Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 118 of 136
Found at i:40088619 original size:21 final size:20
Alignment explanation
Indices: 40088581--40088631 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
40088571 TGTGTTCTAC
*
40088581 CGATAGAAGTCCAGGTTGTAT
1 CGATAGAA-CCCAGGTTGTAT
*
40088602 CGGTAGAACCCAGAGTTGTAT
1 CGATAGAACCCAG-GTTGTAT
*
40088623 TGATAGAAC
1 CGATAGAAC
40088632 TCCCAGTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (20 bp):
CGATAGAACCCAGGTTGTAT
Found at i:40089306 original size:10 final size:10
Alignment explanation
Indices: 40089291--40089319 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
40089281 CAATACTTAA
40089291 ACATTTGAAG
1 ACATTTGAAG
40089301 ACATTTGAAG
1 ACATTTGAAG
40089311 ACATTTGAA
1 ACATTTGAA
40089320 ATAAAAGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (10 bp):
ACATTTGAAG
Found at i:40092704 original size:40 final size:40
Alignment explanation
Indices: 40092620--40092825 Score: 288
Period size: 40 Copynumber: 5.1 Consensus size: 40
40092610 CATAAGTGTT
* *
40092620 ATTCAGGGGTACCAAAGTACAAATAGGGGCACGCATATGCA
1 ATTCAGGGGTACCAAAGTAC-AATAGGGGCACGTATGTGCA
* *
40092661 ATTCAGGGGTACCAAAGTACAATAGGGGCACGCATGTGTA
1 ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
* *
40092701 ATTCAGGGGTACCGAAA-TACAACAAGGGCACGTATGTGCA
1 ATTCAGGGGTACC-AAAGTACAATAGGGGCACGTATGTGCA
* *
40092741 ATTCAGGGGTATCGAAGTACAATAGGGGCACGTATGTGCA
1 ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
* * *
40092781 ATTTAGGGGTACCAAAGTACAACAGGGGCATGTATGTGCA
1 ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
40092821 ATTCA
1 ATTCA
40092826 CGTATAATTA
Statistics
Matches: 147, Mismatches: 16, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
39 2 0.01
40 122 0.83
41 23 0.16
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.20
Consensus pattern (40 bp):
ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
Found at i:40092782 original size:19 final size:20
Alignment explanation
Indices: 40092726--40092822 Score: 56
Period size: 19 Copynumber: 4.8 Consensus size: 20
40092716 AATACAACAA
40092726 GGGCACGTATGTGCAATTCAG
1 GGGCACGTATGTGCAA-TCAG
* * *
40092747 GGGTATCG-AAGTACAAT-AG
1 GGGCA-CGTATGTGCAATCAG
*
40092766 GGGCACGTATGTGCAATTTAG
1 GGGCACGTATGTGCAA-TCAG
* ** * *
40092787 GGGTACCAAAGTACAA-CAG
1 GGGCACGTATGTGCAATCAG
*
40092806 GGGCATGTATGTGCAAT
1 GGGCACGTATGTGCAAT
40092823 TCACGTATAA
Statistics
Matches: 53, Mismatches: 18, Indels: 11
0.65 0.22 0.13
Matches are distributed among these distances:
18 2 0.04
19 24 0.45
20 2 0.04
21 23 0.43
22 2 0.04
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (20 bp):
GGGCACGTATGTGCAATCAG
Found at i:40108794 original size:38 final size:38
Alignment explanation
Indices: 40108706--40108822 Score: 112
Period size: 38 Copynumber: 3.1 Consensus size: 38
40108696 AACCTTTATT
* * *
40108706 ACACTGGCAATAAGCCTGCTAGGCACTAAGCCTGAATA
1 ACACTGGCACTAATCCTGCTAGGCACAAAGCCTGAATA
* * *
40108744 ACACTAGTACTAATCCTGCTAGACACAAAGCCTGAATA
1 ACACTGGCACTAATCCTGCTAGGCACAAAGCCTGAATA
* * * *
40108782 AC-GTCGGCACTAAGT-CTACTAGGCACAAAGCTTGAAAA
1 ACACT-GGCACTAA-TCCTGCTAGGCACAAAGCCTGAATA
40108820 ACA
1 ACA
40108823 GTATAGCTCA
Statistics
Matches: 63, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
37 1 0.02
38 61 0.97
39 1 0.02
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.19
Consensus pattern (38 bp):
ACACTGGCACTAATCCTGCTAGGCACAAAGCCTGAATA
Found at i:40115666 original size:38 final size:37
Alignment explanation
Indices: 40115608--40115761 Score: 155
Period size: 38 Copynumber: 4.1 Consensus size: 37
40115598 AACCTTTATT
* * * * * *
40115608 ACACCAACAATAAGCTTGCTAGGCACTAAGCTTGAATA
1 ACACCGACACTAAGC-TACTAGGCACAAAGCCTAAATA
*
40115646 ACACCGACACTAAGACTGCTAGGCACAAAGCCTAAATA
1 ACACCGACACTAAG-CTACTAGGCACAAAGCCTAAATA
* * **
40115684 ACACTGACACTAAGCCTATTAGGCACAAAGCCTGGATA
1 ACACCGACACTAAG-CTACTAGGCACAAAGCCTAAATA
* *
40115722 ACACGGGCACTAAGCTTACTAGGCACAAAGCCTAAATA
1 ACACCGACACTAAGC-TACTAGGCACAAAGCCTAAATA
40115760 AC
1 AC
40115762 GGTATAACTC
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 96 0.98
39 1 0.01
ACGTcount: A:0.40, C:0.27, G:0.17, T:0.17
Consensus pattern (37 bp):
ACACCGACACTAAGCTACTAGGCACAAAGCCTAAATA
Found at i:40118961 original size:10 final size:10
Alignment explanation
Indices: 40118943--40118972 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
40118933 AATCTCAATA
*
40118943 TAAACAAAAG
1 TAAAGAAAAG
40118953 TAAAGAAAAG
1 TAAAGAAAAG
40118963 TAAAGAAAAG
1 TAAAGAAAAG
40118973 AAACAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.70, C:0.03, G:0.17, T:0.10
Consensus pattern (10 bp):
TAAAGAAAAG
Found at i:40124725 original size:3 final size:3
Alignment explanation
Indices: 40124717--40124770 Score: 54
Period size: 3 Copynumber: 17.0 Consensus size: 3
40124707 TGTTAAATTG
* **
40124717 TTA TTA TTA CTGTA TTA TTA TTA GTA TTTA TTA TTA TTA TTA TGG TTA
1 TTA TTA TTA -T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
40124765 TTA TTA
1 TTA TTA
40124771 CCATTTTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 36 0.86
4 4 0.10
5 2 0.05
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:40124940 original size:18 final size:18
Alignment explanation
Indices: 40124903--40124936 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
40124893 TACATATATT
*
40124903 TACATTTTATAATATTTA
1 TACATTTTACAATATTTA
40124921 TACATTTT-CAATATTT
1 TACATTTTACAATATTT
40124937 TATAATCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (18 bp):
TACATTTTACAATATTTA
Found at i:40136486 original size:13 final size:13
Alignment explanation
Indices: 40136468--40136494 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
40136458 GGGTGGCAAC
40136468 CCTAGTAGGAAAA
1 CCTAGTAGGAAAA
40136481 CCTAGTAGGAAAA
1 CCTAGTAGGAAAA
40136494 C
1 C
40136495 TAGGGTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (13 bp):
CCTAGTAGGAAAA
Found at i:40140609 original size:22 final size:22
Alignment explanation
Indices: 40140560--40140609 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
40140550 AGTTGAACTG
* *
40140560 CCAGTAAATTACAAACAAGCTA
1 CCAGTAAATTACAAACAAACCA
* * *
40140582 CTAGTAAATTGCAAATAAACCA
1 CCAGTAAATTACAAACAAACCA
40140604 CCAGTA
1 CCAGTA
40140610 CTCCACGAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.48, C:0.22, G:0.10, T:0.20
Consensus pattern (22 bp):
CCAGTAAATTACAAACAAACCA
Found at i:40140828 original size:37 final size:38
Alignment explanation
Indices: 40140773--40140846 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 38
40140763 GATTTCAATA
*
40140773 TAGTGGCATGCTTAGCATGCATTAAGT-AAAATAGTAT
1 TAGTGACATGCTTAGCATGCATTAAGTGAAAATAGTAT
* *
40140810 TAGTGACATG-TTATGCATGCATTCAGTGAGAATAGTA
1 TAGTGACATGCTTA-GCATGCATTAAGTGAAAATAGTA
40140847 ACATTTAGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 3 0.09
37 21 0.66
38 8 0.25
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (38 bp):
TAGTGACATGCTTAGCATGCATTAAGTGAAAATAGTAT
Found at i:40143777 original size:25 final size:24
Alignment explanation
Indices: 40143716--40143796 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 24
40143706 GACACACCAT
* *
40143716 AGCTCGTATGATCTTACCGATTTT
1 AGCTCGTATGAGCTTACCGATTTC
40143740 AGCTCGTGA-GAGCTTACCGATTCTC
1 AGCTCGT-ATGAGCTTACCGATT-TC
* *
40143765 AGCTCATATGAGCTTACTGATTTCC
1 AGCTCGTATGAGCTTACCGATTT-C
40143790 AGCTCGT
1 AGCTCGT
40143797 GAGAGCATAC
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
24 21 0.44
25 27 0.56
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (24 bp):
AGCTCGTATGAGCTTACCGATTTC
Found at i:40143818 original size:25 final size:24
Alignment explanation
Indices: 40143715--40143819 Score: 88
Period size: 25 Copynumber: 4.2 Consensus size: 24
40143705 CGACACACCA
* * *
40143715 TAGCTCGT-ATGATCTTACCGATTT
1 TAGCTCGTGA-GAGCTTACTGATTC
*
40143739 TAGCTCGTGAGAGCTTACCGATTC
1 TAGCTCGTGAGAGCTTACTGATTC
*
40143763 TCAGCTCAT-ATGAGCTTACTGATTTC
1 T-AGCTCGTGA-GAGCTTACTGA-TTC
* *
40143789 CAGCTCGTGAGAGCATACTGATTC
1 TAGCTCGTGAGAGCTTACTGATTC
40143813 ATAGCTC
1 -TAGCTC
40143820 ATATAAGCAT
Statistics
Matches: 67, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
24 25 0.37
25 38 0.57
26 4 0.06
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (24 bp):
TAGCTCGTGAGAGCTTACTGATTC
Found at i:40143819 original size:50 final size:49
Alignment explanation
Indices: 40143713--40143823 Score: 143
Period size: 50 Copynumber: 2.2 Consensus size: 49
40143703 GCCGACACAC
* * * *
40143713 CATAGCTCGTATGATCTTACCGATTTTAGCTCGTGAGAGCTTACCGATT
1 CATAGCTCATATGAGCTTACCGATTTCAGCTCGTGAGAGCATACCGATT
* *
40143762 C-TCAGCTCATATGAGCTTACTGATTTCCAGCTCGTGAGAGCATACTGATT
1 CAT-AGCTCATATGAGCTTACCGATTT-CAGCTCGTGAGAGCATACCGATT
40143812 CATAGCTCATAT
1 CATAGCTCATAT
40143824 AAGCATACAT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 1 0.02
49 21 0.40
50 30 0.57
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (49 bp):
CATAGCTCATATGAGCTTACCGATTTCAGCTCGTGAGAGCATACCGATT
Found at i:40158077 original size:41 final size:41
Alignment explanation
Indices: 40158032--40158157 Score: 114
Period size: 41 Copynumber: 3.3 Consensus size: 41
40158022 CCCTTTTACT
40158032 AGGCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCC
1 AGGCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCC
****
40158073 AGGCCCGGCCCGGAGAAAAAATATGGGGCCT--G---------
1 AGGCCCGGCCCGG-CCCGAAATAT-GGGCCTAAGATTTTACCC
40158105 A-GCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCC
1 AGGCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCC
40158145 AGGCCCGGCCCGG
1 AGGCCCGGCCCGG
40158158 AGAAAAAATA
Statistics
Matches: 63, Mismatches: 8, Indels: 28
0.64 0.08 0.28
Matches are distributed among these distances:
29 6 0.10
30 6 0.10
31 12 0.19
32 1 0.02
40 1 0.02
41 25 0.40
42 6 0.10
43 6 0.10
ACGTcount: A:0.22, C:0.33, G:0.31, T:0.13
Consensus pattern (41 bp):
AGGCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCC
Found at i:40158079 original size:36 final size:36
Alignment explanation
Indices: 40158038--40158156 Score: 117
Period size: 36 Copynumber: 3.3 Consensus size: 36
40158028 TACTAGGCCC
40158038 GGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCA
1 GGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCA
*
40158074 GGCCCGGCCCGGAGAAAAAATATGGGGCCT--GA----GCCC-
1 GGCCCGGCCC---G---AAATAT-GGGCCTAAGATTTTACCCA
40158110 GGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCA
1 GGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCA
40158146 GGCCCGGCCCG
1 GGCCCGGCCCG
40158157 GAGAAAAAAT
Statistics
Matches: 67, Mismatches: 2, Indels: 28
0.69 0.02 0.29
Matches are distributed among these distances:
29 6 0.09
30 6 0.09
31 2 0.03
33 1 0.01
35 3 0.04
36 31 0.46
37 3 0.04
39 1 0.01
41 2 0.03
42 6 0.09
43 6 0.09
ACGTcount: A:0.23, C:0.33, G:0.30, T:0.14
Consensus pattern (36 bp):
GGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCA
Found at i:40158125 original size:72 final size:72
Alignment explanation
Indices: 40158034--40158192 Score: 318
Period size: 72 Copynumber: 2.2 Consensus size: 72
40158024 CTTTTACTAG
40158034 GCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCAGGCCCGGCCCGGAGAAAAAATATGG
1 GCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCAGGCCCGGCCCGGAGAAAAAATATGG
40158099 GGCCTGA
66 GGCCTGA
40158106 GCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCAGGCCCGGCCCGGAGAAAAAATATGG
1 GCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCAGGCCCGGCCCGGAGAAAAAATATGG
40158171 GGCCTGA
66 GGCCTGA
40158178 GCCCGGCCCGGCCCG
1 GCCCGGCCCGGCCCG
40158193 TTTTTAATTA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 87 1.00
ACGTcount: A:0.23, C:0.33, G:0.31, T:0.13
Consensus pattern (72 bp):
GCCCGGCCCGGCCCGAAATATGGGCCTAAGATTTTACCCAGGCCCGGCCCGGAGAAAAAATATGG
GGCCTGA
Found at i:40158186 original size:36 final size:36
Alignment explanation
Indices: 40158074--40158192 Score: 117
Period size: 36 Copynumber: 3.3 Consensus size: 36
40158064 ATTTTACCCA
40158074 GGCCCGGCCCGGAGAAAAAATATGGGGCCTGAGCCC
1 GGCCCGGCCCGGAGAAAAAATATGGGGCCTGAGCCC
*
40158110 GGCCCGGCCC---G---AAATAT-GGGCCTAAGATTTTACCC
1 GGCCCGGCCCGGAGAAAAAATATGGGGCCT--GA----GCCC
40158145 AGGCCCGGCCCGGAGAAAAAATATGGGGCCTGAGCCC
1 -GGCCCGGCCCGGAGAAAAAATATGGGGCCTGAGCCC
40158182 GGCCCGGCCCG
1 GGCCCGGCCCG
40158193 TTTTTAATTA
Statistics
Matches: 67, Mismatches: 2, Indels: 28
0.69 0.02 0.29
Matches are distributed among these distances:
29 6 0.09
30 6 0.09
31 2 0.03
33 1 0.01
35 3 0.04
36 31 0.46
37 3 0.04
39 1 0.01
41 2 0.03
42 6 0.09
43 6 0.09
ACGTcount: A:0.23, C:0.33, G:0.34, T:0.11
Consensus pattern (36 bp):
GGCCCGGCCCGGAGAAAAAATATGGGGCCTGAGCCC
Found at i:40158252 original size:22 final size:23
Alignment explanation
Indices: 40158199--40158254 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
40158189 CCCGTTTTTA
* * *
40158199 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
40158222 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
40158244 ATTAAAATTAA
1 ATTAAAATTAA
40158255 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:40158267 original size:16 final size:16
Alignment explanation
Indices: 40158230--40158269 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
40158220 TTAATAAAAT
* *
40158230 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
40158246 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
40158262 TAAAATTA
1 TAAAATTA
40158270 TATCTTACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:40160220 original size:29 final size:30
Alignment explanation
Indices: 40160164--40160221 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
40160154 TTGGTAAATG
* *
40160164 TACTTTCATAAAATGTCTATGTGGTACTTA
1 TACTTTCATAAAATGTCGATGTGATACTTA
40160194 TACTTT-A-AAAATGTTCGATGTGATACTT
1 TACTTTCATAAAATG-TCGATGTGATACTT
40160222 GAACTATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 13 0.52
30 6 0.24
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (30 bp):
TACTTTCATAAAATGTCGATGTGATACTTA
Found at i:40160915 original size:13 final size:12
Alignment explanation
Indices: 40160897--40160942 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
40160887 AGGTTCAATT
40160897 ATTTAATTTTTAA
1 ATTTAATTTTT-A
40160910 ATTTAA--TTTA
1 ATTTAATTTTTA
* *
40160920 GTTTAATTTTTT
1 ATTTAATTTTTA
40160932 ATTTAATTTTT
1 ATTTAATTTTT
40160943 CACATAATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
10 6 0.21
11 3 0.11
12 13 0.46
13 6 0.21
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
ATTTAATTTTTA
Found at i:40160935 original size:22 final size:23
Alignment explanation
Indices: 40160898--40160940 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
40160888 GGTTCAATTA
40160898 TTTAATTTTTAAATTTAATTTAG
1 TTTAATTTTTAAATTTAATTTAG
*
40160921 TTTAATTTTT-TATTTAATTT
1 TTTAATTTTTAAATTTAATTT
40160941 TTCACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTAATTTTTAAATTTAATTTAG
Found at i:40162016 original size:85 final size:84
Alignment explanation
Indices: 40161899--40162124 Score: 319
Period size: 85 Copynumber: 2.7 Consensus size: 84
40161889 ACGTCGCTAA
* * *
40161899 CTTTTGCGGCGCTTACAGAAAAAACGCCGCTAAAGATGATGTTCTTTAGCGGCGCTAAGAAAATA
1 CTTTAGCGGCGCTTA-GGAAAAAACGCCGCTAAAGATAATGTTCTTTAGCGGCGCTAAGAAAA-A
*
40161964 AACGCCGCTAAAGATCATGTT
64 AACGCCACTAAAGATCATGTT
* * *
40161985 CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAA
1 CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATAATGTTCTTTAGCGGCGCTAAGAAAAAAA
40162050 CGCCACTAAAGATCATGTT
66 CGCCACTAAAGATCATGTT
* * *
40162069 CTTTAGCGGCGCTTTGGAAGAAAACGCCTCTAAA-AGTAATGTTCTATAGCGGCGCT
1 CTTTAGCGGCGCTTAGGAA-AAAACGCCGCTAAAGA-TAATGTTCTTTAGCGGCGCT
40162125 TGTNNNNNNN
Statistics
Matches: 128, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
84 40 0.31
85 74 0.58
86 14 0.11
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (84 bp):
CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATAATGTTCTTTAGCGGCGCTAAGAAAAAAA
CGCCACTAAAGATCATGTT
Found at i:40162022 original size:42 final size:42
Alignment explanation
Indices: 40161899--40162125 Score: 321
Period size: 42 Copynumber: 5.3 Consensus size: 42
40161889 ACGTCGCTAA
* * *
40161899 CTTTTGCGGCGCTTACAGAAAAAACGCCGCTAAAGATGATGTT
1 CTTTAGCGGCGCTTA-GGAAAAAACGCCGCTAAAGATCATGTT
* *
40161942 CTTTAGCGGCGCTAAGAAAATAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTAGGAAA-AAACGCCGCTAAAGATCATGTT
40161985 CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTT
*
40162027 CTTTAGCGGCGCTTAGGAAAAAACGCCACTAAAGATCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTT
* * *
40162069 CTTTAGCGGCGCTTTGGAAGAAAACGCCTCTAAA-AGTAATGTT
1 CTTTAGCGGCGCTTAGGAA-AAAACGCCGCTAAAGA-TCATGTT
*
40162112 CTATAGCGGCGCTT
1 CTTTAGCGGCGCTT
40162126 GTNNNNNNNN
Statistics
Matches: 169, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
42 85 0.50
43 84 0.50
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (42 bp):
CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTT
Found at i:40168111 original size:22 final size:21
Alignment explanation
Indices: 40168064--40168116 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
40168054 GTTATTATAT
* * *
40168064 ATAAGTTATGGAAGTTATTAT
1 ATAAGTTATGCAAGTTATAAA
*
40168085 GTAAGTTATGCAAGATTATAAA
1 ATAAGTTATGCAAG-TTATAAA
40168107 ATAAGTTATG
1 ATAAGTTATG
40168117 TATTATGTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.38
Consensus pattern (21 bp):
ATAAGTTATGCAAGTTATAAA
Found at i:40168130 original size:8 final size:7
Alignment explanation
Indices: 40168112--40168157 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
40168102 ATAAAATAAG
40168112 TTATGTA
1 TTATGTA
40168119 TTATGTTA
1 TTATG-TA
40168127 TTATGTA
1 TTATGTA
40168134 TTATGTA
1 TTATGTA
*
40168141 --ATTTA
1 TTATGTA
40168146 TTATGTTA
1 TTATG-TA
40168154 TTAT
1 TTAT
40168158 ATATAAGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:40168132 original size:15 final size:15
Alignment explanation
Indices: 40168112--40168157 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
40168102 ATAAAATAAG
40168112 TTATGTATTATGTTA
1 TTATGTATTATGTTA
40168127 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
40168141 --ATTTATTATGTTA
1 TTATGTATTATGTTA
40168154 TTAT
1 TTAT
40168158 ATATAAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:40168192 original size:96 final size:96
Alignment explanation
Indices: 40168028--40168441 Score: 792
Period size: 96 Copynumber: 4.3 Consensus size: 96
40168018 NNNNNNNNNN
40168028 TTATTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATGGAAGTTATTATGTAAGTTA
1 TTATTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATGGAAGTTATTATGTAAGTTA
40168093 TGCAAGATTATAAAATAAGTTATGTATTATG
66 TGCAAGATTATAAAATAAGTTATGTATTATG
40168124 TTATTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATGGAAGTTATTATGTAAGTTA
1 TTATTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATGGAAGTTATTATGTAAGTTA
40168189 TGCAAGATTATAAAATAAGTTATGTATTATG
66 TGCAAGATTATAAAATAAGTTATGTATTATG
40168220 TTATTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATGGAAGTTATTATGTAAGTTA
1 TTATTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATGGAAGTTATTATGTAAGTTA
40168285 TGCAAGATTATAAAATAAGTTATGTATTATG
66 TGCAAGATTATAAAATAAGTTATGTATTATG
*
40168316 TTATTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATATGGAAGTTATTATATAAGT
1 TTATTATGTATTATGTAATTTATTATGTTATTATATATAAG-T-TATGGAAGTTATTATGTAAGT
*
40168381 TATGCAAGCTTATAAAATAAGTTATGTATTATG
64 TATGCAAGATTATAAAATAAGTTATGTATTATG
40168414 TTATTATGTATTATGTAATTTATTATGT
1 TTATTATGTATTATGTAATTTATTATGT
40168442 GAGTATAGTA
Statistics
Matches: 314, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
96 233 0.74
97 1 0.00
98 80 0.25
ACGTcount: A:0.36, C:0.01, G:0.14, T:0.49
Consensus pattern (96 bp):
TTATTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATGGAAGTTATTATGTAAGTTA
TGCAAGATTATAAAATAAGTTATGTATTATG
Found at i:40168207 original size:22 final size:21
Alignment explanation
Indices: 40168160--40168212 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
40168150 GTTATTATAT
* * *
40168160 ATAAGTTATGGAAGTTATTAT
1 ATAAGTTATGCAAGTTATAAA
*
40168181 GTAAGTTATGCAAGATTATAAA
1 ATAAGTTATGCAAG-TTATAAA
40168203 ATAAGTTATG
1 ATAAGTTATG
40168213 TATTATGTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.38
Consensus pattern (21 bp):
ATAAGTTATGCAAGTTATAAA
Found at i:40168226 original size:8 final size:7
Alignment explanation
Indices: 40168208--40168253 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
40168198 ATAAAATAAG
40168208 TTATGTA
1 TTATGTA
40168215 TTATGTTA
1 TTATG-TA
40168223 TTATGTA
1 TTATGTA
40168230 TTATGTA
1 TTATGTA
*
40168237 --ATTTA
1 TTATGTA
40168242 TTATGTTA
1 TTATG-TA
40168250 TTAT
1 TTAT
40168254 ATATAAGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:40168228 original size:15 final size:15
