Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 11 of 136
Found at i:3217448 original size:24 final size:24
Alignment explanation
Indices: 3217404--3217450 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
3217394 NNNNNNAAAC
**
3217404 TATAAAAAAATTTATTGAAAGTTG
1 TATAAAAAAATTTATAAAAAGTTG
*
3217428 TATATAAAAATTTATAAAAAGTT
1 TATAAAAAAATTTATAAAAAGTT
3217451 ATTAAAAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (24 bp):
TATAAAAAAATTTATAAAAAGTTG
Found at i:3227512 original size:2 final size:2
Alignment explanation
Indices: 3227505--3227547 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
3227495 GACCAGCTGT
3227505 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
3227547 A
1 A
3227548 TGATGGTTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:3227851 original size:2 final size:2
Alignment explanation
Indices: 3227846--3227882 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
3227836 GATATATAAA
3227846 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
3227883 ACACGAAGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:3228452 original size:22 final size:22
Alignment explanation
Indices: 3228423--3228471 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
3228413 TTTTACAATA
3228423 TGTA-AACTCTTTTCATAACAT
1 TGTATAACTCTTTTCATAACAT
3228444 TGTATAACTCTTTTCATAACAT
1 TGTATAACTCTTTTCATAACAT
3228466 TGTATA
1 TGTATA
3228472 CCATTAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (22 bp):
TGTATAACTCTTTTCATAACAT
Found at i:3232628 original size:23 final size:23
Alignment explanation
Indices: 3232602--3232654 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
3232592 ATAAGTGCCA
3232602 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
3232625 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
3232648 CACTGAT
1 CACTGAT
3232655 CAATAACACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:3234750 original size:2 final size:2
Alignment explanation
Indices: 3234709--3234733 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3234699 ATGACCAAAC
3234709 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
3234734 GACATGAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3235559 original size:75 final size:75
Alignment explanation
Indices: 3235426--3235567 Score: 175
Period size: 75 Copynumber: 1.9 Consensus size: 75
3235416 AAAGTTGCGT
* * *
3235426 CCAGCGCTAGTCGGGTAAACCGAAAAATATAATGGTGTGTCCAGTACTAGTTAGAT-AAACTAAC
1 CCAGCACTAGTCGGATAAACCGAAAAATATAATGGTGTGTCCAGCACTAGTTAGATAAAAC-AAC
3235490 AAAGGTTATGC
65 AAAGGTTATGC
* *
3235501 CCAGCACTAGTCGGATAAATC-AACAAGTATAATGGTGTG-CCTAGCACTAGTT-GAATAAAACA
1 CCAGCACTAGTCGGATAAACCGAA-AAATATAATGGTGTGTCC-AGCACTAGTTAG-ATAAAACA
3235563 ACAAA
63 ACAAA
3235568 TATTGCGCCT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
74 5 0.09
75 49 0.84
76 4 0.07
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (75 bp):
CCAGCACTAGTCGGATAAACCGAAAAATATAATGGTGTGTCCAGCACTAGTTAGATAAAACAACA
AAGGTTATGC
Found at i:3244826 original size:43 final size:43
Alignment explanation
Indices: 3244770--3244855 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
3244760 TCATATTTCA
*
3244770 TTTCTCATTTTATATTCAATTAC-CATCTTTGCCATTTCAATAT
1 TTTCTCATCTTATATTC-ATTACTCATCTTTGCCATTTCAATAT
* *
3244813 TTTCTCATCTTATATTCATTTCTCATCTTTGTCATTTCAATAT
1 TTTCTCATCTTATATTCATTACTCATCTTTGCCATTTCAATAT
3244856 CAATCACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 4 0.10
43 35 0.90
ACGTcount: A:0.23, C:0.21, G:0.02, T:0.53
Consensus pattern (43 bp):
TTTCTCATCTTATATTCATTACTCATCTTTGCCATTTCAATAT
Found at i:3244849 original size:16 final size:18
Alignment explanation
Indices: 3244813--3244850 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
3244803 ATTTCAATAT
*
3244813 TTTCTCATCTTATATTCA
1 TTTCTCATCTTATAGTCA
3244831 TTTCTCATCTT-T-GTCA
1 TTTCTCATCTTATAGTCA
3244847 TTTC
1 TTTC
3244851 AATATCAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.16, C:0.24, G:0.03, T:0.58
Consensus pattern (18 bp):
TTTCTCATCTTATAGTCA
Found at i:3245817 original size:33 final size:33
Alignment explanation
Indices: 3245775--3245843 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
3245765 ATCCCTAATA
3245775 CTTAAACTATTCAACAATGTCAACATCTAAAAT
1 CTTAAACTATTCAACAATGTCAACATCTAAAAT
3245808 CTTAAACTATTCAACAATGTCAACATCTAAAAT
1 CTTAAACTATTCAACAATGTCAACATCTAAAAT
3245841 CTT
1 CTT
3245844 GAACAATACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.43, C:0.22, G:0.03, T:0.32
Consensus pattern (33 bp):
CTTAAACTATTCAACAATGTCAACATCTAAAAT
Found at i:3248846 original size:30 final size:30
Alignment explanation
Indices: 3248810--3248872 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
3248800 AGTCGATATG
3248810 TTAGGTACATGACTTGTGTATGGCATGGCT
1 TTAGGTACATGACTTGTGTATGGCATGGCT
3248840 TTAGGTACATGACTTGTGTATGGCATGGCT
1 TTAGGTACATGACTTGTGTATGGCATGGCT
3248870 TTA
1 TTA
3248873 CTAGAAACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.38
Consensus pattern (30 bp):
TTAGGTACATGACTTGTGTATGGCATGGCT
Found at i:3253658 original size:69 final size:68
Alignment explanation
Indices: 3253582--3253709 Score: 193
Period size: 69 Copynumber: 1.9 Consensus size: 68
3253572 TGATTAAACT
* * *
3253582 TAATCACTTTAATATTAAATTAATATAATATTTATAAAGATAAATATTATATTAAATTTACTATT
1 TAATCACTTTAATATTAAATTAATAAAATA-CTATAAAGATAAATATTAAATTAAATTTACTATT
3253647 AAGA
65 AAGA
* * *
3253651 TAATCACTTTAATATTAAATTAATAAAATACTATTAAGATAAGTATTAAATTTAATTTA
1 TAATCACTTTAATATTAAATTAATAAAATACTATAAAGATAAATATTAAATTAAATTTA
3253710 ATAGAAAACT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
68 24 0.45
69 29 0.55
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATACTATAAAGATAAATATTAAATTAAATTTACTATTA
AGA
Found at i:3253721 original size:37 final size:37
Alignment explanation
Indices: 3253640--3253734 Score: 113
Period size: 37 Copynumber: 2.5 Consensus size: 37
3253630 ATATTAAATT
*
3253640 TACTATTAAGATAATCACTTTAATATTAAATTAATAAAA
1 TACTATTAAGATAAT-A-TTAAATATTAAATTAATAAAA
*
3253679 TACTATTAAGATAAGTATTAAAT-TTAATTTAATAGAAA
1 TACTATTAAGATAA-TATTAAATATTAAATTAATA-AAA
*
3253717 -ACTATTAAAATAATATTA
1 TACTATTAAGATAATATTA
3253735 TTTTTGGAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
36 5 0.10
37 22 0.43
38 8 0.16
39 15 0.29
40 1 0.02
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (37 bp):
TACTATTAAGATAATATTAAATATTAAATTAATAAAA
Found at i:3262089 original size:17 final size:18
Alignment explanation
Indices: 3262067--3262106 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
3262057 ATGAAGTTTA
3262067 TATAAGATATTA-ATTAT
1 TATAAGATATTATATTAT
*
3262084 TATAAGATATTATCTTAT
1 TATAAGATATTATATTAT
3262102 TATAA
1 TATAA
3262107 AATAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (18 bp):
TATAAGATATTATATTAT
Found at i:3272931 original size:13 final size:13
Alignment explanation
Indices: 3272913--3272937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3272903 TTAATAAACT
3272913 ACACTTTTCTACA
1 ACACTTTTCTACA
3272926 ACACTTTTCTAC
1 ACACTTTTCTAC
3272938 CACTCTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.00, T:0.40
Consensus pattern (13 bp):
ACACTTTTCTACA
Found at i:3276816 original size:5 final size:5
Alignment explanation
Indices: 3276806--3276836 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
3276796 GAAAGTCTAA
3276806 GATAT GATAT GATAT GATAT GATAT GATAT G
1 GATAT GATAT GATAT GATAT GATAT GATAT G
3276837 CCTAATGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.39
Consensus pattern (5 bp):
GATAT
Found at i:3279196 original size:176 final size:179
Alignment explanation
Indices: 3278890--3279242 Score: 534
Period size: 176 Copynumber: 2.0 Consensus size: 179
3278880 CTCTTGCCCC
* * * *
3278890 TTTGTTGATTACCAATCAAATAAGCAATTAGTAGAAGTTTTCATCAACATTATTGAACTTTATAT
1 TTTGTTGATTACCAATCAAATAAGCAATTAGTAGAAGTGTTCATCAAAATTATCGAAATTTATAT
* *
3278955 TGAGATGGAGGGGCATTGAAAATGGCCTATGTCTTAATGGAATATCACATCTGTTAGTAACTTTG
66 CGAGATGGAGGGGCATTGAAAATGGCCTA-GTCTTAATGGAATATCACATCAGTTAGTAACTTTG
3279020 CCACAAATTAAAATTAATCTCATAAATAAGGCGCAACCTATAATTCACCA
130 CCACAAATTAAAATTAATCTCATAAATAAGGCGCAACCTATAATTCACCA
* *
3279070 TTTGTTGATTACCAATTAAATAAGCAATTAGT-GGAG-GTTCATCAAAATTATCGAAATTTATAT
1 TTTGTTGATTACCAATCAAATAAGCAATTAGTAGAAGTGTTCATCAAAATTATCGAAATTTATAT
* * *
3279133 CGAGTTGGAGGGGTATTGAAAAATGG-CTA-TCTTAATGGAATATCACTTCAGTTAGTAACTTTG
66 CGAGATGGAGGGGCATTG-AAAATGGCCTAGTCTTAATGGAATATCACATCAGTTAGTAACTTTG
* * *
3279196 CCACAGATTAAAATTGATCTCATAAATAAGGTGCAACCTATAATTCA
130 CCACAAATTAAAATTAATCTCATAAATAAGGCGCAACCTATAATTCA
3279243 TCATAACAAT
Statistics
Matches: 158, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
176 76 0.48
178 41 0.26
179 10 0.06
180 31 0.20
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (179 bp):
TTTGTTGATTACCAATCAAATAAGCAATTAGTAGAAGTGTTCATCAAAATTATCGAAATTTATAT
CGAGATGGAGGGGCATTGAAAATGGCCTAGTCTTAATGGAATATCACATCAGTTAGTAACTTTGC
CACAAATTAAAATTAATCTCATAAATAAGGCGCAACCTATAATTCACCA
Found at i:3283497 original size:46 final size:46
Alignment explanation
Indices: 3283430--3283525 Score: 147
Period size: 46 Copynumber: 2.1 Consensus size: 46
3283420 GGGTCTTGGC
*
3283430 TTTATTGAGCAGGGGATTGCATAAGTTCTTTGAGCTGAATCAACAT
1 TTTATTGAGCAGGGGATTGCATAAATTCTTTGAGCTGAATCAACAT
* * * *
3283476 TTTATTGTGTAGGGGTTTGCATAAATTCTTTGAGCTTAATCAACAT
1 TTTATTGAGCAGGGGATTGCATAAATTCTTTGAGCTGAATCAACAT
3283522 TTTA
1 TTTA
3283526 ACCTAGCTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (46 bp):
TTTATTGAGCAGGGGATTGCATAAATTCTTTGAGCTGAATCAACAT
Found at i:3286800 original size:31 final size:31
Alignment explanation
Indices: 3286752--3286811 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
3286742 TTTTGAGTTA
* * *
3286752 AATTTGACCCTCTACCTTTTAGAAAAGGTCG
1 AATTTGACCATCTACCTTTCAAAAAAGGTCG
3286783 AATTTGACCAT-TAACCTTTCAAAAAAGGT
1 AATTTGACCATCT-ACCTTTCAAAAAAGGT
3286812 TAAATTGTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (31 bp):
AATTTGACCATCTACCTTTCAAAAAAGGTCG
Found at i:3286937 original size:20 final size:20
Alignment explanation
Indices: 3286914--3286957 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
3286904 TCTTTTTGAA
*
3286914 TTTTTATGAACTTTT-TATAT
1 TTTTTATGAA-TTTTAAATAT
