAGAATTTGGGTTGCATGAAGCAAGAGTTTAGGCTAGACAAACTATG
36762041 ATCTCATTGTTAT
453 ATCTCATTGTTAT
* ** * *
36762054 AAAGCAAGAGTTAAGGATGTGTC-GAACGAGATTTCATTGCTATAGAGCATGTGATTGAGTTGCT
1 GAAGCAAGAGTTTGGGATGTG-CAGAGCGAGATTTCATTGCTATGGAGCATGTGATTGAGTTGC-
* * * * * * *
36762118 TGAAGTAAGAGTCTGTTATTATAAAGTAGGAGTTCGCATTACTTAGAGAAGAATTTCACTGTTTG
64 TAAAGTAGGAGTTTGCTATTATAAAGTAGGAGTTCGAATTACTTAGAGAAGGATTTCACTATTTG
* * * * *
36762183 GGAGGGAACAAGAGCTTGGGTTGTGTGGAGGAAGATTTTATTGTTATAGAGCAAGAGTTTGGGTT
129 GGTGGGAGCAAGAGCTTGGGTAG-GTGGAGGAAGATTTTATTGTTATGGAGCAAGAGTTCGGGTT
* * * *
36762248 TAGCA-AAGTAGGAGTTCGATCTATGTCATGTAAGATTTCACTAATACT-GAGGAGTTTGGATTA
193 TAGCAGAA-TAGGAGTTCAAACTATGTCGTGTAAGATTTCACTAATA-TGGAGGAGTTTGGGTTA
* * * * * * *
36762311 -AG-ATTAGGATTTCACCATTGTGAAGCACGATTTGAAGATGCTTGGAGTAAGATTTAATTGTTA
256 TGGAAGTAAGATTTTACCATTGTGGAGCAAGAGTTGAAGATGCTTGGAGTAAGATTTAATTGTTA
* * * *
36762374 TGGAGCAGAAGTTTGCATTGCTCAAAGTAAGATTTATGGATCAAGATTTTAGGCTGCACGAAATA
321 TGGAGCAGAAGTTTGCATTGCTCGAAGTAGGATTTATGGAGCAAGAATTTAGGCTGCACGAAATA
* *
36762439 ATATTTCACTATTATGGACCTCGAATTTGGGTTGCATGAAGCAAGAGTTT
386 ACATTTCACTATTATGGACCTAGAATTTGGGTTGCATGAAGCAAGAGTTT
36762489 GGGATGTGCG
Statistics
Matches: 756, Mismatches: 135, Indels: 27
0.82 0.15 0.03
Matches are distributed among these distances:
465 147 0.19
466 5 0.01
467 6 0.01
468 589 0.78
469 9 0.01
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (465 bp):
GAAGCAAGAGTTTGGGATGTGCAGAGCGAGATTTCATTGCTATGGAGCATGTGATTGAGTTGCTA
AAGTAGGAGTTTGCTATTATAAAGTAGGAGTTCGAATTACTTAGAGAAGGATTTCACTATTTGGG
TGGGAGCAAGAGCTTGGGTAGGTGGAGGAAGATTTTATTGTTATGGAGCAAGAGTTCGGGTTTAG
CAGAATAGGAGTTCAAACTATGTCGTGTAAGATTTCACTAATATGGAGGAGTTTGGGTTATGGAA
GTAAGATTTTACCATTGTGGAGCAAGAGTTGAAGATGCTTGGAGTAAGATTTAATTGTTATGGAG
CAGAAGTTTGCATTGCTCGAAGTAGGATTTATGGAGCAAGAATTTAGGCTGCACGAAATAACATT
TCACTATTATGGACCTAGAATTTGGGTTGCATGAAGCAAGAGTTTAGGCTAGACAAACTATGATC
TCATTGTTAT
Found at i:36762731 original size:57 final size:57
Alignment explanation
Indices: 36762643--36762758 Score: 178
Period size: 57 Copynumber: 2.0 Consensus size: 57
36762633 GAAATGAAAA
* * * *
36762643 ATCTTAACTAATATATAATATTAGTGTTTTAGGTAACTAATCTCCTAAGAATCAACT
1 ATCTTAACTAATATAGAATATCAATATTTTAGGTAACTAATCTCCTAAGAATCAACT
* *
36762700 ATCTTAACTAATATAGAATATCAATATTTTAGGTAACTAGTCTCCTAAGAATCAGCT
1 ATCTTAACTAATATAGAATATCAATATTTTAGGTAACTAATCTCCTAAGAATCAACT
36762757 AT
1 AT
36762759 ATAGTGTGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (57 bp):
ATCTTAACTAATATAGAATATCAATATTTTAGGTAACTAATCTCCTAAGAATCAACT
Found at i:36774944 original size:21 final size:21
Alignment explanation
Indices: 36774904--36774944 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
36774894 ATTTTTATTT
36774904 TTATTTTTTTATCCTTATGTAA
1 TTATTTTTTTAT-CTTATGTAA
36774926 TTATTATTTTTAT-TTATGT
1 TTATT-TTTTTATCTTATGT
36774945 TGGTATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (21 bp):
TTATTTTTTTATCTTATGTAA
Found at i:36781411 original size:138 final size:137
Alignment explanation
Indices: 36781088--36781478 Score: 424
Period size: 138 Copynumber: 2.8 Consensus size: 137
36781078 TTGAAGTAGT
* * * *
36781088 AGTGGGTCAGATTGAAACTAAAGTGACGAATCTTCTTTGCCTGAAGTTGTAGTGGAGCAAGATGA
1 AGTGGGTCAAAATGAAACTAAAGTGACGAATCTTATAT-CCTGAAGTTGTAGTGGAGCAAGATGA
* * * * * *
36781153 AACTATAAATCATATATCTCTGAAGTTGCAGTGGATCGGATTGAAGATACAATTCTTATACCCCT
65 AGCTACAAATCATATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACAATTCCTATACACCT
*
36781218 GAAGTTGC
130 GAAGTTAC
* * * ** * * * *
36781226 AGTGGGTCGAAATGAAATTATAGTGGTGAATCTTATCTCCCTAAAGTTGCAGTGTAGCAAGATGA
1 AGTGGGTCAAAATGAAACTAAAGTGACGAATCTTATAT-CCTGAAGTTGTAGTGGAGCAAGATGA
* * * *
36781291 AGCTACAAATCCTATATCCCTGAAGTTACAGTGGATCAGATTGAAGCTACAATTCCTATACATCT
65 AGCTACAAATCATATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACAATTCCTATACACCT
36781356 GAAGTTAC
130 GAAGTTAC
* * * *
36781364 AGTGGGTCAAAATGAAACTACAGTGACAAATCCTATATCTCTGAAGTTGTAGTGGATCAA-ATTG
1 AGTGGGTCAAAATGAAACTAAAGTGACGAATCTTATATC-CTGAAGTTGTAGTGGAGCAAGA-TG
* * * * * * *