Alignment explanation
Indices: 40168208--40168253 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
40168198 ATAAAATAAG
40168208 TTATGTATTATGTTA
1 TTATGTATTATGTTA
40168223 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
40168237 --ATTTATTATGTTA
1 TTATGTATTATGTTA
40168250 TTAT
1 TTAT
40168254 ATATAAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:40168303 original size:22 final size:21
Alignment explanation
Indices: 40168256--40168308 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
40168246 GTTATTATAT
* * *
40168256 ATAAGTTATGGAAGTTATTAT
1 ATAAGTTATGCAAGTTATAAA
*
40168277 GTAAGTTATGCAAGATTATAAA
1 ATAAGTTATGCAAG-TTATAAA
40168299 ATAAGTTATG
1 ATAAGTTATG
40168309 TATTATGTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.38
Consensus pattern (21 bp):
ATAAGTTATGCAAGTTATAAA
Found at i:40168322 original size:8 final size:7
Alignment explanation
Indices: 40168304--40168349 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
40168294 ATAAAATAAG
40168304 TTATGTA
1 TTATGTA
40168311 TTATGTTA
1 TTATG-TA
40168319 TTATGTA
1 TTATGTA
40168326 TTATGTA
1 TTATGTA
*
40168333 --ATTTA
1 TTATGTA
40168338 TTATGTTA
1 TTATG-TA
40168346 TTAT
1 TTAT
40168350 ATATAAGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:40168324 original size:15 final size:15
Alignment explanation
Indices: 40168304--40168349 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
40168294 ATAAAATAAG
40168304 TTATGTATTATGTTA
1 TTATGTATTATGTTA
40168319 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
40168333 --ATTTATTATGTTA
1 TTATGTATTATGTTA
40168346 TTAT
1 TTAT
40168350 ATATAAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:40168586 original size:20 final size:20
Alignment explanation
Indices: 40168563--40168601 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
40168553 GTTATTTCTT
*
40168563 TATTTATTTAATTTAATTTA
1 TATTTATTTAATATAATTTA
* *
40168583 TATTTGTTTTATATAATTT
1 TATTTATTTAATATAATTT
40168602 TTTCACGTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (20 bp):
TATTTATTTAATATAATTTA
Found at i:40169105 original size:33 final size:33
Alignment explanation
Indices: 40169067--40169170 Score: 95
Period size: 33 Copynumber: 3.2 Consensus size: 33
40169057 CTCGGGTTAA
40169067 TAAATTTAAAGTATATTAAATATAAGTTAATGG
1 TAAATTTAAAGTATATTAAATATAAGTTAATGG
* * ** * ** ** *
40169100 TAAA-TTCAATTATATT-TTTCTCTGCAACATAG
1 TAAATTTAAAGTATATTAAATATAAGTTA-ATGG
40169132 TAAATTTAAAGTATATTAAATATAAGTTAATGG
1 TAAATTTAAAGTATATTAAATATAAGTTAATGG
40169165 TAAATT
1 TAAATT
40169171 CAGGTCTGAT
Statistics
Matches: 48, Mismatches: 20, Indels: 6
0.65 0.27 0.08
Matches are distributed among these distances:
31 4 0.08
32 17 0.35
33 23 0.48
34 4 0.08
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (33 bp):
TAAATTTAAAGTATATTAAATATAAGTTAATGG
Found at i:40170855 original size:8 final size:8
Alignment explanation
Indices: 40170842--40170866 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
40170832 TATCAATATT
40170842 TTTTTATA
1 TTTTTATA
40170850 TTTTTATA
1 TTTTTATA
40170858 TTTTTATA
1 TTTTTATA
40170866 T
1 T
40170867 ATTGCGGCGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTATA
Found at i:40171260 original size:227 final size:227
Alignment explanation
Indices: 40170865--40172014 Score: 1767
Period size: 227 Copynumber: 5.1 Consensus size: 227
40170855 ATATTTTTAT
40170865 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
40170930 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
66 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
40170995 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTAC
131 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTAC
40171060 CTCAAGACCAAACTCTGCGTTTTGGTTAAGAA
196 CTCAAGACCAAACTCTGCGTTTTGGTTAAGAA
40171092 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
40171157 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
66 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
40171222 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTAC
131 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTAC
40171287 CTCAAGACCAAACTCTGCGTTTTGGTTAAGAA
196 CTCAAGACCAAACTCTGCGTTTTGGTTAAGAA
40171319 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
40171384 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
66 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
40171449 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTAC
131 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTAC
40171514 CTCAAGACCAAACTCTGCGTTTTGGTTAAGAA
196 CTCAAGACCAAACTCTGCGTTTTGGTTAAGAA
40171546 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
40171611 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
66 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
* * * * * * *
40171676 AATAAGCGCCGCTAATAATATGTTTTAGCGGCGTTTT-ACCATAAGCGCCAC-AACTGCTAGTAT
131 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCA-AATAAGCACCACTAA-TCCTAATGT
* * * *
40171739 ACATCAAGACCAATGCGCTGCGTTTTGGTT-A-AT
194 ACCTCAAGACCAA-ACTCTGCGTTTTGGTTAAGAA
* * * ** * * * *
40171772 ATTTTGCGGCGCTTTACAATAAGCGCCGCTAATACTATGCTTTACCGGCGTTTTCAA-ATAAGCG
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTT-AATATAAGCG
** * * ** * *
40171836 CCACTAATCCTAATGTACCTCAAGACCAAA-CTATGCGTTTTGGTTAAGAAATATTGCGGCGCTT
65 CCACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTT-A-ATATTTTGCGGCGCTT
* * ** ** * * * **
40171900 TTCAGTACTCGCTACTAATACTATACTTTAGCGGCGTTTT-AATATAAACGCCACTAAGGCTAAT
128 TACAATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAA-ATAAGCACCACTAATCCTAAT
* * *
40171964 ATACATCAAGACCAAAGCGT-TGCGTTTTGGTTAAGAG
192 GTACCTCAAGACCAAA-C-TCTGCGTTTTGGTTAAGAA
* *
40172001 CTTTTGCGGCGCTT
1 ATATTGCGGCGCTT
40172015 GGTAGTAAAC
Statistics
Matches: 866, Mismatches: 45, Indels: 22
0.93 0.05 0.02
Matches are distributed among these distances:
225 13 0.02
226 83 0.10
227 739 0.85
228 17 0.02
229 14 0.02
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (227 bp):
ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTAC
CTCAAGACCAAACTCTGCGTTTTGGTTAAGAA
Found at i:40171502 original size:340 final size:339
Alignment explanation
Indices: 40170865--40172014 Score: 1603
Period size: 340 Copynumber: 3.4 Consensus size: 339
40170855 ATATTTTTAT
40170865 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
40170930 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
66 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
* * *
40170995 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTAC
131 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTT-AAATAAGCGCCACTAATGCTAATATAC
* * * * * * **
40171060 CTCAAGACCAAA-CTCTGCGTTTTGGTTAAGAAATATTGCGGCGCTTTTCAGTACTCGCCGCTAA
195 ATCAAGACCAAAGCGCTGCGTTTTGGTT-A-ATATTTTGCGGCGCTTTACAATAAGCGCCGCTAA
* * * ** * *
40171124 TACTATACTTTAGCAGCATTTT-AATATAAGCGCCACTAAGGCTAATATACATCAAGACCAAAGC
258 TACTATGCTTTAGCGGCGTTTTCAA-ATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAA-C
* *
40171188 GCTGCGTTTTGGTT-A-AT
321 TCTGCGTTTTGGTTAAGAA
* * * ** * * * *
40171205 ATTTTGCGGCGCTTTACAATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAA-ATAAGCA
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTT-AATATAAGCG
** * * * * *
40171269 CCACTAATCCTAATGTACCTCAAGACCAAA-CTCTGCGTTTTGGTTAAGAAATATTGCGGCGCTT
65 CCACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTT-A-ATATTTTGCGGCGCTT
* * ** * * * *
40171333 TTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGCCACTAAGGCTAATA
128 TACAATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTAA-ATAAGCGCCACTAATGCTAATA
40171398 TACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAAGCGCCGCTA
192 TACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAAGCGCCGCTA
*
40171463 ATACTATGCTTTAGCGGCGTTTTCAAATAAGCACCACTAATCCTAATGTACCTCAAGACCAAACT
257 ATACTATGCTTTAGCGGCGTTTTCAAATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACT
40171528 CTGCGTTTTGGTTAAGAA
322 CTGCGTTTTGGTTAAGAA
40171546 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
40171611 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
66 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
* * * *
40171676 AATAAGCGCCGCTAATAATATGTTTTAGCGGCGTTTTACCATAAGCGCCAC-AACTGCTAGTATA
131 AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTA-AATAAGCGCCACTAA-TGCTAATATA
*
40171740 CATCAAGACCAATGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAAGCGCCGCTAAT
194 CATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAAGCGCCGCTAAT
* *
40171805 ACTATGCTTTACCGGCGTTTTCAAATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACTAT
259 ACTATGCTTTAGCGGCGTTTTCAAATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACTCT
40171870 GCGTTTTGGTTAAGAA
324 GCGTTTTGGTTAAGAA
** * * *
40171886 ATATTGCGGCGCTTTTCAGTACTCGCTACTAATACTATACTTTAGCGGCGTTTTAATATAAACGC
1 ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
* *
40171951 CACTAAGGCTAATATACATCAAGACCAAAGCGTTGCGTTTTGGTTAAGAGCTTTTGCGGCGCTT
66 CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATA--TTTTGCGGCGCTT
40172015 GGTAGTAAAC
Statistics
Matches: 712, Mismatches: 84, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
339 30 0.04
340 477 0.67
341 164 0.23
342 41 0.06
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (339 bp):
ATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTAGCAGCATTTTAATATAAGCGC
CACTAAGGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTAC
AATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTAAATAAGCGCCACTAATGCTAATATACA
TCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAAGCGCCGCTAATAC
TATGCTTTAGCGGCGTTTTCAAATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACTCTGC
GTTTTGGTTAAGAA
Found at i:40182147 original size:19 final size:20
Alignment explanation
Indices: 40182125--40182163 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
40182115 TAATTTGGTC
40182125 ATTTC-CTTTTAATCCCAAA
1 ATTTCTCTTTTAATCCCAAA
*
40182144 ATTTCTGTTTTAATCCCAAA
1 ATTTCTCTTTTAATCCCAAA
40182164 TTAGCCCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.31, C:0.23, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTTCTCTTTTAATCCCAAA
Found at i:40182220 original size:19 final size:20
Alignment explanation
Indices: 40182193--40182232 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
40182183 ATTAGTTTAA
40182193 TATTAATTTATTATTATTAT
1 TATTAATTTATTATTATTAT
* *
40182213 TATT-ATTTGTTATTGTTAT
1 TATTAATTTATTATTATTAT
