genome.fa.s10.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  19  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6063843--6063933	47	2.0	46	93	2	155	12	25	16	46	1.81
6068774--6068840	35	1.9	35	82	11	84	50	2	10	35	1.52
6068959--6068983	2	12.5	2	100	0	50	48	0	0	52	1.00
6069645--6069674	10	2.8	11	95	5	53	80	0	6	13	0.91
6070359--6070402	16	2.7	17	86	10	65	29	27	2	40	1.68
6076614--6076656	21	2.0	23	86	9	63	72	11	9	6	1.29
6076991--6077087	40	2.5	40	77	5	99	35	21	20	22	1.96
6077142--6077416	41	6.7	41	89	1	390	23	21	25	29	1.99
6077141--6077416	122	2.2	123	87	3	394	23	21	26	28	1.99
6077944--6078119	89	2.0	89	88	0	262	25	1	30	43	1.62
6078133--6078162	15	2.0	15	93	0	51	23	0	33	43	1.54
6078192--6078954	108	7.0	108	95	3	1359	41	15	9	33	1.81
6078711--6078930	119	1.8	119	95	1	397	41	15	9	32	1.80
6079042--6079087	21	2.2	21	84	7	58	23	50	2	23	1.61
6082393--6082619	85	2.6	85	90	2	357	20	18	31	29	1.96
6082393--6082620	43	5.3	43	89	3	352	20	17	31	30	1.96
6086570--6086633	30	2.1	31	85	8	87	45	1	1	51	1.20
6086572--6086622	10	5.1	10	77	13	52	41	1	0	56	1.10
6088159--6088216	29	2.1	27	84	9	73	58	8	5	27	1.49
6092052--6092128	18	4.1	18	68	21	59	24	1	12	61	1.40
6092227--6092413	58	3.1	59	83	6	198	21	19	14	43	1.87
6092994--6093142	74	2.0	75	98	1	291	37	13	14	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6100123--6100404	27	10.4	27	80	6	243	21	14	19	45	1.85
6100123--6100404	54	5.2	54	82	2	298	21	14	19	45	1.85
6100119--6100404	81	3.5	80	85	2	367	21	13	19	45	1.85
6105306--6105337	4	7.8	4	96	3	55	21	0	0	78	0.76
6105607--6105668	29	2.1	29	88	5	90	33	11	8	46	1.69
6116673--6116702	2	15.5	2	93	6	53	50	0	0	50	1.00
6117921--6118167	123	2.0	124	99	0	487	43	9	8	37	1.69
6121389--6121473	24	3.4	23	71	16	71	25	9	1	63	1.32
6121443--6121510	30	2.3	28	79	16	75	25	11	4	58	1.51
6122710--6122762	25	2.2	25	83	6	65	47	5	16	30	1.70
6123375--6123421	23	2.0	24	83	4	60	55	14	12	17	1.70
6125073--6125097	8	3.1	8	100	0	50	52	0	0	48	1.00
6126753--6126796	3	14.7	3	95	0	79	29	0	2	68	1.02
6126840--6127137	74	4.0	74	100	0	596	36	13	4	45	1.62
6126841--6127103	27	10.5	26	67	26	160	36	13	4	45	1.63
6126884--6127136	26	10.2	26	64	23	107	36	13	3	46	1.62
6137139--6137242	44	2.5	41	80	17	131	36	31	3	27	1.75
6137154--6137244	46	2.0	46	93	4	159	38	31	4	25	1.76
6137222--6137260	16	2.4	16	100	0	78	20	38	5	35	1.75
6137930--6137986	29	2.0	29	82	6	71	33	0	1	64	1.04
6139134--6139180	11	4.2	11	78	13	51	21	2	6	70	1.20
6142044--6142072	14	2.1	14	100	0	58	37	27	13	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6143073--6143113	3	13.7	3	85	10	57	34	0	2	63	1.08
6147192--6147252	30	2.0	31	96	3	115	45	9	3	40	1.53
6150822--6150865	20	2.2	20	100	0	88	4	20	13	61	1.50
6151568--6151695	60	2.2	58	84	2	166	27	16	14	41	1.87
6157637--6157771	69	2.0	69	95	0	243	28	18	21	31	1.97
6159853--6159890	20	1.9	19	89	5	58	42	0	2	55	1.14
6162699--6162795	50	1.9	50	93	4	169	43	24	6	25	1.77
6165958--6166647	44	15.4	44	72	5	434	27	21	17	33	1.96
6166003--6166618	89	6.9	88	74	5	385	27	20	17	34	1.95
6166156--6166569	135	3.0	136	86	3	539	27	19	17	35	1.94
6166176--6166436	95	2.8	93	81	4	262	26	19	19	34	1.96
6166166--6166648	135	3.6	135	84	2	513	27	20	16	34	1.95
6166650--6166764	44	2.6	44	80	0	131	34	18	18	28	1.94
6166841--6167044	44	4.5	44	72	15	153	31	20	17	30	1.95
6166699--6167046	140	2.5	140	89	0	527	30	19	17	31	1.95