*
3286934 TTTTTTTGAATTTTAAATAT
1 TTTTTATGAATTTTAAATAT
3286954 TTTT
1 TTTT
3286958 GTTTTAATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTATGAATTTTAAATAT
Found at i:3301275 original size:13 final size:13
Alignment explanation
Indices: 3301259--3301333 Score: 86
Period size: 13 Copynumber: 6.1 Consensus size: 13
3301249 TTTAAATCAA
*
3301259 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
*
3301272 ACTTTTGAAAAGC
1 ACTTTTCAAAAGC
3301285 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
3301298 ACTTTTC--AA--
1 ACTTTTCAAAAGC
3301307 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
3301320 ACTTCTGAAAAGC
1 ACTTTTCAAAAGC
3301333 A
1 A
3301334 TTGCCAAATT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
9 7 0.13
11 4 0.08
13 42 0.79
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:3301277 original size:26 final size:26
Alignment explanation
Indices: 3301248--3301323 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 26
3301238 AACACTCAAA
*
3301248 TTTTAAATCAAACTTTTCAAAAACAC
1 TTTTAAATCAAACTTTTCAAAAGCAC
*
3301274 TTTTGAAA--AGCACTTTTCAAAAGCAC
1 TTTT-AAATCA-AACTTTTCAAAAGCAC
3301300 -TTT---TCAAACTTTTCAAAAGCAC
1 TTTTAAATCAAACTTTTCAAAAGCAC
3301322 TT
1 TT
3301324 CTGAAAAGCA
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
22 15 0.36
23 2 0.05
25 4 0.10
26 18 0.43
27 3 0.07
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (26 bp):
TTTTAAATCAAACTTTTCAAAAGCAC
Found at i:3306233 original size:12 final size:12
Alignment explanation
Indices: 3306218--3306243 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
3306208 ATAGCATCTG
3306218 GACCAGGAATTT
1 GACCAGGAATTT
3306230 GACCAGGAATTT
1 GACCAGGAATTT
3306242 GA
1 GA
3306244 GGTTAGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (12 bp):
GACCAGGAATTT
Found at i:3312031 original size:272 final size:272
Alignment explanation
Indices: 3311561--3312235 Score: 1118
Period size: 272 Copynumber: 2.5 Consensus size: 272
3311551 ATCGAGTCTG
* * *
3311561 TAGCTTTCTAGGAAATTTCTTAATGAACCAGAAGAACTGTAACATCAATCAATACAACATAAATT
1 TAGCTTTTTAGGAAATTTCTTAATGAACC--AA-AA--GAAACATCAATCAATACAACAT--TTT
** * * *
3311626 ACTTCTTTTAGGAGTGAGGGGGATTTATACCTGCTACTAAATAGTAAAGAATCCATGTAAAACAA
59 TTTTCTCTCATG-G-GAGGGGGATTTATACCTGCTACTAAATAGTAAAGAATCCATGTAAAACAA
* *
3311691 TTAAATAAGTGAAGCCACTTGGAAAATAAAATGTGAACATGTATGCAAAAGCATATGATGATAGA
122 TTAAAAAAGTGAAGCCACTTGGAAAATAAAATGTGAACATGTATGCAAAAGCATATAATGATAGA
* *
3311756 GGAGTTCGTTTTCCAGTCATCATAATAGAGACCACATAGATAATGCATTTCCTTCAAGCCTAAGA
187 GGAGTTCGTTTTCCAGTCATCATAATAGAGACCACAGAGACAATGCATTTCCTTCAAGCCTAAGA
3311821 GAAACCATTGAAAGTCATTGA
252 GAAACCATTGAAAGTCATTGA
3311842 TAGCTTTTTAGGAAATTTCTTAATGAACCAAAAGAAACATCAATCAATACAACATTTTTTTTCTC
1 TAGCTTTTTAGGAAATTTCTTAATGAACCAAAAGAAACATCAATCAATACAACATTTTTTTTCTC
3311907 TCATGGGAGGGGGATTTATACCTGCTACTAAATAGTAAAGAATCCATGTAAAACAATTAAAAAAG
66 TCATGGGAGGGGGATTTATACCTGCTACTAAATAGTAAAGAATCCATGTAAAACAATTAAAAAAG
*
3311972 TGAAGCCACTTGGAAAATAAAATGTGAACATGTATGCAAAAGCATATAATGATAGAGGAGTTTGT
131 TGAAGCCACTTGGAAAATAAAATGTGAACATGTATGCAAAAGCATATAATGATAGAGGAGTTCGT
*
3312037 TTTCCAGTCATCATAATAGAGACCACAGAGACAATGCATTTCCTTTAAGCCTAAGAGAAACCATT
196 TTTCCAGTCATCATAATAGAGACCACAGAGACAATGCATTTCCTTCAAGCCTAAGAGAAACCATT
3312102 GAAAGTCATTGA
261 GAAAGTCATTGA
*
3312114 TAGCTTTTTAGGAAATTTCTTATTGAACCAAAAGAAACATCAATCAATACAACATTTTTTTTCTC
1 TAGCTTTTTAGGAAATTTCTTAATGAACCAAAAGAAACATCAATCAATACAACATTTTTTTTCTC
*
3312179 TCATGGGAGGGGGATTTATACCTGCTACTAAATAGTAAAGAATCCGTGTAAAA-AATT
66 TCATGGGAGGGGGATTTATACCTGCTACTAAATAGTAAAGAATCCATGTAAAACAATT
3312236 TAAATGAATG
Statistics
Matches: 378, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
271 4 0.01
272 311 0.82
273 1 0.00
274 9 0.02
276 21 0.06
278 2 0.01
279 2 0.01
281 28 0.07
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.29
Consensus pattern (272 bp):
TAGCTTTTTAGGAAATTTCTTAATGAACCAAAAGAAACATCAATCAATACAACATTTTTTTTCTC
TCATGGGAGGGGGATTTATACCTGCTACTAAATAGTAAAGAATCCATGTAAAACAATTAAAAAAG
TGAAGCCACTTGGAAAATAAAATGTGAACATGTATGCAAAAGCATATAATGATAGAGGAGTTCGT
TTTCCAGTCATCATAATAGAGACCACAGAGACAATGCATTTCCTTCAAGCCTAAGAGAAACCATT
GAAAGTCATTGA
Found at i:3314344 original size:6 final size:6
Alignment explanation
Indices: 3314333--3314359 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
3314323 GATCCTCTCT
3314333 CCATGC CCATGC CCATGC CCATGC CCA
1 CCATGC CCATGC CCATGC CCATGC CCA
3314360 CATATGTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.52, G:0.15, T:0.15
Consensus pattern (6 bp):
CCATGC
Found at i:3316263 original size:19 final size:19
Alignment explanation
Indices: 3316228--3316266 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
3316218 AATAAGAACG
*
3316228 AAATAAAAATCTAAGAATA
1 AAATAAAAACCTAAGAATA
*
3316247 AAATAAAAACCTGAGAATA
1 AAATAAAAACCTAAGAATA
3316266 A
1 A
3316267 TTTCTTTCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.67, C:0.08, G:0.08, T:0.18
Consensus pattern (19 bp):
AAATAAAAACCTAAGAATA
Found at i:3318785 original size:13 final size:13
Alignment explanation
Indices: 3318767--3318807 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
3318757 AGTAAATTAG
3318767 AATGGTTATATGA
1 AATGGTTATATGA
3318780 AATGGTT-TATGGA
1 AATGGTTATAT-GA
*
3318793 AATGGATATATGA
1 AATGGTTATATGA
3318806 AA
1 AA
3318808 GGAGACATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 3 0.12
13 19 0.76
14 3 0.12
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.34
Consensus pattern (13 bp):
AATGGTTATATGA
Found at i:3324498 original size:44 final size:44
Alignment explanation
Indices: 3324445--3324533 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
3324435 ATTCTGGGTA
* *
3324445 TAATCAAATTGCTATTGCACTAGAGGATCAGGAGAAAAAAACTT
1 TAATAAAATTGCTATTGCACCAGAGGATCAGGAGAAAAAAACTT
*
3324489 TAATAAAATTGCTATTGCACCAGAGGATCGGGAGAAAAAAACTT
1 TAATAAAATTGCTATTGCACCAGAGGATCAGGAGAAAAAAACTT
3324533 T
1 T
3324534 CACTTGTCCC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (44 bp):
TAATAAAATTGCTATTGCACCAGAGGATCAGGAGAAAAAAACTT
Found at i:3328609 original size:21 final size:21
Alignment explanation
Indices: 3328574--3328627 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
3328564 ACTATTGTTG
3328574 AGAAGAA-AA-TTGTTGCT-A
1 AGAAGAAGAAGTTGTTGCTGA
* *
3328592 TAGAAGAGGAAGTTGTTGTTGA
1 -AGAAGAAGAAGTTGTTGCTGA
3328614 AGAAGAAGAAGTTG
1 AGAAGAAGAAGTTG
3328628 CTAAAAATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 6 0.21
20 2 0.07
21 20 0.69
22 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.31, T:0.26
Consensus pattern (21 bp):
AGAAGAAGAAGTTGTTGCTGA
Found at i:3341945 original size:205 final size:205
Alignment explanation
Indices: 3341587--3342002 Score: 751
Period size: 205 Copynumber: 2.0 Consensus size: 205
3341577 TATTGCTTCC
*
3341587 ATTTTTATCTAATTAAATCAGCCCAAAATATGAAATATTAAGTCTCCAAGATTGATCCCTATTGT
1 ATTTTTATCTAATTAAATCAGCCCAAAATATGAAATATTAAGTCTCCAAGATTGATCCCTATTAT
* *
3341652 TTCCAAGAAGTGCCATTGTCGCTCATAGCATCTAGCTTGTGTAAGATCTTTCTCTCTCTTGTTTT
66 TTCCAAGAAGTGCCATTGTCGCCCATAGAATCTAGCTTGTGTAAGATCTTTCTCTCTCTTGTTTT
* * * *
3341717 CTTGCTAAATCTTGATCAATAAAAACCTAAATTTCTAGATTTGAAATTTTGGGGATTTTTAAAGA
131 CTTGCTAAATCTTGATAAATAAAAACCTAAATTTCAAGATCTGAAATTTTGGAGATTTTTAAAGA
3341782 TTTAATGGAT
196 TTTAATGGAT
*
3341792 ATTTTTATCTAATTAAATCAGCCCCAAATATGAAATATTAAGTCTCCAAGATTGATCCCTATTAT
1 ATTTTTATCTAATTAAATCAGCCCAAAATATGAAATATTAAGTCTCCAAGATTGATCCCTATTAT
3341857 TTCCAAGAAGTGCCATTGTCGCCCATAGAATCTAGCTTGTGTAAGATCTTTCTCTCTCTTGTTTT
66 TTCCAAGAAGTGCCATTGTCGCCCATAGAATCTAGCTTGTGTAAGATCTTTCTCTCTCTTGTTTT
*
3341922 CTTGCTAAATCTTGATAAATAAAAACCTAAATTTCAAGATCTGAAATTTTGGAGTTTTTTAAAGA
131 CTTGCTAAATCTTGATAAATAAAAACCTAAATTTCAAGATCTGAAATTTTGGAGATTTTTAAAGA
3341987 TTTAATGGAT
196 TTTAATGGAT
3341997 ATTTTT
1 ATTTTT
3342003 CAGCTTTTTA
Statistics
Matches: 202, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
205 202 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (205 bp):
ATTTTTATCTAATTAAATCAGCCCAAAATATGAAATATTAAGTCTCCAAGATTGATCCCTATTAT
TTCCAAGAAGTGCCATTGTCGCCCATAGAATCTAGCTTGTGTAAGATCTTTCTCTCTCTTGTTTT
CTTGCTAAATCTTGATAAATAAAAACCTAAATTTCAAGATCTGAAATTTTGGAGATTTTTAAAGA
TTTAATGGAT
Found at i:3343697 original size:23 final size:21
Alignment explanation
Indices: 3343658--3343699 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
3343648 CACCATTATG
*
3343658 ATTTTATTTATTTAGTTTTCT
1 ATTTTATTTATTCAGTTTTCT
3343679 ATTTTATTATTATTCAGTTTT
1 ATTTTA-T-TTATTCAGTTTT
3343700 TGGATTGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (21 bp):
ATTTTATTTATTCAGTTTTCT
Found at i:3345053 original size:27 final size:27
Alignment explanation
Indices: 3345008--3345154 Score: 134
Period size: 27 Copynumber: 5.4 Consensus size: 27
3344998 ATTTGTCATT
* * *
3345008 AAGGCTATTC-TCTCGGAGTTTTCCAAA
1 AAGGCTATTCTTCT-AGAGTTTGCCACA
* *
3345035 AAGGCTATTCTTCTAGAGTTCGCTACA
1 AAGGCTATTCTTCTAGAGTTTGCCACA
* * * *
3345062 AAGGATATTCTTCCAGAGTTTTCTACA
1 AAGGCTATTCTTCTAGAGTTTGCCACA
* * *
3345089 AAGACTATTCTTTTAGAGTTTGCCATA
1 AAGGCTATTCTTCTAGAGTTTGCCACA
* * **
3345116 AAGGCTATTCTTTTAGGGTTCACCACA
1 AAGGCTATTCTTCTAGAGTTTGCCACA
3345143 AAGGCTATTCTT
1 AAGGCTATTCTT
3345155 TCTTGATGTG
Statistics
Matches: 98, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
27 95 0.97
28 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
AAGGCTATTCTTCTAGAGTTTGCCACA
Found at i:3349577 original size:25 final size:25
Alignment explanation
Indices: 3349474--3349596 Score: 119
Period size: 25 Copynumber: 5.0 Consensus size: 25
3349464 GTACATGTAT
3349474 GCTCATACGAGTTGTAA-A-CGGTAA
1 GCTCATACGAGTTG-AATATCGGTAA
* *
3349498 GCTCCTCCGAGTTGAATAAT-GGTAA
1 GCTCATACGAGTTGAAT-ATCGGTAA
* * * *
3349523 GCTCCTTCGAGCTGAATAACGGTAA
1 GCTCATACGAGTTGAATATCGGTAA
*
3349548 GCTCATATGAGTTGAATATCGGTAA
1 GCTCATACGAGTTGAATATCGGTAA
* *
3349573 GCTCATAAGAGCTGAA-ATCGGTAA
1 GCTCATACGAGTTGAATATCGGTAA
3349597 CCCTAATGAC
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
23 2 0.02
24 21 0.25
25 60 0.72
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (25 bp):
GCTCATACGAGTTGAATATCGGTAA
Found at i:3349585 original size:50 final size:49
Alignment explanation
Indices: 3349474--3349596 Score: 131