40182232 T
1 T
40182233 GACATTATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TATTAATTTATTATTATTAT
Found at i:40186978 original size:8 final size:8
Alignment explanation
Indices: 40186961--40187021 Score: 61
Period size: 8 Copynumber: 7.1 Consensus size: 8
40186951 GTTCAGATTC
40186961 AATAAAAA
1 AATAAAAA
*
40186969 AATAAGAA
1 AATAAAAA
40186977 AATAAAAA
1 AATAAAAA
40186985 AATAAAAAA
1 AAT-AAAAA
40186994 AATCAAAAGA
1 AAT-AAAA-A
40187004 AA-AAATCAA
1 AATAAA--AA
40187013 AATAAAAA
1 AATAAAAA
40187021 A
1 A
40187022 TCAAAATAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
8 23 0.51
9 15 0.33
10 7 0.16
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.11
Consensus pattern (8 bp):
AATAAAAA
Found at i:40186982 original size:16 final size:15
Alignment explanation
Indices: 40186961--40187035 Score: 61
Period size: 13 Copynumber: 5.2 Consensus size: 15
40186951 GTTCAGATTC
40186961 AATAAAAAAATAAGAA
1 AATAAAAAAATAA-AA
40186977 AATAAAAAAATAAAA
1 AATAAAAAAATAAAA
* *
40186992 AA-AATCAAAAGAAAA
1 AATAA-AAAAATAAAA
*
40187007 AAT--CAAAATAAAA
1 AATAAAAAAATAAAA
*
40187020 AAT--CAAAATAAAA
1 AATAAAAAAATAAAA
40187033 AAT
1 AAT
40187036 CAATCAAAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
13 25 0.46
14 2 0.04
15 14 0.26
16 13 0.24
ACGTcount: A:0.80, C:0.04, G:0.03, T:0.13
Consensus pattern (15 bp):
AATAAAAAAATAAAA
Found at i:40186991 original size:13 final size:14
Alignment explanation
Indices: 40186983--40187038 Score: 73
Period size: 13 Copynumber: 4.1 Consensus size: 14
40186973 AGAAAATAAA
40186983 AAAATAAAAAAAATC
1 AAAAT-AAAAAAATC
*
40186998 AAAA-GAAAAAATC
1 AAAATAAAAAAATC
40187011 AAAAT-AAAAAATC
1 AAAATAAAAAAATC
40187024 AAAAT-AAAAAATC
1 AAAATAAAAAAATC
40187037 AA
1 AA
40187039 TCAAAATCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
13 35 0.90
15 4 0.10
ACGTcount: A:0.79, C:0.07, G:0.02, T:0.12
Consensus pattern (14 bp):
AAAATAAAAAAATC
Found at i:40187079 original size:6 final size:6
Alignment explanation
Indices: 40187070--40187110 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
40187060 GAGAATGATG
*
40187070 AAAAGAA AAAAGA AAAGGA AAAAGA AAAAGA AAAAGA AAAA
1 AAAAG-A AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAA
40187111 AAAGGAGAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 27 0.84
7 5 0.16
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:40187259 original size:16 final size:16
Alignment explanation
Indices: 40187238--40187273 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
40187228 ATCATCGAAG
40187238 GCTTCTAATGAGTATT
1 GCTTCTAATGAGTATT
*
40187254 GCTTCTAATGGGTATT
1 GCTTCTAATGAGTATT
40187270 GCTT
1 GCTT
40187274 ACTTTTCGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.19, C:0.14, G:0.22, T:0.44
Consensus pattern (16 bp):
GCTTCTAATGAGTATT
Found at i:40189687 original size:44 final size:44
Alignment explanation
Indices: 40189271--40189674 Score: 632
Period size: 44 Copynumber: 9.2 Consensus size: 44
40189261 CACAAAGCCT
* *
40189271 TATCTCCCTGGCCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
40189315 TATCTCCCTGACCAGCAGTGAAATAGGTTGAAGACTGTAAGCCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
40189359 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAG-TTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
40189402 TATCTCCCTGACCAGCAGTGGAATAGGTTAAAGATTGCAAGCCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
40189446 TTTCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
40189490 TATCTCCCCGACCAGCAGTGGAATAGGTTGAAGATTGCAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
40189534 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
40189578 TATCTCCCCGACCAGCAGTGGAATAGGTGGAGGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
40189622 TATCTCCCTGAACAACAGTGGAATAGGTTGAAGATTGTATA-TCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTA-AGTCC
*
40189666 TGTCTCCCT
1 TATCTCCCT
40189675 AAGCAGTAGT
Statistics
Matches: 329, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
43 40 0.12
44 288 0.88
45 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:40191153 original size:19 final size:20
Alignment explanation
Indices: 40191131--40191169 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
40191121 TAATTTGGTC
40191131 ATTTC-CTTTTAATCCCAAA
1 ATTTCTCTTTTAATCCCAAA
*
40191150 ATTTCTGTTTTAATCCCAAA
1 ATTTCTCTTTTAATCCCAAA
40191170 TTAGCCCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.31, C:0.23, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTTCTCTTTTAATCCCAAA
Found at i:40191363 original size:20 final size:18
Alignment explanation
Indices: 40191317--40191372 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 18
40191307 TATTTCAAAT
40191317 TCTTTATATATATATATATA
1 TCTTTAT-TATATAT-TATA
40191337 T-TATTATGTATATATTATCA
1 TCT-TTAT-TATATATTAT-A
40191357 TCTTTATTAT-TATTAT
1 TCTTTATTATATATTAT
40191373 TATTATTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
18 6 0.19
19 7 0.22
20 18 0.56
21 1 0.03
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (18 bp):
TCTTTATTATATATTATA
Found at i:40199384 original size:19 final size:21
Alignment explanation
Indices: 40199355--40199396 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
40199345 AATAGTTTGA
40199355 TTTGTTAAAAAAC-TTTTAAC
1 TTTGTTAAAAAACATTTTAAC
*
40199375 TTTGTT-AAAATCATTTTAAC
1 TTTGTTAAAAAACATTTTAAC
40199395 TT
1 TT
40199397 GATTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.50
Consensus pattern (21 bp):
TTTGTTAAAAAACATTTTAAC
Found at i:40205654 original size:19 final size:21
Alignment explanation
Indices: 40205625--40205666 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
40205615 AATAGTTTGA
40205625 TTTGTTAAAAAAC-TTTTAAC
1 TTTGTTAAAAAACATTTTAAC
*
40205645 TTTGTT-AAAATCATTTTAAC
1 TTTGTTAAAAAACATTTTAAC
40205665 TT
1 TT
40205667 GATTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.50
Consensus pattern (21 bp):
TTTGTTAAAAAACATTTTAAC
Found at i:40215502 original size:26 final size:26
Alignment explanation
Indices: 40215472--40215533 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
40215462 CTACCTAAGT
40215472 AGTTTCAGAATACCATAAG-ATATATC
1 AGTTTCAGAATACCAT-AGCATATATC
* * * *
40215498 AGTTTCAGATTATCATAGCATGTATT
1 AGTTTCAGAATACCATAGCATATATC
40215524 AGTTTCAGAA
1 AGTTTCAGAA
40215534 CACTTACAGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 2 0.07
26 28 0.93
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (26 bp):
AGTTTCAGAATACCATAGCATATATC
Found at i:40232252 original size:14 final size:14
Alignment explanation
Indices: 40232235--40232262 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
40232225 AAGATTTAAA
40232235 TATCTAAACTATAT
1 TATCTAAACTATAT
40232249 TATCTAAACTATAT
1 TATCTAAACTATAT
40232263 AAATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (14 bp):
TATCTAAACTATAT
Found at i:40249621 original size:42 final size:44
Alignment explanation
Indices: 40249505--40249673 Score: 159
Period size: 43 Copynumber: 3.9 Consensus size: 44
40249495 AGGACTCCGA
* **
40249505 TATG-TGATTTCGTATAAGACCATGTCTGGGATGTTGGCATCGC
1 TATGATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGC
* *
40249548 TTTGA-GATTTACGAGTAAGACCATGTCTGGGACATTGGCATCG-
1 TATGATGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGC
* * * *
40249591 TAT-ATGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCGA
1 TATGATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGC
* * * * * *
40249634 TA-GTTGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 TATGATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
40249674 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
42 29 0.28
43 45 0.44
44 28 0.27
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (44 bp):
TATGATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGC
Found at i:40257251 original size:21 final size:19
Alignment explanation
Indices: 40257222--40257266 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
40257212 TAAGTTGTTA
*
40257222 GATTATTATGTTTAATTAAG
1 GATTATTATGTGT-ATTAAG
*
40257242 TGATTTTTATGTGTATTAAG
1 -GATTATTATGTGTATTAAG
40257262 GATTA
1 GATTA
40257267 AATTGTGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.19
20 6 0.29
21 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
GATTATTATGTGTATTAAG
Found at i:40257585 original size:457 final size:460
Alignment explanation
Indices: 40256718--40257630 Score: 1625
Period size: 457 Copynumber: 2.0 Consensus size: 460
40256708 GAATTGTTGT
40256718 TTTTTATTGTTTGATGATGGAAAATAAAAATAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
1 TTTTTATTGTTTGATGATGGAAAATAAAAATAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
40256783 TTTAGTAAAAATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAA
66 TTTA-T---AATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAA
* *
40256848 AGAAATGAAATAAATTGGCTGCTATGAACCTTAGTAAAATTTGGCTATATTTGAGTTTGGTGAAA
127 AGAAATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAA
* *
40256913 TTTTGAATATTTTCTATTTTGTGAAATAATGACTAAATTGTGAAAAATGTAAAATGTTAGGGGAT
192 TTTTGAATATTTTCTATTTTGTGAAATAAGGACTAAATTGTGAAAAACGTAAAATGTTAGGGGAT
*
40256978 AAAGTGCTAATTTCCCTTTTACGTGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTT
257 AAAGTGCTAATTGCCCTTTTACGTGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTT
40257043 AAATTTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTT
322 AAATTTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTT
* * *
40257108 GTTGATTAGTCGTTCCGGTTCGTTCGTCTCTGCACGAGGTAAGTTCATAAGTGAATAAATGATGT
387 GTCGATTAGTCGTTCCGGTTCATTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGT
40257173 TTAATTAAG
452 TTAATTAAG
*
40257182 TTTTTGTTGTTTGATGATGGAAAATAAAAATAAGTTGTTAGATTATTATGTTTAATTAAGTGA-T
1 TTTTTATTGTTTGATGATGGAAAATAAAAATAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
*
40257246 TTT-T-ATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAATAA
66 TTTATAATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAAGAA
*
40257309 ATGAAATAAATGGGCTGTTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTTT
131 ATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTTT
* *
40257374 GAATATTTTTTGTTTTGTGAAATAAGGACTAAATTGTGAAAAACGTAAAATGTTAGGGGATAAAG
196 GAATATTTTCTATTTTGTGAAATAAGGACTAAATTGTGAAAAACGTAAAATGTTAGGGGATAAAG
*
40257439 TGCTAATTGCCCTTTTATGTGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAAT
261 TGCTAATTGCCCTTTTACGTGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAAT
40257504 TTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTTGTCG
326 TTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTTGTCG
* *
40257569 ATTAGTCGTTCCGGTTCATTCGTCTCCGCATGAGGTAAGTTCCTAAGTGAATAAATGATGTT
391 ATTAGTCGTTCCGGTTCATTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGTT
40257631 AAACTGAATA
Statistics
Matches: 433, Mismatches: 16, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
457 366 0.85
461 1 0.00
463 4 0.01
464 62 0.14
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (460 bp):
TTTTTATTGTTTGATGATGGAAAATAAAAATAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
TTTATAATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAAGAA
ATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTTT
GAATATTTTCTATTTTGTGAAATAAGGACTAAATTGTGAAAAACGTAAAATGTTAGGGGATAAAG
TGCTAATTGCCCTTTTACGTGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAAT
TTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTTGTCG
ATTAGTCGTTCCGGTTCATTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGTTTAA
TTAAG
Found at i:40264588 original size:7 final size:6
Alignment explanation
Indices: 40264552--40264587 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
40264542 AAGTTTCTCA
*
40264552 AAATGG AAATCG AAATGG AAATGG AAATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG
40264588 ATACATTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.53, C:0.03, G:0.28, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:40271631 original size:52 final size:53
Alignment explanation
Indices: 40271567--40271704 Score: 188
Period size: 52 Copynumber: 2.6 Consensus size: 53
40271557 CGGAGTTTGG
* * * *
40271567 CACAAAGTCTTTCCTTCATATTACGCCACAAAGGC-TTTCTTTCATTTTATGT
1 CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCGTTCCTTTCATTTTATGC
*
40271619 CACAAAGGCTTTCTTTCATTTTACGCCACAAAGGCGTTCCTTTCATTTTATGC
1 CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCGTTCCTTTCATTTTATGC
* * *
40271672 CATAAAGGCATTCCTTTCATTTTATGCCACAAA
1 CACAAAGGCTTTCC-TTCATTTTACGCCACAAA
40271705 AGCATTCATT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
52 32 0.43
53 26 0.35
54 17 0.23
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (53 bp):
CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCGTTCCTTTCATTTTATGC
Found at i:40271711 original size:27 final size:26
Alignment explanation
Indices: 40271567--40271704 Score: 170
Period size: 26 Copynumber: 5.2 Consensus size: 26
40271557 CGGAGTTTGG
* * *
40271567 CACAAAGTCTTTCC-TTCATATTACGC
1 CACAAAGGC-TTCCTTTCATTTTATGC
* *
40271593 CACAAAGGCTTTCTTTCATTTTATGT
1 CACAAAGGCTTCCTTTCATTTTATGC
* *
40271619 CACAAAGGCTTTCTTTCATTTTACGC
1 CACAAAGGCTTCCTTTCATTTTATGC
40271645 CACAAAGGCGTTCCTTTCATTTTATGC
1 CACAAAGGC-TTCCTTTCATTTTATGC
*
40271672 CATAAAGGCATTCCTTTCATTTTATGC
1 CACAAAGGC-TTCCTTTCATTTTATGC
40271699 CACAAA
1 CACAAA
40271705 AGCATTCATT
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
25 3 0.03
26 50 0.51
27 45 0.46
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (26 bp):
CACAAAGGCTTCCTTTCATTTTATGC
Found at i:40286173 original size:18 final size:19
Alignment explanation
Indices: 40286142--40286178 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
40286132 AAATCAAAAT
40286142 ATTAATTAAACT-AATTAA
1 ATTAATTAAACTAAATTAA
40286160 ATTAA-TAAACCTAAATTAA
1 ATTAATTAAA-CTAAATTAA
40286179 CCTAATGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAATTAAACTAAATTAA
Found at i:40287019 original size:20 final size:20
Alignment explanation
Indices: 40286994--40287067 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
40286984 ACATCCAAGA
40286994 TATGGCTCAACATAGGTTGC
1 TATGGCTCAACATAGGTTGC
* *
40287014 TATGGCTCAACACAGGGGTTTC
1 TATGGCTCAACATA--GGTTGC
* *
40287036 TATTGCTCAACATAGGTTGT
1 TATGGCTCAACATAGGTTGC
40287056 TATGGCTCAACA
1 TATGGCTCAACA
40287068 CAAGGTGCAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
20 28 0.62
22 17 0.38
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (20 bp):
TATGGCTCAACATAGGTTGC
Found at i:40287831 original size:49 final size:50
Alignment explanation
Indices: 40287774--40287873 Score: 139
Period size: 50 Copynumber: 2.0 Consensus size: 50
40287764 TTATAGAGAC
* *
40287774 CATATGGAAAACATT-AAACATATTATAGTCTTTCCAAAAAGAATTCTAA
1 CATATGGAAAACATTAAAAAATATTATAGTCTTTCCAAAAAGAATTATAA
** * *
40287823 CATATGGAAAGTATTAAAAAATGTTATATTCTTTCCAAAAAGAATTATAA
1 CATATGGAAAACATTAAAAAATATTATAGTCTTTCCAAAAAGAATTATAA
40287873 C
1 C
40287874 TACCATGTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 13 0.30
50 31 0.70
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (50 bp):
CATATGGAAAACATTAAAAAATATTATAGTCTTTCCAAAAAGAATTATAA
Found at i:40291539 original size:19 final size:19
Alignment explanation
Indices: 40291498--40291545 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
40291488 ATCTAGTCAT
*
40291498 TTTTTATTTTAATATTTTTA
1 TTTTTA-TTTAATATTTTCA
40291518 TTTTTATTTAAT-TTTTACA
1 TTTTTATTTAATATTTT-CA
*
40291537 TTTTAATTT
1 TTTTTATTT
40291546 TTCGTTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.16
19 15 0.60
20 6 0.24
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTATTTAATATTTTCA
Found at i:40293586 original size:14 final size:14
Alignment explanation
Indices: 40293569--40293595 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
40293559 TGTACTTTTA
40293569 TTTTTGTTTTGTTT
1 TTTTTGTTTTGTTT
40293583 TTTTTGTTTTGTT
1 TTTTTGTTTTGTT
40293596 AGTTATTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (14 bp):
TTTTTGTTTTGTTT
Found at i:40296466 original size:18 final size:19
Alignment explanation
Indices: 40296445--40296480 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
40296435 ACTCGTTTAG
*
40296445 TTTTCTTTTTCCA-TTTTT
1 TTTTCGTTTTCCACTTTTT
40296463 TTTTCGTTTTCCACTTTT
1 TTTTCGTTTTCCACTTTT
40296481 AAACAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.06, C:0.19, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTCGTTTTCCACTTTTT
Found at i:40301074 original size:51 final size:50
Alignment explanation
Indices: 40300905--40301091 Score: 171
Period size: 51 Copynumber: 3.7 Consensus size: 50
40300895 AGTGAAAGTG
* * *
40300905 ATGGTCACGTGTGTAGTACTATGTGCAGACTACTACGTGTACCAGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAATGGT
** * * * * * *
40300956 A-GGTTGCATGTGTAGTACTATGTGCAAGCTACTATGCGTACTGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAATGGT
* * ** * *
40301005 TTCGATCATGTGTATAGTACTATGTGCAGGCTACTACATGTATC-GAATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAATGGT
40301056 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
40301092 TGTGAACCAA
Statistics
Matches: 103, Mismatches: 29, Indels: 8
0.74 0.21 0.06
Matches are distributed among these distances:
49 5 0.05
50 32 0.31
51 64 0.62
52 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAATGGT
Found at i:40301153 original size:45 final size:45
Alignment explanation
Indices: 40301102--40301190 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
40301092 TGTGAACCAA
* * *
40301102 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACCGG
40301147 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACCG
40301191 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACCGG
Found at i:40308613 original size:50 final size:50
Alignment explanation
Indices: 40308553--40308648 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
40308543 AGGTGCTAAT
*
40308553 ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTTGCAA
1 ATTTTATTATATGTGGTATGACATGTATGCTTTATAAATGGAGTTTGCAA
* **
40308603 ATTTTGTTATATGTGGTATGAGGTGTATGCTTTATAAATGGAGTTT
1 ATTTTATTATATGTGGTATGACATGTATGCTTTATAAATGGAGTTT
40308649 TAGCTTTGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.26, C:0.04, G:0.23, T:0.47
Consensus pattern (50 bp):
ATTTTATTATATGTGGTATGACATGTATGCTTTATAAATGGAGTTTGCAA
Found at i:40317851 original size:32 final size:32
Alignment explanation
Indices: 40317815--40317875 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
40317805 CTCGAAATTT
*
40317815 CGGACACAGGGACACTGTCCACATGTTGGACA
1 CGGACACAGGGACACTGTCCAAATGTTGGACA
** *
40317847 CGGACACTTGGACACTTTCCAAATGTTGG
1 CGGACACAGGGACACTGTCCAAATGTTGG
40317876 GTACGGCAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (32 bp):
CGGACACAGGGACACTGTCCAAATGTTGGACA
Found at i:40319461 original size:105 final size:105
Alignment explanation
Indices: 40319326--40319538 Score: 390
Period size: 105 Copynumber: 2.0 Consensus size: 105
40319316 AAAACCCTAC
* *
40319326 ACATCACAGTAATGACAACTGACAACACAAAACTAAAGAACCGATAACTGCTAGCAGTGAAGTGT
1 ACATCACAGTAATGACAACTGACAAAACAAAACTAAAGAACCGATAACTGCTAGCAGTAAAGTGT
*
40319391 ATTAACCAAAGTTCATGTGCAGTCTCATTTTCATAGGCAT
66 ATTAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
*
40319431 ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCGATAACTGCTAGCAGTAAAGTGT
1 ACATCACAGTAATGACAACTGACAAAACAAAACTAAAGAACCGATAACTGCTAGCAGTAAAGTGT
40319496 ATTAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
66 ATTAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
40319536 ACA
1 ACA
40319539 CCAATGCATG
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (105 bp):
ACATCACAGTAATGACAACTGACAAAACAAAACTAAAGAACCGATAACTGCTAGCAGTAAAGTGT
ATTAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
Found at i:40332618 original size:11 final size:12
Alignment explanation
Indices: 40332602--40332630 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
40332592 TTCATCCTAC
40332602 ATAAAATAAAA-
1 ATAAAATAAAAT
40332613 ATAAAATAAAAT
1 ATAAAATAAAAT
40332625 ATAAAA
1 ATAAAA
40332631 AAACACGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAAAATAAAAT
Found at i:40335089 original size:46 final size:46
Alignment explanation
Indices: 40335021--40335110 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
40335011 TTTATTGCAA
* * *
40335021 TAAGAGTTTTAGTTTTATTTATTTTCTTTATTATGTCAGGTTTTAT
1 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTTAT
*
40335067 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATTAGGTTTT
1 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTT
40335111 TATTTCCTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.22, C:0.06, G:0.12, T:0.60
Consensus pattern (46 bp):
TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTTAT
Found at i:40342826 original size:24 final size:24
Alignment explanation
