Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 22 of 136
Found at i:6906545 original size:101 final size:101
Alignment explanation
Indices: 6906358--6906546 Score: 224
Period size: 101 Copynumber: 1.9 Consensus size: 101
6906348 TTAAACTGTT
* * *
6906358 TTGTATATTATTTATTTGAAATTTCTTTTTACATATTATTTATTTTAAACTTTTTATATATTATT
1 TTGTATATTATTTATTTGAAATTTCGTTTTACATATTATTTACTTTAAACTTTTTATATATTACT
* * *
6906423 TTAAATTGTCTTCTATGTTATTTATTTTAAATTGCA
66 TCAAATTGTCTTATATATTATTTATTTTAAATTGCA
* * * *
6906459 TTGTATATTATTTATTT-TAATTT-GTTTTGCATATTA-TTACTTTGAATTGTTTTATACTATTT
1 TTGTATATTATTTATTTGAAATTTCGTTTTACATATTATTTACTTTAAACT-TTTTATA-TA-TT
6906521 ACTTCAAATTGT-TCTATATATTATTT
63 ACTTCAAATTGTCT-TATATATTATTT
6906547 TGTTTTGTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
98 9 0.12
99 18 0.24
100 8 0.11
101 39 0.53
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (101 bp):
TTGTATATTATTTATTTGAAATTTCGTTTTACATATTATTTACTTTAAACTTTTTATATATTACT
TCAAATTGTCTTATATATTATTTATTTTAAATTGCA
Found at i:6908154 original size:14 final size:14
Alignment explanation
Indices: 6908135--6908165 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6908125 ATGATTGTTT
*
6908135 TAATCTAAATTTAC
1 TAATCTAAATTAAC
6908149 TAATCTAAATTAAC
1 TAATCTAAATTAAC
6908163 TAA
1 TAA
6908166 GAATGCGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:6913499 original size:214 final size:215
Alignment explanation
Indices: 6913119--6913547 Score: 851
Period size: 214 Copynumber: 2.0 Consensus size: 215
6913109 TCAAGGCCCA
6913119 AGCCGAGCCCAACCCGGTCTGACCCGTTTTAAGTTTATAATATTTTATATTATGTTATTTTTATA
1 AGCCGAGCCCAACCCGGTCTGACCCGTTTTAAGTTTATAATATTTTATATTATGTTATTTTTATA
6913184 TATTATCCTAATAACACACTTTATTAATCCTAAACTAGATAATTTCAATCATCTTTAACTTCATC
66 TATTATCCTAATAACACACTTTATTAATCCTAAACTAGATAATTTCAATCATCTTTAACTTCATC
6913249 AAATAAACCCTAATATAACACAACCCATAAACAATTTTGAAGAAGGCAGCAGCTAATTTATGGTG
131 AAATAAACCCTAATATAACACAACCCATAAACAATTTTGAAGAAGGCAGCAGCTAATTTATGGTG
6913314 CAATTCAATGCAAAAATTAT
196 CAATTCAATGCAAAAATTAT
6913334 AGCCGAGCCC-ACCCGGTCTGACCCGTTTTAAGTTTATAATATTTTATATTATGTTATTTTTATA
1 AGCCGAGCCCAACCCGGTCTGACCCGTTTTAAGTTTATAATATTTTATATTATGTTATTTTTATA
6913398 TATTATCCTAATAACACACTTTATTAATCCTAAACTAGATAATTTCAATCATCTTTAACTTCATC
66 TATTATCCTAATAACACACTTTATTAATCCTAAACTAGATAATTTCAATCATCTTTAACTTCATC
6913463 AAATAAACCCTAATATAACACAACCCATAAACAATTTTGAAGAAGGCAGCAGCTAATTTATGGTG
131 AAATAAACCCTAATATAACACAACCCATAAACAATTTTGAAGAAGGCAGCAGCTAATTTATGGTG
6913528 CAATTCAATGCAAAAATTAT
196 CAATTCAATGCAAAAATTAT
6913548 TGAAGAAAAT
Statistics
Matches: 214, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
214 204 0.95
215 10 0.05
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.34
Consensus pattern (215 bp):
AGCCGAGCCCAACCCGGTCTGACCCGTTTTAAGTTTATAATATTTTATATTATGTTATTTTTATA
TATTATCCTAATAACACACTTTATTAATCCTAAACTAGATAATTTCAATCATCTTTAACTTCATC
AAATAAACCCTAATATAACACAACCCATAAACAATTTTGAAGAAGGCAGCAGCTAATTTATGGTG
CAATTCAATGCAAAAATTAT
Found at i:6919529 original size:43 final size:43
Alignment explanation
Indices: 6919472--6919643 Score: 344
Period size: 43 Copynumber: 4.0 Consensus size: 43
6919462 ATACAAGTGG
6919472 GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
1 GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
6919515 GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
1 GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
6919558 GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
1 GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
6919601 GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
1 GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
6919644 AGTGATGATA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 129 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (43 bp):
GCGAGTTGTATGCCTCAGCATGTTGGTACATCTATTTCAAAGT
