genome.fa.s10.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  15  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4703053--4703096	22	2.0	23	86	13	65	2	15	4	77	1.04
4705889--4705923	6	5.8	6	93	0	61	17	2	0	80	0.84
4711577--4711614	18	2.1	19	85	5	51	34	2	0	63	1.09
4711825--4711879	18	3.1	17	81	5	56	43	3	3	49	1.37
4712247--4712303	21	2.7	21	94	0	105	42	10	10	36	1.74
4712495--4712533	19	2.0	21	85	10	55	15	10	5	69	1.34
4715643--4715675	15	2.2	15	94	0	57	24	21	12	42	1.86
4724526--4724880	44	8.1	44	63	13	120	29	18	25	26	1.98
4724514--4724931	132	3.2	132	93	1	696	29	19	25	26	1.98
4732292--4732348	28	1.9	31	89	10	93	49	1	1	47	1.22
4732946--4732985	21	1.9	21	84	0	53	67	10	5	17	1.37
4735833--4735874	2	21.5	2	95	4	77	52	0	0	47	1.00
4742011--4742227	94	2.3	94	92	3	366	52	3	6	36	1.44
4751335--4751668	168	2.0	168	97	0	632	31	24	17	26	1.97
4761812--4761851	21	1.9	21	84	0	53	57	2	5	35	1.34
4766912--4767039	29	4.3	29	78	5	121	44	25	11	17	1.83
4766913--4767025	61	1.9	58	85	5	154	43	24	11	20	1.85
4767156--4767309	54	2.9	54	83	0	200	27	26	15	30	1.96
4771268--4771397	29	4.3	30	69	13	104	46	23	10	19	1.80
4771245--4771412	91	1.9	90	86	3	239	47	20	11	20	1.81
4791620--4791664	23	1.9	24	90	4	74	42	13	4	40	1.64
4791620--4791678	21	2.7	22	84	10	68	40	13	6	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4792997--4793304	42	7.3	42	98	0	580	20	19	26	33	1.97
4793275--4793388	42	2.7	42	94	0	192	32	23	22	21	1.98
4792997--4793417	126	3.3	126	87	0	331	24	19	24	30	1.98
4798761--4798825	9	7.2	9	76	0	67	30	3	15	50	1.59
4798761--4798825	27	2.4	27	92	0	103	30	3	15	50	1.59
4802490--4802759	84	3.3	83	79	8	246	31	21	16	30	1.95
4803024--4803179	84	1.9	84	87	2	233	34	21	14	29	1.93
4803020--4803196	84	2.1	84	82	6	216	33	22	15	28	1.94
4803039--4803233	84	2.3	84	78	5	189	32	20	16	30	1.95
4803376--4803629	90	3.0	81	79	13	278	43	26	1	27	1.66
4803500--4803553	7	7.9	7	78	15	51	40	44	0	14	1.46
4803621--4803660	14	2.9	14	80	0	53	32	45	0	22	1.53
4803906--4803949	21	2.1	21	87	4	63	45	25	0	29	1.54
4804290--4804685	115	3.5	114	85	1	488	28	28	21	21	1.99
4804324--4804814	115	4.3	113	79	7	302	29	27	21	21	1.99
4806719--4806808	7	12.7	7	73	18	71	0	20	0	80	0.72
4806727--4806810	11	8.0	11	71	20	56	0	19	0	80	0.70
4806727--4806810	18	4.9	17	80	15	93	0	19	0	80	0.70
4806728--4806810	23	3.6	22	77	19	89	0	19	0	80	0.71
4806730--4806807	35	2.3	34	88	6	113	0	19	0	80	0.71
4806719--4806810	37	2.5	35	79	20	109	0	20	0	79	0.73
4806809--4806863	26	2.3	23	84	9	65	9	23	45	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4807066--4807098	14	2.2	16	89	10	52	0	18	0	81	0.68
4807455--4807620	29	5.6	29	74	5	120	37	6	20	36	1.77
4807818--4808483	78	8.7	78	85	5	848	37	20	16	25	1.93
4807818--4808483	228	2.9	228	91	2	1052	37	20	16	25	1.93
4809629--4809663	14	2.5	14	95	0	61	20	34	11	34	1.88
4820274--4820347	25	2.9	25	78	7	78	55	9	8	27	1.60
4820772--4820826	11	5.4	10	76	18	51	0	21	0	78	0.76
4820763--4820827	31	2.2	31	86	10	91	1	21	0	76	0.86
4820782--4820833	24	2.2	24	86	6	70	0	21	0	78	0.74
4820780--4820833	11	4.7	11	77	6	54	0	20	0	79	0.73
4820991--4821035	6	7.0	6	82	12	54	0	22	0	77	0.76
4821116--4821165	20	2.5	20	81	12	57	0	32	0	68	0.90
4821120--4821166	21	2.2	22	84	3	60	0	29	0	70	0.88
4821417--4821551	58	2.3	59	80	1	155	40	5	19	34	1.76
4821417--4821551	29	4.6	29	78	0	135	40	5	19	34	1.76
4821548--4821581	8	4.1	8	85	7	50	11	0	5	82	0.83