Indices: 40342797--40342885 Score: 76
Period size: 24 Copynumber: 3.7 Consensus size: 24
40342787 CTTATGAGCG
40342797 TCCCAA-TATATGGCTCTTCGAAGC
1 TCCCAATTA-ATGGCTCTTCGAAGC
* * *
40342821 TCCCAATTAAAGGCTCTTTGTGAGC
1 TCCCAATTAATGGCTCTTCG-AAGC
* *
40342846 TACCTAATTAATGGCTCTCCGAAGC
1 T-CCCAATTAATGGCTCTTCGAAGC
40342871 TTCCCAA-T-ATGGCTC
1 -TCCCAATTAATGGCTC
40342886 GCTTGAACTT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
23 7 0.13
24 16 0.31
25 13 0.25
26 16 0.31
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (24 bp):
TCCCAATTAATGGCTCTTCGAAGC
Found at i:40342921 original size:25 final size:24
Alignment explanation
Indices: 40342868--40342921 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
40342858 GGCTCTCCGA
* *
40342868 AGCTT-CCCAATATGGCTCGCTTG
1 AGCTTCCCCAATATGGCTAGCTAG
* *
40342891 AACTTCCCCATATATGGCTATCTAG
1 AGCTTCCCCA-ATATGGCTAGCTAG
40342916 AGCTTC
1 AGCTTC
40342922 TTGATTAATG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
23 4 0.17
24 4 0.17
25 16 0.67
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (24 bp):
AGCTTCCCCAATATGGCTAGCTAG
Found at i:40343043 original size:25 final size:25
Alignment explanation
Indices: 40342987--40343061 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
40342977 TATGGTTATT
** *
40342987 ATGAGCTTCCCGTTATACAGCCCGA
1 ATGAGCTTCCCGTTATATGGCTCGA
*
40343012 ATAAGCTTCCCGTTATATGGCTC-A
1 ATGAGCTTCCCGTTATATGGCTCGA
*
40343036 CATGAGCTTCCTGTTATATGGCTCGA
1 -ATGAGCTTCCCGTTATATGGCTCGA
40343062 GAAAGAGCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 1 0.02
25 40 0.95
26 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCGA
Found at i:40343077 original size:27 final size:25
Alignment explanation
Indices: 40343015--40343087 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 25
40343005 AGCCCGAATA
* * *
40343015 AGCTTCCCGTTATATGGCTCACATG
1 AGCTTCCTGTTATATGGCTCAAAAG
40343040 AGCTTCCTGTTATATGGCTCGAGAAAG
1 AGCTTCCTGTTATATGGCTC-A-AAAG
40343067 AGCTTCCTGTTTATAT-GCTCA
1 AGCTTCCTG-TTATATGGCTCA
40343088 TATGAGTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 19 0.45
26 2 0.05
27 15 0.36
28 6 0.14
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (25 bp):
AGCTTCCTGTTATATGGCTCAAAAG
Found at i:40345077 original size:43 final size:43
Alignment explanation
Indices: 40345009--40345138 Score: 131
Period size: 43 Copynumber: 3.0 Consensus size: 43
40344999 AAAACTTGTA
* *
40345009 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAAACGTGGTCTTACATGTAAACACATAT
40345052 CAATGCC-ACTGTCCCAAACAG-GGTCTTACATGTAAACACA-AGT
1 CAATGCCAAC-GTCCCAAAC-GTGGTCTTACATGTAAACACATA-T
* ** * ***
40345095 CGATGCTGACGTCCCAGACGTGGTCTTACACAAAAACACATAT
1 CAATGCCAACGTCCCAAACGTGGTCTTACATGTAAACACATAT
40345138 C
1 C
40345139 GAAGGTCCTA
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
42 4 0.05
43 65 0.89
44 4 0.05
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (43 bp):
CAATGCCAACGTCCCAAACGTGGTCTTACATGTAAACACATAT
Found at i:40348313 original size:41 final size:41
Alignment explanation
Indices: 40348181--40348736 Score: 283
Period size: 41 Copynumber: 13.9 Consensus size: 41
40348171 AAATCGAGCA
* * * *
40348181 TTAGCGGCGCTGTTAT-AAAAA-CGCCGCTAAAGGT-AGGCTT
1 TTAGCGGCGCT-TT-TGAAAAAGCGCCGCTAATGCTCCGGCCT
* * **
40348221 TTTGCGGCGCTTTTCAGAAAA-CGCCGCTAATGCT-CTACCT
1 TTAGCGGCGCTTTTGA-AAAAGCGCCGCTAATGCTCCGGCCT
* *
40348261 TTAGTGGCGTTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
* * * **
40348302 TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTAGCCT
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
** *
40348343 TTAGCGGCGCTTTTGAGTAAGCGCCGCTAATGCTCTGGCCT
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
* ** * * *
40348384 TTAGCGGCACTTTTGACTAAGCGCCGCTAAAGGC-CAGAG-CA
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCT-AATGCTCCG-GCCT
* * * *
40348425 TTAGCGGCGCTTACTCAAAAA-CGCCGCTAAAG-GCC--CC-
1 TTAGCGGCGCTT-TTGAAAAAGCGCCGCTAATGCTCCGGCCT
**** * * ** * ** *
40348462 --A--AAAAC---TCAAAAAACGGTGTCGT-TTGGCTTAGGCTT
1 TTAGCGGCGCTTTTGAAAAAGCGCCG-C-TAAT-GCTCCGGCCT
* * **
40348498 TTTGCGGCGCTTTTCAGAAAA-CGCCGCTAATGCT-CTACCT
1 TTAGCGGCGCTTTTGA-AAAAGCGCCGCTAATGCTCCGGCCT
* *
40348538 TTAGTGGCGTTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
* * * **
40348579 TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTAGCCT
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
** *
40348620 TTAGCGGCGCTTTTGAGTAAGCGCCGCTAATGCTCTGGCCT
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
** ** * * *
40348661 TTAGCGGCATTTTTGAGTAAGCGCCGCTAATGCTCTGTCTT
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
* * * *
40348702 TTAGTGGCGTTTTTGAAGAAGCGTCGCTAATGCTC
1 TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTC
40348737 AGATCTTTTG
Statistics
Matches: 404, Mismatches: 84, Indels: 55
0.74 0.15 0.10
Matches are distributed among these distances:
29 7 0.02
30 3 0.01
31 1 0.00
32 2 0.00
33 1 0.00
35 2 0.00
38 2 0.00
39 11 0.03
40 84 0.21
41 270 0.67
42 11 0.03
43 6 0.01
44 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (41 bp):
TTAGCGGCGCTTTTGAAAAAGCGCCGCTAATGCTCCGGCCT
Found at i:40348721 original size:123 final size:122
Alignment explanation
Indices: 40348501--40348736 Score: 337
Period size: 123 Copynumber: 1.9 Consensus size: 122
40348491 TAGGCTTTTT
* *
40348501 GCGGCGCTTTTCAGAAAACGCCGCTAATGCTCTACCTTTAGTGGCGTTTTTGAAAAAGCGCCGCT
1 GCGGCGCTTTTCAGAAAACGCCGCTAATGCTCTACCTTTAGCGGCATTTTTGAAAAAGCGCCGCT
*
40348566 AATGCTCCGGCCTTTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTAGCCTTTA
66 AATGCTCCGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAGCCTTTA
* * * * **
40348623 GCGGCGCTTTTGAGTAAGCGCCGCTAATGCTCTGGCCTTTAGCGGCATTTTTGAGTAAGCGCCGC
1 GCGGCGCTTTTCAGAAAACGCCGCTAATGCTCT-ACCTTTAGCGGCATTTTTGAAAAAGCGCCGC
* * * * *
40348688 TAATGCTCTGTCTTTTAGTGGCGTTTTTGAAGAAGCGTCGCTAATGCTC
65 TAATGCTCCGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
40348737 AGATCTTTTG
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
122 30 0.30
123 69 0.70
ACGTcount: A:0.19, C:0.25, G:0.26, T:0.31
Consensus pattern (122 bp):
GCGGCGCTTTTCAGAAAACGCCGCTAATGCTCTACCTTTAGCGGCATTTTTGAAAAAGCGCCGCT
AATGCTCCGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAGCCTTTA
Found at i:40348838 original size:42 final size:41
Alignment explanation
Indices: 40348762--40348878 Score: 144
Period size: 42 Copynumber: 2.8 Consensus size: 41
40348752 AATGCTGTAT
* * * **
40348762 CCTTTAGCGACGTTTTTGAAGAAGCGCCGGTAATGCTCTGA
1 CCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAAGA
* * *
40348803 CCTTTAGCGGCATTTTTTGAATAAGCGCCGCTAATGTTAAGA
1 CCTTTAGCGGC-GTTTTTGAAAAAGCGCCGCTAATGCTAAGA
*
40348845 TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAAT
1 CCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAAT
40348879 ATTTTTTTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 31 0.48
42 34 0.52
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (41 bp):
CCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAAGA
Found at i:40349186 original size:15 final size:16
Alignment explanation
Indices: 40349166--40349199 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
40349156 CAAATATGGT
40349166 GTTTATGGATTT-AGG
1 GTTTATGGATTTAAGG
40349181 GTTTATGGATTTAAGG
1 GTTTATGGATTTAAGG
40349197 GTT
1 GTT
40349200 AGAGGTTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (16 bp):
GTTTATGGATTTAAGG
Found at i:40349996 original size:22 final size:23
Alignment explanation
Indices: 40349957--40349999 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
40349947 CAAATGTGGA
40349957 AGAAAATAAAAGATAATTAAAGT
1 AGAAAATAAAAGATAATTAAAGT
40349980 AGAAAA-AAAATGA-AATTAAA
1 AGAAAATAAAA-GATAATTAAA
40350000 ACACTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.19
Consensus pattern (23 bp):
AGAAAATAAAAGATAATTAAAGT
Found at i:40350560 original size:22 final size:23
Alignment explanation
Indices: 40350521--40350563 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
40350511 CAAATGTGGA
40350521 AGAAAATAAAAGATAATTAAAGT
1 AGAAAATAAAAGATAATTAAAGT
40350544 AGAAAA-AAAATGA-AATTAAA
1 AGAAAATAAAA-GATAATTAAA
40350564 ACACTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.19
Consensus pattern (23 bp):
AGAAAATAAAAGATAATTAAAGT
Found at i:40359531 original size:66 final size:66
Alignment explanation
Indices: 40359424--40359552 Score: 186
Period size: 66 Copynumber: 2.0 Consensus size: 66
40359414 GACCACAGTT
* * * * *
40359424 GAGGTTCAAAGGAAATATGAAGAACTCTAGCTACAATTTAAAGCAGAGGCGGCAGCGAGAGAAAC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCAACAACTTAAAGCAGAGGCGGCAGCCAGAGAAAC
40359489 A
66 A
* * *
40359490 GAGGTTCAAAAGAAATATGAAGAACTCCAGCAACAACTTAAAGCTGATGCGGCATCCAGAGAA
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCAACAACTTAAAGCAGAGGCGGCAGCCAGAGAA
40359553 GCAAAGGCTG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.43, C:0.17, G:0.25, T:0.16
Consensus pattern (66 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCAACAACTTAAAGCAGAGGCGGCAGCCAGAGAAAC
A
Found at i:40360033 original size:42 final size:43
Alignment explanation
Indices: 40359908--40360039 Score: 185
Period size: 43 Copynumber: 3.1 Consensus size: 43
40359898 AACAAATAGT
* *
40359908 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATGAGCTTTAGT
1 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATGAACTTTAGC
* * *
40359951 GGCATTTGTGTAAAAATCACCGCTAAAGAACATGAACTTTAGC
1 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATGAACTTTAGC
* **
40359994 GGCGTTTGTAT-AAAAGCGCCGCTAAAGAACATGTTCTTTAGC
1 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATGAACTTTAGC
40360036 GGCG
1 GGCG
40360040 CTTTTATTAA
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 31 0.40
43 47 0.60
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATGAACTTTAGC
Found at i:40360159 original size:21 final size:22
Alignment explanation
Indices: 40360130--40360172 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
40360120 TACTTTTTGT
*
40360130 GGCTCTAAAAAGCGCCGCTAAA
1 GGCTCTAAAAAACGCCGCTAAA
40360152 GGCT-TAAAAAACGCCGCTAAA
1 GGCTCTAAAAAACGCCGCTAAA
40360173 AACCTGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.14
Consensus pattern (22 bp):
GGCTCTAAAAAACGCCGCTAAA
Found at i:40363155 original size:25 final size:25
Alignment explanation
Indices: 40363079--40363179 Score: 105
Period size: 25 Copynumber: 4.0 Consensus size: 25
40363069 ATCCCAATAT