Period size: 50 Copynumber: 2.5 Consensus size: 49
3349464 GTACATGTAT
* * * * *
3349474 GCTCATACGAGTTGTAAACGGTAAGCTCCTCCGAGTTGAATAATGGTAA
1 GCTCATAAGAGCTGAAAACGGTAAGCTCATACGAGTTGAATAATGGTAA
* ** *
3349523 GCTCCTTCGAGCTGAATAACGGTAAGCTCATATGAGTTGAAT-ATCGGTAA
1 GCTCATAAGAGCTGAA-AACGGTAAGCTCATACGAGTTGAATAAT-GGTAA
*
3349573 GCTCATAAGAGCTGAAATCGGTAA
1 GCTCATAAGAGCTGAAAACGGTAA
3349597 CCCTAATGAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
49 21 0.34
50 40 0.66
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (49 bp):
GCTCATAAGAGCTGAAAACGGTAAGCTCATACGAGTTGAATAATGGTAA
Found at i:3350434 original size:22 final size:22
Alignment explanation
Indices: 3350411--3350451 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
3350401 ATAGTGTTAT
* *
3350411 TTTA-TTACTTTTAATTTATCA
1 TTTATTTACTATTAACTTATCA
3350432 TTTATTTACTATTAACTTAT
1 TTTATTTACTATTAACTTAT
3350452 TAACCTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTATTTACTATTAACTTATCA
Found at i:3357323 original size:21 final size:21
Alignment explanation
Indices: 3357293--3357333 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3357283 ACTTTTTGGC
*
3357293 AAATCGCACACGCCCGTGTAG
1 AAATCCCACACGCCCGTGTAG
*
3357314 AAATCCCACATGCCCGTGTA
1 AAATCCCACACGCCCGTGTA
3357334 TGATAGCCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.34, G:0.20, T:0.17
Consensus pattern (21 bp):
AAATCCCACACGCCCGTGTAG
Found at i:3359921 original size:5 final size:5
Alignment explanation
Indices: 3359911--3359953 Score: 50
Period size: 5 Copynumber: 8.2 Consensus size: 5
3359901 CTTATTTTAC
* *
3359911 AATTA AATTA AATTA AATTA ATATTTA AATTA ACTCA AATTA A
1 AATTA AATTA AATTA AATTA A-A-TTA AATTA AATTA AATTA A
3359954 CCTCCAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 26 0.81
6 2 0.06
7 4 0.12
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTA
Found at i:3364840 original size:124 final size:124
Alignment explanation
Indices: 3364620--3364864 Score: 454
Period size: 124 Copynumber: 2.0 Consensus size: 124
3364610 TCTATCAAGC
*
3364620 AAAGCCTTAATGATTGAGAATAATCAAATTGATTGATGGTACATTGAATTATACACTTCAAATTT
1 AAAGCCTTAATGATTGAGAATAATCAAATTGATTGATGGTACATAGAATTATACACTTCAAATTT
*
3364685 CCATCCTATAAAAAATATTAATGCATAAAATATTAGTCTCAATGTTTTTTAAACCGTAT
66 CCATCCTATAAAAAATATTAATGCATAAAATATTAATCTCAATGTTTTTTAAACCGTAT
3364744 AAAGCCTTAATGATTGAGAATAATCAAATTGATTGATGGTACATAGAATTATACACTTCAAATTT
1 AAAGCCTTAATGATTGAGAATAATCAAATTGATTGATGGTACATAGAATTATACACTTCAAATTT
* *
3364809 CCATCCTATATAAAATATTAATGCATAAAATATTAATCTTAATGTTTTTTAAACCG
66 CCATCCTATAAAAAATATTAATGCATAAAATATTAATCTCAATGTTTTTTAAACCG
3364865 GATTGGTGGT
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 117 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (124 bp):
AAAGCCTTAATGATTGAGAATAATCAAATTGATTGATGGTACATAGAATTATACACTTCAAATTT
CCATCCTATAAAAAATATTAATGCATAAAATATTAATCTCAATGTTTTTTAAACCGTAT
Found at i:3365256 original size:2 final size:2
Alignment explanation
Indices: 3365249--3365290 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
3365239 ACCAAACACG
*
3365249 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
3365291 CCATAATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:3372654 original size:14 final size:14
Alignment explanation
Indices: 3372635--3372674 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
3372625 TTGATTGGCA
3372635 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
3372649 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
3372663 GGAAAATGTTTT
1 GTAAAATGTTTT
3372675 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:3372687 original size:34 final size:35
Alignment explanation
Indices: 3372643--3372709 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
3372633 CAGTAAAATG
* *
3372643 TTTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
*
3372677 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTT
3372710 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
Found at i:3372696 original size:20 final size:20
Alignment explanation
Indices: 3372658--3372697 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
3372648 CGTAAAATGA
**
3372658 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
3372678 TTTCTGTAAAATGACTTACT
1 TTTCTGGAAAATGACTTACT
3372698 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:3372774 original size:32 final size:32
Alignment explanation
Indices: 3372699--3372775 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 32
3372689 TGACTTACTG
* ** *
3372699 GAAAATATTTTCTGGTGTTTGATTGAATTTGT
1 GAAAATATTTTCTGCTGTTTGACAGAATTTCT
3372731 GTAAAATATTTTCTGCTGTTTGACAG-ATTTCCT
1 G-AAAATATTTTCTGCTGTTTGACAGAATTT-CT
3372764 GAAAATATTTTC
1 GAAAATATTTTC
3372776 CGAAAAAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
32 16 0.41
33 23 0.59
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (32 bp):
GAAAATATTTTCTGCTGTTTGACAGAATTTCT
Found at i:3377725 original size:8 final size:8
Alignment explanation
Indices: 3377712--3377736 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
3377702 CCATTACCAG
3377712 GAACAACA
1 GAACAACA
3377720 GAACAACA
1 GAACAACA
3377728 GAACAACA
1 GAACAACA
3377736 G
1 G
3377737 GAACGGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.24, G:0.16, T:0.00
Consensus pattern (8 bp):
GAACAACA
Found at i:3378356 original size:24 final size:24
Alignment explanation
Indices: 3378329--3378401 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
3378319 TGCAATCGAT
*
3378329 AGGGTGAATAGAGGAGCTGTGGAA
1 AGGGTGAAGAGAGGAGCTGTGGAA
* *
3378353 AGGGTGAAGAGAGGAACAGTGGAA
1 AGGGTGAAGAGAGGAGCTGTGGAA
3378377 AGGGTGAAGAGAGGAGCTGTGGAA
1 AGGGTGAAGAGAGGAGCTGTGGAA
3378401 A
1 A
3378402 ATGTCTTACC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.37, C:0.04, G:0.47, T:0.12
Consensus pattern (24 bp):
AGGGTGAAGAGAGGAGCTGTGGAA
Found at i:3387673 original size:9 final size:9
Alignment explanation
Indices: 3387659--3387686 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
3387649 TTTTGTTACA
3387659 ACAATTAAT
1 ACAATTAAT
3387668 ACAATTAAT
1 ACAATTAAT
3387677 ACAATTAAT
1 ACAATTAAT
3387686 A
1 A
3387687 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:3387708 original size:68 final size:66
Alignment explanation
Indices: 3387629--3387770 Score: 248
Period size: 68 Copynumber: 2.1 Consensus size: 66
3387619 TCAAGTTTGT
*
3387629 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
3387694 AAA
64 AAA
3387697 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
*
3387762 T
66 A
3387763 TTTACTAA
1 TTTACTAA
3387771 CAATTAATTT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
66 27 0.38
67 1 0.01
68 44 0.61
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
A
Found at i:3387780 original size:16 final size:16
Alignment explanation
Indices: 3387759--3387800 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
3387749 AATAATTTGA
*
3387759 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
3387775 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
3387791 TAGTTTTAAT
1 TAATTTTAAT
3387801 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:3387784 original size:22 final size:23
Alignment explanation
Indices: 3387774--3387835 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
3387764 TTACTAACAA
* * *
3387774 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
3387796 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
*
3387819 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
3387836 CGGGCCGAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:3387789 original size:59 final size:66
Alignment explanation
Indices: 3387629--3387792 Score: 216
Period size: 68 Copynumber: 2.5 Consensus size: 66
3387619 TCAAGTTTGT
*
3387629 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTT-ATACAACAATTAATACAATTAATACAATTAATAATTTGAT
3387694 AAA
64 AAA
3387697 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
3387760 AAT
64 AAA
*
3387763 TTTACTAA-C-AA-TTA-ATTTTA-ATAACAATTA
1 TTTACTAATCAAAGTTAGATTTTATACAACAATTA
3387793 GTTTTAATTT
Statistics
Matches: 92, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
59 9 0.10
61 6 0.07
62 3 0.03
64 2 0.02
65 1 0.01
66 27 0.29
67 1 0.01
68 43 0.47
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAAGTTAGATTTTATACAACAATTAATACAATTAATACAATTAATAATTTGATAA
A
Found at i:3391407 original size:15 final size:15
Alignment explanation
Indices: 3391379--3391417 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
3391369 TTTGACATCA
3391379 AACTT-ATC-AATTC
1 AACTTAATCAAATTC
3391392 AACTTAATCAAATTC
1 AACTTAATCAAATTC
*
3391407 AACCTAATCAA
1 AACTTAATCAA
3391418 TCATACCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 5 0.22
14 3 0.13
15 15 0.65
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (15 bp):
AACTTAATCAAATTC
Found at i:3393251 original size:20 final size:19
Alignment explanation
Indices: 3393215--3393258 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
3393205 AGTTTAATAA
*
3393215 TTAATAAACTTTAATTAAC
1 TTAATAAACCTTAATTAAC
*
3393234 TTAATCAAACCTTGATTAAC
1 TTAAT-AAACCTTAATTAAC
3393254 TTAAT
1 TTAAT
3393259 TAATCAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (19 bp):
TTAATAAACCTTAATTAAC
Found at i:3405755 original size:45 final size:46
Alignment explanation
Indices: 3405665--3405762 Score: 135
Period size: 49 Copynumber: 2.1 Consensus size: 46
3405655 AAAAAACATA
* * *
3405665 AAAATTTGTATAAATTATTAGAAATTAATTAAAAATCATAAAATTTTAT
1 AAAATTTATAAAAAGTATTAGAAATTAATT---AATCATAAAATTTTAT
3405714 AAAATTTATAAAAAGTATTAGAAATTAATT-ATCATAAAATTTTAT
1 AAAATTTATAAAAAGTATTAGAAATTAATTAATCATAAAATTTTAT
3405759 AAAA
1 AAAA
3405763 GTAAGGGTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
45 19 0.41
49 27 0.59
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (46 bp):
AAAATTTATAAAAAGTATTAGAAATTAATTAATCATAAAATTTTAT
Found at i:3406402 original size:11 final size:11
Alignment explanation
Indices: 3406386--3406411 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
3406376 TATTTTTTAA
3406386 TTTTAAAATAC
1 TTTTAAAATAC
3406397 TTTTAAAATAC
1 TTTTAAAATAC
3406408 TTTT
1 TTTT
3406412 TTTTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:3421667 original size:210 final size:209
