Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 126 of 136
Found at i:43111466 original size:38 final size:38
Alignment explanation
Indices: 43111430--43111532 Score: 160
Period size: 38 Copynumber: 2.8 Consensus size: 38
43111420 GAAAGAAAGG
43111430 AAGAAAGAAAAAGAA-G---GAAAAGGAAAGGAGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
*
43111464 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGGGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
*
43111502 AAGAAAGAAAAATAAGGAAAGAAAAGGAAAG
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAG
43111533 AAGAAGAGAA
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
34 15 0.24
35 1 0.02
38 47 0.75
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (38 bp):
AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
Found at i:43111493 original size:28 final size:28
Alignment explanation
Indices: 43111409--43111494 Score: 88
Period size: 34 Copynumber: 3.0 Consensus size: 28
43111399 AGAGGGGAAG
*
43111409 AAGAAGAAGAA-GAAAG-AAAGG-AAGA
1 AAGAAAAAGAAGGAAAGAAAAGGAAAGA
43111434 AAGAAAAAGAAGGAAAAGGAAAGGAGAGGAAAGA
1 AAGAAAAAGAAGG-AAA-G-AA--A-AGGAAAGA
43111468 AAGAAAAAGAAGGAAAGAAAAGGAAAG
1 AAGAAAAAGAAGGAAAGAAAAGGAAAG
43111495 GGGAGGAAAG
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
25 10 0.20
26 1 0.02
27 3 0.06
28 8 0.16
29 1 0.02
30 1 0.02
31 2 0.04
32 2 0.04
33 6 0.12
34 17 0.33
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (28 bp):
AAGAAAAAGAAGGAAAGAAAAGGAAAGA
Found at i:43115472 original size:27 final size:27
Alignment explanation
Indices: 43115437--43115497 Score: 104
Period size: 27 Copynumber: 2.2 Consensus size: 27
43115427 CAACGGGAAA
43115437 CCTTGGTTTGGTGCCGCCAACAGGGTTC
1 CCTT-GTTTGGTGCCGCCAACAGGGTTC
*
43115465 CCTTGTTTGGTGCCGCCAACAGTGTTC
1 CCTTGTTTGGTGCCGCCAACAGGGTTC
43115492 CCTTGT
1 CCTTGT
43115498 CCCAGGGAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.10, C:0.30, G:0.28, T:0.33
Consensus pattern (27 bp):
CCTTGTTTGGTGCCGCCAACAGGGTTC
Found at i:43115607 original size:28 final size:28
Alignment explanation
Indices: 43115540--43115613 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
43115530 TTTCTGTTTT
43115540 TTTTAT-ATATTTTGGTAAACAAAAAAA
1 TTTTATAATATTTTGGTAAACAAAAAAA
* *
43115567 -ATTATATATATTTTGGTAAATAAAAAAA
1 TTTTATA-ATATTTTGGTAAACAAAAAAA
* *
43115595 TTTTATAACATTTTAGTAA
1 TTTTATAATATTTTGGTAA
43115614 TTTTTAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 4 0.10
28 30 0.77
29 5 0.13
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (28 bp):
TTTTATAATATTTTGGTAAACAAAAAAA
Found at i:43116226 original size:29 final size:29
Alignment explanation
Indices: 43116170--43116226 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
43116160 TACCCTAAAA
* * * *
43116170 TTTGAGTGACCAAATTATAAATATTTTAT
1 TTTGAGTGACCAAAATAAAAACACTTTAT
*
43116199 TTTGAGTGACTAAAATAAAAACACTTTA
1 TTTGAGTGACCAAAATAAAAACACTTTA
43116227 AAATTTAAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.39
Consensus pattern (29 bp):
TTTGAGTGACCAAAATAAAAACACTTTAT
Found at i:43142632 original size:20 final size:20
Alignment explanation
Indices: 43142595--43142633 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
43142585 AATCACTCTA
* *
43142595 TTTCTCGGCTCCCGAGCATG
1 TTTCTCGGCTCACAAGCATG
*
43142615 TTTCTCGGGTCACAAGCAT
1 TTTCTCGGCTCACAAGCAT
43142634 TTGATTCTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (20 bp):
TTTCTCGGCTCACAAGCATG
Found at i:43142668 original size:3 final size:3
Alignment explanation
Indices: 43142660--43142686 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
43142650 ATTTTGCAAT
43142660 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
43142687 GTATAATCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:43153027 original size:37 final size:37
Alignment explanation
Indices: 43152977--43153052 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
43152967 AATAGGACCA
43152977 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
1 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
*
43153014 AAATATTATAAATAGATAATGTTATTGATTATTTTAT
1 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
43153051 AA
1 AA
43153053 TAAAAAATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.47
Consensus pattern (37 bp):
AAATATTATAAATAGATAATGTTATTAATTATTTTAT
Found at i:43153711 original size:3 final size:3
Alignment explanation
Indices: 43153705--43153768 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
43153695 TATTAGTATT
43153705 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
43153753 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
43153769 GTTTATTTAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:43154414 original size:13 final size:13
Alignment explanation
Indices: 43154396--43154420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43154386 AACAATTTTT
43154396 TAATATAAATTTC
1 TAATATAAATTTC
43154409 TAATATAAATTT
1 TAATATAAATTT
43154421 AGTACTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATATAAATTTC
Found at i:43155216 original size:16 final size:17
Alignment explanation
Indices: 43155195--43155229 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
43155185 AAGCTTTAAA
*
43155195 ATGTTGGA-ACTTACCT
1 ATGTTGGACACATACCT
43155211 ATGTTGGACACATACCT
1 ATGTTGGACACATACCT
43155228 AT
1 AT
43155230 ATTAGACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (17 bp):
ATGTTGGACACATACCT
Found at i:43164978 original size:213 final size:214
Alignment explanation
Indices: 43164602--43165042 Score: 850
Period size: 213 Copynumber: 2.1 Consensus size: 214
43164592 TTTATATATA
43164602 AAAAAATATTTTAATAATTTTTCTTCTAAGTAAATATCGAGCTAACTTATGATTTAAGAGTTTAA
1 AAAAAATA-TTTAATAATTTTTCTTCTAAGTAAATATCGAGCTAACTTATGATTTAAGAGTTTAA
43164667 ATTTGTTTTAAGTATTAAAATGAAAAATCTAAATGCTCAAATTAATGCCCAACCTTTTAAGGATT
65 ATTTGTTTTAAGTATTAAAATGAAAAATCTAAATGCTCAAATTAATGCCCAACCTTTTAAGGATT
43164732 ACTTGGTCAAACATTTTGAAAGTGTTCAAAATATTTGGCCTTGGCTGATCTATTTTGAAATGTTT
130 ACTTGGTCAAACATTTTGAAAGTGTTCAAAATATTTGGCCTTGGCTGATCTATTTTGAAATGTTT
43164797 AACCTTTATTTAACCTC-TT
195 AACCTTTATTTAACCTCTTT
43164816 AAAAAATATTTAATAATTTTTCTTCTAAGTAAATATCGAGCTAACTTATGATTTAAGAGTTTAAA
1 AAAAAATATTTAATAATTTTTCTTCTAAGTAAATATCGAGCTAACTTATGATTTAAGAGTTTAAA
43164881 TTTGTTTTAAGTATTAAAATGAAAAATCTAAATGCTCAAATTAATGCCCAACCTTTTAAGGATTA
66 TTTGTTTTAAGTATTAAAATGAAAAATCTAAATGCTCAAATTAATGCCCAACCTTTTAAGGATTA
43164946 CTTGGTCAAACATTTTGAAAGTGTTCAAAATATTTGGCCTTGGCTGATCTATTTTGAAATGTTTA
131 CTTGGTCAAACATTTTGAAAGTGTTCAAAATATTTGGCCTTGGCTGATCTATTTTGAAATGTTTA
43165011 ACCTTTATTTAACCTCTTT
196 ACCTTTATTTAACCTCTTT
43165030 AATAAAAT-TTTAA
1 AA-AAAATATTTAA
43165043 CTCTTAGTAA
Statistics
Matches: 225, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
213 203 0.90
214 17 0.08
215 5 0.02
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.41
Consensus pattern (214 bp):
AAAAAATATTTAATAATTTTTCTTCTAAGTAAATATCGAGCTAACTTATGATTTAAGAGTTTAAA
TTTGTTTTAAGTATTAAAATGAAAAATCTAAATGCTCAAATTAATGCCCAACCTTTTAAGGATTA
CTTGGTCAAACATTTTGAAAGTGTTCAAAATATTTGGCCTTGGCTGATCTATTTTGAAATGTTTA
ACCTTTATTTAACCTCTTT
Found at i:43166586 original size:20 final size:21
Alignment explanation
Indices: 43166563--43166601 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
43166553 CATTTATCAT
*
43166563 ATTTT-ATTATTTTACTTTCC
1 ATTTTCATCATTTTACTTTCC
*
43166583 ATTTTCATCATTTTTCTTT
1 ATTTTCATCATTTTACTTT
43166602 ATTTAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.67
Consensus pattern (21 bp):
ATTTTCATCATTTTACTTTCC
Found at i:43181302 original size:137 final size:137
Alignment explanation
Indices: 43181056--43181330 Score: 550
Period size: 137 Copynumber: 2.0 Consensus size: 137
43181046 ATAGGAATAA
43181056 AAAGAAATGTCATATAGTACAAACCATGAATAAACTAAAAGATAGAGAGAGAAAGATAAATTGAC
1 AAAGAAATGTCATATAGTACAAACCATGAATAAACTAAAAGATAGAGAGAGAAAGATAAATTGAC
43181121 TGAAAGTGCAACCCTAGAATGCTGAAATTTGTGTCCTAACATTGCCATCATCAAATCAACTTGAC
66 TGAAAGTGCAACCCTAGAATGCTGAAATTTGTGTCCTAACATTGCCATCATCAAATCAACTTGAC
43181186 GATGAAC
131 GATGAAC
43181193 AAAGAAATGTCATATAGTACAAACCATGAATAAACTAAAAGATAGAGAGAGAAAGATAAATTGAC
1 AAAGAAATGTCATATAGTACAAACCATGAATAAACTAAAAGATAGAGAGAGAAAGATAAATTGAC
43181258 TGAAAGTGCAACCCTAGAATGCTGAAATTTGTGTCCTAACATTGCCATCATCAAATCAACTTGAC
66 TGAAAGTGCAACCCTAGAATGCTGAAATTTGTGTCCTAACATTGCCATCATCAAATCAACTTGAC
43181323 GATGAAC
131 GATGAAC
43181330 A
1 A
43181331 TTAATCAGCC
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 138 1.00
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.23
Consensus pattern (137 bp):
AAAGAAATGTCATATAGTACAAACCATGAATAAACTAAAAGATAGAGAGAGAAAGATAAATTGAC
TGAAAGTGCAACCCTAGAATGCTGAAATTTGTGTCCTAACATTGCCATCATCAAATCAACTTGAC
GATGAAC
Found at i:43194713 original size:30 final size:31
Alignment explanation
Indices: 43194650--43194713 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
43194640 AACTTGTTTA
*
43194650 TTGTTAATTTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTTGTTATTATTTTAGAAGCAT
*
43194681 TTGTTAA-TTTTGTTATTATTTTAGAAGTAT
1 TTGTTAATTTTTGTTATTATTTTAGAAGCAT
43194711 TTG
1 TTG
43194714 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.23, C:0.02, G:0.16, T:0.59
Consensus pattern (31 bp):
TTGTTAATTTTTGTTATTATTTTAGAAGCAT
Found at i:43195843 original size:17 final size:17
Alignment explanation
Indices: 43195808--43195843 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
43195798 TTTAAAGTGT
*
43195808 AATTCTAAAAAAATTAA
1 AATTCTAAAAAAATGAA
*
43195825 AATTCTAAAAATATGAA
1 AATTCTAAAAAAATGAA
43195842 AA
1 AA
43195844 ATCTTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.28
Consensus pattern (17 bp):
AATTCTAAAAAAATGAA
Found at i:43196294 original size:12 final size:12
Alignment explanation
Indices: 43196277--43196302 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
43196267 TAATTTTGAT
43196277 ATTATTATTATA
1 ATTATTATTATA
43196289 ATTATTATTATA
1 ATTATTATTATA
43196301 AT
1 AT
43196303 ATGTTAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTATTATTATA
Found at i:43196791 original size:12 final size:12
Alignment explanation
Indices: 43196774--43196799 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
43196764 TAATTTTGAT
43196774 ATTATTATTATA
1 ATTATTATTATA
43196786 ATTATTATTATA
1 ATTATTATTATA
43196798 AT
1 AT