36781428 AAGCTGCAAATCTTATAACCCTAAAGTTGCAATGGGTCGGATTGAATCTAC
64 AAGCTACAAATCATATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTAC
36781479 CATAGTGAGT
Statistics
Matches: 206, Mismatches: 45, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
137 2 0.01
138 204 0.99
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (137 bp):
AGTGGGTCAAAATGAAACTAAAGTGACGAATCTTATATCCTGAAGTTGTAGTGGAGCAAGATGAA
GCTACAAATCATATATCCCTGAAGTTGCAGTGGATCGGATTGAAGCTACAATTCCTATACACCTG
AAGTTAC
Found at i:36781464 original size:94 final size:94
Alignment explanation
Indices: 36781295--36781465 Score: 227
Period size: 94 Copynumber: 1.8 Consensus size: 94
36781285 AGATGAAGCT
* * * *
36781295 ACAAATCCTATATCCCTGAAGTTACAGTGGATCAGATTGAAGCTACAATTCCTATACATCTGAAG
1 ACAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTGAAGCTACAAATCCTATACACCTAAAG
*
36781360 TTACAGTGGGTCAAAATGAAACTACAGTG
66 TTACAATGGGTCAAAATGAAACTACAGTG
* ** * *
36781389 ACAAATCCTATATCTCTGAAGTTGTAGTGGATCAAATTGAAGCTGCAAATCTTATA-ACCCTAAA
1 ACAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTGAAGCTACAAATCCTATACA-CCTAAA
*
36781453 GTTGCAATGGGTC
65 GTTACAATGGGTC
36781466 GGATTGAATC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
93 1 0.02
94 64 0.98
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (94 bp):
ACAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTGAAGCTACAAATCCTATACACCTAAAG
TTACAATGGGTCAAAATGAAACTACAGTG
Found at i:36781509 original size:94 final size:94
Alignment explanation
Indices: 36781332--36781982 Score: 621
Period size: 94 Copynumber: 6.9 Consensus size: 94
36781322 TGGATCAGAT
* ** * * * ** *
36781332 TGAAGCTACAATTCCTATACATCTGAAGTTACAGTGGGTCAAAATGAAACTA-CAGT-GACAAAT
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCA-TAG-CGAAT
* * * * * *
36781395 CCTATATCTCTGAAGTTGTAGTGGATCAA-A
64 CTTATCTCCCTAAAGTTGTAGTAGAGCAAGA
* * * * * * * *
36781425 TTGAAGCTGCAAATCTTATAACCCTAAAGTTGCAATGGGTCGGATTGAA-TCTACCATAGTGAGT
1 -TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGT-TACCATAGCGAAT
* *
36781489 CTTATCTCCCTAAAGCTGTAGTGGAGCAAGA
64 CTTATCTCCCTAAAGTTGTAGTAGAGCAAGA
* * * *
36781520 TGGAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGATTAAAGTTACCATAGCGAGTCT
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGCGAATCT
* *
36781585 TATCTCTCTAAAGTTGTAATAGAGCAAGA
66 TATCTCCCTAAAGTTGTAGTAGAGCAAGA
* * * * ** * * * *
36781614 TGAAGTTACAAATCCAATACCCTTTAAGTTATAGTAGGTCAGACTAAAGTTACCATAACGAATCT
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGCGAATCT
* * * * *
36781679 TATCCCCCTGAAGTT-AAGTGGAGTAAGA
66 TATCTCCCTAAAGTTGTAGTAGAGCAAGA
* **
36781707 TTG-AGCTACAAATCGTATACCCCTGAAGTTATAGTGGGTCAGATTGAAGTTACCATAGCGAATC
1 -TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGCGAATC
* *
36781771 TTATCTCCCTGAAGTTGTAGTAAAGCAAGA
65 TTATCTCCCTAAAGTTGTAGTAGAGCAAGA
* ** * * *
36781801 TGAAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAACTACAAATGGTGAATC
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTAC-CATAGCGAATC
* **
36781866 TTATCTCTCTAAAGTTACAGTAGAGCAAGA
65 TTATCTCCCTAAAGTTGTAGTAGAGCAAGA
* * *
36781896 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGGTCAGATTGAAATTACCATAGCGAAACT
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGCGAATCT
* *
36781961 TATCTCCCTGAAGTTGCAGTAG
66 TATCTCCCTAAAGTTGTAGTAG
36781983 GTCAGATTGA
Statistics
Matches: 457, Mismatches: 91, Indels: 18
0.81 0.16 0.03
Matches are distributed among these distances:
93 78 0.17
94 291 0.64
95 88 0.19
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (94 bp):
TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGCGAATCT
TATCTCCCTAAAGTTGTAGTAGAGCAAGA
Found at i:36781745 original size:187 final size:189
Alignment explanation
Indices: 36781488--36781976 Score: 610
Period size: 187 Copynumber: 2.6 Consensus size: 189
36781478 CCATAGTGAG
* * ** *
36781488 TCTTATCTCCCTAAAGCTGTAGTGGAGCAAGATGGAGCTACAAATCCTATACCCCTGAAGTTGCA
1 TCTTATCCCCCTAAAGTTACAGTGGAGCAAGATTGAGCTACAAATCCTATACCCCTGAAGTTGCA
* * * * *
36781553 GTGGGTTAGATTAAAGTTACCATAGCGAGTCTTATCTCTCTAAAGTTGTAATAGAGCAAGATGAA
66 GTGGGTCAGATTAAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTGTAATAAAGCAAGATGAA
* * * * *
36781618 GTTACAAATCCAATACCCTTTAAGTTATAGTAGGTCAGACT-AAAGTTAC-CATAACGAA
131 GCTACAAATCCAATACCCCTGAAGTTATAGTAGGTCAGACTGAAA-CTACAAATAACGAA
* * * **
36781676 TCTTATCCCCCTGAAGTTA-AGTGGAGTAAGATTGAGCTACAAATCGTATACCCCTGAAGTTATA
1 TCTTATCCCCCTAAAGTTACAGTGGAGCAAGATTGAGCTACAAATCCTATACCCCTGAAGTTGCA
* *
36781740 GTGGGTCAGATTGAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTGTAGTAAAGCAAGATGAA
66 GTGGGTCAGATTAAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTGTAATAAAGCAAGATGAA
* * * * ***
36781805 GCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAACTACAAATGGTGAA
131 GCTACAAATCCAATACCCCTGAAGTTATAGTAGGTCAGACTGAAACTACAAATAACGAA
* * *
36781864 TCTTATCTCTCTAAAGTTACAGTAGAGCAAGA-TGAAGCTACAAATCCTATACCCCTGAAGTTGC
1 TCTTATCCCCCTAAAGTTACAGTGGAGCAAGATTG-AGCTACAAATCCTATACCCCTGAAGTTGC
* *
36781928 AGTAGGTCAGATTGAAA-TTACCATAGCGAAACTTATCTCCCTGAAGTTG
65 AGTGGGTCAGATT-AAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTG
36781977 CAGTAGGTCA
Statistics
Matches: 257, Mismatches: 39, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
187 135 0.53
188 41 0.16
189 79 0.31
190 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (189 bp):
TCTTATCCCCCTAAAGTTACAGTGGAGCAAGATTGAGCTACAAATCCTATACCCCTGAAGTTGCA
GTGGGTCAGATTAAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTGTAATAAAGCAAGATGAA
GCTACAAATCCAATACCCCTGAAGTTATAGTAGGTCAGACTGAAACTACAAATAACGAA
Found at i:36781751 original size:43 final size:44
Alignment explanation
Indices: 36781288--36781857 Score: 163
Period size: 44 Copynumber: 12.3 Consensus size: 44
36781278 TGTAGCAAGA
* * * *
36781288 TGAAGCTACAAATCCTATATCCCTGAAGTTACAGTGGATCAGAT
1 TGAAGCTACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
* * ** * * *
36781332 TGAAGCTACAATTCCTATACATCTGAAGTTACAGTGGGTCAAAA
1 TGAAGCTACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
* * * * * * *
36781376 TGAAACTACAGTGACAAATCCTATATCTCTGAAGTTGTAGTGGATCAAAT
1 TG-AA--GC--T-ACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
* * * ** * *
36781426 TGAAGCTGCAAATCTTATAACCCTAAAGTTGCAATGGGTCGGAT
1 TGAAGCTACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
* * * *
36781470 TGAATCTACCATAGTGAGTCTTAT-CTCCCTAAAGCTGTAGTGGAG-CAAGA-
1 TGAAGCTA-CA-A---A-TCTTATAC-CCCTGAAGTTATAGTGG-GTC-AGAT
* * ** *
36781520 TGGAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAT
1 TGAAGCTACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
* * * * * * *
36781564 TAAAGTTACCATAGCGAGTCTTAT-CTCTCTAAAGTTGTAATAGAG-CAAGA-
1 TGAAGCTA-CA-A---A-TCTTATAC-CCCTGAAGTTATAGT-GGGTC-AGAT
* ** * * * *
36781614 TGAAGTTACAAATCCAATACCCTTTAAGTTATAGTAGGTCAGAC
1 TGAAGCTACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
* * * *
36781658 TAAAGTTACCATAACGAATCTTATCCCCCTGAAGTTA-AGTGGAGTAAGAT
1 TGAAG----C-T-ACAAATCTTATACCCCTGAAGTTATAGTGG-GTCAGAT
*
36781708 TG-AGCTACAAATCGTATACCCCTGAAGTTATAGTGGGTCAGAT
1 TGAAGCTACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
* * **
36781751 TGAAGTTACCATAGCGAATCTTAT-CTCCCTGAAGTTGTAGTAAAG-CAAGA-
1 TGAAG----C-TA-CAAATCTTATAC-CCCTGAAGTTATAGT-GGGTC-AGAT
* *
36781801 TGAAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGAT
1 TGAAGCTACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
*
36781845 TGAAACTACAAAT
1 TGAAGCTACAAAT
36781858 GGTGAATCTT
Statistics
Matches: 389, Mismatches: 86, Indels: 102
0.67 0.15 0.18
Matches are distributed among these distances:
43 41 0.11
44 159 0.41
45 15 0.04
46 3 0.01
47 2 0.01
48 3 0.01
49 20 0.05
50 134 0.34
51 12 0.03
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (44 bp):
TGAAGCTACAAATCTTATACCCCTGAAGTTATAGTGGGTCAGAT
Found at i:36781854 original size:44 final size:44
Alignment explanation
Indices: 36781056--36781857 Score: 150
Period size: 44 Copynumber: 17.3 Consensus size: 44
36781046 AACAGATCGG
* * *
36781056 TGAAATCT-CAAATCCTATACCCTTGAAGTAGTAGTGGGTCAGAT
1 TGAAA-CTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* * ***