6178765--6178829	3	21.0	3	72	12	51	61	1	7	29	1.33
6178825--6178860	18	2.0	18	94	0	63	36	5	22	36	1.78
6179460--6179508	24	2.0	24	96	0	89	14	46	4	34	1.63
6185158--6185197	14	2.9	14	84	0	53	42	17	7	32	1.77
6185123--6185189	34	1.9	35	87	3	100	44	13	10	31	1.77
6187258--6187292	16	2.1	17	89	5	54	28	0	40	31	1.57
6189616--6189651	15	2.4	15	95	0	63	55	0	13	30	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6191314--6191385	28	2.6	26	75	20	67	58	2	2	36	1.27
6191353--6191390	18	2.1	18	85	9	51	68	2	0	28	1.03
6191686--6191725	21	1.9	21	94	0	71	55	12	12	20	1.69
6196134--6196231	33	2.9	33	70	16	94	25	28	16	29	1.97
6208398--6208445	13	3.7	12	76	17	51	81	2	2	14	0.88
6208905--6208973	27	2.6	27	82	8	79	68	0	10	21	1.19
6212713--6212793	35	2.3	35	81	8	85	35	7	6	50	1.55
6212780--6212813	16	2.0	17	88	11	52	47	11	0	41	1.40
6215940--6215980	6	6.8	6	100	0	82	34	0	34	31	1.58
6216155--6216184	14	2.2	14	94	5	53	30	0	0	70	0.88
6222009--6222053	3	15.0	3	100	0	90	66	0	0	33	0.92
6226704--6226741	18	2.1	19	90	5	60	28	7	5	57	1.49
6226700--6226783	41	2.1	40	82	10	102	27	9	2	60	1.40
6227099--6227142	20	2.3	19	81	18	56	34	13	2	50	1.55
6227105--6227140	18	1.9	20	88	11	58	33	16	2	47	1.61
6228886--6228950	18	3.4	18	66	25	53	66	23	4	6	1.33
6229066--6229114	19	2.6	19	86	0	71	57	24	6	12	1.58
6229710--6229737	13	2.2	13	100	0	56	60	0	32	7	1.24
6231465--6231615	33	4.5	33	75	18	134	20	19	28	31	1.97
6231392--6231588	102	1.9	102	89	0	304	21	18	26	33	1.96
6240838--6240880	14	3.1	14	83	9	54	18	11	0	69	1.17
6241713--6241752	21	1.9	21	94	0	71	52	2	17	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6248022--6248359	169	2.0	169	97	0	640	36	9	16	38	1.81
6248358--6248384	2	13.5	2	100	0	54	51	0	0	48	1.00
6255153--6255367	28	7.7	28	86	3	290	30	22	22	24	1.99
6255481--6255530	26	1.9	26	87	0	73	36	22	22	20	1.96
6255647--6255685	15	2.6	14	84	11	51	35	23	7	33	1.83
6258159--6258225	34	2.0	34	96	0	125	28	17	5	47	1.71
6261406--6261430	13	1.9	13	100	0	50	32	4	24	40	1.73
6264685--6264714	13	2.2	14	94	5	53	46	0	0	53	1.00
6273232--6273261	13	2.2	14	94	5	53	46	0	0	53	1.00
6278533--6278601	15	4.7	15	76	16	63	31	2	2	62	1.25
6278552--6278601	5	10.2	5	81	12	59	32	2	2	64	1.16
6288210--6288281	35	2.0	37	89	5	112	61	1	1	36	1.14
6288333--6288368	18	2.1	17	89	5	54	0	41	52	5	1.24
6288836--6288960	41	3.0	42	85	3	180	31	24	18	25	1.98
6288961--6289084	44	2.9	43	79	2	131	32	25	13	28	1.94
6303830--6304302	164	2.9	164	99	0	928	27	16	17	38	1.91
6307364--6307395	3	10.7	3	93	0	55	68	0	31	0	0.90
6308790--6308830	20	2.1	19	86	4	55	31	4	0	63	1.15
6318899--6318930	3	10.7	3	100	0	64	68	0	31	0	0.90
6322662--6322701	20	2.0	20	95	0	71	27	17	25	30	1.97
6323760--6323828	3	24.0	3	78	14	74	1	33	0	65	1.02
6323753--6323826	8	9.2	8	75	15	64	1	31	0	67	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6326826--6327004	88	2.0	89	98	1	351	50	8	5	35	1.57
6330098--6330185	41	2.1	41	82	0	104	31	19	21	27	1.97
6330980--6331214	121	1.9	122	95	0	427	30	8	16	44	1.78
6335116--6335163	17	2.8	16	78	12	51	37	0	16	45	1.48
6335667--6335728	21	3.0	21	88	4	92	14	25	19	40	1.90
6341256--6341310	29	1.9	28	82	10	67	36	12	1	49	1.52
6341804--6341938	71	1.9	71	90	0	216	30	18	17	33	1.94
6353601--6354008	45	9.1	45	83	4	466	31	15	22	30	1.95
6354024--6354322	44	6.8	44	77	4	246	31	17	21	29	1.96
6354067--6354314	89	2.8	87	83	8	256	29	18	22	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136