43196800 ATGTTAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTATTATTATA
Found at i:43196823 original size:497 final size:497
Alignment explanation
Indices: 43195889--43196882 Score: 1979
Period size: 497 Copynumber: 2.0 Consensus size: 497
43195879 TGAAACTATA
43195889 AAAAAAAAAATTTTTAATTTAGAAGCATATAAAATGTAATTGCCCGTTTAAATTGTAGGAGCCGC
1 AAAAAAAAAATTTTTAATTTAGAAGCATATAAAATGTAATTGCCCGTTTAAATTGTAGGAGCCGC
43195954 ATTCTGCAATTGGGCCTCGTTGGATCAGGTCCGGTTCGATGCTCTCCAACTAAAAAACAAGAGCT
66 ATTCTGCAATTGGGCCTCGTTGGATCAGGTCCGGTTCGATGCTCTCCAACTAAAAAACAAGAGCT
43196019 TTCGAAATAGACCAACCGGAAGATCCGCAGACTGGAATTGAGATTCTCGCTGGACGAAGAGCAAC
131 TTCGAAATAGACCAACCGGAAGATCCGCAGACTGGAATTGAGATTCTCGCTGGACGAAGAGCAAC
43196084 GAACCCTAGCTAGTTTGCTGAGTTAGATTGGCCTAAGAAGGCTCAACCAACCTCTGCTTTTACTC
196 GAACCCTAGCTAGTTTGCTGAGTTAGATTGGCCTAAGAAGGCTCAACCAACCTCTGCTTTTACTC
43196149 CGGTAATTGACTCTCGTCGGGTCCCCTCCACCCTTCCTACCTCTCAATTCTTTGGTACAATGTCT
261 CGGTAATTGACTCTCGTCGGGTCCCCTCCACCCTTCCTACCTCTCAATTCTTTGGTACAATGTCT
43196214 TCATCTCCCCATTGCTTACGTTTCTATCTTGATTTCTTTTGGGGATTATCGTTTAATTTTGATAT
326 TCATCTCCCCATTGCTTACGTTTCTATCTTGATTTCTTTTGGGGATTATCGTTTAATTTTGATAT
43196279 TATTATTATAATTATTATTATAATATGTTAAAGATACTTTCTGTAATAGGGGTTGGATTTAAAAA
391 TATTATTATAATTATTATTATAATATGTTAAAGATACTTTCTGTAATAGGGGTTGGATTTAAAAA
43196344 GAGAGGGGGCGGGGGGGGGGGGAACTAGGAAAAAAAATGTAT
456 GAGAGGGGGCGGGGGGGGGGGGAACTAGGAAAAAAAATGTAT
43196386 AAAAAAAAAATTTTTAATTTAGAAGCATATAAAATGTAATTGCCCGTTTAAATTGTAGGAGCCGC
1 AAAAAAAAAATTTTTAATTTAGAAGCATATAAAATGTAATTGCCCGTTTAAATTGTAGGAGCCGC
43196451 ATTCTGCAATTGGGCCTCGTTGGATCAGGTCCGGTTCGATGCTCTCCAACTAAAAAACAAGAGCT
66 ATTCTGCAATTGGGCCTCGTTGGATCAGGTCCGGTTCGATGCTCTCCAACTAAAAAACAAGAGCT
43196516 TTCGAAATAGACCAACCGGAAGATCCGCAGACTGGAATTGAGATTCTCGCTGGACGAAGAGCAAC
131 TTCGAAATAGACCAACCGGAAGATCCGCAGACTGGAATTGAGATTCTCGCTGGACGAAGAGCAAC
43196581 GAACCCTAGCTAGTTTGCTGAGTTAGATTGGCCTAAGAAGGCTCAACCAACCTCTGCTTTTACTC
196 GAACCCTAGCTAGTTTGCTGAGTTAGATTGGCCTAAGAAGGCTCAACCAACCTCTGCTTTTACTC
43196646 CGGTAATTGACTCTCGTCGGGTCCCCTCCACCCTTCCTACCTCTCAATTCTTTGGTACAATGTCT
261 CGGTAATTGACTCTCGTCGGGTCCCCTCCACCCTTCCTACCTCTCAATTCTTTGGTACAATGTCT
43196711 TCATCTCCCCATTGCTTACGTTTCTATCTTGATTTCTTTTGGGGATTATCGTTTAATTTTGATAT
326 TCATCTCCCCATTGCTTACGTTTCTATCTTGATTTCTTTTGGGGATTATCGTTTAATTTTGATAT
43196776 TATTATTATAATTATTATTATAATATGTTAAAGATACTTTCTGTAATAGGGGTTGGATTTAAAAA
391 TATTATTATAATTATTATTATAATATGTTAAAGATACTTTCTGTAATAGGGGTTGGATTTAAAAA
*
43196841 GAGAGGGGGCGGGGGGGGGGGGAACTAGGAAAAACAATGTAT
456 GAGAGGGGGCGGGGGGGGGGGGAACTAGGAAAAAAAATGTAT
43196883 TTTCACGGGG
Statistics
Matches: 496, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
497 496 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (497 bp):
AAAAAAAAAATTTTTAATTTAGAAGCATATAAAATGTAATTGCCCGTTTAAATTGTAGGAGCCGC
ATTCTGCAATTGGGCCTCGTTGGATCAGGTCCGGTTCGATGCTCTCCAACTAAAAAACAAGAGCT
TTCGAAATAGACCAACCGGAAGATCCGCAGACTGGAATTGAGATTCTCGCTGGACGAAGAGCAAC
GAACCCTAGCTAGTTTGCTGAGTTAGATTGGCCTAAGAAGGCTCAACCAACCTCTGCTTTTACTC
CGGTAATTGACTCTCGTCGGGTCCCCTCCACCCTTCCTACCTCTCAATTCTTTGGTACAATGTCT
TCATCTCCCCATTGCTTACGTTTCTATCTTGATTTCTTTTGGGGATTATCGTTTAATTTTGATAT
TATTATTATAATTATTATTATAATATGTTAAAGATACTTTCTGTAATAGGGGTTGGATTTAAAAA
GAGAGGGGGCGGGGGGGGGGGGAACTAGGAAAAAAAATGTAT
Found at i:43208666 original size:22 final size:22
Alignment explanation
Indices: 43208618--43208666 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
43208608 GAAATGGGAG
*
43208618 GATTTAAATAAAATATAAGATT
1 GATTTAAATAAAATATAAAATT
*
43208640 GATTTAAATAAAATTTAAAATT
1 GATTTAAATAAAATATAAAATT
*
43208662 TATTT
1 GATTT
43208667 TTTATATGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (22 bp):
GATTTAAATAAAATATAAAATT
Found at i:43208892 original size:24 final size:24
Alignment explanation
Indices: 43208864--43208911 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
43208854 TAATTTTTAA
*
43208864 AAAAATTATAAATAAAAATTAATCT
1 AAAAATT-TAAATAAAAATGAATCT
*
43208889 AAAAATTTAAATATAAATGAATC
1 AAAAATTTAAATAAAAATGAATC
43208912 AGGTCAGGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (24 bp):
AAAAATTTAAATAAAAATGAATCT
Found at i:43242820 original size:19 final size:19
Alignment explanation
Indices: 43242778--43242821 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
43242768 NNNNCCGTTG
43242778 TTTTAATAAAAATCAAATT
1 TTTTAATAAAAATCAAATT
* *
43242797 ATTTATTAAAAA-CAACATT
1 TTTTAATAAAAATCAA-ATT
43242816 TTTTAA
1 TTTTAA
43242822 GGTGACCCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (19 bp):
TTTTAATAAAAATCAAATT
Found at i:43245729 original size:18 final size:16
Alignment explanation
Indices: 43245706--43245747 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 16
43245696 CAAAATGTAA
43245706 TTAATTTAAAATTTTTAT
1 TTAA-TTAAAA-TTTTAT
43245724 TTAATT--AATTTTAT
1 TTAATTAAAATTTTAT
43245738 TTAATTAAAA
1 TTAATTAAAA
43245748 ACTTATTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 12 0.55
15 2 0.09
16 2 0.09
17 2 0.09
18 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTAATTAAAATTTTAT
Found at i:43245737 original size:14 final size:14
Alignment explanation
Indices: 43245718--43245745 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
43245708 AATTTAAAAT
43245718 TTTTATTTAATTAA
1 TTTTATTTAATTAA
43245732 TTTTATTTAATTAA
1 TTTTATTTAATTAA
43245746 AAACTTATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTAATTAA
Found at i:43248518 original size:17 final size:18
Alignment explanation
Indices: 43248490--43248523 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
43248480 AATAAGATTC
43248490 TAAATATTTAAAAAAATT
1 TAAATATTTAAAAAAATT
*
43248508 TAAAT-TTTAAATAAAT
1 TAAATATTTAAAAAAAT
43248524 ATTACATACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATATTTAAAAAAATT
Found at i:43253764 original size:28 final size:29
Alignment explanation
Indices: 43253732--43253791 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 29
43253722 ACGTCACATT
* *
43253732 AAATTTTG-GGTTAATTAATTTTTTTAAA
1 AAATTTTGAGATTAATTAAATTTTTTAAA
43253760 AAA--TTGAGATTAATTAAATTTTTTAAA
1 AAATTTTGAGATTAATTAAATTTTTTAAA
43253787 AAATT
1 AAATT
43253792 AACGCAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
26 3 0.11
27 21 0.78
28 3 0.11
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.48
Consensus pattern (29 bp):
AAATTTTGAGATTAATTAAATTTTTTAAA
Found at i:43261054 original size:25 final size:26
Alignment explanation
Indices: 43261011--43261062 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
43261001 GTTATAACTT
43261011 TTTTTTATTTACCAAAAAATATATAAA
1 TTTTTTATTTACC-AAAAATATATAAA
43261038 TTTTTTATTTACC-AAAATATATAAA
1 TTTTTTATTTACCAAAAATATATAAA
43261063 AAAAACTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 12 0.48
27 13 0.52
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (26 bp):
TTTTTTATTTACCAAAAATATATAAA
Found at i:43261263 original size:18 final size:17
Alignment explanation
Indices: 43261240--43261390 Score: 78
Period size: 18 Copynumber: 8.4 Consensus size: 17
43261230 GAAGGAGAGG
43261240 GGAAG-AAGAAGAAAGAAA
1 GGAAGAAAGAA-AAAG-AA
43261258 GGAAGAAAGAAAAAGAA
1 GGAAGAAAGAAAAAGAA
* *
43261275 GG-A-AAAGGAAAGGAGA
1 GGAAGAAAGAAAAAGA-A
43261291 GGAAAGAAAGAAAAAGAA
1 GG-AAGAAAGAAAAAGAA
** *
43261309 GGAAAGAAAAGGAAAGGGGA
1 GG-AAG-AAA-GAAAAAGAA
*
43261329 GGAAAGAAAGAAAAATAA
1 GG-AAGAAAGAAAAAGAA
*
43261347 GGAAAGAAAAGGAAAGGAGAA
1 GG-AAG-AAA-GAAA-AAGAA
43261368 GAGAA-AAA-AAAAAGAA
1 G-GAAGAAAGAAAAAGAA
*
43261384 AGAAGAA
1 GGAAGAA
43261391 GAAGAGGGAA
Statistics
Matches: 106, Mismatches: 15, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
15 12 0.11
16 10 0.09
17 7 0.07
18 28 0.26
19 26 0.25
20 16 0.15
21 6 0.06
22 1 0.01
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (17 bp):
GGAAGAAAGAAAAAGAA
Found at i:43261273 original size:10 final size:10
Alignment explanation
Indices: 43261242--43261313 Score: 54
Period size: 10 Copynumber: 6.6 Consensus size: 10
43261232 AGGAGAGGGG
*
43261242 AAGAAGAAGA
1 AAGAAAAAGA
43261252 AAGAAAGGAAGA
1 AAGAAA--AAGA
43261264 AAGAAAAAGA
1 AAGAAAAAGA
* *
43261274 AGGAAAAGGA
1 AAGAAAAAGA
43261284 AAGGAGAGGAAAGA
1 AA-GA-A--AAAGA
43261298 AAGAAAAAGA
1 AAGAAAAAGA
*
43261308 AGGAAA
1 AAGAAA
43261314 GAAAAGGAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
10 28 0.56
11 2 0.04
12 12 0.24
13 2 0.04
14 6 0.12
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:43261273 original size:22 final size:23
Alignment explanation
Indices: 43261242--43261343 Score: 73
Period size: 24 Copynumber: 4.3 Consensus size: 23
43261232 AGGAGAGGGG
*
43261242 AAGAAGAAGAAAG-AAAGGAAGA
1 AAGAAAAAGAAAGAAAAGGAAGA
*
43261264 AAGAAAAAGAAGGAAAAGGAA-A
1 AAGAAAAAGAAAGAAAAGGAAGA
* * *
43261286 GGAGAGGAAAGAAAGAAAAAGAAGGA
1 -AAGA-AAAAGAAAGAAAAGGAA-GA
* ***
43261312 AAGAAAAGGAAAGGGGAGGAAAGA
1 AAGAAAAAGAAAGAAAAGG-AAGA
43261336 AAGAAAAA
1 AAGAAAAA
43261344 TAAGGAAAGA
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
22 12 0.20
23 10 0.17
24 32 0.53
25 5 0.08
26 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (23 bp):
AAGAAAAAGAAAGAAAAGGAAGA
Found at i:43261273 original size:28 final size:30
Alignment explanation
Indices: 43261241--43261322 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 30
43261231 AAGGAGAGGG
43261241 GAAGAAGAAGAAAGAAAGGAA-GAAAGAAA
1 GAAGAAGAAGAAAGAAAGGAAGGAAAGAAA
*
43261270 -AAGAAGGAA-AAGGAAAGGAGAGGAAAGAAA
1 GAAGAA-GAAGAAAGAAAGGA-AGGAAAGAAA
*
43261300 GAAAAAGAAGGAAAGAAAAGGAA
1 GAAGAAGAA-GAAAG-AAAGGAA
43261323 AGGGGAGGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
28 14 0.33
29 4 0.09
30 11 0.26
31 4 0.09
32 4 0.09
33 6 0.14
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (30 bp):
GAAGAAGAAGAAAGAAAGGAAGGAAAGAAA
Found at i:43261318 original size:38 final size:38
Alignment explanation
Indices: 43261260--43261383 Score: 170
Period size: 38 Copynumber: 3.4 Consensus size: 38
43261250 GAAAGAAAGG
43261260 AAGAAAGAAAAAGAA-G---GAAAAGGAAAGGAGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
*
43261294 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGGGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
* *
43261332 AAGAAAGAAAAATAAGGAAAGAAAAGGAAAGGAGAAGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
43261370 GAA-AAA-AAAAAGAA
1 -AAGAAAGAAAAAGAA
43261384 AGAAGAAGAA
Statistics
Matches: 80, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