36781100 TGAAACTAAAGTGACGAATCTTCTTTGCCTGAAGTTGTAGTGGAG-CAAGA-
1 TGAAAC-----T-ACAAATCTTATACCCCTGAAGTTGTAGTGG-GTC-AGAT
* * * * * * *
36781150 TGAAACTATAAATCATATATCTCTGAAGTTGCAGTGGATCGGAT
1 TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* * *
36781194 TGAAGA-TACAATTCTTATACCCCTGAAGTTGCAGTGGGTC-GAAA
1 TGAA-ACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAG-AT
* * * * *
36781238 TGAAATTATAGTGGTGAATCTTAT-CTCCCTAAAGTTGCAGTGTAG-CAAGA-
1 TGAAACTACA------AATCTTATAC-CCCTGAAGTTGTAGTG-GGTC-AGAT
* * * ** *
36781288 TGAAGCTACAAATCCTATATCCCTGAAGTTACAGTGGATCAGAT
1 TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* * * ** ** * *
36781332 TGAAGCTACAATTCCTATACATCTGAAGTTACAGTGGGTCAAAA
1 TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* * * * *
36781376 TGAAACTACAGTGACAAATCCTATATCTCTGAAGTTGTAGTGGATCAAAT
1 TG-AA--AC--T-ACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* * * * * * *
36781426 TGAAGCTGCAAATCTTATAACCCTAAAGTTGCAATGGGTCGGAT
1 TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* * *
36781470 TGAATCTACCATAGTGAGTCTTAT-CTCCCTAAAGCTGTAGTGGAG-CAAGA-
1 TGAAACTA-CA-A---A-TCTTATAC-CCCTGAAGTTGTAGTGG-GTC-AGAT
* * * * *
36781520 TGGAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAT
1 TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* * * * *
36781564 T-AAAGTTACCATAGCGAGTCTTAT-CTCTCTAAAGTTGTAATAGAG-CAAGA-
1 TGAAA-CTA-CA-A---A-TCTTATAC-CCCTGAAGTTGTAGT-GGGTC-AGAT
** ** * * * * *
36781614 TGAAGTTACAAATCCAATACCCTTTAAGTTATAGTAGGTCAGAC
1 TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* * * * *
36781658 TAAAGTTACCATAACGAATCTTATCCCCCTGAAGTT-AAGTGGAGTAAGAT
1 TGAA---A-C-T-ACAAATCTTATACCCCTGAAGTTGTAGTGG-GTCAGAT
* * *
36781708 TG-AGCTACAAATCGTATACCCCTGAAGTTATAGTGGGTCAGAT
1 TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
* **
36781751 TGAAGTTACCATAGCGAATCTTAT-CTCCCTGAAGTTGTAGTAAAG-CAAGA-
1 TGAA---A-C-TA-CAAATCTTATAC-CCCTGAAGTTGTAGT-GGGTC-AGAT
* *
36781801 TGAAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGAT
1 TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
36781845 TGAAACTACAAAT
1 TGAAACTACAAAT
36781858 GGTGAATCTT
Statistics
Matches: 548, Mismatches: 130, Indels: 160
0.65 0.16 0.19
Matches are distributed among these distances:
43 49 0.09
44 245 0.45
45 17 0.03
46 3 0.01
47 2 0.00
48 4 0.01
49 20 0.04
50 187 0.34
51 20 0.04
52 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
TGAAACTACAAATCTTATACCCCTGAAGTTGTAGTGGGTCAGAT
Found at i:36781972 original size:282 final size:282
Alignment explanation
Indices: 36781313--36781993 Score: 736
Period size: 282 Copynumber: 2.4 Consensus size: 282
36781303 TATATCCCTG
* * * ** * *
36781313 AAGTTACAGTGGATC-AGATTGAAGCTACAATTCCTATACATCTGAAGTTACAGTGGGTCAAAAT
1 AAGTTACAGTAGAGCAAGA-TGAAGCTACAAATCCTATACCCCTGAAGTTACAGTAGGTCAGAAT
* * * * * *
36781377 GAAACTA-CAGT-GAC-AAATCCTATATCTCTGAAGTTGTAGTGGATCAAATTGAAGCTGCAAAT
65 GAAATTACCA-TAG-CGAAA-CTTATCTCCCTGAAGTTGAAGTGGATCAAATTGAAGCTACAAAT
* * * * *
36781439 CTTATAACCCTAAAGTTGCAATGGGTCGGATTGAATCTACCATAGTGAGTCTTATCTCCCTAAAG
127 CGTATAACCCTAAAGTTACAATGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCCCTAAAG
** * *
36781504 CTGTAGTGGAGCAAGATGGAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGATTAAAG
192 CTGTAGTAAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAG
* * *
36781569 TTACCATAGCGAGTCTTATCTCTCTA
257 CTACAATAGCGAATCTTATCTCTCTA
** * * * * * * *
36781595 AAGTTGTAATAGAGCAAGATGAAGTTACAAATCCAATACCCTTTAAGTTATAGTAGGTCAGACT-
1 AAGTTACAGTAGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTACAGTAGGTCAGAATG
* * *
36781659 AAAGTTACCATAACGAATCTTATCCCCCTGAAGTT-AAGTGGAGT-AAGATTG-AGCTACAAATC
66 AAA-TTACCATAGCGAAACTTATCTCCCTGAAGTTGAAGTGGA-TCAA-ATTGAAGCTACAAATC
* * * * *
36781721 GTATACCCCTGAAGTTATAGTGGGTCAGATTGAAGT-TACCATAGCGAATCTTATCTCCCTGAAG
128 GTATAACCCTAAAGTTACAATGGGTCAGATTGAA-TCTACCATAGCGAATCTTATCTCCCTAAAG
* *
36781785 TTGTAGTAAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAA
192 CTGTAGTAAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATT-AAA
