genome.fa.s10.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  115  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38945052--38945133	40	2.0	40	95	0	146	43	7	18	30	1.77
38947387--38947437	25	2.2	22	83	16	59	64	3	7	23	1.37
38948376--38948479	30	3.4	29	73	19	95	55	5	27	10	1.56
38951028--38951070	20	2.1	20	82	4	50	23	16	6	53	1.67
38957063--38957318	39	6.5	39	86	0	332	21	33	15	29	1.94
38957214--38957281	20	3.5	20	70	11	68	20	35	17	26	1.95
38957237--38957300	19	3.3	19	67	16	51	17	35	15	31	1.91
38972428--38972453	11	2.4	11	100	0	52	61	7	7	23	1.49
38972929--38972963	17	2.0	17	88	5	52	77	0	5	17	0.96
38974087--38974149	20	3.3	19	77	4	56	63	1	3	31	1.19
38974496--38974553	24	2.4	24	97	0	107	17	25	24	32	1.96
38975070--38975132	24	2.5	25	80	12	58	34	3	1	60	1.22
38975537--38975608	32	2.2	32	80	12	83	45	4	0	50	1.21
38975582--38975636	25	2.2	25	83	3	67	43	1	0	54	1.10
38980884--38980920	18	2.1	18	94	0	65	27	8	8	56	1.56
38987130--38987430	22	13.7	22	81	0	332	30	11	17	40	1.85
38987127--38987430	44	6.9	44	86	0	419	30	11	17	40	1.85
38995201--38995443	22	11.0	22	80	3	247	29	9	18	42	1.82
38995201--38995443	44	5.5	44	86	3	328	29	9	18	42	1.82
38995297--38995434	11	12.5	11	65	16	63	28	7	20	42	1.80
39006775--39006841	20	3.3	20	76	0	71	13	31	19	35	1.90
39007895--39007941	24	2.0	24	95	0	85	31	8	14	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39009883--39009938	19	2.8	21	76	15	64	37	5	30	26	1.79
39011034--39011093	30	2.0	30	96	0	111	26	15	11	46	1.79
39011968--39012009	22	1.9	22	90	0	66	35	19	14	30	1.91
39016092--39016159	30	2.2	31	84	2	84	45	5	20	27	1.74
39019596--39019638	23	1.9	22	85	4	59	18	39	2	39	1.64
39021397--39021424	14	2.0	14	100	0	56	35	7	0	57	1.26
39029050--39029077	14	2.0	14	100	0	56	35	7	0	57	1.26
39037565--39037713	43	3.5	41	74	10	131	27	12	24	36	1.91
39037590--39037705	43	2.7	43	79	1	135	26	13	25	34	1.93
39043072--39043138	35	1.9	35	93	0	116	34	5	13	46	1.68
39045382--39045412	15	2.0	16	93	6	55	61	6	25	6	1.45
39046753--39046869	42	2.8	41	85	5	164	28	18	19	33	1.96
39059402--39059508	25	4.3	25	85	2	144	28	27	21	23	1.99
39059400--39059508	50	2.2	50	89	0	182	27	27	21	23	1.99
39087476--39087513	20	1.9	20	89	10	60	42	0	7	50	1.31
39089221--39089259	16	2.4	16	78	0	51	41	5	2	51	1.38
39094288--39094401	34	3.4	34	70	4	104	32	16	12	38	1.86
39095721--39095858	50	2.8	50	82	0	150	26	23	28	21	1.99
39098823--39099123	27	11.2	27	86	2	363	41	22	17	17	1.90
39111463--39111515	26	2.0	26	88	0	79	33	16	28	20	1.95
39111585--39111799	32	6.7	32	80	9	206	38	21	20	20	1.93
39111585--39111866	96	3.0	96	80	7	256	39	20	19	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39119526--39119577	17	3.2	16	81	10	61	46	15	7	30	1.74
39119532--39119586	17	3.2	17	87	5	76	45	14	7	32	1.72
39119549--39119594	17	2.7	17	89	0	74	43	13	4	39	1.63
39120262--39120310	18	2.7	18	80	0	53	51	20	2	26	1.59
39120565--39120693	31	4.0	31	81	9	127	48	14	5	31	1.67
39123767--39123811	21	2.1	21	100	0	90	40	0	17	42	1.50
39124117--39124198	42	2.0	41	87	2	119	40	10	25	23	1.87
39130809--39130858	23	2.1	24	82	10	59	54	6	2	38	1.37
39133727--39133772	23	1.9	25	86	8	69	36	6	13	43	1.69
39135464--39136014	27	20.4	27	83	1	485	41	21	17	18	1.90
39135463--39136015	54	10.2	54	84	2	556	41	21	17	18	1.90
39136378--39136460	28	3.0	28	96	0	148	24	24	22	28	1.99
39143961--39144066	30	3.6	29	81	10	106	26	25	10	37	1.88
39144051--39144124	30	2.5	30	84	0	103	21	25	10	41	1.85
39146967--39147312	147	2.4	147	90	1	514	26	24	15	33	1.95
39147004--39147210	49	4.2	49	69	18	144	25	26	13	34	1.92