34 15 0.19
35 1 0.01
37 7 0.09
38 55 0.69
39 2 0.03
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (38 bp):
AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
Found at i:43261320 original size:10 final size:10
Alignment explanation
Indices: 43261262--43261362 Score: 79
Period size: 10 Copynumber: 10.5 Consensus size: 10
43261252 AAGAAAGGAA
*
43261262 GAAAGAAAAA
1 GAAAGAAAAG
*
43261272 GAAGGAAAAG
1 GAAAGAAAAG
* *
43261282 GAAAGGAGAG
1 GAAAGAAAAG
43261292 GAAAG-AAA-
1 GAAAGAAAAG
43261300 GAAA-AAGAAG
1 GAAAGAA-AAG
43261310 GAAAGAAAAG
1 GAAAGAAAAG
***
43261320 GAAAGGGGAG
1 GAAAGAAAAG
43261330 GAAAG-AAA-
1 GAAAGAAAAG
43261338 GAAA-AATAAG
1 GAAAGAA-AAG
43261348 GAAAGAAAAG
1 GAAAGAAAAG
43261358 GAAAG
1 GAAAG
43261363 GAGAAGAGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
8 10 0.14
9 7 0.10
10 51 0.71
11 4 0.06
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (10 bp):
GAAAGAAAAG
Found at i:43261323 original size:28 final size:28
Alignment explanation
Indices: 43261245--43261324 Score: 85
Period size: 34 Copynumber: 2.8 Consensus size: 28
43261235 AGAGGGGAAG
43261245 AAGAA-GAAAG-AAAGG-AAGAAAGAAA
1 AAGAAGGAAAGAAAAGGAAAGAAAGAAA
43261270 AAGAAGGAAAAGGAAAGGAGAGGAAAGAAAGAAA
1 AAGAAGG-AAA-G-AA--A-AGGAAAGAAAGAAA
43261304 AAGAAGGAAAGAAAAGGAAAG
1 AAGAAGGAAAGAAAAGGAAAG
43261325 GGGAGGAAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
25 5 0.11
26 1 0.02
27 3 0.07
28 8 0.17
29 1 0.02
30 1 0.02
31 2 0.04
32 2 0.04
33 6 0.13
34 17 0.37
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (28 bp):
AAGAAGGAAAGAAAAGGAAAGAAAGAAA
Found at i:43262752 original size:14 final size:14
Alignment explanation
Indices: 43262718--43262753 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
43262708 CTCCCAATTT
* *
43262718 ACGGGAGTCCTGTA
1 ACGGGATTCCCGTA
43262732 ACGGGATTCCCGTA
1 ACGGGATTCCCGTA
43262746 ACGGGATT
1 ACGGGATT
43262754 ATCTGCATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (14 bp):
ACGGGATTCCCGTA
Found at i:43263392 original size:17 final size:17
Alignment explanation
Indices: 43263372--43263408 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
43263362 GGATGGGGAG
43263372 ATGCTATTCTAATATTC
1 ATGCTATTCTAATATTC
43263389 ATGCTATTCTAATATTC
1 ATGCTATTCTAATATTC
43263406 ATG
1 ATG
43263409 ACATCTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (17 bp):
ATGCTATTCTAATATTC
Found at i:43266145 original size:41 final size:41
Alignment explanation
Indices: 43266039--43266314 Score: 455
Period size: 41 Copynumber: 6.7 Consensus size: 41
43266029 NNNNNNNNNN
43266039 GCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
1 GCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
* * *
43266080 CCTTTCTC-AAAACGCTGCTAAAGATCTGAGCATTAGCGGC
1 GCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
*
43266120 GCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
1 GCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
*
43266161 GCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
1 GCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
*
43266202 GCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
1 GCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
*
43266243 GCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
1 GCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
* *
43266284 GCTTTTTTTAAAAACGCCACTAAAGATCTGA
1 GC-TTTTTCAAAAACGCCGCTAAAGATCTGA
43266315 AAGGTACAAA
Statistics
Matches: 221, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
40 36 0.16
41 160 0.72
42 25 0.11
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (41 bp):
GCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGGC
Found at i:43266992 original size:113 final size:111
Alignment explanation
Indices: 43266367--43266984 Score: 919
Period size: 113 Copynumber: 5.5 Consensus size: 111
43266357 TTTTTCCGTA
* *
43266367 TTTTGTACTGTGTACTGGTGCCAGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTATTATTTT
1 TTTTGTACTGTGTACTGGTGCCGGCCATTGACAGGCCAGCACCC--AAAAATTTTTTTTTATTTT
43266432 TTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAATAAAAAAATTT
64 TTTCGTATTTTTATATCTGATTCTGACACG-AAAAAAATAAAAAAATTT
* *
43266481 TTTTGTACTGTGTACTGGGTGCCGGCCATTTACAGGCCAGCACCCAAAATTTTTTTTTTATTTTT
1 TTTTGTACTGTGTACT-GGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTA-TTTT
*
43266546 TTTCGTATTTTTATATCTGATTCTGACATGAAAAAAATAAAAGAAATTTT
64 TTTCGTATTTTTATATCTGATTCTGACACGAAAAAAATAAAA-AAA-TTT
* * **
43266596 TTTTGTACTGTGTACTTGGTGCCGACCATTGACAGGCCAGCTCCCAAAAA-----AATT-TTTTT
1 TTTTGTACTGTGTAC-TGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTATTTTT
**
43266655 TTCGTATTTTT-TATCTGATTCTGACACGAAAAAAATAAAAAAA-AA
65 TTCGTATTTTTATATCTGATTCTGACACGAAAAAAATAAAAAAATTT
*
43266700 TTTTGTATTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTATTTTT
1 TTTTGTACTGTGTACT-GGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTATTTTT
43266765 TTCGTATTTTTATATCTGATTCTGACACGAAAAAAATAAAAAATATTT
65 TTCGTATTTTTATATCTGATTCTGACACGAAAAAAATAAAAAA-ATTT
* *
43266813 TTTTGTACTGTGTACTGCATGCTGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTATTTTT
1 TTTTGTACTGTGTACTG-GTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTATTTTT
43266878 TTCGTATTTTTATATCTGATTCTGACACGAAAAAAATAAAAAATATTT
65 TTCGTATTTTTATATCTGATTCTGACACGAAAAAAATAAAAAA-ATTT
* *
43266926 TTTTGTACTGTGTACTGCATGCTGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTT
1 TTTTGTACTGTGTACTG-GTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTT
43266985 TCGTTTTTTT
Statistics
Matches: 464, Mismatches: 24, Indels: 33
0.89 0.05 0.06
Matches are distributed among these distances:
103 1 0.00
104 45 0.10
106 3 0.01
107 28 0.06
108 16 0.03
109 2 0.00
110 18 0.04
111 31 0.07
112 2 0.00
113 192 0.41
114 52 0.11
115 73 0.16
116 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (111 bp):
TTTTGTACTGTGTACTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTATTTTTT
TCGTATTTTTATATCTGATTCTGACACGAAAAAAATAAAAAAATTT
Found at i:43267704 original size:30 final size:31
Alignment explanation
Indices: 43267668--43267747 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
43267658 GATTGAATCA
* *
43267668 AAATTAAAGTTTCATGTGTATAATT-ATATC
1 AAATTAAAGTTTCATGTATAGAATTAATATC
* *
43267698 AAATTAAAATTT-ATGTATCGAATTACATATC
1 AAATTAAAGTTTCATGTATAGAATTA-ATATC
*
43267729 GAATTAAAG-TTCATGTATA
1 AAATTAAAGTTTCATGTATA
43267748 CTTTTGTGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
29 9 0.22
30 13 0.32
31 18 0.45
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (31 bp):
AAATTAAAGTTTCATGTATAGAATTAATATC
Found at i:43273048 original size:14 final size:16
Alignment explanation
Indices: 43273029--43273066 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
43273019 ATCACCCGTG
43273029 TTAATTTTT-TA-AAA
1 TTAATTTTTATATAAA
43273043 TTAATTTTTATATAAA
1 TTAATTTTTATATAAA
*
43273059 ATAATTTT
1 TTAATTTT
43273067 AAAAATATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
15 2 0.10
16 10 0.48
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAATTTTTATATAAA
Found at i:43273359 original size:2 final size:2
Alignment explanation
Indices: 43273348--43273377 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
43273338 ATTACGTAAA
43273348 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43273378 NNNNNNNNNN
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:43274079 original size:19 final size:18
Alignment explanation
Indices: 43274036--43274079 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
43274026 TTTCACTTGT
43274036 TTAAATTGAAAATTTAAA
1 TTAAATTGAAAATTTAAA
* **
43274054 TTGAATTGATAAATTTCGA
1 TTAAATTGA-AAATTTAAA
43274073 TTAAATT
1 TTAAATT
43274080 TAAATATGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.43
Consensus pattern (18 bp):
TTAAATTGAAAATTTAAA
Found at i:43276751 original size:82 final size:83
Alignment explanation
Indices: 43276646--43276810 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 83
43276636 AAAAATAATT
43276646 AAAATGAAAATTTTAAAGAAAATTGAATACTGTAAAAAAATTAATTATGAGGTTTTTAAAGCTTT
1 AAAATGAAAATTTTAAAGAAAATTGAATACTGTAAAAAAATTAATTATGAGGTTTTTAAAGCTTT
43276711 TATAGAAATTATTGTTCA
66 TATAGAAATTATTGTTCA
43276729 AAAATGAAAA-TTTAAAGAAAATTGAATACTGTAAAAAAATTAATTATGAGGTTTTTAAAGCTTT
1 AAAATGAAAATTTTAAAGAAAATTGAATACTGTAAAAAAATTAATTATGAGGTTTTTAAAGCTTT
43276793 TATAGAAATTATTGTTCA
66 TATAGAAATTATTGTTCA
43276811 TTCTCTCTTT
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
82 72 0.88
83 10 0.12
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (83 bp):
AAAATGAAAATTTTAAAGAAAATTGAATACTGTAAAAAAATTAATTATGAGGTTTTTAAAGCTTT
TATAGAAATTATTGTTCA
Found at i:43278620 original size:31 final size:31
Alignment explanation
Indices: 43278531--43278621 Score: 102
Period size: 31 Copynumber: 3.0 Consensus size: 31
43278521 ATGATTAGTG
*
43278531 AAAATTG-A-ATTAAATGAATA-TTTCATGTAT
1 AAAATTGCACATTAAATCAA-AGTTT-ATGTAT
*
43278561 AAAATTGCACA--AAATCAAAGTTTTTGTAT
1 AAAATTGCACATTAAATCAAAGTTTATGTAT
*
43278590 AAAATTGCACATTAAATTAAAGTTTATGTAT
1 AAAATTGCACATTAAATCAAAGTTTATGTAT
43278621 A
1 A
43278622 GTTTTGAGAT
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
29 17 0.33
30 16 0.31
31 18 0.35
32 1 0.02
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (31 bp):
AAAATTGCACATTAAATCAAAGTTTATGTAT
Found at i:43278974 original size:19 final size:19
Alignment explanation
Indices: 43278939--43278976 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
43278929 AAAAATTCAA
*
43278939 ATAAAAATAACTCAAAATT
1 ATAAAAATAACTAAAAATT
43278958 ATAAAAATTAA-TAAAAATT
1 ATAAAAA-TAACTAAAAATT
43278977 CACAAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
ATAAAAATAACTAAAAATT
Found at i:43283865 original size:13 final size:13
Alignment explanation
Indices: 43283847--43283872 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43283837 AACAATTCCG
43283847 TTTATGTTTTTTA
1 TTTATGTTTTTTA
43283860 TTTATGTTTTTTA
1 TTTATGTTTTTTA
43283873 GATTGGAACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (13 bp):
TTTATGTTTTTTA
Found at i:43291259 original size:43 final size:43
Alignment explanation
Indices: 43291211--43291382 Score: 344
Period size: 43 Copynumber: 4.0 Consensus size: 43
43291201 AAAATATATG
43291211 TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
1 TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