* *
36781850 -CTACAAATGGTGAATCTTATCTCTCTA
256 GCTAC-AATAGCGAATCTTATCTCTCTA
* *
36781877 AAGTTACAGTAGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGGTCAGATTG
1 AAGTTACAGTAGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTACAGTAGGTCAGAATG
* *
36781942 AAATTACCATAGCGAAACTTATCTCCCTGAAGTTGCAGTAGG-TCAGATTGAA
66 AAATTACCATAGCGAAACTTATCTCCCTGAAGTTGAAGT-GGATCAAATTGAA
36781994 ATTACCATAG
Statistics
Matches: 323, Mismatches: 61, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
281 131 0.41
282 175 0.54
283 15 0.05
284 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (282 bp):
AAGTTACAGTAGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTACAGTAGGTCAGAATG
AAATTACCATAGCGAAACTTATCTCCCTGAAGTTGAAGTGGATCAAATTGAAGCTACAAATCGTA
TAACCCTAAAGTTACAATGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCCCTAAAGCTGT
AGTAAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGCTAC
AATAGCGAATCTTATCTCTCTA
Found at i:36782044 original size:50 final size:50
Alignment explanation
Indices: 36781916--36782030 Score: 230
Period size: 50 Copynumber: 2.3 Consensus size: 50
36781906 AATCCTATAC
36781916 CCCTGAAGTTGCAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
1 CCCTGAAGTTGCAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
36781966 CCCTGAAGTTGCAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
1 CCCTGAAGTTGCAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
36782016 CCCTGAAGTTGCAGT
1 CCCTGAAGTTGCAGT
36782031 GGAACAAAAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 65 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (50 bp):
CCCTGAAGTTGCAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
Found at i:36782087 original size:144 final size:145
Alignment explanation
Indices: 36781808--36782122 Score: 350
Period size: 144 Copynumber: 2.2 Consensus size: 145
36781798 AGATGAAGCT
* * * * * *
36781808 ACAAATCCTATAC-CCCTGAAGTTGTAGTGGGTCAGATTGAAACTACAAATGGTGAATCTTATCT
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTAGGTCAGATTGAAACTACAAATAGCGAAACTTATCT
* * * * *
36781872 CTCTAAAGTTACAGTAGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGGTCA
65 CCCTAAAGTTACAGTAGAACAAAATGAAACTACAAATCCTACACCCCTGAAGTTGCAGTAGGTCA
* * *
36781937 GATTGAAATTACCATA
130 GATTGAAACTACAACA
* * *
36781953 GCGAAA-CTTATCTCCCTGAAGTTGCAGTAGGTCAGATTGAAATTAC-CATAGCGAAACTTATCT
1 AC-AAATCTTATCTCCCTGAAGTTGCAGTAGGTCAGATTGAAACTACAAATAGCGAAACTTATCT
* * * * *
36782016 CCCTGAAGTTGCAGTGGAACAAAATGAAACTACAAATCCTACACCCCTGAAGTTGTA-TTGAGTC
65 CCCTAAAGTTACAGTAGAACAAAATGAAACTACAAATCCTACACCCCTGAAGTTGCAGTAG-GTC
* *
36782080 GGGTTGAAACTACAACA
129 AGATTGAAACTACAACA
*
36782097 ACAAATCTTATCTCCTTGAAGTTGCA
1 ACAAATCTTATCTCCCTGAAGTTGCA
36782123 ATAGAGCAAG
Statistics
Matches: 140, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
143 5 0.04
144 97 0.69
145 35 0.25
146 3 0.02
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (145 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTAGGTCAGATTGAAACTACAAATAGCGAAACTTATCTC
CCTAAAGTTACAGTAGAACAAAATGAAACTACAAATCCTACACCCCTGAAGTTGCAGTAGGTCAG
ATTGAAACTACAACA
Found at i:36789573 original size:3 final size:3
Alignment explanation
Indices: 36789565--36789593 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
36789555 CAAGGATCCT
36789565 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
36789594 TCCTGCAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:36792750 original size:11 final size:11
Alignment explanation
Indices: 36792729--36792761 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
36792719 ATTTATTTTG
36792729 AAATA-AAAAA
1 AAATATAAAAA
36792739 AAATATAAAAA
1 AAATATAAAAA
*
36792750 AAATTTAAAAA
1 AAATATAAAAA
36792761 A
1 A
36792762 TGGAGCCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AAATATAAAAA
Found at i:36802924 original size:24 final size:24
Alignment explanation
Indices: 36802897--36802946 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
36802887 TCTACCAAAG
36802897 ATTTTAAAGCATGAAGTCAAAACA
1 ATTTTAAAGCATGAAGTCAAAACA