Alignment explanation
Indices: 3421041--3421710 Score: 862
Period size: 210 Copynumber: 3.2 Consensus size: 209
3421031 TGAAAACTCG
* * * *
3421041 CCAATTCCTTGTAGCTATCAATTGACAAATTTTGAAGAGAGGAAAATCCTTCAAAATCTGGAATC
1 CCAATTCATTGCAGCTATCAATTGACAAGTTTTGAAGAGAGGAAAATCCTTCCAAATCTGGAATC
* * * * *
3421106 CAACTTAAATTAGAACAAAGATATAGATCTAATTCTTTAAGATAAGTGGAGGTAGATAATCTACC
66 AAACTTAAATTAGAACAAAGATATAGA-CTAATTCTTTAAGACAAGCGGAGGTAGATAATCCATC
* **
3421171 TCCGATCTTGCTTATATTTTTACAACTGGAAATTCTAAGCTTTTCAAGAGATGAACATCTTCTTG
130 TCCGATCTTGCTTATATTTTTACAACTGGAAATTCTAAGCTTTTCAAGAGATAAACATCTTCCAG
*
3421236 TTATGGGAAGAACTT
195 TTATCGGAAGAACTT
* *
3421251 CCAATTCGTTGTAGCTATCAATTGAC-AGATTTTGAAGAGAGGAAAATCCTTCCAAATCTGGAAT
1 CCAATTCATTGCAGCTATCAATTGACAAG-TTTTGAAGAGAGGAAAATCCTTCCAAATCTGGAAT
* * *
3421315 CAAACTTAAATTAGAACAAAGATATATA-TAATTCTTTGAGACAAGGGGAGGTAGATAATCCATC
65 CAAACTTAAATTAGAACAAAGATATAGACTAATTCTTTAAGACAAGCGGAGGTAGATAATCCATC
* * *
3421379 TCCGATCTTGGTTATATTTTTACAACTGGAAATTTTAAGCTTTTCAATAGATAAACATCTTCCAG
130 TCCGATCTTGCTTATATTTTTACAACTGGAAATTCTAAGCTTTTCAAGAGATAAACATCTTCCAG
*
3421444 TTATTGGAAGAACTT
195 TTATCGGAAGAACTT
* * * *
3421459 CCAATTCATTGCACCTATTAATTGACAAGCTTTGAAGAGA-GAAAATTCCTTCCAAATTTGGAAT
1 CCAATTCATTGCAGCTATCAATTGACAAGTTTTGAAGAGAGGAAAA-TCCTTCCAAATCTGGAAT
* * ** *
3421523 CGAACTTAAATTAGGACAATTATATAGACCTAATTCTTTAAGACAAGCGCAGGTAGATAATCCAT
65 CAAACTTAAATTAGAACAAAGATATAGA-CTAATTCTTTAAGACAAGCGGAGGTAGATAATCCAT
* * *** * *
3421588 CTCCAATCTTGCTTA-ATTTTTTGCAACCAAAAATGCTAAGCTTTTCAAGAGATAAACACCTTCC
129 CTCCGATCTTGCTTATA-TTTTTACAACTGGAAATTCTAAGCTTTTCAAGAGATAAACATCTTCC
* * *
3421652 AGGTAACGAAAGAACTT
193 AGTTATCGGAAGAACTT
* * * *
3421669 CTAACTCATTGCAACTATCAATTGACAGGTTTTGAAGAGAGG
1 CCAATTCATTGCAGCTATCAATTGACAAGTTTTGAAGAGAGG
3421711 GGGTAAATAA
Statistics
Matches: 402, Mismatches: 51, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
207 5 0.01
208 176 0.44
209 4 0.01
210 216 0.54
211 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (209 bp):
CCAATTCATTGCAGCTATCAATTGACAAGTTTTGAAGAGAGGAAAATCCTTCCAAATCTGGAATC
AAACTTAAATTAGAACAAAGATATAGACTAATTCTTTAAGACAAGCGGAGGTAGATAATCCATCT
CCGATCTTGCTTATATTTTTACAACTGGAAATTCTAAGCTTTTCAAGAGATAAACATCTTCCAGT
TATCGGAAGAACTT
Found at i:3421977 original size:348 final size:348
Alignment explanation
Indices: 3421364--3422058 Score: 819
Period size: 348 Copynumber: 2.0 Consensus size: 348
3421354 GACAAGGGGA
* * * * * * *
3421364 GGTAGATAATCCATCTCCGATCTTGGTTATATTTTTACAACTGGAAATTTTAAGCTTTTCAATAG
1 GGTAAATAATCCATCTCCAATCTTGGTTATATTTTTACAACCGAAAATGTTAAGCTTTTAAAGAG
* * *
3421429 ATAAACATCTTCCAGTTATTGGAAGAACTTCCAATTCATTGCACCTATTAATTGACAAGCTTTGA
66 ATAAACATCTTCCAGTTACTGGAAGAACTTCCAATTCATTACACCTATTAATTGACAAGATTTGA
* * * * * *
3421494 AGAGAGAAAATTCCTTCCAAATTTGGAATCGAACTTAAATTAGGACAATTATATAGACCTAATTC
131 AGAGAGAAAATTCCTTCCAAATCTGGAACCGAACTTAAATTAGAACAATGACATAGACATAATTC
* * ** ** *
3421559 TTTAAGACAAGCGCAGGTAGATAATCCATCTCCAATCTTGCTTAATTTTTTGCAACCAAAAATGC
196 TTTAAGACAAGCGCAGCTAAATAATCCATCTCCAATCTTGCTTAAACTTTCACAACCAAAAATAC
*
3421624 TAAGCTTTTCAAGAGATAAAC-ACCTTCCAGG-TA-ACGAAAGAACTTCTAACTCATTGCAACTA
261 TAAGCTTTTCAAGAGATAAACAACC-TCC-GGTTATA-GAAAGAACTTCCAACTCATTGCAACTA
*
3421686 TCAATTGACAGGTTTTGAAGAGAGGG
323 TCAATTGACAGATTTTGAAGAGAGGG
* * *
3421712 GGTAAATAATCCGTCTCCAATCTTGTTTA-ATTTTTCGCAACCGAAAATGTTAAGCTTTTAAAGA
1 GGTAAATAATCCATCTCCAATCTTGGTTATATTTTT-ACAACCGAAAATGTTAAGCTTTTAAAGA
* * * * *
3421776 GATGAACATCTTCCTA-TTACTGGAAGAACTTTCAATTCCTTACAGCTATTAATTGA-TAGAATT
65 GATAAACATCTTCC-AGTTACTGGAAGAACTTCCAATTCATTACACCTATTAATTGACAAG-ATT
* * *
3421839 TTAAGAGAGAAACATT-CTTCCAAGTCTGGAACCGAACTTAAATTAGAACAATGACATAGATATA
128 TGAAGAGAGAAA-ATTCCTTCCAAATCTGGAACCGAACTTAAATTAGAACAATGACATAGACATA
* * * *** * * *
3421903 ATTCTTTCAGACAAGTGGAGCTAAATAATTTGTCTTCGATCTTGCTTAAACTTTCACAACCCAAA
192 ATTCTTTAAGACAAGCGCAGCTAAATAATCCATCTCCAATCTTGCTTAAACTTTCACAACCAAAA
* * * * * *
3421968 ATACTAAGCTTTTCAAGAGATGAACAACCTCCGGTTATAGGAAGAACTTCCAATTCCTTGTAGCT
257 ATACTAAGCTTTTCAAGAGATAAACAACCTCCGGTTATAGAAAGAACTTCCAACTCATTGCAACT
3422033 ATCAATTGACAGATTTTGAAGAGAGG
322 ATCAATTGACAGATTTTGAAGAGAGG
3422059 AAAATTCTTC
Statistics
Matches: 289, Mismatches: 51, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
347 10 0.03
348 271 0.94
349 8 0.03
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (348 bp):
GGTAAATAATCCATCTCCAATCTTGGTTATATTTTTACAACCGAAAATGTTAAGCTTTTAAAGAG
ATAAACATCTTCCAGTTACTGGAAGAACTTCCAATTCATTACACCTATTAATTGACAAGATTTGA
AGAGAGAAAATTCCTTCCAAATCTGGAACCGAACTTAAATTAGAACAATGACATAGACATAATTC
TTTAAGACAAGCGCAGCTAAATAATCCATCTCCAATCTTGCTTAAACTTTCACAACCAAAAATAC
TAAGCTTTTCAAGAGATAAACAACCTCCGGTTATAGAAAGAACTTCCAACTCATTGCAACTATCA
ATTGACAGATTTTGAAGAGAGGG
Found at i:3422156 original size:210 final size:210
Alignment explanation
Indices: 3421744--3422161 Score: 450
Period size: 210 Copynumber: 2.0 Consensus size: 210
3421734 TTGTTTAATT
* * ** * * * *
3421744 TTTCGCAACCGAAAATGTTAAGCTTTTAAAGAGATGAACATCTTCCTATTACTGGAAGAACTTTC
1 TTTCACAACCCAAAATACTAAGCTTTTAAAGAGATGAACAACCTCCGATTACTGGAAGAACTTCC
* * *
3421809 AATTCCTTACAGCTATTAATTGATAGAATTTTAAGAGAGAAACATTCTTCCAAGTCTGGAACCGA
66 AATTCCTTACAGCTATCAATTGACAGAATTTTAAGAGAGAAACATTCTTCCAAATCTGGAACCGA
** * * * * * ***
3421874 ACTTAAATTAGAACAATGACATAGATATAATTCTTTCAGACAAGTGGAGCTAAATAATTTGTCTT
131 ACTTAAATTAGAACAACCACATAAATATAATTCTTTAAGACAAATAGAGCTAAACAACCCGTCTT
3421939 CGATCTTGCTTAAAC
196 CGATCTTGCTTAAAC
* *
3421954 TTTCACAACCCAAAATACTAAGCTTTTCAAGAGATGAACAACCTCCGGTTA-TAGGAAGAACTTC
1 TTTCACAACCCAAAATACTAAGCTTTTAAAGAGATGAACAACCTCCGATTACT-GGAAGAACTTC
**
3422018 CAATTCCTTGTAGCTATCAATTGACAG-ATTTTGAAGAGAGGAAA-ATTCTTCCAAATCTGGAAT
65 CAATTCCTTACAGCTATCAATTGACAGAATTTT-AAGAGA-GAAACATTCTTCCAAATCTGGAA-
* *** * * * **
3422081 CC-AACTTAAATTAGGACAACCTTTTAAATCTAATTCTTTAAGATAAATAGAGGTTGACAACCCG
127 CCGAACTTAAATTAGAACAACCACATAAATATAATTCTTTAAGACAAATAGAGCTAAACAACCCG
3422145 TC-TCTGATCTTGCTTAA
192 TCTTC-GATCTTGCTTAA
3422162 TGTTTTACAC
Statistics
Matches: 169, Mismatches: 34, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
209 8 0.05
210 155 0.92
211 6 0.04
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (210 bp):
TTTCACAACCCAAAATACTAAGCTTTTAAAGAGATGAACAACCTCCGATTACTGGAAGAACTTCC
AATTCCTTACAGCTATCAATTGACAGAATTTTAAGAGAGAAACATTCTTCCAAATCTGGAACCGA
ACTTAAATTAGAACAACCACATAAATATAATTCTTTAAGACAAATAGAGCTAAACAACCCGTCTT
CGATCTTGCTTAAAC
Found at i:3427899 original size:10 final size:10
Alignment explanation
Indices: 3427861--3427902 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
3427851 TTTCAATTAG
* *
3427861 TTTCTAATAG
1 TTTCTAAAAT
*
3427871 TTTATAAAAT
1 TTTCTAAAAT
3427881 TTTCT-AAAT
1 TTTCTAAAAT
3427890 TTTCTAAAAT
1 TTTCTAAAAT
3427900 TTT
1 TTT
3427903 ATGATTTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (10 bp):
TTTCTAAAAT
Found at i:3427899 original size:19 final size:20
Alignment explanation
Indices: 3427861--3427902 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
3427851 TTTCAATTAG
3427861 TTTCTAATAGTTTATAAAAT
1 TTTCTAATAGTTTATAAAAT
* *
3427881 TTTCTAA-ATTTTCTAAAAT
1 TTTCTAATAGTTTATAAAAT
3427900 TTT
1 TTT
3427903 ATGATTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTCTAATAGTTTATAAAAT
Found at i:3429242 original size:8 final size:8
Alignment explanation
Indices: 3429226--3429255 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
3429216 GAAAGAAGAA
3429226 AAGATGGGG
1 AAGA-GGGG
3429235 AAGAGGGG
1 AAGAGGGG
3429243 AAGAGGGG
1 AAGAGGGG
3429251 AAGAG
1 AAGAG
3429256 CATGTGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.57, T:0.03
Consensus pattern (8 bp):
AAGAGGGG
Found at i:3431969 original size:28 final size:28
Alignment explanation
Indices: 3431937--3431998 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
3431927 GTCATTAATT
* * *
3431937 TGTCTTAGCATGCTACATATTTAAATCA
1 TGTCTTAGCATACTACACATTAAAATCA
* *
3431965 TGTCTTAGTATATTACACATTAAAATCA
1 TGTCTTAGCATACTACACATTAAAATCA
3431993 TGTCTT
1 TGTCTT
3431999 TGTTTTGTCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (28 bp):
TGTCTTAGCATACTACACATTAAAATCA
Found at i:3432186 original size:16 final size:16
Alignment explanation
Indices: 3432161--3432191 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3432151 GTAGCTAAAG
3432161 CATGCAGCTGAACATT
1 CATGCAGCTGAACATT
*
3432177 CATGCGGCTGAACAT
1 CATGCAGCTGAACAT
3432192 ATATGTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (16 bp):
CATGCAGCTGAACATT
Found at i:3432561 original size:22 final size:23
Alignment explanation
Indices: 3432533--3432577 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
3432523 ATGCAATCGT
*
3432533 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATATTAGA
*
3432555 AGATATGATTTTGTAATATTAGA
1 AGATATGATTATGTAATATTAGA
3432578 TATTTGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATATTAGA
Found at i:3434754 original size:264 final size:264
Alignment explanation
Indices: 3434284--3434815 Score: 1037
Period size: 264 Copynumber: 2.0 Consensus size: 264
3434274 ATTCGGGTCG
3434284 AATCAAAACAGTGAACTCGAAAAGCATTCCCATAACGGGTGTGGCTAAAGGAGTGGAACTCAGGC
1 AATCAAAACAGTGAACTCGAAAAGCATTCCCATAACGGGTGTGGCTAAAGGAGTGGAACTCAGGC
3434349 TTGGCGAGTGGACAGGCAAGGCAACCATTAAGGTAATCCCCCTTGATGATTATGGTTTTATGGTT
66 TTGGCGAGTGGACAGGCAAGGCAACCATTAAGGTAATCCCCCTTGATGATTATGGTTTTATGGTT
*
3434414 GGATTATGCTTACTTGACTGACTTAATACGGATATTCATCCTTCCGAGAATTACATGATGATCTC
131 GGATTATGCTTACTTGACTGACTTAATACGGATATTCATCCTTCCAAGAATTACATGATGATCTC
3434479 TGATTCGAACCATTGATATATAATGCGAGTGAAAAGAAAGGGAAGCATGGGAGGAAAAAAATTGT
196 TGATTCGAACCATTGATATATAATGCGAGTGAAAAGAAAGGGAAGCATGGGAGGAAAAAAATTGT
3434544 CGGC
261 CGGC
*
3434548 AATCAAAACAGTGAACTCGAAAAGCATTCCCATAACGGGTGTGTCTAAAGGAGTGGAACTCAGGC
1 AATCAAAACAGTGAACTCGAAAAGCATTCCCATAACGGGTGTGGCTAAAGGAGTGGAACTCAGGC
3434613 TTGGCGAGTGGACAGGCAAGGCAACCATTAAGGTAATCCCCCTTGATGATTATGGTTTTATGGTT
66 TTGGCGAGTGGACAGGCAAGGCAACCATTAAGGTAATCCCCCTTGATGATTATGGTTTTATGGTT
3434678 GGATTATGCTTACTTGACTGACTTAATACGGATATTCATCCTTCCAAGAATTACATGATGATCTC
131 GGATTATGCTTACTTGACTGACTTAATACGGATATTCATCCTTCCAAGAATTACATGATGATCTC
*
3434743 TGATTCGAACCATTGATATATGATGCGAGTGAAAAGAAAGGGAAGCATGGGAGGAAAAAAATTGT