43291254 TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
1 TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
43291297 TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
1 TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
43291340 TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
1 TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
43291383 CAATGATATT
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 129 1.00
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.35
Consensus pattern (43 bp):
TAAGGCCAACGTAAAGCTTTGGTTGAGTGGTTTAAGGTTTTAC
Found at i:43292196 original size:31 final size:29
Alignment explanation
Indices: 43292121--43292199 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
43292111 TGTTTGGTTC
* *
43292121 ATGTTACATTTTAGTCACTTATGTTTGAA
1 ATGTAACATTTTAGTCACTTATGTTTCAA
* * *
43292150 ATGTTACGTTTTAGTCACTTATGTTATCATG
1 ATGTAACATTTTAGTCACTTATGTT-TCA-A
*
43292181 TTGTAACATTTTAGTCACT
1 ATGTAACATTTTAGTCACT
43292200 GAGCCGTTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 24 0.57
30 2 0.05
31 16 0.38
ACGTcount: A:0.25, C:0.13, G:0.14, T:0.48
Consensus pattern (29 bp):
ATGTAACATTTTAGTCACTTATGTTTCAA
Found at i:43303129 original size:3 final size:3
Alignment explanation
Indices: 43303121--43303157 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
43303111 CTTTATACCT
43303121 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
43303158 ACAGAAACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:43303270 original size:3 final size:3
Alignment explanation
Indices: 43303262--43303298 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
43303252 CTTTATACCT
43303262 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
43303299 ACAGAAACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:43303359 original size:141 final size:142
Alignment explanation
Indices: 43303095--43303377 Score: 559
Period size: 141 Copynumber: 2.0 Consensus size: 142
43303085 CATCTTCCGT
43303095 GGCAATGCTGGCCCACCTTTATACCTATAATAATAATAATAATAATAATAATAATAATAATAAAC
1 GGCAATGCTGGCCCACCTTTATACCTATAATAATAATAATAATAATAATAATAATAATAATAAAC
43303160 AGAAACAAGATTTACAAAAGGATATAAAAAATAATAATAAACAACAGAAACAAGTTTTACCAGCT
66 AGAAACAAGATTTACAAAAGGATATAAAAAATAATAATAAACAACAGAAACAAGTTTTACCAGCT
43303225 ACCTTATTGTAC
131 ACCTTATTGTAC
43303237 GGCAATGCT-GCCCACCTTTATACCTATAATAATAATAATAATAATAATAATAATAATAATAAAC
1 GGCAATGCTGGCCCACCTTTATACCTATAATAATAATAATAATAATAATAATAATAATAATAAAC
43303301 AGAAACAAGATTTACAAAAGGATATAAAAAATAATAATAAACAACAGAAACAAGTTTTACCAGCT
66 AGAAACAAGATTTACAAAAGGATATAAAAAATAATAATAAACAACAGAAACAAGTTTTACCAGCT
43303366 ACCTTATTGTAC
131 ACCTTATTGTAC
43303378 ATTCAAAGTT
Statistics
Matches: 141, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
141 132 0.94
142 9 0.06
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (142 bp):
GGCAATGCTGGCCCACCTTTATACCTATAATAATAATAATAATAATAATAATAATAATAATAAAC
AGAAACAAGATTTACAAAAGGATATAAAAAATAATAATAAACAACAGAAACAAGTTTTACCAGCT
ACCTTATTGTAC
Found at i:43307297 original size:17 final size:17
Alignment explanation
Indices: 43307277--43307319 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
43307267 ATTATTCAAA
43307277 TATTTGATTTAT-TTAAT
1 TATTT-ATTTATCTTAAT
*
43307294 TATTTTTTTATCTTAAT
1 TATTTATTTATCTTAAT
43307311 TATTTATTT
1 TATTTATTT
43307320 TAATTTTTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (17 bp):
TATTTATTTATCTTAAT
Found at i:43316910 original size:26 final size:26
Alignment explanation
Indices: 43316874--43316928 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
43316864 TTTTTACCTA
43316874 TTAGAAATGGGAGCTTTATAATGTTT
1 TTAGAAATGGGAGCTTTATAATGTTT
*
43316900 TTAGAGATGGGAGCTTTATAATGTTT
1 TTAGAAATGGGAGCTTTATAATGTTT
43316926 TTA
1 TTA
43316929 CTTTCTTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.04, G:0.24, T:0.44
Consensus pattern (26 bp):
TTAGAAATGGGAGCTTTATAATGTTT
Found at i:43317289 original size:11 final size:11
Alignment explanation
Indices: 43317273--43317345 Score: 71
Period size: 10 Copynumber: 6.7 Consensus size: 11
43317263 TATTTTACAA
43317273 ATTTAAAAAAT
1 ATTTAAAAAAT
*
43317284 ATTTAAAAAAA
1 ATTTAAAAAAT
*
43317295 ATTT-TAAAAT
1 ATTTAAAAAAT
*
43317305 -TTAAAAAAAT
1 ATTTAAAAAAT
43317315 -TTTAAAAAAGT
1 ATTTAAAAAA-T
*
43317326 ATTTTAAAAAT
1 ATTTAAAAAAT
43317337 ATTTTAAAA
1 A-TTTAAAA
43317346 TTAAAAAATA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
9 2 0.04
10 17 0.34
11 17 0.34
12 14 0.28
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (11 bp):
ATTTAAAAAAT
Found at i:43317307 original size:30 final size:31
Alignment explanation
Indices: 43317264--43317334 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
43317254 CCAAAAATTT
43317264 ATTTTACAAATTT-AAAAAATATTTAAAAAA-A
1 ATTTTA-AAATTTAAAAAAAT-TTTAAAAAAGA
*
43317295 ATTTTAAAATTTAAAAAAATTTTAAAAAAGT
1 ATTTTAAAATTTAAAAAAATTTTAAAAAAGA
43317326 ATTTTAAAA
1 ATTTTAAAA
43317335 ATATTTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 15 0.41
31 22 0.59
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (31 bp):
ATTTTAAAATTTAAAAAAATTTTAAAAAAGA
Found at i:43317312 original size:18 final size:19
Alignment explanation
Indices: 43317284--43317321 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
43317274 TTTAAAAAAT
43317284 ATTTAAAAAAAATTTTAAA
1 ATTTAAAAAAAATTTTAAA
43317303 ATTT-AAAAAAATTTTAAA
1 ATTTAAAAAAAATTTTAAA
43317321 A
1 A
43317322 AAGTATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTTAAAAAAAATTTTAAA
Found at i:43317322 original size:19 final size:20
Alignment explanation
Indices: 43317279--43317322 Score: 65
Period size: 18 Copynumber: 2.2 Consensus size: 20
43317269 ACAAATTTAA
43317279 AAAATATTTAAAAAAAATTTT
1 AAAA-ATTTAAAAAAAATTTT
43317300 -AAAATTT-AAAAAAATTTT
1 AAAAATTTAAAAAAAATTTT
43317318 AAAAA
1 AAAAA
43317323 AGTATTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 11 0.50
19 8 0.36
20 3 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAATTTAAAAAAAATTTT
Found at i:43317329 original size:42 final size:40
Alignment explanation
Indices: 43317274--43317353 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 40
43317264 ATTTTACAAA
43317274 TTTAAAAAATATTTAAAAAAAATTTTAAAATTTAAAAAAAT
1 TTTAAAAAATATTTAAAAAAAATTTTAAAA-TTAAAAAAAT
* *
43317315 TTTAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAA
1 TTTAAAAAA-TATTTAAAAAAAATTTTAAAATTAAAAAA
43317354 TAAATATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 17 0.47
42 19 0.53
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (40 bp):
TTTAAAAAATATTTAAAAAAAATTTTAAAATTAAAAAAAT
Found at i:43317330 original size:31 final size:30
Alignment explanation
Indices: 43317263--43317334 Score: 101
Period size: 30 Copynumber: 2.3 Consensus size: 30
43317253 ACCAAAAATT
43317263 TATTTTACAAATTTAAAAAATATTTAAAAAA
1 TATTTTA-AAATTTAAAAAATATTTAAAAAA
*
43317294 AATTTTAAAATTTAAAAAA-ATTTTAAAAAA
1 TATTTTAAAATTTAAAAAATA-TTTAAAAAA
43317324 GTATTTTAAAA
1 -TATTTTAAAA
43317335 ATATTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
29 1 0.03
30 21 0.57
31 15 0.41
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (30 bp):
TATTTTAAAATTTAAAAAATATTTAAAAAA
Found at i:43323729 original size:46 final size:46
Alignment explanation
Indices: 43323592--43323730 Score: 199
Period size: 46 Copynumber: 3.0 Consensus size: 46
43323582 TGGCAAATTG
* * *
43323592 TGAAAAGTAGGTATGATGTTTCAGTGAAGAAAACCATACTGAGTTG
1 TGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGTTA
* *
43323638 TGAAAAGTAGGTATGGTATTT-TGATAAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTATTTCAG-TGAAGAAAACCATACTGAGTTA
* *
43323684 TGAAAAGTAGGTATGGTATTTCAGTGGAGGAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGTTA
43323730 T
1 T
43323731 AGCATTGTAT
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
45 1 0.01
46 80 0.98
47 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (46 bp):
TGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGTTA
Found at i:43326454 original size:46 final size:46
Alignment explanation
Indices: 43326381--43326570 Score: 229
Period size: 46 Copynumber: 4.0 Consensus size: 46
43326371 ACAATGCTAT
* * * *
43326381 AACTCAGTATGGTTTCCTCCACTGAAATACCATACCTACTTTTCAT
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
43326427 AACTCAGTATGGTTTTCTTTA-TCGAAATACCATACTTACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACT-GAAACACC--A--TACCTACTTTTCAC
* *
43326477 AACTCAGTATGGTTTTCCTCATTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* * *
43326523 AACTTAGTATGGTTTTCTTCACTGAAACATCATATCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
43326569 AA
1 AA
43326571 TTTGCCATGG
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
45 1 0.01
46 83 0.66
48 2 0.02
50 39 0.31
51 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:43327558 original size:20 final size:20
Alignment explanation
Indices: 43327533--43327572 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
43327523 CGTCCACCCC
*
43327533 ATATAATTTGGGTCTAATTT
1 ATATAATTTGGGCCTAATTT
43327553 ATATAATTTGGGCCTAATTT
1 ATATAATTTGGGCCTAATTT
43327573 CCTTTTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.47
Consensus pattern (20 bp):
ATATAATTTGGGCCTAATTT
Found at i:43327837 original size:17 final size:17
Alignment explanation
Indices: 43327815--43327862 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
43327805 AAATTCTTTT
43327815 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAC
*
43327832 TAAATCACAGAATTCAC
1 TAAATCACAAAATTCAC
*
43327849 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
43327863 TTATAAATTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 6 0.21
17 22 0.79
ACGTcount: A:0.50, C:0.21, G:0.02, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAC
Found at i:43348090 original size:30 final size:30
Alignment explanation
Indices: 43348023--43348095 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
43348013 GAGAGGGATA
* **
43348023 TTTTATTTAATATTAATATAATTATTTTTAT
1 TTTTA-TTAATATTAATATAATAATTTAAAT
43348054 TTTTATTAATATTAATATAA-AATTTAAAT
1 TTTTATTAATATTAATATAATAATTTAAAT
43348083 TTATTATT-ATATT
1 TT-TTATTAATATT
43348096 TTTTGAAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 13 0.34
30 20 0.53
31 5 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (30 bp):
TTTTATTAATATTAATATAATAATTTAAAT