36802921 ATTTTAAAGCATGAAGTCAAAACA
1 ATTTTAAAGCATGAAGTCAAAACA
36802945 AT
1 AT
36802947 CACTTATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (24 bp):
ATTTTAAAGCATGAAGTCAAAACA
Found at i:36805395 original size:18 final size:18
Alignment explanation
Indices: 36805374--36805416 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
36805364 ATTTTACATA
*
36805374 TTTTAAATTATTCTAATT
1 TTTTAAATTATTATAATT
* *
36805392 TTTTAAGTTATTATTATT
1 TTTTAAATTATTATAATT
36805410 TTTTAAA
1 TTTTAAA
36805417 AATATATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTAAATTATTATAATT
Found at i:36806845 original size:32 final size:32
Alignment explanation
Indices: 36806804--36806872 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
36806794 TAAATGCTAT
* *
36806804 TTAAATAATTGACTATAATGATACATAAAATA
1 TTAAATAATTGAATATAATGATACAAAAAATA
* *
36806836 TTAAATAATTTAATATAATGATATAAAAAATA
1 TTAAATAATTGAATATAATGATACAAAAAATA
36806868 -TAAAT
1 TTAAAT
36806873 TAATCTAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 5 0.15
32 28 0.85
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (32 bp):
TTAAATAATTGAATATAATGATACAAAAAATA
Found at i:36807462 original size:17 final size:17
Alignment explanation
Indices: 36807442--36807480 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
36807432 ATAAAATTAT
36807442 TAAAAAATTAAAAAATA
1 TAAAAAATTAAAAAATA
* * *
36807459 TAAATATTTAGAAAATA
1 TAAAAAATTAAAAAATA
36807476 TAAAA
1 TAAAA
36807481 CCAAGAGGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (17 bp):
TAAAAAATTAAAAAATA
Found at i:36807466 original size:24 final size:26
Alignment explanation
Indices: 36807431--36807480 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
36807421 CAAGAAATGC
36807431 AATAAAATTA-TTAAAAAAT-TAAAA
1 AATAAAATTATTTAAAAAATATAAAA
*
36807455 AATATAAA-TATTTAGAAAATATAAAA
1 AATA-AAATTATTTAAAAAATATAAAA
36807481 CCAAGAGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 6 0.27
25 11 0.50
26 5 0.23
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (26 bp):
AATAAAATTATTTAAAAAATATAAAA
Found at i:36818643 original size:24 final size:25
Alignment explanation
Indices: 36818583--36818652 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
36818573 AGCGTCCCGA
* *
36818583 TATATGGCTC-TCCAGAACTTCCTGT
1 TATATGGCTCTTAC-GAGCTTCCTGT
* *
36818608 TATATGGTTCTTGCGAGCTTCCTGT
1 TATATGGCTCTTACGAGCTTCCTGT
*
36818633 T-TATGGCTCTTATGAGCTTC
1 TATATGGCTCTTACGAGCTTC
36818653 TCGATAATTG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 16 0.42
25 20 0.53
26 2 0.05
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.41
Consensus pattern (25 bp):
TATATGGCTCTTACGAGCTTCCTGT
Found at i:36818667 original size:25 final size:24
Alignment explanation
Indices: 36818635--36818720 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 24
36818625 CTTCCTGTTT
36818635 ATGGCTCTTATGAGCTTCTCGATA
1 ATGGCTCTTATGAGCTTCTCGATA
36818659 ATTGGCTCTTCGGA-GAGCTTCTCGATA
1 A-TGGCTCTT---ATGAGCTTCTCGATA
*
36818686 ACTGACTCTTATGAGCTTC-CTGATTA
1 A-TGGCTCTTATGAGCTTCTC-GA-TA
36818712 ATGGCTCTT
1 ATGGCTCTT
36818721 CAAAGCTTCC
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
24 3 0.06
25 24 0.46
26 3 0.06
27 21 0.40
28 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (24 bp):
ATGGCTCTTATGAGCTTCTCGATA
Found at i:36818809 original size:25 final size:25
Alignment explanation
Indices: 36818769--36818827 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
36818759 TATGGCTCTT
**
36818769 ATGAGCTTCTTGTTATATAGCTCGA
1 ATGAGCTTCTCATTATATAGCTCGA
*
36818794 ATGAGCTTCTCATTATATGGCTCGA
1 ATGAGCTTCTCATTATATAGCTCGA
*
36818819 AAGAGCTTC
1 ATGAGCTTC
36818828 CCGTTTACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (25 bp):
ATGAGCTTCTCATTATATAGCTCGA
Found at i:36822571 original size:21 final size:21
Alignment explanation
Indices: 36822530--36822582 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
36822520 CTACAACTTA
* * *
36822530 AAGCGGAGGCAGCAGCGAGGG
1 AAGCAGAGGCAGCAACAAGGG
36822551 AAGCAGAGGCAGCAACAAGGG
1 AAGCAGAGGCAGCAACAAGGG
* *