196 TGATTCGAACCATTGATATATAATGCGAGTGAAAAGAAAGGGAAGCATGGGAGGAAAAAAATTGT
3434808 CGGC
261 CGGC
3434812 AATC
1 AATC
3434816 CAATTTGCCA
Statistics
Matches: 265, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
264 265 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (264 bp):
AATCAAAACAGTGAACTCGAAAAGCATTCCCATAACGGGTGTGGCTAAAGGAGTGGAACTCAGGC
TTGGCGAGTGGACAGGCAAGGCAACCATTAAGGTAATCCCCCTTGATGATTATGGTTTTATGGTT
GGATTATGCTTACTTGACTGACTTAATACGGATATTCATCCTTCCAAGAATTACATGATGATCTC
TGATTCGAACCATTGATATATAATGCGAGTGAAAAGAAAGGGAAGCATGGGAGGAAAAAAATTGT
CGGC
Found at i:3437971 original size:22 final size:23
Alignment explanation
Indices: 3437918--3437972 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
3437908 ATGCAATCGT
*
3437918 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTTTGTAATCTTAGA
3437940 AGATATGATTTTGTAATCTTAG-
1 AGATATGATTTTGTAATCTTAGA
*
3437962 AGATTTGATTT
1 AGATATGATTT
3437973 GGAGATGTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.44
Consensus pattern (23 bp):
AGATATGATTTTGTAATCTTAGA
Found at i:3439157 original size:16 final size:17
Alignment explanation
Indices: 3439120--3439162 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
3439110 TAACCGTCAC
3439120 ACTTTTTTTTATATTCA
1 ACTTTTTTTTATATTCA
3439137 A-TTTTTTTTA-A-TCGA
1 ACTTTTTTTTATATTC-A
3439152 ACTTTTTTTTA
1 ACTTTTTTTTA
3439163 CTTCTCTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 2 0.08
15 3 0.12
16 18 0.75
17 1 0.04
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.65
Consensus pattern (17 bp):
ACTTTTTTTTATATTCA
Found at i:3440429 original size:28 final size:28
Alignment explanation
Indices: 3440372--3440431 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
3440362 GGACAAAACA
* * *
3440372 AAGACATGATTTTAATGTGTAATATACT
1 AAGACATGATTTAAATATGTAACATACT
* *
3440400 AAGACATGATTTAAATATGTAGCATGCT
1 AAGACATGATTTAAATATGTAACATACT
3440428 AAGA
1 AAGA
3440432 AAAAATAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (28 bp):
AAGACATGATTTAAATATGTAACATACT
Found at i:3443820 original size:191 final size:191
Alignment explanation
Indices: 3443488--3443852 Score: 507
Period size: 191 Copynumber: 1.9 Consensus size: 191
3443478 TGAAGTTTTG
* * * * **
3443488 TGGTTGTTTCCCCAGTGGTTCTTCTTTATCAAGCTTTCTATGATTTTTAAATGAGTTTAACCAGA
1 TGGTTGTTTCCCCACTGATTCTTATTCATCAAGCTTTCTATGATTCATAAATGAGTTTAACCAGA
*
3443553 GTTATCTCACACTACTGCAGCAAATTTCTTCCTATATATTTTTGGGCTTATTTTTGTATGAGCAG
66 GTTATCTCACACTACTGCAACAAATTTCTTCCTATATATTTTTGGGCTTATTTTTGTATGAGCAG
*** * *
3443618 GCTTGTGGTTGG-GTGTACATTTGTTACCTCTACATGTATGAATGAGTTTTTTTGGATTTC
131 GCCAATGGTTGGAGTGTACACTTGCTACCTCTACATGTATGAATGAGTTTTTTTGGATTTC
* * *
3443678 TGGTTGTTTTCCTACTGATTCTTATTCATCAAGCTTTCTATGATTCATAAATGAGTTTTAACTAG
1 TGGTTGTTTCCCCACTGATTCTTATTCATCAAGCTTTCTATGATTCATAAATGAG-TTTAACCAG
* * * *
3443743 AGTTATCTCACACTACTGCAACAAATTTCTTTCTATGTGTTTTTGGGTTTATTTTTGTATGAGCA
65 AGTTATCTCACACTACTGCAACAAATTTCTTCCTATATATTTTTGGGCTTATTTTTGTATGAGCA
* * * *
3443808 TGCCAATGGTTGGAGTGTACACTTGCTACCTGTGCATGTGTGAAT
130 GGCCAATGGTTGGAGTGTACACTTGCTACCTCTACATGTATGAAT
3443853 AAATTTTGTT
Statistics
Matches: 150, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
190 47 0.31
191 77 0.51
192 26 0.17
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.44
Consensus pattern (191 bp):
TGGTTGTTTCCCCACTGATTCTTATTCATCAAGCTTTCTATGATTCATAAATGAGTTTAACCAGA
GTTATCTCACACTACTGCAACAAATTTCTTCCTATATATTTTTGGGCTTATTTTTGTATGAGCAG
GCCAATGGTTGGAGTGTACACTTGCTACCTCTACATGTATGAATGAGTTTTTTTGGATTTC
Found at i:3450564 original size:19 final size:19
Alignment explanation
Indices: 3450537--3450573 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
3450527 TATTTTAAAG
*
3450537 TTATTTAGGTAGATAAATT
1 TTATATAGGTAGATAAATT
3450556 TTATATAGGTAGATAAAT
1 TTATATAGGTAGATAAAT
3450574 CTTAGAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (19 bp):
TTATATAGGTAGATAAATT
Found at i:3454449 original size:18 final size:19
Alignment explanation
Indices: 3454426--3454465 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
3454416 TATTTTAAAG
3454426 TTATTTA-GTAGATAAATC
1 TTATTTAGGTAGATAAATC
3454444 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
3454463 TTA
1 TTA
3454466 GAATAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:3466247 original size:5 final size:5
Alignment explanation
Indices: 3466226--3466293 Score: 70
Period size: 5 Copynumber: 13.4 Consensus size: 5
3466216 TTACTTTATT
3466226 TAATA TATATAA TAATA TAATA TAATA TAAT- TAATA TAATA TATTATA
1 TAATA TA-AT-A TAATA TAATA TAATA TAATA TAATA TAATA TA--ATA
*
3466274 TTATA TAATA -AA-A TAATA TA
1 TAATA TAATA TAATA TAATA TA
3466294 CATAACATAA
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
3 1 0.02
4 8 0.15
5 34 0.63
6 4 0.07
7 7 0.13
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TAATA
Found at i:3466250 original size:10 final size:10
Alignment explanation
Indices: 3466226--3466293 Score: 70
Period size: 12 Copynumber: 6.7 Consensus size: 10
3466216 TTACTTTATT
3466226 TAATATATATAA
1 TAATATA-AT-A
3466238 TAATATAATA
1 TAATATAATA
3466248 TAATATAAT-
1 TAATATAATA
3466257 TAATATAATA
1 TAATATAATA
*
3466267 TATTATATTATA
1 TA--ATATAATA
3466279 TAATA-AA-A
1 TAATATAATA
3466287 TAATATA
1 TAATATA
3466294 CATAACATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
8 6 0.12
9 11 0.22
10 15 0.30
11 2 0.04
12 16 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
TAATATAATA
Found at i:3466260 original size:31 final size:29
Alignment explanation
Indices: 3466225--3466298 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 29
3466215 TTTACTTTAT
3466225 TTAATATATATAATAATATAATATAATATAA
1 TTAATATA-ATAATAATATAATATAATA-AA
* *
3466256 TTAATATAATATATTATATTATATAATAAA
1 TTAATATAATA-ATAATATAATATAATAAA
*
3466286 ATAATATACATAA
1 TTAATATA-ATAA
3466299 CATAAAAATC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
30 13 0.34
31 25 0.66
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (29 bp):
TTAATATAATAATAATATAATATAATAAA
Found at i:3466303 original size:14 final size:13
Alignment explanation
Indices: 3466227--3466303 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 13
3466217 TACTTTATTT
3466227 AATATATATAATAA
1 AATA-ATATAATAA
*
3466241 TATAATATAATATA
1 AATAATATAATA-A
*
3466255 ATTAATATAATATA
1 AATAATATAATA-A
*
3466269 TTATATTATATAATAA
1 --A-ATAATATAATAA
3466285 AATAATATACATAA
1 AATAATATA-ATAA
*
3466299 CATAA
1 AATAA
3466304 AAATCTCATA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
13 15 0.29
14 25 0.49
16 2 0.04
17 9 0.18
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (13 bp):
AATAATATAATAA
Found at i:3467660 original size:23 final size:23
Alignment explanation
Indices: 3467634--3467708 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
3467624 GTGTTATTGA
3467634 TCAGTGGTAGCTTCGGCTACGTT
1 TCAGTGGTAGCTTCGGCTACGTT
3467657 TCAGTGGTAGCTTCGGCTACGTT
1 TCAGTGGTAGCTTCGGCTACGTT
* * * *
3467680 ACAGTGGTAGCTTTGGCTACATA
1 TCAGTGGTAGCTTCGGCTACGTT
3467703 TCAGTG
1 TCAGTG
3467709 TTGCACTTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.33
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACGTT
Found at i:3472309 original size:40 final size:40
Alignment explanation
Indices: 3471791--3472309 Score: 527
Period size: 40 Copynumber: 12.9 Consensus size: 40
3471781 AGAAATGAAG
* *
3471791 ACGTGCTCCTGATTGTAC-TCGGGTACCCCTGAATGGACAT
1 ACGTGCTCCTGTTTGTACTTC-GGTACCCCTGAATGCACAT
* * *
3471831 ACGTGCTCCTGTTTGTATTTCGGTACCCCTGAACGCATAT
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* * * * * *
3471871 ATGTACTCCTGCTGTTTGTATTTCGATACCCTTGAATGCACAA
1 ACGTGCT-C--CTGTTTGTACTTCGGTACCCCTGAATGCACAT
* * *
3471914 ACATGCTCCTGTTTGTACTTTGGTACCCTTGAATGCACAT
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* * ***
3471954 ACGTGCTCCTGTTTGTACTTCGGTACCCTTCAACATACAT
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
** * *
3471994 ATTTTCTCCTATTTGTACTTCGGTACCCCTGAATGCACAT
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* *
3472034 ACGTGCTCCTGTTTGTACTTCGGTACCTCTGAATGCACAA
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* * ** * *
3472074 ACATGCTCCGGTTTGTACTTTAGTACCCCTGAATACATAT
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* ** * *
3472114 ACGTGCTCTTGTTTGTACTTCGGTACCTTTAAACGCACAT
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* * * *
3472154 ACGTGCTCCTATTTATACTTTGGTACCCCTGAATGCACAG
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* * *
3472194 ACGTGCTCCTGTTTGTACTTTGATACCCCTAAATGCACAT
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* * *
3472234 ACATGCTCCTGTTTGTACTTCGGTACCCTTAAATGCACAT
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
* * * * * *
3472274 ACGTACTCCTATTTGTAATTCAGTGCCTCTGAATGC
1 ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGC
3472310 CTCAGAGTTG
Statistics
Matches: 389, Mismatches: 86, Indels: 8
0.81 0.18 0.02
Matches are distributed among these distances:
40 354 0.91
41 3 0.01
42 1 0.00
43 31 0.08
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (40 bp):
ACGTGCTCCTGTTTGTACTTCGGTACCCCTGAATGCACAT
Found at i:3474390 original size:11 final size:12
Alignment explanation
Indices: 3474374--3474420 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 12
3474364 CTTAATCACT
3474374 TTAATATTAA-A
1 TTAATATTAAGA
3474385 TTAATA-TAAGA
1 TTAATATTAAGA
3474396 TT--TATTAAGA
1 TTAATATTAAGA
*
3474406 TAAATATT-AGA
1 TTAATATTAAGA
3474417 TTAA
1 TTAA
3474421 GTTTAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
9 2 0.07
10 9 0.30
11 15 0.50
12 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (12 bp):
TTAATATTAAGA
Found at i:3474417 original size:21 final size:20
Alignment explanation
Indices: 3474378--3474418 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
3474368 ATCACTTTAA
*
3474378 TATTAAATTAATATAAGATT
1 TATTAAATAAATATAAGATT
*
3474398 TATTAAGATAAATATTAGATT
1 TATTAA-ATAAATATAAGATT
3474419 AAGTTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
TATTAAATAAATATAAGATT
Found at i:3475012 original size:13 final size:13
Alignment explanation
Indices: 3474996--3475020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3474986 TTTTTCAAGA
3474996 AAATTCTTTAATC