Found at i:43348837 original size:21 final size:21
Alignment explanation
Indices: 43348811--43348850 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
43348801 CATTATTTTT
43348811 ATTT-AATATTATTAATATAAA
1 ATTTAAAT-TTATTAATATAAA
*
43348832 ATTTAAATTTATTATTATA
1 ATTTAAATTTATTAATATA
43348851 TCTTTCTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTTAAATTTATTAATATAAA
Found at i:43349193 original size:19 final size:21
Alignment explanation
Indices: 43349159--43349201 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
43349149 AACTATTTTA
43349159 ATTTCATAATGCTTTATT-TG
1 ATTTCATAATGCTTTATTCTG
*
43349179 ATTTC-TAATGTTTTATTCTG
1 ATTTCATAATGCTTTATTCTG
43349199 ATT
1 ATT
43349202 CCGTGGAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.58
Consensus pattern (21 bp):
ATTTCATAATGCTTTATTCTG
Found at i:43360766 original size:18 final size:18
Alignment explanation
Indices: 43360703--43360766 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 18
43360693 ATTTATCTTC
* *
43360703 TTTATTTATTTACTTAAT
1 TTTATTTATTTATTTTAT
43360721 CTTTGATTTA-TTATTTTAT
1 -TTT-ATTTATTTATTTTAT
*
43360740 TTTAGTTATTTATTTTAAT
1 TTTATTTATTTATTTT-AT
43360759 TTT-TTTAT
1 TTTATTTAT
43360767 CTGACTTGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 4 0.11
18 14 0.37
19 15 0.39
20 5 0.13
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.70
Consensus pattern (18 bp):
TTTATTTATTTATTTTAT
Found at i:43361152 original size:16 final size:15
Alignment explanation
Indices: 43361123--43361151 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
43361113 TCAAAAAAGC
43361123 ACAAAAAAATAAAAT
1 ACAAAAAAATAAAAT
43361138 ACAAAAAAATAAAA
1 ACAAAAAAATAAAA
43361152 AATATTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (15 bp):
ACAAAAAAATAAAAT
Found at i:43373142 original size:16 final size:16
Alignment explanation
Indices: 43373121--43373157 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
43373111 TCAACAACTT
* *
43373121 TTGTTTATAATAATTG
1 TTGTTTAGAACAATTG
43373137 TTGTTTAGAACAATTG
1 TTGTTTAGAACAATTG
43373153 TTGTT
1 TTGTT
43373158 CGAGAATTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.03, G:0.16, T:0.54
Consensus pattern (16 bp):
TTGTTTAGAACAATTG
Found at i:43376544 original size:30 final size:30
Alignment explanation
Indices: 43376489--43376545 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
43376479 CTTTATTGTA
* * *
43376489 TGTACAATTTGTCTTTTACTAATTATATTT
1 TGTACAATTTGCCATGTACTAATTATATTT
*
43376519 TGTACAATTTGCCATGTACTTATTATA
1 TGTACAATTTGCCATGTACTAATTATA
43376546 CCTTTGTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.51
Consensus pattern (30 bp):
TGTACAATTTGCCATGTACTAATTATATTT
Found at i:43383353 original size:18 final size:19
Alignment explanation
Indices: 43383325--43383361 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
43383315 TTTAACAATC
43383325 GAAATTTATTTTATAATAA
1 GAAATTTATTTTATAATAA
*
43383344 GAAA-TTATTTTGTAATAA
1 GAAATTTATTTTATAATAA
43383362 TCAATGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (19 bp):
GAAATTTATTTTATAATAA
Found at i:43385326 original size:18 final size:18
Alignment explanation
Indices: 43385286--43385326 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
43385276 TTAATCTTTG
43385286 ATTTA-TTATTTTATTTT
1 ATTTATTTATTTTATTTT
*
43385303 AGTTATTTATTTTAATTTT
1 ATTTATTTATTTT-ATTTT
43385322 -TTTAT
1 ATTTAT
43385327 CTGACTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTATTTATTTTATTTT
Found at i:43385694 original size:27 final size:25
Alignment explanation
Indices: 43385664--43385720 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
43385654 TTTCTCACAA
43385664 AAAAT-GATAAAAGAAAGTACAAAAAAT
1 AAAATAGAT-AAA-AAAGTA-AAAAAAT
*
43385691 AAAATACGATAAAAAATTAAAAAAAT
1 AAAATA-GATAAAAAAGTAAAAAAAT
43385717 AAAA
1 AAAA
43385721 AATATTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 11 0.41
27 10 0.37
28 3 0.11
29 3 0.11
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.16
Consensus pattern (25 bp):
AAAATAGATAAAAAAGTAAAAAAAT
Found at i:43399156 original size:13 final size:13
Alignment explanation
Indices: 43399140--43399217 Score: 50
Period size: 12 Copynumber: 6.7 Consensus size: 13
43399130 ATTTTAAATT
43399140 TTTTATAATATTA
1 TTTTATAATATTA
*
43399153 TTTTAT--TA-AA
1 TTTTATAATATTA
43399163 TTTTA-AATATATA
1 TTTTATAATAT-TA
43399176 TTTT-TAATATTA
1 TTTTATAATATTA
* *
43399188 --TAAT-ATAATA
1 TTTTATAATATTA
43399198 TTTTA-AATATTA
1 TTTTATAATATTA
43399210 TTTT-TAAT
1 TTTTATAAT
43399218 TTTAAATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 21
0.64 0.08 0.28
Matches are distributed among these distances:
10 12 0.24
11 5 0.10
12 16 0.33
13 16 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTTATAATATTA
Found at i:43399188 original size:35 final size:34
Alignment explanation
Indices: 43399128--43399258 Score: 128
Period size: 35 Copynumber: 3.8 Consensus size: 34
43399118 CTTGAAATGT
* **
43399128 ATATTTTAAAT-TT-TTTATAATATTATTTTATTA
1 ATATTTTAAATATTATTTTTAATATTATAATA-TA
43399161 A-ATTTTAAATATATATTTTTAATATTATAATATA
1 ATATTTTAAATAT-TATTTTTAATATTATAATATA
*
43399195 ATATTTTAAATATTATTTTTAATTTTA-AATATA
1 ATATTTTAAATATTATTTTTAATATTATAATATA
*
43399228 ATTTTTTCAAATGATTAATTTTTTAA-ATTAT
1 ATATTTT-AAAT-ATT-A-TTTTTAATATTAT
43399259 TTTTAAAGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 14
0.81 0.06 0.14
Matches are distributed among these distances:
32 9 0.11
33 14 0.17
34 21 0.25
35 28 0.34
36 4 0.05
37 7 0.08
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (34 bp):
ATATTTTAAATATTATTTTTAATATTATAATATA
Found at i:43399201 original size:22 final size:22
Alignment explanation
Indices: 43399142--43399210 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
43399132 TTTAAATTTT
*
43399142 TTATAATATTAT-TTTATTAA-A
1 TTATAATATAATATTT-TTAATA
*
43399163 TTTTAA-ATATATATTTTTAATA
1 TTATAATATA-ATATTTTTAATA
*
43399185 TTATAATATAATATTTTAAATA
1 TTATAATATAATATTTTTAATA
43399207 TTAT
1 TTAT
43399211 TTTTAATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 2 0.05
21 11 0.28
22 24 0.60
23 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTATAATATAATATTTTTAATA
Found at i:43399255 original size:16 final size:14
Alignment explanation
Indices: 43399217--43399255 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 14
43399207 TTATTTTTAA
43399217 TTTTAAATATAATT
1 TTTTAAATATAATT
43399231 TTTTCAAATGATTAATT
1 TTTT-AAAT-A-TAATT
43399248 TTTTAAAT
1 TTTTAAAT
43399256 TATTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.18
15 4 0.18
16 5 0.23
17 9 0.41
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (14 bp):
TTTTAAATATAATT
Found at i:43411582 original size:24 final size:22
Alignment explanation
Indices: 43411541--43411584 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
43411531 TTTAATGATA
*
43411541 TTTTTAAAATATATATGAATTT
1 TTTTTAAAATATAAATGAATTT
43411563 TTTTTATAAATATCAAATGAAT
1 TTTTTA-AAATAT-AAATGAAT
43411585 ATGATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 6 0.32
24 7 0.37
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (22 bp):
TTTTTAAAATATAAATGAATTT
Found at i:43415006 original size:12 final size:13
Alignment explanation
Indices: 43414981--43415009 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
43414971 ATTTATATAA
43414981 TAATCATGTTAAT
1 TAATCATGTTAAT
43414994 TAAT-ATGTTAAT
1 TAATCATGTTAAT
43415006 TAAT
1 TAAT
43415010 TTAATATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.48
Consensus pattern (13 bp):
TAATCATGTTAAT
Found at i:43415054 original size:14 final size:14
Alignment explanation
Indices: 43415035--43415061 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
43415025 GTTTATTATT
43415035 TATACATATATATA
1 TATACATATATATA
43415049 TATACATATATAT
1 TATACATATATAT
43415062 TTGGACTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (14 bp):
TATACATATATATA
Found at i:43419594 original size:23 final size:22
Alignment explanation
Indices: 43419568--43419610 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
43419558 TATTAAATCT
*
43419568 ATAATATATAACCTTTATAAAAA
1 ATAATATATAA-ATTTATAAAAA
*
43419591 ATAATTTATAAATTTATAAA
1 ATAATATATAAATTTATAAA
43419611 TTATACAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (22 bp):
ATAATATATAAATTTATAAAAA
Found at i:43421129 original size:44 final size:45
Alignment explanation
Indices: 43421066--43421154 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
43421056 TTCCATTCAC
43421066 TTGTATTTAATCCGTTTTC-ATGCAGATTCAAATTCAAATAATAT
1 TTGTATTTAATCCGTTTTCAATGCAGATTCAAATTCAAATAATAT
*
43421110 TTGTATTTAA-CCTGTTTTCAATGTAGATTCAAATTCAAATAATAT
1 TTGTATTTAATCC-GTTTTCAATGCAGATTCAAATTCAAATAATAT
43421155 AAACAATCAT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 2 0.05
44 16 0.38
45 24 0.57
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (45 bp):
TTGTATTTAATCCGTTTTCAATGCAGATTCAAATTCAAATAATAT
Found at i:43424899 original size:14 final size:15
Alignment explanation
Indices: 43424867--43424903 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
43424857 TAGAATATAT
*
43424867 ATTTTTAGTACTTAC
1 ATTTTTAATACTTAC
43424882 ATTTTTAATACTTA-
1 ATTTTTAATACTTAC
43424896 ATTTTTAA
1 ATTTTTAA
43424904 ACACTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (15 bp):
ATTTTTAATACTTAC
Found at i:43425133 original size:21 final size:22
Alignment explanation
Indices: 43425091--43425133 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
43425081 TTAGTATATA
43425091 TAAAAGAATTAAATAAAAATTT
1 TAAAAGAATTAAATAAAAATTT
43425113 TAAAA-AA-TAAATAACAAATTT
1 TAAAAGAATTAAATAA-AAATTT
43425134 AAATATCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (22 bp):
TAAAAGAATTAAATAAAAATTT
Found at i:43428498 original size:16 final size:16
Alignment explanation
Indices: 43428479--43428509 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43428469 AGAATGTTCG
43428479 TTTGAGTGAATAAATC
1 TTTGAGTGAATAAATC
*
43428495 TTTGGGTGAATAAAT
1 TTTGAGTGAATAAAT
43428510 TTGATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (16 bp):
TTTGAGTGAATAAATC
Found at i:43438591 original size:27 final size:28
Alignment explanation
Indices: 43438527--43438591 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 28
43438517 AACCCGGCTT
* *
43438527 AAAAACTTATTTTACTATTTTAAAATAT
1 AAAAAATTATTTTACTATTTTAAAATAA