36822572 CATCAGAGGCA
1 AAGCAGAGGCA
36822583 ACAAGAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.36, C:0.21, G:0.42, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACAAGGG
Found at i:36822944 original size:43 final size:44
Alignment explanation
Indices: 36822896--36822993 Score: 135
Period size: 43 Copynumber: 2.2 Consensus size: 44
36822886 GTGTTTTCCC
* * *
36822896 ACAAACGCCATTATAGAACATGATCTTTAGTAGCGATTTTA-CT
1 ACAAACGCCACTAAAGAACATGATCTTTAGTAGCGATTCTAGCT
* * *
36822939 ACAAACGCCGCTAAAGAACATGATCTTTTGTGGCGATTCTAGCT
1 ACAAACGCCACTAAAGAACATGATCTTTAGTAGCGATTCTAGCT
36822983 ACAAACGCCAC
1 ACAAACGCCAC
36822994 AACATGCTCG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 35 0.74
44 12 0.26
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (44 bp):
ACAAACGCCACTAAAGAACATGATCTTTAGTAGCGATTCTAGCT
Found at i:36824448 original size:23 final size:23
Alignment explanation
Indices: 36824422--36824466 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
36824412 CTTAAACTTT
* *
36824422 AAAAACCCTTACAAACCCTAAAC
1 AAAAACCCTTAAAAAACCTAAAC
36824445 AAAAACCCTTAAAAAACCTAAA
1 AAAAACCCTTAAAAAACCTAAA
36824467 ATCTTATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.58, C:0.29, G:0.00, T:0.13
Consensus pattern (23 bp):
AAAAACCCTTAAAAAACCTAAAC
Found at i:36831498 original size:23 final size:22
Alignment explanation
Indices: 36831472--36831515 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36831462 ATACAAAAAC
*
36831472 AAGGGAACATTGCCTCGAGACAT
1 AAGGGAA-AATGCCTCGAGACAT
*
36831495 AAGGGAAAATGTCTCGAGACA
1 AAGGGAAAATGCCTCGAGACA
36831516 AAAATCCCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.39, C:0.18, G:0.27, T:0.16
Consensus pattern (22 bp):
AAGGGAAAATGCCTCGAGACAT
Found at i:36833350 original size:51 final size:51
Alignment explanation
Indices: 36833283--36833381 Score: 146
Period size: 51 Copynumber: 1.9 Consensus size: 51
36833273 CTATTATTCA
* *
36833283 CTCAATTTCCTCTCAATTTCCT-TCCAAATTTCTCTCAAATCCCTATTTAAT
1 CTCAATTTCATCTCAATTTCCTCT-CAAATTTCTCTCAAACCCCTATTTAAT
* *
36833334 CTCAATTTGATCTCAATTTCCTCTCAAATTTCTCTTAAACCCCTATTT
1 CTCAATTTCATCTCAATTTCCTCTCAAATTTCTCTCAAACCCCTATTT
36833382 TTAAATTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.01, T:0.43
Consensus pattern (51 bp):
CTCAATTTCATCTCAATTTCCTCTCAAATTTCTCTCAAACCCCTATTTAAT
Found at i:36833368 original size:11 final size:11
Alignment explanation
Indices: 36833283--36833365 Score: 52
Period size: 11 Copynumber: 7.8 Consensus size: 11
36833273 CTATTATTCA
36833283 CTCAATTTCCT
1 CTCAATTTCCT
36833294 CTCAATTTCCT
1 CTCAATTTCCT
36833305 -TCCAAATTT-CT
1 CT-C-AATTTCCT
*
36833316 CTCAA-ATCC-
1 CTCAATTTCCT
**
36833325 CT--ATTTAAT
1 CTCAATTTCCT
**
36833334 CTCAATTTGAT
1 CTCAATTTCCT
36833345 CTCAATTTCCT
1 CTCAATTTCCT
36833356 CTCAAATTTC
1 CTC-AATTTC
36833366 TCTTAAACCC
Statistics
Matches: 56, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 5 0.09
10 4 0.07
11 33 0.59
12 12 0.21
ACGTcount: A:0.25, C:0.30, G:0.01, T:0.43
Consensus pattern (11 bp):
CTCAATTTCCT
Found at i:36836321 original size:7 final size:7
Alignment explanation
Indices: 36836284--36836313 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
36836274 TTTAATTTTT
36836284 AACCCTA
1 AACCCTA
36836291 AACCCTA
1 AACCCTA
36836298 AACCCTA
1 AACCCTA
36836305 AACCCTA
1 AACCCTA
36836312 AA
1 AA
36836314 ACCCAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (7 bp):
AACCCTA
Found at i:36843759 original size:15 final size:17
Alignment explanation
Indices: 36843739--36843775 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
36843729 ATAAATATGA
36843739 TATTTTT-ATTTCT-TT
1 TATTTTTAATTTCTGTT
*
36843754 TATTTTTAATTTTTGTT
1 TATTTTTAATTTCTGTT
36843771 TATTT
1 TATTT
36843776 ATTGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 5 0.26
17 7 0.37
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (17 bp):
TATTTTTAATTTCTGTT
Found at i:36843803 original size:30 final size:26
Alignment explanation
Indices: 36843741--36843805 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 26