39146967--39147229	49	5.4	49	70	14	141	25	24	15	33	1.95
39147031--39147377	147	2.4	147	84	2	385	26	24	15	33	1.95
39150016--39150135	57	2.1	58	84	4	154	29	17	5	47	1.71
39153914--39153979	30	2.2	30	86	5	89	43	13	0	42	1.44
39155009--39155053	22	2.1	22	87	4	65	46	0	0	53	1.00
39159919--39159953	18	1.9	18	88	0	52	54	5	0	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39180386--39180442	28	2.0	28	100	0	114	43	7	7	42	1.58
39181002--39181052	4	12.8	4	100	0	102	50	23	0	25	1.49
39198471--39198637	67	2.5	67	80	0	190	26	22	17	34	1.96
39198716--39198742	14	1.9	14	100	0	54	14	14	14	55	1.70
39203973--39204055	43	1.9	43	85	0	112	16	14	27	40	1.88
39204113--39204196	29	2.8	28	79	19	98	30	13	23	32	1.93
39204110--39204316	61	3.4	60	82	5	186	33	14	21	30	1.92
39216353--39216460	30	3.7	28	82	9	126	25	25	27	21	1.99
39216385--39216468	28	2.9	29	81	10	100	29	22	26	21	1.99
39216581--39216656	26	2.9	27	78	3	93	40	23	21	14	1.90
39216840--39217033	27	7.2	26	82	9	194	24	13	16	45	1.83
39216840--39217033	54	3.6	53	82	9	241	24	13	16	45	1.83
39216840--39217033	81	2.4	81	86	3	266	24	13	16	45	1.83
39220784--39220958	63	2.8	63	83	5	210	29	25	17	27	1.98
39222477--39222525	2	24.5	2	100	0	98	48	0	0	51	1.00
39240389--39240436	18	2.7	18	78	12	62	22	0	8	68	1.16
39240397--39240453	9	6.9	8	82	11	53	29	0	5	64	1.15
39246758--39246792	17	2.1	17	88	0	52	42	2	2	51	1.31
39252714--39252738	13	1.9	13	100	0	50	72	12	0	16	1.13
39256692--39256722	15	2.1	15	93	0	53	35	6	35	22	1.80
39259823--39259908	43	2.0	43	83	0	109	25	19	1	53	1.52
39259866--39259903	18	2.2	17	86	9	51	15	26	0	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39262528--39262558	11	2.8	11	100	0	62	74	6	9	9	1.23
39275357--39275404	21	2.3	21	96	0	87	31	22	22	22	1.99
39287071--39287124	27	2.0	28	88	3	83	20	22	27	29	1.98
39287103--39287227	33	3.5	33	73	21	117	22	18	25	33	1.96
39287136--39287272	42	3.5	42	72	17	157	23	18	25	32	1.97
39287099--39287272	75	2.3	75	94	0	303	23	18	25	31	1.98
39288955--39288980	13	2.0	13	100	0	52	53	7	15	23	1.67
39289159--39289335	42	4.2	42	98	1	336	40	14	16	28	1.88
39299259--39299365	41	2.6	42	86	1	135	20	24	34	20	1.96
39303196--39303233	18	2.1	18	90	0	58	21	31	5	42	1.75
39303784--39304048	130	2.0	130	97	0	503	24	21	20	33	1.97
39309894--39309929	18	1.9	19	88	5	56	75	19	0	5	1.00
39314124--39314209	26	3.3	27	76	14	72	29	3	4	62	1.31
39314140--39314226	26	3.4	25	79	6	84	33	4	4	57	1.40
39314272--39314317	14	3.1	15	76	14	51	26	0	2	71	0.97
39314276--39314369	25	4.0	24	72	12	86	25	0	5	69	1.10
39318925--39319022	41	2.4	41	87	5	153	26	24	23	25	2.00
39321262--39321297	11	3.3	11	88	0	54	41	16	5	36	1.72
39322360--39322499	51	2.7	51	76	10	126	38	15	6	40	1.72
39325303--39325329	2	13.5	2	100	0	54	51	0	48	0	1.00
39334934--39335005	25	2.8	25	85	6	83	22	25	20	31	1.98
39334948--39335025	25	3.2	25	87	5	97	21	25	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39334964--39335043	25	3.2	25	82	7	83	23	26	21	28	1.99
39337238--39337267	2	15.0	2	92	0	51	53	0	46	0	1.00
39352255--39352325	35	2.0	35	97	0	133	33	11	14	40	1.81
39352696--39352737	20	2.1	20	90	0	66	47	21	23	7	1.75
39357427--39357588	83	2.0	82	92	1	270	38	11	22	27	1.89
39357635--39357740	50	2.1	50	85	3	142	24	21	32	21	1.98
39358004--39358042	20	2.0	20	90	10	62	56	5	23	15	1.59
39359942--39359996	17	3.2	17	84	0	65	14	20	43	21	1.87
39360412--39360673	130	2.0	134	88	4	397	50	9	11	28	1.70
39365873--39365899	14	1.9	14	100	0	54	37	22	25	14	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136