4822974--4823032	29	2.0	30	83	9	77	52	6	3	37	1.45
4823639--4823674	14	2.6	14	90	0	54	22	19	0	58	1.40
4826480--4826548	34	2.0	34	85	0	93	37	18	17	26	1.93
4834406--4834462	27	2.1	27	96	0	105	31	5	10	52	1.58
4849202--4850027	45	18.5	44	72	9	562	27	22	18	32	1.97
4849153--4849485	92	3.7	88	87	4	407	27	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4849188--4849485	91	3.3	89	88	2	407	28	23	17	30	1.97
4849476--4850017	89	6.1	89	94	0	895	26	22	19	31	1.97
4850893--4850917	13	1.9	13	100	0	50	56	8	24	12	1.62
4852003--4852074	37	1.9	37	94	0	126	47	1	23	27	1.60
4853921--4853962	19	2.2	19	83	8	50	40	9	21	28	1.84
4853992--4854017	13	2.0	13	100	0	52	46	15	7	30	1.74
4858788--4859482	89	7.8	89	92	1	1086	25	23	18	31	1.98
4864593--4864644	18	2.7	20	79	11	63	34	0	3	61	1.14
4869109--4869277	18	9.4	18	77	12	134	39	10	11	38	1.76
4869109--4869283	37	4.8	36	76	8	160	40	10	11	38	1.75
4869128--4869296	55	3.1	53	78	9	171	39	10	11	38	1.77
4869226--4869285	17	3.1	21	79	20	85	41	11	11	35	1.78
4869947--4869994	17	2.8	17	77	0	60	6	16	16	60	1.55
4870076--4870150	7	11.1	7	69	17	52	1	28	0	70	0.95
4870072--4870147	11	6.9	11	72	19	61	1	26	0	72	0.93
4870669--4870803	30	4.6	29	68	15	73	40	5	21	32	1.75
4871144--4872167	230	4.4	228	87	3	1376	34	19	15	30	1.93
4871144--4872167	76	13.3	76	87	3	1383	34	19	15	30	1.93
4873017--4873066	1	50.0	1	79	0	55	0	2	8	90	0.54
4873027--4873066	7	5.9	7	88	5	64	0	0	10	90	0.47
4873026--4873066	21	2.0	21	95	0	73	0	0	9	90	0.46
4878219--4878255	4	9.2	4	93	0	65	48	2	24	24	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4880362--4880576	18	12.1	17	71	20	113	42	11	11	34	1.77
4880362--4880576	35	6.1	35	75	13	142	42	11	11	34	1.77
4880415--4880601	53	3.5	52	72	14	148	43	10	10	35	1.74
4880413--4880601	36	5.3	36	78	11	162	43	10	10	34	1.74
4880481--4880602	37	3.3	36	82	10	124	45	10	10	33	1.74
4881274--4881321	17	3.0	15	77	14	51	10	12	12	64	1.50
4881402--4881462	7	8.1	7	75	12	50	1	24	0	73	0.92
4881407--4881462	11	4.9	11	77	18	53	1	25	0	73	0.93
4881422--4881454	14	2.4	14	94	0	57	0	24	0	75	0.80
4881577--4881612	13	2.7	13	91	4	54	5	16	2	75	1.12
4888103--4888250	72	2.1	72	96	0	269	35	13	23	27	1.93
4888239--4888546	144	2.1	144	96	1	564	30	18	24	26	1.97
4889886--4890231	37	9.4	37	97	0	633	26	17	15	39	1.90
4905816--4905871	28	1.9	30	75	13	55	60	0	1	37	1.07
4906870--4906897	7	4.0	7	100	0	56	42	14	0	42	1.45
4910698--4910737	19	2.0	19	85	9	53	45	2	0	52	1.14
4915079--4915299	100	2.2	100	83	6	270	30	17	20	31	1.96
4915833--4915861	15	1.9	15	100	0	58	68	0	0	31	0.89
4916444--4916485	14	2.7	15	82	14	50	40	0	0	59	0.97
4916442--4916480	14	2.9	14	88	7	55	41	0	0	58	0.98
4923046--4923081	15	2.3	16	90	4	56	8	22	0	69	1.15
4923045--4923082	16	2.4	17	82	13	53	7	21	0	71	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4934335--4934519	41	4.5	41	93	0	307	23	22	22	30	1.99
4934702--4934726	12	2.1	12	100	0	50	52	8	0	40	1.31
4935157--4935194	2	19.5	2	89	5	60	50	2	0	47	1.15
4935172--4935247	39	1.9	40	82	12	95	42	13	3	40	1.62
4940101--4940176	34	2.2	34	88	0	107	18	14	31	35	1.91
4941929--4942033	43	2.4	43	83	0	129	30	28	15	25	1.96
4946580--4946698	60	2.0	60	86	3	168	43	10	10	34	1.75
4947146--4947175	13	2.4	13	94	5	53	70	0	0	30	0.88
4947162--4947242	40	2.0	42	85	4	112	49	6	3	40	1.45
4947484--4947523	20	1.9	22	90	10	66	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136