36843731 AAATATGATA
*
36843741 TTTTTATTTCTTTTATTTTTAATTTT
1 TTTTTATTTATTTTATTTTTAATTTT
*
36843767 TGTTTATTTATTGTTATTTGTTTAATTTCT
1 TTTTTATTTATT-TTA-TT-TTTAATTT-T
36843797 TTTTTATTT
1 TTTTTATTT
36843806 GTAGGTTGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.31
27 3 0.09
28 2 0.06
29 8 0.25
30 9 0.28
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (26 bp):
TTTTTATTTATTTTATTTTTAATTTT
Found at i:36845521 original size:5 final size:5
Alignment explanation
Indices: 36845511--36845554 Score: 79
Period size: 5 Copynumber: 8.8 Consensus size: 5
36845501 CTACACCACC
*
36845511 CTCCT CTCCT CGCCT CTCCT CTCCT CTCCT CTCCT CTCCT CTCC
1 CTCCT CTCCT CTCCT CTCCT CTCCT CTCCT CTCCT CTCCT CTCC
36845555 ATTTTCTCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.00, C:0.61, G:0.02, T:0.36
Consensus pattern (5 bp):
CTCCT
Found at i:36866458 original size:20 final size:19
Alignment explanation
Indices: 36866433--36866474 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36866423 CCAATATAGT
*
36866433 GGTCAATGCTCTTAGTTGAA
1 GGTCAATGCTC-GAGTTGAA
*
36866453 GGTCAATGTTCGAGTTGAA
1 GGTCAATGCTCGAGTTGAA
36866472 GGT
1 GGT
36866475 GATTTTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.33
Consensus pattern (19 bp):
GGTCAATGCTCGAGTTGAA
Found at i:36874192 original size:66 final size:67
Alignment explanation
Indices: 36874104--36874236 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 67
36874094 AAGTGTGTGT
36874104 AAAGTAATGACCCAAGGCTTTCTTCATATAAGGAGAGTTTAGAGAGTTCAACTATGATTAAATTT
1 AAAGTAATGACCCAAGGCTTTCTTCATATAAGGAGAGTTTAGAGAGTTCAACTATGATTAAATTT
36874169 AA
66 AA
36874171 AAAGTAATGA-CCAAGGCTTTCTTCATATAAGGAGAGTTTAGAGAGTTCAACTATGATTAAATTT
1 AAAGTAATGACCCAAGGCTTTCTTCATATAAGGAGAGTTTAGAGAGTTCAACTATGATTAAATTT
36874235 AA
66 AA
36874237 TCACTTTAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
66 56 0.85
67 10 0.15
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (67 bp):
AAAGTAATGACCCAAGGCTTTCTTCATATAAGGAGAGTTTAGAGAGTTCAACTATGATTAAATTT
AA
Found at i:36879152 original size:13 final size:14
Alignment explanation
Indices: 36879134--36879162 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36879124 TATTCTTCTA
36879134 AAAAATAGTT-ATT
1 AAAAATAGTTAATT
36879147 AAAAATAGTTAATT
1 AAAAATAGTTAATT
36879161 AA
1 AA
36879163 TTTTAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (14 bp):
AAAAATAGTTAATT
Found at i:36879271 original size:18 final size:18
Alignment explanation
Indices: 36879237--36879271 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36879227 TTAGAGTTTA
* *
36879237 TATCTAAATTTATTTAAT
1 TATCTAAATTAAATTAAT
36879255 TATCTAAATTAAATTAA
1 TATCTAAATTAAATTAA
36879272 ACTATGATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
TATCTAAATTAAATTAAT
Found at i:36880929 original size:13 final size:14
Alignment explanation
Indices: 36880911--36880939 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36880901 TATTCTTCTA
36880911 AAAAATAGTT-ATT
1 AAAAATAGTTAATT
36880924 AAAAATAGTTAATT
1 AAAAATAGTTAATT
36880938 AA
1 AA
36880940 TTTTAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (14 bp):
AAAAATAGTTAATT
Found at i:36881048 original size:18 final size:18
Alignment explanation
Indices: 36881014--36881048 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36881004 TTAGAGTTTA
* *
36881014 TATCTAAATTTATTTAAT
1 TATCTAAATTAAATTAAT
36881032 TATCTAAATTAAATTAA
1 TATCTAAATTAAATTAA
36881049 ACTATGATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
TATCTAAATTAAATTAAT
Found at i:36885550 original size:18 final size:20
Alignment explanation
Indices: 36885513--36885557 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
36885503 AAATAAATTC
36885513 ATTCAAT-T-AAGTACTTCA
1 ATTCAATCTCAAGTACTTCA
36885531 ATT-AATCTCAAGTA-TTCA
1 ATTCAATCTCAAGTACTTCA
36885549 ATTCAATCT
1 ATTCAATCT
36885558 ATAATTCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 3 0.12
18 11 0.46
19 10 0.42
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (20 bp):
ATTCAATCTCAAGTACTTCA
Done.