*
43438555 AAAAAA-TATTTT-GTA-TTTAAAAGTAA
1 AAAAAATTATTTTACTATTTTAAAA-TAA
43438581 AAAAAATTATT
1 AAAAAATTATT
43438592 ATTAGGTAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
25 7 0.22
26 10 0.31
27 10 0.31
28 5 0.16
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (28 bp):
AAAAAATTATTTTACTATTTTAAAATAA
Found at i:43451422 original size:908 final size:908
Alignment explanation
Indices: 43450029--43451849 Score: 3642
Period size: 908 Copynumber: 2.0 Consensus size: 908
43450019 TTTTAAAAAT
43450029 TACATTTTCTGTTTGCCTCCGGAGGTTATCACTTTCTCTCGTTTTCAAGTTTCAACCATGATATG
1 TACATTTTCTGTTTGCCTCCGGAGGTTATCACTTTCTCTCGTTTTCAAGTTTCAACCATGATATG
43450094 CCCAAGGCAATTTTAAAAGTTTGACAGTTCAGCCTATATATTTAACCATTAAAAACTTTCCGCCG
66 CCCAAGGCAATTTTAAAAGTTTGACAGTTCAGCCTATATATTTAACCATTAAAAACTTTCCGCCG
43450159 ACTGACAAAGAAACTTAGGATGATTATTTTTAATTTATATTTTAAAAATAAATTAATGAATTAAC
131 ACTGACAAAGAAACTTAGGATGATTATTTTTAATTTATATTTTAAAAATAAATTAATGAATTAAC
43450224 ATATAAAATTATTGTACTCACTCATTTAATATATTTATTTATATTTTTAATACAAAATTAAAATA
196 ATATAAAATTATTGTACTCACTCATTTAATATATTTATTTATATTTTTAATACAAAATTAAAATA
43450289 TAATTCAAAATATTATAAAAAGATTTTGTGATACTTTTATTCATGTAAAAAAGATTAATTGTATT
261 TAATTCAAAATATTATAAAAAGATTTTGTGATACTTTTATTCATGTAAAAAAGATTAATTGTATT
43450354 TTTAAAATTAAAAACTTACACATGCCTTGCCTTGCTCGAAAAGCTAAAACAATATTTTAAATCTT
326 TTTAAAATTAAAAACTTACACATGCCTTGCCTTGCTCGAAAAGCTAAAACAATATTTTAAATCTT
43450419 GACGTCATGATCCAAGTTGAACAACCGAAGGCGAATCTAGGGGGTTAGCATGGCCCCAGTTCTTA
391 GACGTCATGATCCAAGTTGAACAACCGAAGGCGAATCTAGGGGGTTAGCATGGCCCCAGTTCTTA
43450484 TTAAAATGGAAAAGTATTATTTAGGTCTTCTAATTTTTTTTTAAAATTTTAAATTAGTAAAGGTA
456 TTAAAATGGAAAAGTATTATTTAGGTCTTCTAATTTTTTTTTAAAATTTTAAATTAGTAAAGGTA
43450549 AAATTGTACTTTGACCCTTCTAGAATTATAAAAATTAGGTTTAATTTTTTAAAATTATAAAAGTA
521 AAATTGTACTTTGACCCTTCTAGAATTATAAAAATTAGGTTTAATTTTTTAAAATTATAAAAGTA
43450614 TAGACTATAAAAAAATAAAATTTCATTTGGCCCCTAAAAATTTGTTCCGGTTTGGCTTGTGTAAA
586 TAGACTATAAAAAAATAAAATTTCATTTGGCCCCTAAAAATTTGTTCCGGTTTGGCTTGTGTAAA
43450679 CAACGTAATAACTTTAGAACTGTTTTGTCCTCCAACAAATGAAAATAAAACATAAAATAGTAAAC
651 CAACGTAATAACTTTAGAACTGTTTTGTCCTCCAACAAATGAAAATAAAACATAAAATAGTAAAC
43450744 TAAGTTGAAAGCTTTGTGTAGTTAAGCTACATATACGTGAACATTATAGGTTACATTTAGACATC
716 TAAGTTGAAAGCTTTGTGTAGTTAAGCTACATATACGTGAACATTATAGGTTACATTTAGACATC
43450809 TTATTATACTGTTTTTTTGGGTATGATACACGCACGTGAATGAAAACAATATGTACATCAAATTA
781 TTATTATACTGTTTTTTTGGGTATGATACACGCACGTGAATGAAAACAATATGTACATCAAATTA
43450874 CTTCCAAAACGACAAGCAACTTATCTATAATTTATTGTATAGTTGAAATGACTTGTTTATATC
846 CTTCCAAAACGACAAGCAACTTATCTATAATTTATTGTATAGTTGAAATGACTTGTTTATATC
43450937 TACATTTTCTGTTTGCCTCCGGAGGTTATCACTTTCTCTCGTTTTCAAGTTTCAACCATGATATG
1 TACATTTTCTGTTTGCCTCCGGAGGTTATCACTTTCTCTCGTTTTCAAGTTTCAACCATGATATG
43451002 CCCAAGGCAATTTTAAAAGTTTGACAGTTCAGCCTATATATTTAACCATTAAAAACTTTCCGCCG
66 CCCAAGGCAATTTTAAAAGTTTGACAGTTCAGCCTATATATTTAACCATTAAAAACTTTCCGCCG
43451067 ACTGACAAAGAAACTTAGGATGATTATTTTTAATTTATATTTTAAAAATAAATTAATGAATTAAC
131 ACTGACAAAGAAACTTAGGATGATTATTTTTAATTTATATTTTAAAAATAAATTAATGAATTAAC
43451132 ATATAAAATTATTGTACTCACTCATTTAATATATTTATTTATATTTTTAATACAAAATTAAAATA
196 ATATAAAATTATTGTACTCACTCATTTAATATATTTATTTATATTTTTAATACAAAATTAAAATA
43451197 TAATTCAAAATATTATAAAAAGATTTTGTGATACTTTTATTCATGTAAAAAAGATTAATTGTATT
261 TAATTCAAAATATTATAAAAAGATTTTGTGATACTTTTATTCATGTAAAAAAGATTAATTGTATT
43451262 TTTAAAATTAAAAACTTACACATGCCTTGCCTTGCTCGAAAAGCTAAAACAATATTTTAAATCTT
326 TTTAAAATTAAAAACTTACACATGCCTTGCCTTGCTCGAAAAGCTAAAACAATATTTTAAATCTT
43451327 GACGTCATGATCCAAGTTGAACAACCGAAGGCGAATCTAGGGGGTTAGCATGGCCCCAGTTCTTA
391 GACGTCATGATCCAAGTTGAACAACCGAAGGCGAATCTAGGGGGTTAGCATGGCCCCAGTTCTTA
43451392 TTAAAATGGAAAAGTATTATTTAGGTCTTCTAATTTTTTTTTAAAATTTTAAATTAGTAAAGGTA
456 TTAAAATGGAAAAGTATTATTTAGGTCTTCTAATTTTTTTTTAAAATTTTAAATTAGTAAAGGTA
43451457 AAATTGTACTTTGACCCTTCTAGAATTATAAAAATTAGGTTTAATTTTTTAAAATTATAAAAGTA
521 AAATTGTACTTTGACCCTTCTAGAATTATAAAAATTAGGTTTAATTTTTTAAAATTATAAAAGTA
43451522 TAGACTATAAAAAAATAAAATTTCATTTGGCCCCTAAAAATTTGTTCCGGTTTGGCTTGTGTAAA
586 TAGACTATAAAAAAATAAAATTTCATTTGGCCCCTAAAAATTTGTTCCGGTTTGGCTTGTGTAAA
43451587 CAACGTAATAACTTTAGAACTGTTTTGTCCTCCAACAAATGAAAATAAAACATAAAATAGTAAAC
651 CAACGTAATAACTTTAGAACTGTTTTGTCCTCCAACAAATGAAAATAAAACATAAAATAGTAAAC
43451652 TAAGTTGAAAGCTTTGTGTAGTTAAGCTACATATACGTGAACATTATAGGTTACATTTAGACATC
716 TAAGTTGAAAGCTTTGTGTAGTTAAGCTACATATACGTGAACATTATAGGTTACATTTAGACATC
43451717 TTATTATACTGTTTTTTTGGGTATGATACACGCACGTGAATGAAAACAATATGTACATCAAATTA
781 TTATTATACTGTTTTTTTGGGTATGATACACGCACGTGAATGAAAACAATATGTACATCAAATTA
43451782 CTTCCAAAACGACAAGCAACTTATCTATAATTTATTGTATAGTTGAAATGACTTGTTTATATC
846 CTTCCAAAACGACAAGCAACTTATCTATAATTTATTGTATAGTTGAAATGACTTGTTTATATC
43451845 TACAT
1 TACAT
43451850 ATAATATGAT
Statistics
Matches: 913, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
908 913 1.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.37
Consensus pattern (908 bp):
TACATTTTCTGTTTGCCTCCGGAGGTTATCACTTTCTCTCGTTTTCAAGTTTCAACCATGATATG
CCCAAGGCAATTTTAAAAGTTTGACAGTTCAGCCTATATATTTAACCATTAAAAACTTTCCGCCG
ACTGACAAAGAAACTTAGGATGATTATTTTTAATTTATATTTTAAAAATAAATTAATGAATTAAC
ATATAAAATTATTGTACTCACTCATTTAATATATTTATTTATATTTTTAATACAAAATTAAAATA
TAATTCAAAATATTATAAAAAGATTTTGTGATACTTTTATTCATGTAAAAAAGATTAATTGTATT
TTTAAAATTAAAAACTTACACATGCCTTGCCTTGCTCGAAAAGCTAAAACAATATTTTAAATCTT
GACGTCATGATCCAAGTTGAACAACCGAAGGCGAATCTAGGGGGTTAGCATGGCCCCAGTTCTTA
TTAAAATGGAAAAGTATTATTTAGGTCTTCTAATTTTTTTTTAAAATTTTAAATTAGTAAAGGTA
AAATTGTACTTTGACCCTTCTAGAATTATAAAAATTAGGTTTAATTTTTTAAAATTATAAAAGTA
TAGACTATAAAAAAATAAAATTTCATTTGGCCCCTAAAAATTTGTTCCGGTTTGGCTTGTGTAAA
CAACGTAATAACTTTAGAACTGTTTTGTCCTCCAACAAATGAAAATAAAACATAAAATAGTAAAC
TAAGTTGAAAGCTTTGTGTAGTTAAGCTACATATACGTGAACATTATAGGTTACATTTAGACATC
TTATTATACTGTTTTTTTGGGTATGATACACGCACGTGAATGAAAACAATATGTACATCAAATTA
CTTCCAAAACGACAAGCAACTTATCTATAATTTATTGTATAGTTGAAATGACTTGTTTATATC
Found at i:43462249 original size:17 final size:17
Alignment explanation
Indices: 43462208--43462249 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
43462198 AACGTGCTCC
*
43462208 ATAAATTATTTAATTTA
1 ATAAATTTTTTAATTTA
*
43462225 ATATATTTTTTATATTTA
1 ATAAATTTTTTA-ATTTA
43462243 A-AAATTT
1 ATAAATTT
43462250 AAGTATATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATAAATTTTTTAATTTA
Found at i:43462429 original size:29 final size:30
Alignment explanation
Indices: 43462375--43462443 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
43462365 TTTAATGTGT
*
43462375 AATTGTATACATGAACTTTGATTTTG-TAC
1 AATTTTATACATGAACTTTGATTTTGATAC
* *
43462404 AATTTTATACATGAAATTTTGA-TTTGATTC
1 AATTTTATACATG-AACTTTGATTTTGATAC
43462434 AATTCTTATA
1 AATT-TTATA
43462444 AATCGTTAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 16 0.47
30 13 0.38
31 5 0.15
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (30 bp):
AATTTTATACATGAACTTTGATTTTGATAC
Found at i:43494847 original size:18 final size:16
Alignment explanation
Indices: 43494801--43494862 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 16
43494791 GGTGTAAGGT
43494801 TAAATGTTAAAAAAAA
1 TAAATGTTAAAAAAAA
43494817 -AAACTGTACTAAAAAAGTAA
1 TAAA-TGT--TAAAAAA--AA
43494837 TAAATGTTAAAAAAAA
1 TAAATGTTAAAAAAAA
43494853 TCAAA-GTTAA
1 T-AAATGTTAA
43494863 GGCGCAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
15 3 0.08
16 11 0.28
17 3 0.08
18 14 0.36
20 5 0.13
21 3 0.08
ACGTcount: A:0.63, C:0.05, G:0.08, T:0.24
Consensus pattern (16 bp):
TAAATGTTAAAAAAAA
Found at i:43505529 original size:27 final size:26
Alignment explanation
Indices: 43505480--43505531 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
43505470 TTAATTAATT
*
43505480 TTTAAAATTAAAAAAATATAAAAATA
1 TTTAAAATTAAAAAAACATAAAAATA
*
43505506 TTTAAAATGTATAAAAACATAAAAAT
1 TTTAAAAT-TAAAAAAACATAAAAAT
43505532 TAAAAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (26 bp):
TTTAAAATTAAAAAAACATAAAAATA
Found at i:43511274 original size:147 final size:147
Alignment explanation
Indices: 43511007--43511281 Score: 390
Period size: 147 Copynumber: 1.9 Consensus size: 147
43510997 CCACCATCTG
* * ** * *
43511007 TCTTTCCTTTTGCTTTAGCACTCGATGCTTTCCCACCTTCATCCAAATTGTCGCCTTCATTTGTA
1 TCTTTCCTTTTGCCTCAGCACTCGATGCTTTCCCACCTTCATCCAAATTCCCACCTTCATTTGAA
* * * **
43511072 CCTGATTGCTGGTTCAAATCACTCTTACTTGTACCACTGTCAACATTTTCTTCTGATCCATCAAC
66 CCTGATTGCTGGTTCAAACCACTCTTACTTGCACCACTATCAACACCTTCTTCTGATCCATCAAC
43511137 TTCCCCAACATCATTCA
131 TTCCCCAACATCATTCA
** * *
43511154 TCTTTCCTTTTGCCTCCTCACTCGATGCTTTCCCACTTTTATCCAAATTCCCACCTTCATTTGAA
1 TCTTTCCTTTTGCCTCAGCACTCGATGCTTTCCCACCTTCATCCAAATTCCCACCTTCATTTGAA
*
43511219 CCTGATTGTTGGTTCAAACCACTCTTACTTGCACCACTATCAACACCCTT-TTCTGATCCATCA
66 CCTGATTGCTGGTTCAAACCACTCTTACTTGCACCACTATCAACA-CCTTCTTCTGATCCATCA
43511282 TTTTGATTAC
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
147 109 0.98
148 2 0.02
ACGTcount: A:0.20, C:0.33, G:0.09, T:0.38
Consensus pattern (147 bp):
TCTTTCCTTTTGCCTCAGCACTCGATGCTTTCCCACCTTCATCCAAATTCCCACCTTCATTTGAA
CCTGATTGCTGGTTCAAACCACTCTTACTTGCACCACTATCAACACCTTCTTCTGATCCATCAAC
TTCCCCAACATCATTCA
Found at i:43519669 original size:30 final size:30
Alignment explanation
Indices: 43519635--43519692 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
43519625 TAATTTTTAA
* *
43519635 AAAATTAAATTAAATTAT-TATTATTATTTG
1 AAAATTAAAATAAA-TATGTATCATTATTTG
43519665 AAAATTAAAATAAATATGTATCATTATT
1 AAAATTAAAATAAATATGTATCATTATT
43519693 AATTTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (30 bp):
AAAATTAAAATAAATATGTATCATTATTTG
Found at i:43520857 original size:29 final size:29
Alignment explanation
Indices: 43520787--43520853 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 29
43520777 TAAAAATTAT
*
43520787 CAAAATGT-TATAATTTTTTTTTATTTAC
1 CAAAATATATATAATTTTTTTTTATTTAC
43520815 CAAAATATATATAA-TTTTTTTTATTTAC
1 CAAAATATATATAATTTTTTTTTATTTAC
43520843 CAAAATATATA
1 CAAAATATATA
43520854 ATAAAAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
28 32 0.86
29 5 0.14
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.51
Consensus pattern (29 bp):
CAAAATATATATAATTTTTTTTTATTTAC
Found at i:43520879 original size:9 final size:8
Alignment explanation
Indices: 43520853--43520878 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
43520843 CAAAATATAT
43520853 AATAAAAA
1 AATAAAAA
43520861 AATAAAAA
1 AATAAAAA
43520869 AATAAAAA
1 AATAAAAA