40363079 ATGGCTCTTCGTGAGCTTCCCGATTA
1 ATGGCTCTTCG-GAGCTTCCCGATTA
* * * **
40363105 AAGGCTCTTTGTCAGCTTCCTAATTA
1 ATGGCTCTTCG-GAGCTTCCCGATTA
* *
40363131 ATGGCTATCCGGAGCTTCCCGATTA
1 ATGGCTCTTCGGAGCTTCCCGATTA
*
40363156 ATGGCTCTTCGGAGCTACCC-ATTA
1 ATGGCTCTTCGGAGCTTCCCGATTA
40363180 TTTTCTCGCA
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 4 0.07
25 28 0.47
26 28 0.47
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.33
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTTCCCGATTA
Found at i:40366774 original size:17 final size:18
Alignment explanation
Indices: 40366754--40366796 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
40366744 ATTTTAATTA
40366754 TTATTAAGTA-TTTTAAG
1 TTATTAAGTAGTTTTAAG
* *
40366771 TTATTTAGTAGTTTTATG
1 TTATTAAGTAGTTTTAAG
*
40366789 TTAATAAG
1 TTATTAAG
40366797 AAAGTTTAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (18 bp):
TTATTAAGTAGTTTTAAG
Found at i:40369582 original size:39 final size:39
Alignment explanation
Indices: 40369498--40369584 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 39
40369488 CTATTTAGCC
** * *
40369498 AAAGCGCCGCTAAAGGTAGAGAATCCGCGGCGATTTCCA
1 AAAGCGCCGCTAAAAATAGAGAATCAGCGGCGATTTACA
* *
40369537 AGAAGCGCCGCTAAAAATAG-GAATTAGCGGCGATTTATA
1 A-AAGCGCCGCTAAAAATAGAGAATCAGCGGCGATTTACA
40369576 TAAAGCGCC
1 -AAAGCGCC
40369585 ACAAAAAACC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
39 23 0.57
40 17 0.43
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.17
Consensus pattern (39 bp):
AAAGCGCCGCTAAAAATAGAGAATCAGCGGCGATTTACA
Found at i:40369687 original size:41 final size:40
Alignment explanation
Indices: 40369630--40369908 Score: 155
Period size: 41 Copynumber: 6.8 Consensus size: 40
40369620 ATTTTTAAAC
*
40369630 CTTTAGCGGCGTTTTTATTTGTGCGCCGCTAATGCTGAGAT
1 CTTTAGCGGCGTTTTTATTTG-GCGCCGCTAATGCTCAGAT
* * * *
40369671 CTTTAGTGGCGTTTTTACCTTGGCACCGCTAATGCTCCGAT
1 CTTTAGCGGCGTTTTTA-TTTGGCGCCGCTAATGCTCAGAT
* * * *
40369712 CTTTAGCGGCGTTTTTATATGAGCGCCGCTAAAGCTCTG-G
1 CTTTAGCGGCGTTTTTATTTG-GCGCCGCTAATGCTCAGAT
* ** * * *
40369752 CATTTAGCGGCGTTTTTGTCTAAGCGCCGCTAAGGCTCGGAG
1 C-TTTAGCGGCGTTTTTAT-TTGGCGCCGCTAATGCTCAGAT
* ** * ** * * * **
40369794 CTATAGTTGCTTTTTTATCTCAGCGCCACTAATCCTCTGGC
1 CTTTAGCGGCGTTTTTAT-TTGGCGCCGCTAATGCTCAGAT
* * ** * *
40369835 CTTTAGCGGTGTTTTTGTCTAAGCGCTGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTAT-TTGGCGCCGCTAATGCTCAGAT
* * * *
40369876 CTTTAGTGACGTTTTTATCTGAGCGCCACTAAT
1 CTTTAGCGGCGTTTTTATTTG-GCGCCGCTAAT
40369909 TCTCCTGCCT
Statistics
Matches: 180, Mismatches: 52, Indels: 12
0.74 0.21 0.05
Matches are distributed among these distances:
40 3 0.02
41 172 0.96
42 5 0.03
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTATTTGGCGCCGCTAATGCTCAGAT
Found at i:40369767 original size:82 final size:81
Alignment explanation
Indices: 40369630--40369949 Score: 309
Period size: 82 Copynumber: 3.9 Consensus size: 81
40369620 ATTTTTAAAC
* * * ** * * ** **
40369630 CTTTAGCGGCGTTTTTATTTGTGCGCCGCTAATGCTGAGATCTTTAGTGGCGTTTTTACCTTGGC
1 CTTTAGCGGCGTTTTTATCTGAGCGCCACTAATGCTCTG-GCTTTAGCGGCGTTTTTGTCTAAGC
* *
40369695 ACCGCTAATGCTCCGAT
65 GCCGCTAATGCTCGGAT
* * *
40369712 CTTTAGCGGCGTTTTTATATGAGCGCCGCTAAAGCTCTGGCATTTAGCGGCGTTTTTGTCTAAGC
1 CTTTAGCGGCGTTTTTATCTGAGCGCCACTAATGCTCTGGC-TTTAGCGGCGTTTTTGTCTAAGC
* *
40369777 GCCGCTAAGGCTCGGAG
65 GCCGCTAATGCTCGGAT
* ** * * * *
40369794 CTATAGTTGCTTTTTTATCTCAGCGCCACTAATCCTCTGGCCTTTAGCGGTGTTTTTGTCTAAGC
1 CTTTAGCGGCGTTTTTATCTGAGCGCCACTAATGCTCTGG-CTTTAGCGGCGTTTTTGTCTAAGC
*
40369859 GCTGCTAATGCTCGGAT
65 GCCGCTAATGCTCGGAT
* * * * *
40369876 CTTTAGTGACGTTTTTATCTGAGCGCCACTAATTCTCCTGCCTTTAGCAGCGTTTGTT-TCTAAG
1 CTTTAGCGGCGTTTTTATCTGAGCGCCACTAATGCT-CTGGCTTTAGCGGCGTTT-TTGTCTAAG
40369940 CGCCGCTAAT
64 CGCCGCTAAT
40369950 AGTAACAAAA
Statistics
Matches: 196, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
81 1 0.01
82 189 0.96
83 6 0.03
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (81 bp):
CTTTAGCGGCGTTTTTATCTGAGCGCCACTAATGCTCTGGCTTTAGCGGCGTTTTTGTCTAAGCG
CCGCTAATGCTCGGAT
Found at i:40369921 original size:41 final size:40
Alignment explanation
Indices: 40369805--40369949 Score: 114
Period size: 41 Copynumber: 3.5 Consensus size: 40
40369795 TATAGTTGCT
* **
40369805 TTTTTATCTCAGCGCCACTAATCCTCTGGCCTTTAGCGGTG
1 TTTTTATCTAAGCGCCACTAATCCTCT-GCCTTTAGCGACG
* ** * * * *
40369846 TTTTTGTCTAAGCGCTGCTAATGCTCGGATCTTTAGTGACG
1 TTTTTATCTAAGCGCCACTAATCCTCTG-CCTTTAGCGACG
* *
40369887 TTTTTATCTGAGCGCCACTAATTCTCCTGCCTTTAGC-AGCG
1 TTTTTATCTAAGCGCCACTAATCCT-CTGCCTTTAGCGA-CG
*
40369928 TTTGTT-TCTAAGCGCCGCTAAT
1 TTT-TTATCTAAGCGCCACTAAT
40369950 AGTAACAAAA
Statistics
Matches: 80, Mismatches: 20, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
40 2 0.03
41 74 0.93
42 4 0.05
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.38
Consensus pattern (40 bp):
TTTTTATCTAAGCGCCACTAATCCTCTGCCTTTAGCGACG
Found at i:40372783 original size:11 final size:11
Alignment explanation
Indices: 40372767--40372793 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
40372757 TTTGTTTAAT
40372767 TTACTTTCATA
1 TTACTTTCATA
40372778 TTACTTTCATA
1 TTACTTTCATA
40372789 TTACT
1 TTACT
40372794 GGTTGAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.56
Consensus pattern (11 bp):
TTACTTTCATA
Found at i:40374578 original size:21 final size:22
Alignment explanation
Indices: 40374529--40374579 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
40374519 AACATCTTTG
*
40374529 ATATATATATTTATATAAAGTT
1 ATATATATATTTATATAAAATT
*
40374551 TTA-ATATATTTAT-TAAAATT
1 ATATATATATTTATATAAAATT
40374571 ATATATATA
1 ATATATATA
40374580 CTTGAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 8 0.32
21 15 0.60
22 2 0.08
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
ATATATATATTTATATAAAATT
Found at i:40374700 original size:13 final size:15
Alignment explanation
Indices: 40374667--40374707 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 15
40374657 AATAATTTAA
40374667 ATAACTTACATAATAC
1 ATAACTTACAT-ATAC
40374683 ATAACTTACAT-T-C
1 ATAACTTACATATAC
40374696 ATAACTTACATA
1 ATAACTTACATA
40374708 AACTTATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.50
14 1 0.04
16 11 0.46
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAACTTACATATAC
Found at i:40374811 original size:9 final size:9
Alignment explanation
Indices: 40374799--40375041 Score: 314
Period size: 9 Copynumber: 28.3 Consensus size: 9
40374789 ATATAAACAA
40374799 AACTTACAT
1 AACTTACAT
*
40374808 AACTTAAAT
1 AACTTACAT
*
40374817 ATA-TTACAC
1 A-ACTTACAT
40374826 AACTTACAT
1 AACTTACAT
*
40374835 AACCTACAT
1 AACTTACAT
40374844 AA--TACAT
1 AACTTACAT
40374851 AACTTACAT
1 AACTTACAT
40374860 AACTTACAT
1 AACTTACAT
*
40374869 AACCTACAT
1 AACTTACAT
40374878 AA--TACAT
1 AACTTACAT
40374885 AACTTACAT
1 AACTTACAT
40374894 AACTTACAT
1 AACTTACAT
*
40374903 AACCTACAT
1 AACTTACAT
40374912 AA--TACAT
1 AACTTACAT
40374919 AACTTACAT
1 AACTTACAT
40374928 AACTTACAT
1 AACTTACAT
*
40374937 AACCTACAT
1 AACTTACAT
40374946 AA--TACAT
1 AACTTACAT
40374953 AACTTACAT
1 AACTTACAT
40374962 AACTTACAT
1 AACTTACAT
*
40374971 AACCTACAT
1 AACTTACAT
40374980 AA--TACAT
1 AACTTACAT
40374987 AACTTACAT
1 AACTTACAT
40374996 AACTTACAT
1 AACTTACAT
*
40375005 AACCTACAT
1 AACTTACAT
40375014 AA--TACAT
1 AACTTACAT
40375021 AACTTACAT
1 AACTTACAT
40375030 AACTTACAT
1 AACTTACAT
40375039 AAC
1 AAC
40375042 NNNNNNNNNN
Statistics
Matches: 210, Mismatches: 10, Indels: 28
0.85 0.04 0.11
Matches are distributed among these distances:
7 42 0.20
8 1 0.00
9 166 0.79
10 1 0.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (9 bp):
AACTTACAT
Found at i:40374864 original size:34 final size:34
Alignment explanation
Indices: 40374820--40375041 Score: 435
Period size: 34 Copynumber: 6.5 Consensus size: 34
40374810 CTTAAATATA
*
40374820 TTACACAACTTACATAACCTACATAATACATAAC
1 TTACATAACTTACATAACCTACATAATACATAAC
40374854 TTACATAACTTACATAACCTACATAATACATAAC
1 TTACATAACTTACATAACCTACATAATACATAAC
40374888 TTACATAACTTACATAACCTACATAATACATAAC
1 TTACATAACTTACATAACCTACATAATACATAAC
40374922 TTACATAACTTACATAACCTACATAATACATAAC
1 TTACATAACTTACATAACCTACATAATACATAAC
40374956 TTACATAACTTACATAACCTACATAATACATAAC
1 TTACATAACTTACATAACCTACATAATACATAAC
40374990 TTACATAACTTACATAACCTACATAATACATAAC
1 TTACATAACTTACATAACCTACATAATACATAAC
40375024 TTACATAACTTACATAAC
1 TTACATAACTTACATAAC
40375042 NNNNNNNNNN
Statistics
Matches: 187, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
34 187 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (34 bp):
TTACATAACTTACATAACCTACATAATACATAAC
Found at i:40381382 original size:21 final size:21
Alignment explanation
Indices: 40381358--40381403 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
40381348 CTACAACTTA
* *
40381358 AAGCAGATGCGGCAACGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
40381379 AAGCAGAGGCAGCAGCGAGAG
1 AAGCAGAGGCAGCAACGAGAG
40381400 AAGC
1 AAGC
40381404 TTAGGTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.39, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACGAGAG
Found at i:40381410 original size:84 final size:87
Alignment explanation
Indices: 40381311--40381484 Score: 239
Period size: 87 Copynumber: 2.0 Consensus size: 87
40381301 GAGGCAACAT
* *
40381311 GAGAGAAGCTGAGGTTCAA-AAAAG-AT-ATGAACTCCAGCTA-CAACTTAAAGCAGATGCGGCA
1 GAGAGAAGCTGAGGTTCAATAAAAGTATGAAGAACTCCAGC-AGCAACTTAAAGCAGATGCAGCA
40381372 ACGAGAGAAGCAGAGGCAGCAGC
65 ACGAGAGAAGCAGAGGCAGCAGC
* * * *
40381395 GAGAGAAGCTTAGGTTCAATGAAAGTATGAAGAACTCCAGCAGCAGCTTAAAGCAGATGCAGCAG
1 GAGAGAAGCTGAGGTTCAATAAAAGTATGAAGAACTCCAGCAGCAACTTAAAGCAGATGCAGCAA
* *
40381460 CGAGAGAAGCAGAGGCTGTAGC
66 CGAGAGAAGCAGAGGCAGCAGC
40381482 GAG
1 GAG
40381485 GGAATTAAAG
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
84 18 0.23
85 4 0.05
86 3 0.04
87 53 0.68
ACGTcount: A:0.39, C:0.18, G:0.30, T:0.13
Consensus pattern (87 bp):
GAGAGAAGCTGAGGTTCAATAAAAGTATGAAGAACTCCAGCAGCAACTTAAAGCAGATGCAGCAA
CGAGAGAAGCAGAGGCAGCAGC
Found at i:40382124 original size:43 final size:43
Alignment explanation
Indices: 40381837--40382117 Score: 303
Period size: 43 Copynumber: 6.5 Consensus size: 43
40381827 TTTGGGTAAA
* * * * *
40381837 CGCCGCTAAAGAACACGGCCGATAGTGGCGTTTTTCGTATAAG
1 CGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGTATAAG
** *
40381880 CGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGTCCAAT
1 CGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGTATAAG
* * * * **
40381923 CGCCGCTAAAGAACACGGTCTATAGTGACCTTTTTTGTCCAAG
1 CGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGTATAAG
* * * * *
40381966 CGCCGTTAAAGAACATGGTCTATAGTGGCGTTTTATGTACAAA
1 CGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGTATAAG
* * * *
40382009 CGTCGCTAAAAGACCACGATCTATAGTGACGTTTTTTGTAT-AG
1 CGCCGCT-AAAGACCATGGTCTATAGTGGCGTTTTTTGTATAAG
* * *
40382052 CGCCGCTAAAGACTATGGTCTATAGCGGCGTTTTTTGTGTAAG
1 CGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGTATAAG
*
40382095 CGCCGCTAAAGACCATAGTCTAT
1 CGCCGCTAAAGACCATGGTCTAT
40382118 TGCGGCGCTT
Statistics
Matches: 198, Mismatches: 38, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
42 27 0.14
43 144 0.73
44 27 0.14
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (43 bp):
CGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGTATAAG
Found at i:40382306 original size:22 final size:21
Alignment explanation
Indices: 40382261--40382306 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
40382251 ATTTGCGGCG
* *
40382261 CTAAAAAACGCCGCTATAGCC
1 CTAAAAAACGCCGCTAAAGAC
*
40382282 CTAAAAAAGCGCCGCTAAATAC
1 CTAAAAAA-CGCCGCTAAAGAC
40382304 CTA
1 CTA
40382307 TTTTGGTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.41, C:0.30, G:0.13, T:0.15
Consensus pattern (21 bp):
CTAAAAAACGCCGCTAAAGAC
Found at i:40390337 original size:20 final size:20
Alignment explanation
Indices: 40390312--40390351 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
40390302 AATATTTTCT
* *
40390312 AGTAAATCATTTTGCAGAAA
1 AGTAAAACATTTTCCAGAAA
40390332 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTCCAGAAA
40390352 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTCCAGAAA
Found at i:40390358 original size:14 final size:14
Alignment explanation
Indices: 40390335--40390374 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
40390325 GCAGAAAAGT
*
40390335 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
40390349 AAATCATTTTACGG
1 AAAACATTTTACAG
40390363 AAAACATTTTAC
1 AAAACATTTTAC
40390375 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:40390366 original size:34 final size:35
Alignment explanation
Indices: 40390300--40390366 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
40390290 CAAACAGTAG
* * *
40390300 AAAATATTTTCTAGTAAATCATTTTGCAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
40390335 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
40390367 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:40390805 original size:14 final size:15
Alignment explanation
Indices: 40390770--40390808 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
40390760 TCTTTATATA
40390770 TAATATTTATATGTC
1 TAATATTTATATGTC
* *
40390785 AAATATTTAT-TTTC
1 TAATATTTATATGTC
40390799 TAATATTTAT
1 TAATATTTAT
40390809 GGTTATGGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (15 bp):
TAATATTTATATGTC
Found at i:40394200 original size:23 final size:23
Alignment explanation
Indices: 40394169--40394224 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
40394159 GTCCAAAGCT
*
40394169 AAATGTAAAATTATCGAAACCTA
1 AAATCTAAAATTATCGAAACCTA
* * *
40394192 AAATCTAAAAATTATTGATATCTA
1 AAATCT-AAAATTATCGAAACCTA
*
40394216 AATTCTAAA
1 AAATCTAAA
40394225 TAAAAACCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (23 bp):
AAATCTAAAATTATCGAAACCTA
Found at i:40394216 original size:24 final size:24
Alignment explanation
Indices: 40394175--40394224 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
40394165 AGCTAAATGT
40394175 AAAATTATCGAAACCTAAAATCTA
1 AAAATTATCGAAACCTAAAATCTA
* * * *
40394199 AAAATTATTGATATCTAAATTCTA
1 AAAATTATCGAAACCTAAAATCTA
40394223 AA
1 AA
40394225 TAAAAACCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.32
Consensus pattern (24 bp):
AAAATTATCGAAACCTAAAATCTA
Found at i:40394655 original size:21 final size:21
Alignment explanation
Indices: 40394616--40394655 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
40394606 CCGTTCACTT
*
40394616 TTGCTTCTTCCTTTGTTTTCC
1 TTGCTTCTTCCTTTCTTTTCC
40394637 TTGCTTC-TCCATTTCTTTT
1 TTGCTTCTTCC-TTTCTTTT
40394656 ACCAAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.03, C:0.28, G:0.07, T:0.62
Consensus pattern (21 bp):
TTGCTTCTTCCTTTCTTTTCC
Found at i:40395632 original size:23 final size:22
Alignment explanation
Indices: 40395575--40395633 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 22
40395565 GTTATTTAAA
* *
40395575 CTCCATTTTTTTTTCTTTTCTTT
1 CTCCA-TTTCTTTTCTTTGCTTT
* * *
40395598 CTTCACTACTTTTCTTTGCTCTT
1 CTCCATTTCTTTTCTTTGCT-TT
40395621 CTCCATTTCTTTT
1 CTCCATTTCTTTT
40395634 TGGTTGGTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.07, C:0.27, G:0.02, T:0.64
Consensus pattern (22 bp):
CTCCATTTCTTTTCTTTGCTTT
Found at i:40399603 original size:17 final size:17
Alignment explanation
Indices: 40399581--40399633 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
40399571 TATATTTTAA
40399581 AACAAAATAAATTCAAT
1 AACAAAATAAATTCAAT
* *
40399598 AAC---A-AAAGTCACT
1 AACAAAATAAATTCAAT
40399611 -ACAAAATAAATTCAAT
1 AACAAAATAAATTCAAT
40399627 AACAAAA
1 AACAAAA
40399634 GTCACTTTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 10
0.66 0.10 0.24
Matches are distributed among these distances:
12 2 0.07
13 7 0.26
14 1 0.04
15 1 0.04
16 7 0.26
17 9 0.33
ACGTcount: A:0.64, C:0.15, G:0.02, T:0.19
Consensus pattern (17 bp):
AACAAAATAAATTCAAT
Found at i:40399624 original size:29 final size:29
Alignment explanation
Indices: 40399582--40399639 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
40399572 ATATTTTAAA
40399582 ACAAAATAAATTCAATAACAAAAGTCACT
1 ACAAAATAAATTCAATAACAAAAGTCACT
40399611 ACAAAATAAATTCAATAACAAAAGTCACT
1 ACAAAATAAATTCAATAACAAAAGTCACT
40399640 TTGATAACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.59, C:0.17, G:0.03, T:0.21
Consensus pattern (29 bp):
ACAAAATAAATTCAATAACAAAAGTCACT
Found at i:40417765 original size:23 final size:23
Alignment explanation
Indices: 40417737--40417793 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
40417727 GAAACTAAAA
*
40417737 TTTTCTTTTCTCTTACCTTGTAT
1 TTTTCTTTTATCTTACCTTGTAT
40417760 TTTTCTTTTATCTTACCTTGTAT
1 TTTTCTTTTATCTTACCTTGTAT
40417783 TTTTCTTTTAT
1 TTTTCTTTTAT
40417794 TGTCTTCCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.11, C:0.18, G:0.04, T:0.68
Consensus pattern (23 bp):
TTTTCTTTTATCTTACCTTGTAT
Found at i:40418641 original size:27 final size:27
Alignment explanation
Indices: 40418604--40418730 Score: 119
Period size: 27 Copynumber: 4.7 Consensus size: 27
40418594 ACATGCAAGA
*
40418604 AAATGGAAGCCTTTGTGGAAATCTATG
1 AAATGAAAGCCTTTGTGGAAATCTATG
* * *
40418631 AAATGAAAGCCTTTGTGGCAATATATT
1 AAATGAAAGCCTTTGTGGAAATCTATG
* * *
40418658 AAATTAAAGCCCTTGTGGAAATTTATG
1 AAATGAAAGCCTTTGTGGAAATCTATG
* * **
40418685 AAATGGAAGCCTTCGTGGCGATCTATGG
1 AAATGAAAGCCTTTGTGGAAATCTAT-G
* * *
40418713 AAAGGAACGCCTTCGTGG
1 AAATGAAAGCCTTTGTGG
40418731 TGCATTCTAT
Statistics
Matches: 80, Mismatches: 19, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
27 64 0.80
28 16 0.20
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (27 bp):
AAATGAAAGCCTTTGTGGAAATCTATG
Found at i:40418902 original size:27 final size:28
Alignment explanation
Indices: 40418870--40418950 Score: 94
Period size: 27 Copynumber: 2.9 Consensus size: 28
40418860 TAACTATGAC
* *
40418870 AAACTCTGAAGGACTAGTAGGTATGGT-
1 AAACTCTGAAGGAATAGTACGTATGGTG
*
40418897 AAACTCTGAAAGAATAGTACGTATGGTG
1 AAACTCTGAAGGAATAGTACGTATGGTG
* *
40418925 AAA-TTTGAAGGAATAAGTATGTATGG
1 AAACTCTGAAGGAAT-AGTACGTATGG
40418951 CGAGGTCTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 33 0.72
28 13 0.28
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.27
Consensus pattern (28 bp):
AAACTCTGAAGGAATAGTACGTATGGTG
Found at i:40421522 original size:27 final size:27
Alignment explanation
Indices: 40421492--40421545 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
40421482 GCTAGGCCAT
* * *
40421492 CTGGCGATCCTTGTTTTGCCAAACCCG
1 CTGGCGATCCTTGCTTCGACAAACCCG
40421519 CTGGCGATCCTTGCTTCGACAAACCCG
1 CTGGCGATCCTTGCTTCGACAAACCCG
40421546 TTGCCGATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.17, C:0.35, G:0.22, T:0.26
Consensus pattern (27 bp):
CTGGCGATCCTTGCTTCGACAAACCCG
Found at i:40421553 original size:27 final size:27
Alignment explanation
Indices: 40421496--40421553 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
40421486 GGCCATCTGG
* * * *
40421496 CGATCCTTGTTTTGCCAAACCCGCTGG
1 CGATCCTTGCTTCGACAAACCCGCTGC
*
40421523 CGATCCTTGCTTCGACAAACCCGTTGC
1 CGATCCTTGCTTCGACAAACCCGCTGC
40421550 CGAT
1 CGAT
40421554 TATAGTTCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.17, C:0.34, G:0.21, T:0.28
Consensus pattern (27 bp):
CGATCCTTGCTTCGACAAACCCGCTGC
Found at i:40421808 original size:55 final size:54
Alignment explanation
Indices: 40421716--40421832 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 54
40421706 ATAAAAAATG
* * *
40421716 AAATGAAATTGGACCTCACAACAACGCCTTCACAACAAAATGTGACATAAATGAA
1 AAATGAAATTGGACATCACAACAACGCCTTCAAAACAAAATGTAACATAAA-GAA
* * **
40421771 GAATGAAATTGGACATCATAATTA-GCCTTCTAAAACAAAATGTAACATAAAGAA
1 AAATGAAATTGGACATCACAACAACGCCTTC-AAAACAAAATGTAACATAAAGAA
40421825 AAATGAAA
1 AAATGAAA
40421833 CCAAACCTCA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 16 0.30
55 37 0.70
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (54 bp):
AAATGAAATTGGACATCACAACAACGCCTTCAAAACAAAATGTAACATAAAGAA
Found at i:40421930 original size:59 final size:59
Alignment explanation
Indices: 40421867--40422024 Score: 175
Period size: 54 Copynumber: 2.8 Consensus size: 59
40421857 AAATAGAATG
40421867 CAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAAAATA
1 CAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAAAATA
* * * ** *
40421926 CAACATAAATG-----GAAATGAAATTGGA-CTTCATAACCAGGCCTCTAAAATAGGATG
1 CAACATAAATGAAAATGAAATGAAATTGGACCTT-AAAACTAGGCCTCTAAAACAAAATA
* * * *
40421980 CAACATAAATGAAAATGAAATGAAACTAGACCTCACAACTAGGCC
1 CAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCC
40422025 CCTGGAAACA
Statistics
Matches: 81, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
53 3 0.04
54 44 0.54
59 32 0.40
60 2 0.02
ACGTcount: A:0.48, C:0.18, G:0.15, T:0.20
Consensus pattern (59 bp):
CAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAAAATA
Done.