1 AAATTCTTTAATC
3475009 AAATTCTTTAAT
1 AAATTCTTTAAT
3475021 TGAACAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:3476123 original size:16 final size:16
Alignment explanation
Indices: 3476102--3476132 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3476092 CTATGCACGC
*
3476102 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
3476118 AAAATACAAAAGACA
1 AAAATACAAAAGACA
3476133 TAATAGTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:3478899 original size:21 final size:21
Alignment explanation
Indices: 3478875--3478945 Score: 53
Period size: 21 Copynumber: 3.5 Consensus size: 21
3478865 TGACAATTAA
3478875 TTAATTAATTTTTTAAAAATT
1 TTAATTAATTTTTTAAAAATT
* * *
3478896 TTAA-AAATAATTATAAAAATAT
1 TTAATTAAT-TTTTTAAAAAT-T
3478918 TT--TTAATTTTCTTAAAAA--
1 TTAATTAATTTT-TTAAAAATT
3478936 TTAATTAATT
1 TTAATTAATT
3478946 GCCAACGTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 13
0.67 0.11 0.23
Matches are distributed among these distances:
18 2 0.05
20 11 0.29
21 22 0.58
22 3 0.08
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (21 bp):
TTAATTAATTTTTTAAAAATT
Found at i:3505983 original size:12 final size:12
Alignment explanation
Indices: 3505963--3505992 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
3505953 TAATTTTAAC
3505963 TTTTT-ATATAT
1 TTTTTAATATAT
3505974 TTTTTAATATAT
1 TTTTTAATATAT
3505986 TTTTTAA
1 TTTTTAA
3505993 AAAATAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTTAATATAT
Found at i:3506005 original size:22 final size:22
Alignment explanation
Indices: 3505980--3506021 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
3505970 ATATTTTTTA
3505980 ATATATTTTTTAAAAAATAATT
1 ATATATTTTTTAAAAAATAATT
* *
3506002 ATATTTTTTTTAAAATATAA
1 ATATATTTTTTAAAAAATAA
3506022 ATTTTGGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATATATTTTTTAAAAAATAATT
Found at i:3509967 original size:19 final size:19
Alignment explanation
Indices: 3509945--3509982 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
3509935 TGATTATTAC
3509945 AAAATTAT-TAAGATTTCTT
1 AAAATTATCTAAG-TTTCTT
*
3509964 AAAATTTTCTAAGTTTCTT
1 AAAATTATCTAAGTTTCTT
3509983 TGAAAGTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (19 bp):
AAAATTATCTAAGTTTCTT
Found at i:3516006 original size:44 final size:44
Alignment explanation
Indices: 3515956--3516040 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
3515946 ATTAAAACCT
*
3515956 AATTAATACTATTGTTAATATATTTTCATTAAATTCCAATACCC
1 AATTAATACTATTGTTAATATACTTTCATTAAATTCCAATACCC
*
3516000 AATTAATACTATTGTTAATATACTTTCATTAAATTCGAATA
1 AATTAATACTATTGTTAATATACTTTCATTAAATTCCAATA
3516041 TGTGATATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.44
Consensus pattern (44 bp):
AATTAATACTATTGTTAATATACTTTCATTAAATTCCAATACCC
Found at i:3517157 original size:14 final size:14
Alignment explanation
Indices: 3517138--3517164 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3517128 AACACTAATG
3517138 GTGTTAAAAAATTC
1 GTGTTAAAAAATTC
3517152 GTGTTAAAAAATT
1 GTGTTAAAAAATT
3517165 ATGCATTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.37
Consensus pattern (14 bp):
GTGTTAAAAAATTC
Found at i:3517452 original size:31 final size:30
Alignment explanation
Indices: 3517419--3517505 Score: 122
Period size: 31 Copynumber: 2.9 Consensus size: 30
3517409 TTTAAAATAT
**
3517419 TTTTAAAATACTTTTTTTAAT-TTTTTTTAA
1 TTTTAAAATA-TTTTTAAAATATTTTTTTAA
3517449 TTTTAAAATATTTTTAAAATACTTTTTTTAA
1 TTTTAAAATATTTTTAAAATA-TTTTTTTAA
*
3517480 TTTTAAAATATTTTAAAAATATTTTT
1 TTTTAAAATATTTTTAAAATATTTTT
3517506 AAAATACTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
29 8 0.15
30 15 0.29
31 29 0.56
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTTAAAATATTTTTAAAATATTTTTTTAA
Found at i:3517463 original size:41 final size:41
Alignment explanation
Indices: 3517406--3517532 Score: 202
Period size: 41 Copynumber: 3.1 Consensus size: 41
3517396 NNNNNNNNNN
**
3517406 AATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTT
1 AATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTAA
*
3517447 AATTTTAAAATATTTTTAAAATACTTTTTTTAA-TTTTAAA
1 AATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTAA
3517487 ATATTTTAAAAATATTTTTAAAATACTTTTTTTAATTTTTTAA
1 A-ATTTT-AAAATATTTTTAAAATACTTTTTTTAATTTTTTAA
3517530 AAT
1 AAT
3517533 AAAAATGGGC
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
40 5 0.06
41 38 0.48
42 29 0.37
43 7 0.09
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.58
Consensus pattern (41 bp):
AATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTAA
Found at i:3519718 original size:5 final size:5
Alignment explanation
Indices: 3519708--3519754 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
3519698 GAACAAATAT
* *
3519708 ATTCG ATTCG ATTCG ATTCG AATTCC ATCTC- ACTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG -ATTCG AT-TCG ATTCG ATTCG ATTCG A
3519755 GAAAACTTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
4 2 0.06
5 28 0.78
6 6 0.17
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (5 bp):
ATTCG
Found at i:3521788 original size:20 final size:21
Alignment explanation
Indices: 3521762--3521835 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 21
3521752 AACTATACAT
3521762 TTAAAAATAATTATAATTTAA
1 TTAAAAATAATTATAATTTAA
** *
3521783 -TAAAAATTGTGATAATTACATAA
1 TTAAAAATAATTATAATT---TAA
*
3521806 TTAAAAATAATTAGAATTTAAA
1 TTAAAAATAATTATAATTT-AA
3521828 TTGAAAAA
1 TT-AAAAA
3521836 AAAGGAGAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
20 14 0.35
21 1 0.03
22 4 0.10
23 8 0.20
24 13 0.32
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (21 bp):
TTAAAAATAATTATAATTTAA
Found at i:3522264 original size:32 final size:31
Alignment explanation
Indices: 3522202--3522272 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 31
3522192 ATTCAATAAT
** *
3522202 TTAAATAAAAAATATTATTTTACACTAATTAC
1 TTAAAT-AAAAATATTATTTTACAAAAATTAA
3522234 TGTAAATAAAAATATTATATTTA-AAAAATTAA
1 T-TAAATAAAAATATTAT-TTTACAAAAATTAA
3522266 TTAAATA
1 TTAAATA
3522273 TTAAACAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 6 0.18
32 19 0.56
33 9 0.26
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.39
Consensus pattern (31 bp):
TTAAATAAAAATATTATTTTACAAAAATTAA
Found at i:3524952 original size:2 final size:2
Alignment explanation
Indices: 3524945--3524980 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
3524935 ACTGCTAAAG
3524945 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3524981 CATTTTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3527098 original size:110 final size:112
Alignment explanation
Indices: 3526934--3527155 Score: 430
Period size: 110 Copynumber: 2.0 Consensus size: 112
3526924 ACTCAAATTA
3526934 TTTTTTCCTTATATATTTTTGTCCAATTTTATAACGATGTTTTAAAAAATAGATAGATCTATAAA
1 TTTTTTCCTTATATATTTTTGTCCAATTTTATAACGATGTTTTAAAAAATAGATAGATCTATAAA
3526999 AATATACCACGTGATGTTTTTAATTAAAAAATACATATATTTTTATC
66 AATATACCACGTGATGTTTTTAATTAAAAAATACATATATTTTTATC
3527046 TTTTTTCC-T-TATATTTTTGTCCAATTTTATAACGATGTTTTAAAAAATAGATAGATCTATAAA
1 TTTTTTCCTTATATATTTTTGTCCAATTTTATAACGATGTTTTAAAAAATAGATAGATCTATAAA
3527109 AATATACCACGTGATGTTTTTAATTAAAAAATACATATATTTTTATC
66 AATATACCACGTGATGTTTTTAATTAAAAAATACATATATTTTTATC
3527156 ATATATTTAT
Statistics
Matches: 110, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
110 101 0.92
111 1 0.01
112 8 0.07
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.45
Consensus pattern (112 bp):
TTTTTTCCTTATATATTTTTGTCCAATTTTATAACGATGTTTTAAAAAATAGATAGATCTATAAA
AATATACCACGTGATGTTTTTAATTAAAAAATACATATATTTTTATC
Found at i:3527186 original size:110 final size:109
Alignment explanation
Indices: 3526962--3527187 Score: 330
Period size: 110 Copynumber: 2.1 Consensus size: 109
3526952 TTGTCCAATT
3526962 TTATAACGATGTTTTAAAAAATAGATAGATCTATAAAAATATACCACGTGATGTTTTTAATTAAA
1 TTATAACGATGTTTTAAAAAATAGATAGATCTATAAAAATATACCACGTGATGTTTTTAATTAAA
* * ** ** **
3527027 AAATACATATATTTTTATCTTTTTTCCTTATATTTTTGTCCAATT
66 AAATACATATATTTTTATCTTATTT-CATATATAATTGTAAAAAA
3527072 TTATAACGATGTTTTAAAAAATAGATAGATCTATAAAAATATACCACGTGATGTTTTTAATTAAA
1 TTATAACGATGTTTTAAAAAATAGATAGATCTATAAAAATATACCACGTGATGTTTTTAATTAAA
3527137 AAATACATATATTTTTATCATATATTT-ATATATCAATT-TAAAAAA
66 AAATACATATATTTTTATC-T-TATTTCATATAT-AATTGTAAAAAA
3527182 TTATAA
1 TTATAA
3527188 AACATAAAAA
Statistics
Matches: 105, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
110 98 0.93
111 3 0.03
112 4 0.04
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (109 bp):
TTATAACGATGTTTTAAAAAATAGATAGATCTATAAAAATATACCACGTGATGTTTTTAATTAAA
AAATACATATATTTTTATCTTATTTCATATATAATTGTAAAAAA
Found at i:3532424 original size:16 final size:16
Alignment explanation
Indices: 3532403--3532436 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3532393 CCAATATCCA
* *
3532403 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
3532419 ATTATCACATTTACAC
1 ATTATCACATTTACAC
3532435 AT
1 AT
3532437 ATATATTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:3541553 original size:206 final size:206
Alignment explanation
Indices: 3541199--3541614 Score: 823
Period size: 206 Copynumber: 2.0 Consensus size: 206
3541189 TTCTTACAAA
*
3541199 TTTTTATAAATTTTTAAAAAATATAAATTATAACGCCCCAAATTTTAAAAATTTGTTTGATAAAT
1 TTTTTATAAATTTTTAAAAAATATAAACTATAACGCCCCAAATTTTAAAAATTTGTTTGATAAAT
3541264 TTTATCAATAATTAAATATTTATTTTAGTGGTTGAGTGTTTTGTTTATATGTTTAAGATCGGGGG
66 TTTATCAATAATTAAATATTTATTTTAGTGGTTGAGTGTTTTGTTTATATGTTTAAGATCGGGGG
3541329 TTCAAGTCTTCCTTCTTTAATTTTTACTGTTTATTTTGGTTCAAGCCCTATCCTTAAACTCTCGA
131 TTCAAGTCTTCCTTCTTTAATTTTTACTGTTTATTTTGGTTCAAGCCCTATCCTTAAACTCTCGA
3541394 CTTAAGTTTAT
196 CTTAAGTTTAT
3541405 TTTTTATAAATTTTTAAAAAATATAAACTATAACGCCCCAAATTTTAAAAATTTGTTTGATAAAT
1 TTTTTATAAATTTTTAAAAAATATAAACTATAACGCCCCAAATTTTAAAAATTTGTTTGATAAAT
3541470 TTTATCAATAATTAAATATTTATTTTAGTGGTTGAGTGTTTTGTTTATATGTTTAAGATCGGGGG
66 TTTATCAATAATTAAATATTTATTTTAGTGGTTGAGTGTTTTGTTTATATGTTTAAGATCGGGGG
3541535 TTCAAGTCTTCCTTCTTTAATTTTTACTGTTTATTTTGGTTCAAGCCCTATCCTTAAACTCTCGA
131 TTCAAGTCTTCCTTCTTTAATTTTTACTGTTTATTTTGGTTCAAGCCCTATCCTTAAACTCTCGA
3541600 CTTAAGTTTAT
196 CTTAAGTTTAT
3541611 TTTT
1 TTTT