43520877 AA
1 AA
43520879 AAACCTGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AATAAAAA
Found at i:43520953 original size:27 final size:27
Alignment explanation
Indices: 43520909--43520990 Score: 119
Period size: 27 Copynumber: 3.0 Consensus size: 27
43520899 ACTCCCTGGG
* *
43520909 ACAAGGGAACACTGTTGGCGGCACCAC
1 ACAAGGGAACCCTGTTGGCGGCACCAA
*
43520936 ACAAGGGAACCCTATTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
43520963 ACAAGGGTTCCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
43520990 A
1 A
43520991 NNNNNNNNNN
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.29, C:0.29, G:0.28, T:0.13
Consensus pattern (27 bp):
ACAAGGGAACCCTGTTGGCGGCACCAA
Found at i:43521345 original size:15 final size:14
Alignment explanation
Indices: 43521305--43521333 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
43521295 TTTTTGTATC
43521305 AATTTAATTATTCT
1 AATTTAATTATTCT
43521319 AATTTAATTATTCT
1 AATTTAATTATTCT
43521333 A
1 A
43521334 GTTTTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:43523952 original size:3 final size:3
Alignment explanation
Indices: 43523944--43523987 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
43523934 ANNNNNNNNN
43523944 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
43523988 CTATAAAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:43524310 original size:27 final size:27
Alignment explanation
Indices: 43524272--43524378 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
43524262 ATAACACGAG
* **
43524272 TGGTGCCGCCAACAAGGAACCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
*
43524299 TGGTGCCACCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
*
43524326 TGGTGCTGCCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
* *
43524353 TGGTGCCGCCAATAGTGTTCCCTTGT
1 TGGTGCCGCCAACAGGGTTCCCTTGT
43524379 CCCAGGGAGT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.30
Consensus pattern (27 bp):
TGGTGCCGCCAACAGGGTTCCCTTGTT
Found at i:43524419 original size:10 final size:9
Alignment explanation
Indices: 43524404--43524439 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
43524394 AATCAGTCCA
43524404 GTTTTTTTCT
1 GTTTTTTT-T
43524414 GTTTTTTTT
1 GTTTTTTTT
*
43524423 GGTTTTTTT
1 GTTTTTTTT
43524432 GTTTTTTT
1 GTTTTTTT
43524440 ATATATTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.00, C:0.03, G:0.14, T:0.83
Consensus pattern (9 bp):
GTTTTTTTT
Found at i:43524469 original size:27 final size:29
Alignment explanation
Indices: 43524439--43524508 Score: 101
Period size: 27 Copynumber: 2.5 Consensus size: 29
43524429 TTTGTTTTTT
43524439 TATATATTTTGGTAAAT-AA-AAAAATTA
1 TATATATTTTGGTAAATAAATAAAAATTA
*
43524466 TATATATTTTGATAAATAAATAAAAATTA
1 TATATATTTTGGTAAATAAATAAAAATTA
*
43524495 TA-ACATTTTGGTAA
1 TATATATTTTGGTAA
43524509 TTTTTATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 16 0.42
28 12 0.32
29 10 0.26
ACGTcount: A:0.50, C:0.01, G:0.07, T:0.41
Consensus pattern (29 bp):
TATATATTTTGGTAAATAAATAAAAATTA
Found at i:43530299 original size:549 final size:548
Alignment explanation
Indices: 43529257--43530910 Score: 2407
Period size: 549 Copynumber: 3.0 Consensus size: 548
43529247 AAACTCACTA
**
43529257 TTTCCTCCCTCAATTGACCATTCTCTTTGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTC
1 TTTCCTCCCTCAGCTGACCATTCTCTTTGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTC
*
43529322 TGGTTCTTTAGAGAAATGACCTCCAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTC
66 TGGTTCTTTAGAGAAATGAACTCCAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTC
* *
43529387 CTGTAGAACTCTCTGTTGATCCTCAGTCTTGCTTACTATCTCTTCTTTTGCCTTTTCTATCTCAA
131 CTGCAGAACTCTCTGTTGATCCTCGGTCTTGCTTACTATCTCTTCTTTTGCCTTTTCTATCTCAA
* * *
43529452 TCATATGATCT-GAAATAGCTTGAGTTTTTCTCTCAAGCTGAACTTCAACTTCAGCTTTCTGGCT
196 TCACATGAT-TGGAAATAGCTTGAGTTTTTCTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCT
* * * * * * *
43529516 ATGCATGGATTCCAGTTTCTGCTGCAATGTATTTATTTCATCCATCAAGCTCTTGACTTG-GTTC
260 ATGCAAGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTT-
** * *
43529580 GATGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTCAGTCCGCAGCGACTC
324 GATGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTC
* * *
43529645 CATGTCTCCTAGCAGATTGTTAATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTGTCT
389 CATGTCTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCT
* * * * *
43529710 CATTATCCTCAAACTTCTTTGTGAGAGTAAAAAATTCTTCTTGTCTCGTCTTTAATACCCTCTCG
454 CATTATCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTCGT-TTTGATATCATCTCG
** *
43529775 AGTTCTGAAATTTGATATTGCAGTCCCATAT
518 AGTTCTGAAATTTGGGATTGCAGTCCTATAT
* * * *
43529806 TTTCCTCCCGCAGCTGACCATTCTCTTCGATTTTAGTTATCAGGTCCTCTTCCAGTTCACCTTTC
1 TTTCCTCCCTCAGCTGACCATTCTCTTTGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTC
43529871 TGGTTCTTTAGAGAAATGAACTCCAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTC
66 TGGTTCTTTAGAGAAATGAACTCCAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTC
* * *
43529936 CTGCAGAACTCTCTGTTGATCTTCGGTCCTGCTTACTATCTCTTCTTTTGCCTTCTCTATCTCAA
131 CTGCAGAACTCTCTGTTGATCCTCGGTCTTGCTTACTATCTCTTCTTTTGCCTTTTCTATCTCAA
*
43530001 TCACATGATTGGAAATAGCTTGAGTTTTTCTCTCAAGCTGAACTTCCAGTTCTGCTTTCTGGCTA
196 TCACATGATTGGAAATAGCTTGAGTTTTTCTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTA
* * * *
43530066 TGCAGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCCCCTGACCTGAGTTGA
261 TGCAAGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTGA
* *
43530131 TGCTTCATCGCCTTTCACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGGGACTCCA
326 TGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCA
* ** *
43530196 TGTCTGCTAGCAAATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAGCGATTCTTTCTCG
391 TGTCTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCA
* * *
43530261 TTGTCCTCAAACTTCTTTGTGAGCGCCAAAAGTTCTTCTTGTCTCTGTTTTGATATCATCTCGAG
456 TTATCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTC-GTTTTGATATCATCTCGAG
* * *
43530326 TTCTGAAATTTGGGATCGCAGTCCTAAAC
520 TTCTGAAATTTGGGATTGCAGTCCTATAT
* * **
43530355 TTTCCTCCCTCAGCTGACCATTCTCTTTGATTTTAGTTCGCAAATCCTCTTCCAACTCACCTTTC
1 TTTCCTCCCTCAGCTGACCATTCTCTTTGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTC
* * * * *
43530420 TGATTCTTTAAAGAATTG-ACATCAAATTCTAGTTCCTTCATTTGTGCCAGCAAACCCTCTTTCT
66 TGGTTCTTTAGAGAAATGAAC-TCCAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCT
* * * *
43530484 CCTGCAGAACTCTTTGTTGATCCTCGGTCTTGCTTGCTATCTCTTCTTTTGCATTTTCTATCTTA
130 CCTGCAGAACTCTCTGTTGATCCTCGGTCTTGCTTACTATCTCTTCTTTTGCCTTTTCTATCTCA
* * * * *
43530549 ATCACATGATCGGAAATAGCTCGAGTTTTACTCTCAAGTTGAACTTCAAGTTCTGCTTTCTGACT
195 ATCACATGATTGGAAATAGCTTGAGTTTTTCTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCT
* * *
43530614 CTGCAAGGACTCCAGCTCCTGCTGCAAATTATTTATCTGATCCATCAAGCTCTTGACTTGAGTCG
260 ATGCAAGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTG
** * * * *
43530679 ATGCTTCATCATCTTTTACTGCAATATGCTCTTCCAACTGAGCTTTCTGGGTGCGTAGTGACTCC
325 ATGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCC
* *
43530744 ATGTCTGCTAGCAGATTGTTGATCTGCACTAT-AAGATTCTCCACTCTAGACAATGATTCTTTCT
390 ATGTCTGCTAGCAGATTGTTGATCTGCACTGTCAA-ATTCTCCACTCTAGATAATGATTCTTTCT
* * * * * *
43530808 CATTATCCTCAAATTTCTTTGCGAGAGTCAAAAGTTCTTCTTCTCTCTTTTTTGACATCATCTCA
454 CATTATCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTC-GTTTTGATATCATCTCG
43530873 AGTTCTGAAATTTGGGATTGCAGTCCTATAT
518 AGTTCTGAAATTTGGGATTGCAGTCCTATAT
*
43530904 TTACCTC
1 TTTCCTC
43530911 TCCCAGCCGT
Statistics
Matches: 989, Mismatches: 111, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
548 5 0.01
549 979 0.99
550 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (548 bp):
TTTCCTCCCTCAGCTGACCATTCTCTTTGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTC
TGGTTCTTTAGAGAAATGAACTCCAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTC
CTGCAGAACTCTCTGTTGATCCTCGGTCTTGCTTACTATCTCTTCTTTTGCCTTTTCTATCTCAA
TCACATGATTGGAAATAGCTTGAGTTTTTCTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTA
TGCAAGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTGA
TGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCA
TGTCTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCA
TTATCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTCGTTTTGATATCATCTCGAGT
TCTGAAATTTGGGATTGCAGTCCTATAT
Found at i:43536267 original size:117 final size:117
Alignment explanation
Indices: 43536144--43536429 Score: 394
Period size: 117 Copynumber: 2.4 Consensus size: 117
43536134 TGCTTGCATT
* * *
43536144 CATTGAATCCCTCA-ACTCCCTCAGCTCAGCTTCACAACTGGCAAGCTTCTCTTTAAGCTCACCA
1 CATTGAATCCCT-AGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACCA
* *
43536208 TTTTCGTGTTCTAGCCTTGAAATGGATTCAGTCAATGAATTCTTGCCTGCCTC
65 TTTTCGTGCTCTAGCCTTGAAATGGATTCAGTCAATGAATTCTTGCATGCCTC
* * * * **
43536261 CATTGAATCCCTAGATTTCCTCAGCTCAACTTCACAGGTAGCAAGCTTCTCTTTAAGGTGTCCAT
1 CATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACCAT
** * *
43536326 TTTCGTGCTCTAGCCTTGAAATGGATTCAGTCCGTGCATTTTTGCATGCCTC
66 TTTCGTGCTCTAGCCTTGAAATGGATTCAGTCAATGAATTCTTGCATGCCTC
* * *
43536378 CATAGTATCCCTAGACTTCCTCACCTCAGCTTCACAAGTAGCAAGCTTCTCT
1 CATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCT
43536430 CCTAGATTTC
Statistics
Matches: 147, Mismatches: 21, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
116 1 0.01
117 146 0.99
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (117 bp):
CATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACCAT
TTTCGTGCTCTAGCCTTGAAATGGATTCAGTCAATGAATTCTTGCATGCCTC
Found at i:43536481 original size:117 final size:117
Alignment explanation
Indices: 43536115--43536483 Score: 373
Period size: 117 Copynumber: 3.2 Consensus size: 117
43536105 CTTTCAGTTT
* * * * * * * * *
43536115 GATTCATTCATTGCATTTTTGCTTGCATTCATTGAATCCCTCA-ACTCCCTCAGCTCAGCTTCAC
1 GATTCAGTCAATGCATTTTTGCATGCCTCCATAGAATCCCT-AGACTTCCTCACCTCAACTTCAC
* * * * ** * *
43536179 AACTGGCAAGCTTCTCTTTAAGCTCACCATTTTCGTGTTCTAGCCTTGAAATG
65 AAGTAGCAAGCTTCTCTCTAAGATGTCCATTATCGTGCTCTAGCCTTGAAATG
* * * * * *
43536232 GATTCAGTCAATGAATTCTTGCCTGCCTCCATTGAATCCCTAGATTTCCTCAGCTCAACTTCACA
1 GATTCAGTCAATGCATTTTTGCATGCCTCCATAGAATCCCTAGACTTCCTCACCTCAACTTCACA
* * * *
43536297 GGTAGCAAGCTTCTCTTTAAGGTGTCCATTTTCGTGCTCTAGCCTTGAAATG
