genome.fa.s10.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  12  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3703145--3703191	20	2.4	19	76	16	51	53	0	6	40	1.27
3705761--3705823	25	2.5	25	89	0	90	19	28	20	31	1.97
3705785--3705842	25	2.3	25	84	0	71	20	29	22	27	1.99
3709639--3709692	27	2.1	26	86	6	74	62	5	5	25	1.39
3713358--3713406	18	2.8	18	84	9	57	40	0	0	59	0.98
3717858--3717908	20	2.7	18	77	14	57	60	0	7	31	1.25
3717829--3717892	31	2.1	31	85	5	85	62	1	4	31	1.25
3718397--3718468	37	1.9	37	97	0	135	51	20	19	8	1.72
3719172--3719199	2	14.0	2	100	0	56	50	0	0	50	1.00
3725803--3725955	41	3.6	43	78	7	134	28	19	21	30	1.98
3726264--3726486	88	2.5	88	92	0	356	26	26	21	25	2.00
3726327--3726469	43	3.3	43	72	3	151	23	28	20	26	1.99
3726307--3726442	44	3.1	44	71	4	139	26	27	19	26	1.99
3726343--3726486	44	3.3	44	72	3	155	29	25	21	23	1.99
3727962--3728028	25	2.7	26	77	15	77	55	2	5	35	1.40
3735756--3735851	31	3.1	31	93	3	165	45	13	8	32	1.73
3738489--3738513	11	2.3	11	100	0	50	32	20	16	32	1.94
3743947--3743983	12	3.1	12	96	0	65	35	2	8	54	1.44
3753447--3753490	2	22.0	2	100	0	88	50	0	0	50	1.00
3756012--3756108	49	2.0	49	97	0	185	38	10	19	31	1.85
3757205--3757257	26	2.0	27	85	7	72	49	7	1	41	1.42
3758795--3758871	36	2.1	37	97	2	147	53	16	7	22	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3759084--3759269	100	1.9	99	89	3	293	44	14	15	25	1.85
3759065--3759269	48	4.2	48	83	8	270	42	14	16	26	1.86
3759188--3759269	23	3.5	23	73	6	92	36	15	18	29	1.92
3760095--3760213	60	2.0	60	93	0	202	31	5	33	28	1.81
3785911--3785961	25	2.0	25	84	3	66	37	0	1	60	1.08
3786764--3787052	125	2.3	125	93	0	497	31	21	20	26	1.98
3792975--3793017	18	2.4	18	88	0	59	44	9	27	18	1.80
3801263--3801320	24	2.3	26	82	14	77	46	0	1	51	1.11
3801265--3801383	61	2.0	61	88	3	177	42	2	1	52	1.24
3807093--3807126	15	2.3	15	94	0	59	64	17	0	17	1.29
3807906--3808019	19	5.7	21	86	5	82	37	16	7	37	1.78
3807932--3808023	19	4.8	19	93	0	157	36	16	8	38	1.79
3807925--3808023	38	2.7	38	95	3	175	36	17	8	38	1.79
3810710--3810808	43	2.3	42	86	8	130	37	11	29	22	1.88
3812857--3812941	37	2.3	37	85	6	109	34	40	9	16	1.81
3819728--3819752	9	2.8	9	100	0	50	40	24	0	36	1.55
3825781--3825816	6	6.0	6	100	0	72	0	50	16	33	1.46
3825932--3825984	22	2.3	23	87	12	74	41	1	0	56	1.10
3850806--3850870	2	32.5	2	90	0	103	47	47	3	1	1.27
3855572--3855596	10	2.5	10	100	0	50	44	0	0	56	0.99
3855903--3855964	27	2.3	28	83	10	76	27	16	8	48	1.74
3859736--3859795	24	2.5	24	84	12	88	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3860585--3860612	14	2.0	14	100	0	56	57	0	21	21	1.41
3861055--3861272	70	3.2	70	63	24	181	39	9	5	45	1.61
3860659--3861349	137	5.1	137	93	3	1133	39	8	6	45	1.60
3860659--3861349	271	2.5	270	91	3	1125	39	8	6	45	1.60
3870971--3871010	2	20.0	2	100	0	80	50	0	0	50	1.00
3872394--3872432	2	19.5	2	100	0	78	48	0	0	51	1.00
3873558--3873603	9	4.9	9	79	10	56	23	0	6	69	1.11
3873583--3873622	16	2.4	16	87	4	53	27	0	0	72	0.85
3873894--3873945	19	2.6	20	78	9	61	40	1	5	51	1.37
3875088--3875237	62	2.5	60	79	11	164	38	6	14	42	1.70
3887575--3887613	16	2.4	16	82	0	51	43	2	30	23	1.67
3887597--3887687	44	2.0	45	87	6	132	31	5	28	34	1.80
3891561--3891588	14	2.0	14	100	0	56	64	0	28	7	1.20
3891543--3891608	18	3.7	18	72	25	59	62	1	27	9	1.34
3893006--3893034	15	1.9	15	100	0	58	20	13	17	48	1.81
3895666--3895702	9	4.1	9	89	0	56	45	10	10	32	1.74