3541615 ATGTTAATTT
Statistics
Matches: 209, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
206 209 1.00
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (206 bp):
TTTTTATAAATTTTTAAAAAATATAAACTATAACGCCCCAAATTTTAAAAATTTGTTTGATAAAT
TTTATCAATAATTAAATATTTATTTTAGTGGTTGAGTGTTTTGTTTATATGTTTAAGATCGGGGG
TTCAAGTCTTCCTTCTTTAATTTTTACTGTTTATTTTGGTTCAAGCCCTATCCTTAAACTCTCGA
CTTAAGTTTAT
Found at i:3545284 original size:16 final size:16
Alignment explanation
Indices: 3545263--3545296 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3545253 CCAATATCCA
* *
3545263 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
3545279 ATTATCACATTTACAC
1 ATTATCACATTTACAC
3545295 AT
1 AT
3545297 ATATATTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:3546673 original size:535 final size:535
Alignment explanation
Indices: 3545664--3546733 Score: 2140
Period size: 535 Copynumber: 2.0 Consensus size: 535
3545654 AGTCCCTGAA
3545664 CCGAGACTAATTTTTATTTTTCACATATAATTCTATATTTTCATACAAATTCCACTTTAAACTAA
1 CCGAGACTAATTTTTATTTTTCACATATAATTCTATATTTTCATACAAATTCCACTTTAAACTAA
3545729 ACTTAACTCCTTATTTTCACTTAAATCCCTAAATTTCAAAATTTTCACAATTTAATCCCTAATAC
66 ACTTAACTCCTTATTTTCACTTAAATCCCTAAATTTCAAAATTTTCACAATTTAATCCCTAATAC
3545794 TCAAAATTTTCAATTTGTTCTACAATTTAATCCTTTTCCATTTCTAACTTAAAAATATATCAATT
131 TCAAAATTTTCAATTTGTTCTACAATTTAATCCTTTTCCATTTCTAACTTAAAAATATATCAATT
3545859 TAATCCCTAATACTAAAATTATTCAACATTAACAACATTTAAAAACTCAATCAATGCTAAAATTT
196 TAATCCCTAATACTAAAATTATTCAACATTAACAACATTTAAAAACTCAATCAATGCTAAAATTT
3545924 CAACATGGGTTTGGTAATACTTAACACCGGGATTCCAAAAACATTAAATTTACAAAAAAGGACTA
261 CAACATGGGTTTGGTAATACTTAACACCGGGATTCCAAAAACATTAAATTTACAAAAAAGGACTA
3545989 AATTGACTAACCAATTAAACTTTGAAATTTTGGAGCCCTAGCCTTGTGTGACTTCTTCTTTTCTT
326 AATTGACTAACCAATTAAACTTTGAAATTTTGGAGCCCTAGCCTTGTGTGACTTCTTCTTTTCTT
3546054 CTTTCTCTTTTTCTTTTTTTTTTCTTTCAAATTTTGTTTGGCTTTCTATTTCTTTTTCTGTTACT
391 CTTTCTCTTTTTCTTTTTTTTTTCTTTCAAATTTTGTTTGGCTTTCTATTTCTTTTTCTGTTACT
3546119 TATTTGTTTTATTTTTATTATATAATATATTTTACTTAATACTTAAGATAACATATTATAATATA
456 TATTTGTTTTATTTTTATTATATAATATATTTTACTTAATACTTAAGATAACATATTATAATATA
3546184 TTTTAACTTTAATAT
521 TTTTAACTTTAATAT
3546199 CCGAGACTAATTTTTATTTTTCACATATAATTCTATATTTTCATACAAATTCCACTTTAAACTAA
1 CCGAGACTAATTTTTATTTTTCACATATAATTCTATATTTTCATACAAATTCCACTTTAAACTAA
3546264 ACTTAACTCCTTATTTTCACTTAAATCCCTAAATTTCAAAATTTTCACAATTTAATCCCTAATAC
66 ACTTAACTCCTTATTTTCACTTAAATCCCTAAATTTCAAAATTTTCACAATTTAATCCCTAATAC
3546329 TCAAAATTTTCAATTTGTTCTACAATTTAATCCTTTTCCATTTCTAACTTAAAAATATATCAATT
131 TCAAAATTTTCAATTTGTTCTACAATTTAATCCTTTTCCATTTCTAACTTAAAAATATATCAATT
3546394 TAATCCCTAATACTAAAATTATTCAACATTAACAACATTTAAAAACTCAATCAATGCTAAAATTT
196 TAATCCCTAATACTAAAATTATTCAACATTAACAACATTTAAAAACTCAATCAATGCTAAAATTT
3546459 CAACATGGGTTTGGTAATACTTAACACCGGGATTCCAAAAACATTAAATTTACAAAAAAGGACTA
261 CAACATGGGTTTGGTAATACTTAACACCGGGATTCCAAAAACATTAAATTTACAAAAAAGGACTA
3546524 AATTGACTAACCAATTAAACTTTGAAATTTTGGAGCCCTAGCCTTGTGTGACTTCTTCTTTTCTT
326 AATTGACTAACCAATTAAACTTTGAAATTTTGGAGCCCTAGCCTTGTGTGACTTCTTCTTTTCTT
3546589 CTTTCTCTTTTTCTTTTTTTTTTCTTTCAAATTTTGTTTGGCTTTCTATTTCTTTTTCTGTTACT
391 CTTTCTCTTTTTCTTTTTTTTTTCTTTCAAATTTTGTTTGGCTTTCTATTTCTTTTTCTGTTACT
3546654 TATTTGTTTTATTTTTATTATATAATATATTTTACTTAATACTTAAGATAACATATTATAATATA
456 TATTTGTTTTATTTTTATTATATAATATATTTTACTTAATACTTAAGATAACATATTATAATATA
3546719 TTTTAACTTTAATAT
521 TTTTAACTTTAATAT
3546734 TATAATATAT
Statistics
Matches: 535, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
535 535 1.00
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.44
Consensus pattern (535 bp):
CCGAGACTAATTTTTATTTTTCACATATAATTCTATATTTTCATACAAATTCCACTTTAAACTAA
ACTTAACTCCTTATTTTCACTTAAATCCCTAAATTTCAAAATTTTCACAATTTAATCCCTAATAC
TCAAAATTTTCAATTTGTTCTACAATTTAATCCTTTTCCATTTCTAACTTAAAAATATATCAATT
TAATCCCTAATACTAAAATTATTCAACATTAACAACATTTAAAAACTCAATCAATGCTAAAATTT
CAACATGGGTTTGGTAATACTTAACACCGGGATTCCAAAAACATTAAATTTACAAAAAAGGACTA
AATTGACTAACCAATTAAACTTTGAAATTTTGGAGCCCTAGCCTTGTGTGACTTCTTCTTTTCTT
CTTTCTCTTTTTCTTTTTTTTTTCTTTCAAATTTTGTTTGGCTTTCTATTTCTTTTTCTGTTACT
TATTTGTTTTATTTTTATTATATAATATATTTTACTTAATACTTAAGATAACATATTATAATATA
TTTTAACTTTAATAT
Found at i:3549118 original size:29 final size:27
Alignment explanation
Indices: 3549082--3549136 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
3549072 TAACTTTCAT
* *
3549082 TTTCCCCTTTATTTTCCATTCTCTTTTG
1 TTTCCCCTCTATTCTCCA-TCTCTTTTG
*
3549110 TTTCTCCCTCTGTTCTCCATCTCTTTT
1 TTTC-CCCTCTATTCTCCATCTCTTTT
3549137 AACCTAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.05, C:0.33, G:0.04, T:0.58
Consensus pattern (27 bp):
TTTCCCCTCTATTCTCCATCTCTTTTG
Found at i:3551370 original size:29 final size:29
Alignment explanation
Indices: 3551286--3551396 Score: 107
Period size: 31 Copynumber: 3.7 Consensus size: 29
3551276 GATTAAATTA
* *
3551286 AAATTAAAGCTTCCA-GTATATAATTGAACA
1 AAATTAAAG-TT-CATGTATATAATTGCACT
* *
3551316 ACAATTAGAATTTCATGTGTATAATTGCACT
1 A-AATTA-AAGTTCATGTATATAATTGCACT
*
3551347 AAATTAAAGTTCATGTATACAATTGCACATT
1 AAATTAAAGTTCATGTATATAATTGCAC--T
*
3551378 AAATCAAAGTTCATGTATA
1 AAATTAAAGTTCATGTATA
3551397 ATTTTGATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
29 19 0.28
30 8 0.12
31 39 0.57
32 2 0.03
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (29 bp):
AAATTAAAGTTCATGTATATAATTGCACT
Found at i:3563215 original size:37 final size:37
Alignment explanation
Indices: 3563166--3563236 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
3563156 AAAAATATTA
3563166 TTATTTTAATAGT-TTAATATTAAATTTAAT-TTAATAT
1 TTATTTTAATAGTATT-ATATT-AATTTAATATTAATAT
* *
3563203 TTATTTTGATAGTATTTTATTAATTTAATATTAA
1 TTATTTTAATAGTATTATATTAATTTAATATTAA
3563237 AGTGGTTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 8 0.27
37 20 0.67
38 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (37 bp):
TTATTTTAATAGTATTATATTAATTTAATATTAATAT
Found at i:3564257 original size:20 final size:20
Alignment explanation
Indices: 3564234--3564296 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
3564224 CTTATCTATC
*
3564234 TATTTTATAATTATTCATAA
1 TATTTTATAATTATTAATAA
* *
3564254 TATTATT-TAATTGTAAATAA
1 TATT-TTATAATTATTAATAA
* *
3564274 TA-TTTAT-ATTATTTATAT
1 TATTTTATAATTATTAATAA
3564292 TATTT
1 TATTT
3564297 ATCTCCTTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
18 11 0.33
19 4 0.12
20 16 0.48
21 2 0.06
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (20 bp):
TATTTTATAATTATTAATAA
Found at i:3564288 original size:9 final size:9
Alignment explanation
Indices: 3564274--3564298 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
3564264 TTGTAAATAA
3564274 TATTTATAT
1 TATTTATAT
3564283 TATTTATAT
1 TATTTATAT
3564292 TATTTAT
1 TATTTAT
3564299 CTCCTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TATTTATAT
Found at i:3605796 original size:2 final size:2
Alignment explanation
Indices: 3605789--3605823 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
3605779 TTTGTATGTT
*
3605789 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3605824 TTAAAATAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3611043 original size:30 final size:30
Alignment explanation
Indices: 3611009--3611066 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
3610999 CCTTGACTCG
3611009 AACTTTGTAAAAATTACAATTTTGCCCCTA
1 AACTTTGTAAAAATTACAATTTTGCCCCTA
* * * *
3611039 AACTTTTTCATAATTACACTTTTGCCCC
1 AACTTTGTAAAAATTACAATTTTGCCCC
3611067 AAAGCTCGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTGTAAAAATTACAATTTTGCCCCTA
Found at i:3612847 original size:40 final size:40
Alignment explanation
Indices: 3612713--3612866 Score: 186
Period size: 40 Copynumber: 3.8 Consensus size: 40
3612703 AGCGGCATTT
**
3612713 TTAGCGGCGTTTGGATAAAAAACGCCGCTAAAAATCGAGCA
1 TTAGCGGCGTTT-TTTAAAAAACGCCGCTAAAAATCGAGCA
* * * *
3612754 TTAGCGGCGCTTTTCAAAAAATGCCGCTAAAGATCGAGCA
1 TTAGCGGCGTTTTTTAAAAAACGCCGCTAAAAATCGAGCA
*
3612794 TTAGCGGCG-TTTTTAAAAAAGCGCCGCTAAAAAT-AAGCA
1 TTAGCGGCGTTTTTTAAAAAA-CGCCGCTAAAAATCGAGCA
* *
3612833 TTAGCGGCGTTTTTTAGAAAAGCGCCGCAAAAAA
1 TTAGCGGCGTTTTTTA-AAAAACGCCGCTAAAAA
3612867 CCTAAGCCCA
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 23 0.23
40 60 0.61
41 15 0.15
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGTTTTTTAAAAAACGCCGCTAAAAATCGAGCA
Found at i:3612962 original size:41 final size:41
Alignment explanation
Indices: 3612905--3613053 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
3612895 CTTTCGAGGA
* *
3612905 TTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGTTCAGAGC
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
**
3612946 TTTAGCGTTGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
* * *
3612987 TTTAGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTC-GGGA
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
*
3613027 TTTAACGGCGTTTTT-GAAAAGCGCCGC
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGC
3613054 AAAAACATTT
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.12
40 16 0.16
41 70 0.71
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC
Found at i:3613397 original size:14 final size:14
Alignment explanation
Indices: 3613387--3613423 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
3613377 GGGTTTAATA
*
3613387 TATATGGTTTAGGG
1 TATATGGTTTAGTG
3613401 TATATGGTTTAGTG
1 TATATGGTTTAGTG
3613415 TATATGGTT
1 TATATGGTT
3613424 AATTTAGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.49
Consensus pattern (14 bp):
TATATGGTTTAGTG
Found at i:3613500 original size:14 final size:15
Alignment explanation
Indices: 3613472--3613504 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
3613462 AAGGTTTATA
3613472 GATTATGGAATTAGG
1 GATTATGGAATTAGG
3613487 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
3613501 GATT
1 GATT
3613505 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:3613665 original size:7 final size:7
Alignment explanation
Indices: 3613653--3613714 Score: 79
Period size: 7 Copynumber: 8.9 Consensus size: 7
3613643 TAATGTTTAT
3613653 GGGTTAG
1 GGGTTAG
*
3613660 GGGTTAT
1 GGGTTAG
3613667 GGGTTAG
1 GGGTTAG
*
3613674 GGGTTGG
1 GGGTTAG
3613681 GGGTTAG
1 GGGTTAG
**
3613688 TAGTTAG
1 GGGTTAG