66 AGTAGCAAGCTTCTCTCTAAGATGTCCATTATCGTGCTCTAGCCTTGAAATG
** * *
43536349 GATTCAGTCCGTGCATTTTTGCATGCCTCCATAGTATCCCTAGACTTCCTCACCTCAGCTTCACA
1 GATTCAGTCAATGCATTTTTGCATGCCTCCATAGAATCCCTAGACTTCCTCACCTCAACTTCACA
* * * * *
43536414 AGTAGCAAGCTTCTCTCCT-AGATTTCTATTATCTTGCTCTAGCCTTGAATTC
66 AGTAGCAAGCTTCTCT-CTAAGATGTCCATTATCGTGCTCTAGCCTTGAAATG
*
43536466 GATTCAGACAATGCATTT
1 GATTCAGTCAATGCATTT
43536484 CTGGCCGTCT
Statistics
Matches: 211, Mismatches: 39, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
116 1 0.00
117 209 0.99
118 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.36
Consensus pattern (117 bp):
GATTCAGTCAATGCATTTTTGCATGCCTCCATAGAATCCCTAGACTTCCTCACCTCAACTTCACA
AGTAGCAAGCTTCTCTCTAAGATGTCCATTATCGTGCTCTAGCCTTGAAATG
Found at i:43539262 original size:35 final size:35
Alignment explanation
Indices: 43539223--43539291 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
43539213 TCTAAGATCA
* *
43539223 CATATCTCTGAAGATCACCTTCCATATTTGCCAAT
1 CATATCTCTAAAGATCACCTTCCATATTTACCAAT
* *
43539258 CATATCTTTAAAGATCACTTTCCATATTTACCAA
1 CATATCTCTAAAGATCACCTTCCATATTTACCAA
43539292 GCTCTGCAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (35 bp):
CATATCTCTAAAGATCACCTTCCATATTTACCAAT
Found at i:43549757 original size:31 final size:31
Alignment explanation
Indices: 43549698--43549758 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
43549688 TTGAAATGTT
* *
43549698 ACATTTTAGTCACTTACATTATTATATTGTA
1 ACATTTTAGTCACTGACATTAATATATTGTA
*
43549729 ACATTTTAGTCACTGAGCGTTAAT-TATTGT
1 ACATTTTAGTCACTGA-CATTAATATATTGT
43549759 TAACGATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (31 bp):
ACATTTTAGTCACTGACATTAATATATTGTA
Found at i:43553897 original size:152 final size:148
Alignment explanation
Indices: 43553675--43554169 Score: 613
Period size: 152 Copynumber: 3.3 Consensus size: 148
43553665 CAATTGTTCG
* * * *
43553675 TATTTTGGCCCTCTGTTCATATTTTTTTCCAAATTTTATTACTTGTAAAAAATATAATATTTTCT
1 TATTTCGGCCCTTTGTTCATATTTTTTTCCAGATTTTATTACTT-TAAAAAATATACTATTTTCT
* * * *
43553740 AATTTTCTTATTATACATTATTTTAGTACATTATATTTTAAATGTACTAAATTTAGTATGTTTTT
65 AATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTA-TTAATTTAGT-TGTTTTT
43553805 TAAATAAA-TTAAAAAAATCTT
128 TAAATAAATTTAAAAAAA-CTT
**
43553826 TA-TTCGGCCCTTTGTT-AGTATTTTTTTCTGGATTTTATTACTTTCAATAAAAATATACTATTT
1 TATTTCGGCCCTTTGTTCA-TATTTTTTTCCAGATTTTATTACTTT--A-AAAAATATACTATTT
* * *
43553889 TCTAATTTTATTGTTTTATATTATTTTAGTACATCA-AGTTTGAAATGTATTAATTTAG-TGTTT
62 TCTAATTTTATTATTTTACATTATTTTAGTACATTATA-TTTGAAATGTATTAATTTAGTTGTTT
43553952 TTTAAATAAATTTTAAAAAAACTCT
126 TTTAAATAAA-TTTAAAAAAACT-T
* * *
43553977 TATTTCGGCCTTTTGTTCGTATTTTTTTCCAGAGTTTATTACTTTTAAAAAATATACTATTTTCT
1 TATTTCGGCCCTTTGTTCATATTTTTTTCCAGATTTTATTAC-TTTAAAAAATATACTATTTTCT
* *
43554042 AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTT
65 AATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGT-TGTTTTTT
* *
43554107 AAATAAATTTTTAAAAAACCAT
129 AAATAAA--TTTAAAAAAACTT
* *
43554129 TATTTCGGCCCTTTGTTCATTTTTTTTCTCCGGATTTTATT
1 TATTTCGGCCCTTTGTTCATATTTTTT-TCCAGATTTTATT
43554170 CATTCATTTA
Statistics
Matches: 298, Mismatches: 30, Indels: 30
0.83 0.08 0.08
Matches are distributed among these distances:
149 17 0.06
150 103 0.35
151 25 0.08
152 128 0.43
153 25 0.08
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (148 bp):
TATTTCGGCCCTTTGTTCATATTTTTTTCCAGATTTTATTACTTTAAAAAATATACTATTTTCTA
ATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTTGTTTTTTAA
ATAAATTTAAAAAAACTT
Found at i:43554179 original size:84 final size:84
Alignment explanation
Indices: 43554091--43554253 Score: 222
Period size: 85 Copynumber: 1.9 Consensus size: 84
43554081 AAATGTATTA
** * * *
43554091 ATTTACTGTGTTTTTT-AAATAAATTT-TTAAAAAACCATTATTTCGGCCCTTTGTTCATTTTTT
1 ATTTACTGTGTTTTTTAAAATAAATTTAAAAAAAAAAC-TTATTTCGGCACTTTGTTCATATTTT
*
43554154 TTCTCCGGATTTTATTCATTC
65 TT-ACCGGATTTTATTCATTC
* *
43554175 ATTTAGTGTGTTTTTTAAAATAAATTTAAAAAAAAAACTTATTTCGGCACTTTGTTCGTATTTTT
1 ATTTACTGTGTTTTTTAAAATAAATTTAAAAAAAAAACTTATTTCGGCACTTTGTTCATATTTTT
43554240 TACCGGATTTTATT
66 TACCGGATTTTATT
43554254 ACTTTCAATA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
84 27 0.39
85 35 0.51
86 7 0.10
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (84 bp):
ATTTACTGTGTTTTTTAAAATAAATTTAAAAAAAAAACTTATTTCGGCACTTTGTTCATATTTTT
TACCGGATTTTATTCATTC
Found at i:43556313 original size:27 final size:27
Alignment explanation
Indices: 43556283--43556341 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
43556273 AATAATATAT
43556283 AAAAAT-TGAAAATTTTATAAAACTAAA
1 AAAAATATGAAAATTTTA-AAAACTAAA
** * *
43556310 AAAAATATTCAAATTTTAGAAACTTAA
1 AAAAATATGAAAATTTTAAAAACTAAA
43556337 AAAAA
1 AAAAA
43556342 CTTAAAACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 18 0.67
28 9 0.33
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (27 bp):
AAAAATATGAAAATTTTAAAAACTAAA
Found at i:43556314 original size:28 final size:27
Alignment explanation
Indices: 43556301--43556358 Score: 55
Period size: 27 Copynumber: 2.1 Consensus size: 27
43556291 AAAATTTTAT
*
43556301 AAAACTAAAAAAAATATTCAAATTTTA
1 AAAACTAAAAAAAATATTAAAATTTTA
* * * *
43556328 GAAACTTAAAAAAA-CTTAAAACTTTCA
1 AAAACTAAAAAAAATATTAAAA-TTTTA
43556355 AAAA
1 AAAA
43556359 ATATATTTAG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.26
Consensus pattern (27 bp):
AAAACTAAAAAAAATATTAAAATTTTA
Found at i:43557991 original size:17 final size:17
Alignment explanation
Indices: 43557969--43558022 Score: 65
Period size: 17 Copynumber: 3.0 Consensus size: 17
43557959 TTAATTACTT
43557969 TTTAAAAATATAAAAAA
1 TTTAAAAATATAAAAAA
43557986 TTTAAAAATATATAAAATTA
1 TTTAAAAATATA-AAAA--A
43558006 TTT-AAAATATTAAAAAA
1 TTTAAAAATA-TAAAAAA
43558023 ATGTTTGACA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 13 0.39
18 4 0.12
19 10 0.30
20 6 0.18
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTTAAAAATATAAAAAA
Found at i:43558000 original size:19 final size:18
Alignment explanation
Indices: 43557969--43558022 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 18
43557959 TTAATTACTT
43557969 TTTAAAA-ATATAAAAAA
1 TTTAAAATATATAAAAAA
*
43557986 TTTAAAAATATATAAAATTA
1 TTT-AAAATATATAAAA-AA
43558006 TTTAAAATAT-TAAAAAA
1 TTTAAAATATATAAAAAA
43558023 ATGTTTGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 4 0.12
18 9 0.28
19 15 0.47
20 4 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTTAAAATATATAAAAAA
Found at i:43558021 original size:9 final size:9
Alignment explanation
Indices: 43557970--43558021 Score: 61
Period size: 9 Copynumber: 5.8 Consensus size: 9
43557960 TAATTACTTT
43557970 TTAAAAATA
1 TTAAAAATA
*
43557979 TAAAAAAT-
1 TTAAAAATA
43557987 TTAAAAATA
1 TTAAAAATA
*
43557996 TATAAAATTA
1 T-TAAAAATA
*
43558006 TTTAAAATA
1 TTAAAAATA
43558015 TTAAAAA
1 TTAAAAA
43558022 AATGTTTGAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
8 7 0.20
9 20 0.57
10 8 0.23
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TTAAAAATA
Found at i:43558838 original size:13 final size:13
Alignment explanation
Indices: 43558822--43558854 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
43558812 TTTAAACCAA
43558822 ACTTTTCCACAGC
1 ACTTTTCCACAGC
43558835 ACTTTTCCACAGC
1 ACTTTTCCACAGC
43558848 ACTTTTC
1 ACTTTTC
43558855 AAAAGTAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (13 bp):
ACTTTTCCACAGC
Found at i:43559311 original size:12 final size:12
Alignment explanation
Indices: 43559296--43559320 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43559286 TTATTAATTT
43559296 ACTGATTAACTA
1 ACTGATTAACTA
43559308 ACTGATTAACTA
1 ACTGATTAACTA
43559320 A
1 A
43559321 ATTAAATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ACTGATTAACTA
Found at i:43563210 original size:60 final size:58
Alignment explanation
Indices: 43563140--43563252 Score: 154
Period size: 60 Copynumber: 1.9 Consensus size: 58
43563130 AAGACAATCA
* * *
43563140 AATAGTTGAGTGACTATTTTTTAACTTTTCATAGTTGAGTGATCAAAAAAGAAATTTATT
1 AATAATTGAGTAACTATTTTATAACTTTTCATAGTTGAGTGA-CAAAAAA-AAATTTATT
* * *
43563200 AATAATTGAGTAACTATTTTATAATTTTTTATAGTTGGGTGACAAAAAAAAAT
1 AATAATTGAGTAACTATTTTATAACTTTTCATAGTTGAGTGACAAAAAAAAAT
43563253 CATAATTGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 4 0.09
59 7 0.15
60 36 0.77
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.41
Consensus pattern (58 bp):
AATAATTGAGTAACTATTTTATAACTTTTCATAGTTGAGTGACAAAAAAAAATTTATT
Found at i:43563577 original size:30 final size:29
Alignment explanation
Indices: 43563517--43563587 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
43563507 AAATCTAATT
* *
43563517 AAATAAA-ATTTTTATATTAATATTACATAA
1 AAATAAATA-TTTTATATTAATATAAAAT-A
*
43563547 AAATAACTATTTTATTATTAA-ATAAAATA
1 AAATAAATATTTTA-TATTAATATAAAATA
43563576 AAATAAATATTT
1 AAATAAATATTT
43563588 CTTCCCCACC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 12 0.34
30 16 0.46
31 7 0.20
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (29 bp):
AAATAAATATTTTATATTAATATAAAATA
Found at i:43566198 original size:16 final size:16
Alignment explanation
Indices: 43566177--43566211 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
43566167 ATTGTTTTAG
43566177 AAAAAAAT-ATTTCTA
1 AAAAAAATAATTTCTA
*
43566192 AAAAAAATAATTTTTA
1 AAAAAAATAATTTCTA
43566208 AAAA
1 AAAA
43566212 TTTTTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
AAAAAAATAATTTCTA
Found at i:43566305 original size:24 final size:25
Alignment explanation
Indices: 43566255--43566302 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
43566245 ATATTTGTTT
*
43566255 TTATATCATAAAAAATTAAAATTAA
1 TTATATCATAAAAAATTAAAATAAA
*
43566280 TTATAT-ATATAAAA-TAAAATAAA
1 TTATATCATAAAAAATTAAAATAAA
43566303 ATTCAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 8 0.38
24 7 0.33
25 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
TTATATCATAAAAAATTAAAATAAA
Found at i:43575039 original size:12 final size:12
Alignment explanation
Indices: 43575019--43575053 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
43575009 GGCCAGTACA
43575019 AATAACAAAAAT
1 AATAACAAAAAT
*
43575031 AATAGCAAAAAT
1 AATAACAAAAAT
*
43575043 AACAACAAAAA
1 AATAACAAAAA
43575054 CAGCAGAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.74, C:0.11, G:0.03, T:0.11
Consensus pattern (12 bp):
AATAACAAAAAT
Done.