3906716--3906740	13	1.9	13	100	0	50	8	12	24	56	1.62
3908392--3908455	27	2.4	27	84	5	76	23	21	28	26	1.99
3909279--3909330	14	3.7	14	84	5	61	36	0	13	50	1.42
3909698--3909736	6	6.5	6	93	0	69	69	15	15	0	1.20
3912012--3912141	11	11.6	11	67	19	56	47	23	7	21	1.76
3912004--3912227	22	10.0	22	75	8	182	45	22	8	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3911978--3912119	68	2.1	69	89	4	216	47	21	8	22	1.77
3911997--3912227	90	2.6	90	92	0	381	45	22	9	22	1.81
3912821--3912942	42	2.9	41	81	6	136	32	24	16	26	1.96
3919952--3920045	35	2.7	36	81	4	113	34	24	25	15	1.95
3919982--3920196	35	5.9	37	73	11	156	31	22	24	21	1.98
3920016--3920197	74	2.5	74	89	1	276	31	22	24	21	1.98
3921212--3921262	3	17.0	3	100	0	102	33	0	0	66	0.92
3925071--3925111	21	2.0	21	85	4	57	34	2	2	60	1.23
3926138--3926431	156	1.9	152	82	8	371	38	6	10	44	1.65
3929631--3929727	42	2.3	42	90	0	158	26	26	10	36	1.89
3930598--3930631	17	2.1	17	88	5	52	32	17	0	50	1.47
3931963--3932075	49	2.3	49	80	6	131	27	13	25	33	1.93
3932060--3932168	49	2.2	49	79	4	114	28	17	24	29	1.97
3937193--3937287	37	2.6	37	79	3	102	32	11	16	38	1.85
3939472--3939514	20	2.2	20	95	0	77	60	11	11	16	1.59
3941551--3941717	50	3.3	50	73	16	182	43	6	5	43	1.55
3948111--3948135	7	3.6	7	100	0	50	12	0	0	88	0.53
3948168--3948218	11	4.5	11	76	13	59	31	1	1	64	1.15
3948179--3948260	40	2.2	38	86	8	114	32	2	1	63	1.15
3948139--3948248	51	2.1	53	91	5	179	33	2	0	62	1.15
3948150--3948222	9	7.4	9	75	17	58	27	1	1	69	1.04
3948168--3948218	23	2.3	22	86	10	68	31	1	1	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3948143--3948265	51	2.4	50	85	9	160	31	2	0	65	1.12
3951112--3951178	28	2.4	28	92	0	107	23	31	13	31	1.93
3951187--3951231	18	2.5	18	92	7	74	17	24	31	26	1.97
3953572--3953718	66	2.2	66	87	2	206	18	10	28	42	1.84
3965928--3966124	48	4.1	48	76	2	207	22	28	21	27	1.99
3965930--3966105	96	1.8	96	83	0	235	21	30	21	26	1.99
3967795--3967995	48	4.2	48	80	3	215	28	20	27	23	1.99
3969577--3969603	13	2.1	13	100	0	54	55	22	0	22	1.44
3978281--3978469	91	2.1	91	82	5	231	28	6	20	43	1.77
3979489--3979602	43	2.7	42	79	15	112	25	19	26	28	1.98
3979751--3979846	36	2.7	36	90	1	140	30	7	19	42	1.78
3985765--3985824	23	2.4	26	83	10	81	61	0	5	33	1.17
3986562--3986610	16	3.1	16	90	0	80	38	8	32	20	1.82
3986590--3986678	45	2.0	44	89	6	135	32	5	28	33	1.80
3986824--3986865	15	2.7	16	82	14	52	52	2	0	45	1.13
3986833--3986874	15	2.9	15	82	10	52	52	0	0	47	1.00
3992743--3992799	5	11.4	5	80	0	69	40	1	0	57	1.09
3992743--3992789	15	3.1	15	90	0	76	36	2	0	61	1.08
3993890--3993943	23	2.4	23	90	6	85	25	24	18	31	1.97
3993891--3993977	21	4.1	21	79	4	86	21	21	20	35	1.96
3997659--3997854	56	3.5	56	78	6	202	28	21	20	30	1.98
4002188--4002323	50	2.7	50	86	5	193	29	27	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4012250--4012276	11	2.5	11	100	0	54	25	0	7	66	1.17
4013603--4013685	25	3.4	24	83	5	96	22	26	22	27	1.99
4014341--4014387	24	1.9	25	83	12	62	21	4	31	42	1.72
4030647--4030796	72	2.1	71	96	3	282	52	4	2	40	1.36
4043008--4043054	20	2.3	20	88	0	67	55	2	10	31	1.46
4043038--4043071	16	2.1	17	88	5	52	52	0	14	32	1.42
4044963--4044988	6	4.3	6	100	0	52	19	0	0	80	0.71
4056990--4057090	43	2.4	42	85	5	132	35	10	30	22	1.89
4058020--4058052	2	16.5	2	93	0	57	48	0	3	48	1.17
4058133--4058876	373	2.0	370	92	2	1235	36	7	17	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136