3613695 GGGTTAG
1 GGGTTAG
3613702 GGGTTAG
1 GGGTTAG
*
3613709 AGGTTA
1 GGGTTA
3613715 AAAGTTAGTG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
GGGTTAG
Found at i:3617842 original size:100 final size:100
Alignment explanation
Indices: 3617669--3618292 Score: 1248
Period size: 100 Copynumber: 6.2 Consensus size: 100
3617659 GATGTAATGG
3617669 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
1 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
3617734 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
66 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
3617769 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
1 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
3617834 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
66 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
3617869 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
1 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
3617934 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
66 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
3617969 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
1 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
3618034 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
66 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
3618069 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
1 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
3618134 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
66 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
3618169 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
1 GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
3618234 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
66 TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
3618269 GACTTGCGAGTGCATGATGTTAAA
1 GACTTGCGAGTGCATGATGTTAAA
3618293 TTTTTTTGAT
Statistics
Matches: 524, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 524 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.33
Consensus pattern (100 bp):
GACTTGCGAGTGCATGATGTTAAAATTTAGTCACAGATTGACAATTATACTAACATCAATTGAAT
TAAAATTTAGTCGGCATATATGAATAAAAAAGTTT
Found at i:3619469 original size:43 final size:43
Alignment explanation
Indices: 3619399--3619516 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
3619389 CCAAATGTCA
* * * * *
3619399 TTAGTGGCGTTTTTGGCAGAAGCGCCGCAAAAAGTCAT-GATCT
1 TTAGCGGCGTTTATGGGAAAAGCGCCGCAAAAAGTCATAG-CCT
* * * *
3619442 TTAGCGGCGTTTATGGGAAAAGTGCCGCTAAAGGTCCTAGCCT
1 TTAGCGGCGTTTATGGGAAAAGCGCCGCAAAAAGTCATAGCCT
*
3619485 TTAGCGGCGTTTGTGGGAAAAGCGCCGCAAAA
1 TTAGCGGCGTTTATGGGAAAAGCGCCGCAAAA
3619517 GTTAGCGACG
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
43 61 0.98
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (43 bp):
TTAGCGGCGTTTATGGGAAAAGCGCCGCAAAAAGTCATAGCCT
Found at i:3624554 original size:154 final size:152
Alignment explanation
Indices: 3624337--3625156 Score: 1124
Period size: 154 Copynumber: 5.3 Consensus size: 152
3624327 ATTTAGTGTG
* *
3624337 TTTTTATTGAAAGTAATAAAATTC-GGTAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTT
1 TTTTT-TTGAAAGTAATAAAA-TCGGGAAAAAAATACGAACAAAGGGCCGAAATAA-GATTTTTT
3624401 TTAAAATTTATTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
63 TTAAAATTTATTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
3624466 AATAATAAAATTAGAAAATAATATA
128 AATAATAAAATTAGAAAATAATATA
* * * *
3624491 TTTTTATTGAAAGTAATAAAATCTGGGGAAAAAATACGAACAAAGGGCCGAAACAAGAATTTTTA
1 TTTTT-TTGAAAGTAATAAAATC-GGGAAAAAAATACGAACAAAGGGCCGAAATAAGATTTTTTT
* * *
3624556 AAAAAATTATTTTAAAAACACACTAAATGAATACATTTGAAACATAATGTACTAAAATAATGTAA
64 TAAAATTTA-TTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
*
3624621 AATAATAAAATTAGAAAATAGTATA
128 AATAATAAAATTAGAAAATAATATA
** * *
3624646 -TTTTTT-AAAGTAATAAAATCCGGGAAAAAAAATACGAACAAAGGG-AAAAATAATAGTTTTTT
1 TTTTTTTGAAAGTAATAAAAT-CGGG-AAAAAAATACGAACAAAGGGCCGAAATAAGATTTTTTT
* *
3624708 T-AAATTTATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAA
64 TAAAATTTATTT-AAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
3624772 AATAATAAAA-TACGAAAATAATATA
128 AATAATAAAATTA-GAAAATAATATA
* *
3624797 TTTTTATTGAAAGTAATAAAATCCGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTGTTTT
1 TTTTT-TTGAAAGTAATAAAATCGGGAAAAAAATACGAACAAAGGGCCGAAATAA-GATT-TTTT
* **
3624862 TTTAAATTTAAATAAAAGACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTA
63 TTAAAATTTATTTAAAA-ACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTA
*
3624927 AAATAATAAAATTAGAAAATAGTATA
127 AAATAATAAAATTAGAAAATAATATA
* *
3624953 -TTTTTTAAAAGTAATAAAATCCGAGGAAAAAAATACGAACAAAGGGCTGAAATAAGATTTTTTT
1 TTTTTTTGAAAGTAATAAAAT-CG-GGAAAAAAATACGAACAAAGGGCCGAAATAAGATTTTTTT
* *
3625017 TAAAATTTATTTAAAAAACACACTGAATTAATACATTTCAAACATAATGTACTAAAATAATGTAA
64 TAAAATTTATTT-AAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
3625082 AATAAT-AAATTA-AAAA-AATAGTA
128 AATAATAAAATTAGAAAATAATA-TA
* * *
3625105 TATTTTTT-AAAGTAATAAAATC-CGAAAAAAATACGAACAAATGGCTGAAATA
1 T-TTTTTTGAAAGTAATAAAATCGGGAAAAAAATACGAACAAAGGGCCGAAATA
3625157 CGAATATGTT
Statistics
Matches: 599, Mismatches: 45, Indels: 48
0.87 0.07 0.07
Matches are distributed among these distances:
150 33 0.06
151 79 0.13
152 58 0.10
153 54 0.09
154 139 0.23
155 129 0.22
156 105 0.18
157 2 0.00
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.29
Consensus pattern (152 bp):
TTTTTTTGAAAGTAATAAAATCGGGAAAAAAATACGAACAAAGGGCCGAAATAAGATTTTTTTTA
AAATTTATTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAAT
AATAAAATTAGAAAATAATATA
Found at i:3630713 original size:162 final size:163
Alignment explanation
Indices: 3630531--3630856 Score: 645
Period size: 162 Copynumber: 2.0 Consensus size: 163
3630521 TTAAAAATAA
3630531 ATAAATAAAAGTGTTTATTCTTAAATAATAATGCAACTAGACAAACAAATACCTCTAAATAATAG
1 ATAAATAAAAGTGTTTATTCTTAAATAATAATGCAACTAGACAAACAAATACCTCTAAATAATAG
3630596 TAAAATTAATAATAAAACAAATGTTATATACTATACAAATAATAATAATAAAATACTAACAATAT
66 TAAAATTAATAATAAAACAAATGTTATATACTATACAAATAATAATAATAAAATACTAACAATAT
3630661 TATAGTGAAATGATAACAAAACAATAGAAAAAC
131 TATAGTGAAATGATAACAAAACAATAGAAAAAC
3630694 ATAAATAAAA-TGTTTATTCTTAAATAATAATGCAACTAGACAAACAAATACCTCTAAATAATAG
1 ATAAATAAAAGTGTTTATTCTTAAATAATAATGCAACTAGACAAACAAATACCTCTAAATAATAG
3630758 TAAAATTAATAATAAAACAAATGTTATATACTATACAAATAATAATAATAAAATACTAACAATAT
66 TAAAATTAATAATAAAACAAATGTTATATACTATACAAATAATAATAATAAAATACTAACAATAT
3630823 TATAGTGAAATGATAACAAAACAATAGAAAAAC
131 TATAGTGAAATGATAACAAAACAATAGAAAAAC
3630856 A
1 A
3630857 ACAACAAAAC
Statistics
Matches: 163, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
162 153 0.94
163 10 0.06
ACGTcount: A:0.57, C:0.10, G:0.06, T:0.28
Consensus pattern (163 bp):
ATAAATAAAAGTGTTTATTCTTAAATAATAATGCAACTAGACAAACAAATACCTCTAAATAATAG
TAAAATTAATAATAAAACAAATGTTATATACTATACAAATAATAATAATAAAATACTAACAATAT
TATAGTGAAATGATAACAAAACAATAGAAAAAC
Found at i:3632662 original size:21 final size:21
Alignment explanation
Indices: 3632638--3632692 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
3632628 AGGTAAGAAA
* *
3632638 ATAAAAATATATAAAATTATC
1 ATAAAAATAAATAAAATGATC
*
3632659 ATAAAAATAAATAATATGATC
1 ATAAAAATAAATAAAATGATC
*
3632680 ATAAATATAAATA
1 ATAAAAATAAATA
3632693 TTATTTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (21 bp):
ATAAAAATAAATAAAATGATC
Found at i:3646289 original size:28 final size:28
Alignment explanation
Indices: 3646249--3646305 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
3646239 AACTTGTATG
3646249 TGTGTAAATATGTATTAGTTGAATAAGT
1 TGTGTAAATATGTATTAGTTGAATAAGT
3646277 TGTGTAAATATGTATTAGTTGAATAAGT
1 TGTGTAAATATGTATTAGTTGAATAAGT
3646305 T
1 T
3646306 TAAAATATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (28 bp):
TGTGTAAATATGTATTAGTTGAATAAGT
Found at i:3647762 original size:31 final size:31
Alignment explanation
Indices: 3647631--3647787 Score: 129
Period size: 31 Copynumber: 5.1 Consensus size: 31
3647621 AACAATATAC
* *
3647631 ATATTCATATACAAATCAAATTCGACAATGA
1 ATATTCATATACAAATCAAATTCGGCAATGT
* * * *
3647662 ATATTGATATACCAAGC-AATTAGGCAATGT
1 ATATTCATATACAAATCAAATTCGGCAATGT
** * * *
3647692 ATAACCATATACAAATCAAGTTTGGCAATAT
1 ATATTCATATACAAATCAAATTCGGCAATGT
* *
3647723 ATAATCATATACAAATCAAATTCGGC-ATCCT
1 ATATTCATATACAAATCAAATTCGGCAAT-GT
* * * **
3647754 ATATTCATAAACAATTCAATTTCGAAAATGT
1 ATATTCATATACAAATCAAATTCGGCAATGT
3647785 ATA
1 ATA
3647788 ACCATGTACA
Statistics
Matches: 98, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
30 24 0.24
31 72 0.73
32 2 0.02
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.31
Consensus pattern (31 bp):
ATATTCATATACAAATCAAATTCGGCAATGT
Found at i:3653139 original size:17 final size:17
Alignment explanation
Indices: 3653114--3653153 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
3653104 TATTCTCTCA
*
3653114 TCTTGTGTCTTATATTT
1 TCTTTTGTCTTATATTT
* *
3653131 TCTTTTGTCTTTTGTTT
1 TCTTTTGTCTTATATTT
3653148 TCTTTT
1 TCTTTT
3653154 TACTATAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.12, G:0.10, T:0.72
Consensus pattern (17 bp):
TCTTTTGTCTTATATTT
Found at i:3655153 original size:24 final size:23
Alignment explanation
Indices: 3655110--3655154 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
3655100 ATTTAATTTT
*
3655110 AAAAAGTTTAATGATTAAATAAA
1 AAAAAGTTTAATGATAAAATAAA
3655133 AAAAAGTTTAATGATCAAAATA
1 AAAAAGTTTAATGAT-AAAATA
3655155 GAACGAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (23 bp):
AAAAAGTTTAATGATAAAATAAA
Found at i:3697983 original size:69 final size:69
Alignment explanation
Indices: 3697872--3698006 Score: 261
Period size: 69 Copynumber: 2.0 Consensus size: 69
3697862 GAAGCCTAAT
3697872 TTTGAATTTACGAGTCACCTGAATAGGGAAGAGTATCATCTGACAGCATTAGGTGGAAATATACA
1 TTTGAATTTACGAGTCACCTGAATAGGGAAGAGTATCATCTGACAGCATTAGGTGGAAATATACA
3697937 AAAA
66 AAAA
*
3697941 TTTGAATTTAGGAGTCACCTGAATAGGGAAGAGTATCATCTGACAGCATTAGGTGGAAATATACA
1 TTTGAATTTACGAGTCACCTGAATAGGGAAGAGTATCATCTGACAGCATTAGGTGGAAATATACA
3698006 A
66 A
3698007 GGTCAAATCG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.27
Consensus pattern (69 bp):
TTTGAATTTACGAGTCACCTGAATAGGGAAGAGTATCATCTGACAGCATTAGGTGGAAATATACA
AAAA
Done.