Found at i:6926043 original size:39 final size:39
Alignment explanation
Indices: 6925978--6926090 Score: 131
Period size: 39 Copynumber: 2.9 Consensus size: 39
6925968 CATATATTTG
* * ** * * *
6925978 AAAT-AAATAAAATATATAAGTCAATCTAAAATAGTTTA
1 AAATAAAATAATATATAAAAGAAAATCTTAAATAATATA
* *
6926016 AAGTAAAATAATATATAAAAGAGAATCTTAAATAATATA
1 AAATAAAATAATATATAAAAGAAAATCTTAAATAATATA
6926055 AAATAAAA-AATATATAAAAGAAAATCTTAAATAATA
1 AAATAAAATAATATATAAAAGAAAATCTTAAATAATA
6926091 AAAGAAACAG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 30 0.47
39 34 0.53
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.28
Consensus pattern (39 bp):
AAATAAAATAATATATAAAAGAAAATCTTAAATAATATA
Found at i:6926049 original size:21 final size:20
Alignment explanation
Indices: 6926025--6926097 Score: 75
Period size: 21 Copynumber: 3.8 Consensus size: 20
6926015 AAAGTAAAAT
6926025 AATATATAAAAGAGAATCTTA
1 AATATATAAAAGA-AATCTTA
*
6926046 AATAATATAAAATAAA----A
1 AAT-ATATAAAAGAAATCTTA
6926063 AATATATAAAAGAAAATCTTA
1 AATATATAAAAG-AAATCTTA
6926084 AATA-ATAAAAGAAA
1 AATATATAAAAGAAA
6926098 CAGTTTAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
16 8 0.18
17 7 0.16
19 3 0.07
20 7 0.16
21 10 0.23
22 9 0.20
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.25
Consensus pattern (20 bp):
AATATATAAAAGAAATCTTA
Found at i:6926056 original size:22 final size:21
Alignment explanation
Indices: 6926028--6926097 Score: 64
Period size: 22 Copynumber: 3.6 Consensus size: 21
6926018 GTAAAATAAT
6926028 ATATAAAAGAGAATCTTAAATA
1 ATATAAAAGA-AATCTTAAATA
*
6926050 ATATAAAATAAA----AAAT-
1 ATATAAAAGAAATCTTAAATA
6926066 ATATAAAAGAAAATCTTAAAT-
1 ATATAAAAG-AAATCTTAAATA
6926087 A-ATAAAAGAAA
1 ATATAAAAGAAA
6926098 CAGTTTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
16 8 0.20
17 7 0.17
19 3 0.07
20 7 0.17
21 7 0.17
22 9 0.22
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.24
Consensus pattern (21 bp):
ATATAAAAGAAATCTTAAATA
Found at i:6926071 original size:16 final size:17
Alignment explanation
Indices: 6926045--6926078 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
6926035 AGAGAATCTT
*
6926045 AAATAATATAAAATAAA
1 AAATAATATAAAAGAAA
6926062 AAAT-ATATAAAAGAAA
1 AAATAATATAAAAGAAA
6926078 A
1 A
6926079 TCTTAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
AAATAATATAAAAGAAA
Found at i:6926106 original size:21 final size:21
Alignment explanation
Indices: 6926025--6926097 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 21
6926015 AAAGTAAAAT
*
6926025 AATATATAAAAGAGAATCTTA
1 AATATATAAAAGAAAATCTTA
*
6926046 AATAATATAAAA-TAAA----A
1 AAT-ATATAAAAGAAAATCTTA
6926063 AATATATAAAAGAAAATCTTA
1 AATATATAAAAGAAAATCTTA
6926084 AATA-ATAAAAGAAA
1 AATATATAAAAGAAA
6926098 CAGTTTAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
16 8 0.19
17 7 0.16
20 10 0.23
21 10 0.23
22 8 0.19
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.25
Consensus pattern (21 bp):
AATATATAAAAGAAAATCTTA
Found at i:6932628 original size:16 final size:16
Alignment explanation
Indices: 6932586--6932629 Score: 63
Period size: 16 Copynumber: 2.7 Consensus size: 16
6932576 GAAATTTATG
6932586 TATTAAAATAATAATTT
1 TATTAAAA-AATAATTT
6932603 TA-TAATAAAATAATTT
1 TATTAA-AAAATAATTT
6932619 TATTAAAAAAT
1 TATTAAAAAAT
6932630 CTACAACCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTAAAAAATAATTT
Found at i:6935505 original size:17 final size:17
Alignment explanation
Indices: 6935483--6935517 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
6935473 GGAGTACTAC
6935483 AATAATAAT-ATAATCAT
1 AATAATAATCAT-ATCAT
6935500 AATAATAATCATATCAT
1 AATAATAATCATATCAT
6935517 A
1 A
6935518 GGAATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAATAATCATATCAT
Found at i:6935675 original size:15 final size:14
Alignment explanation
Indices: 6935651--6935684 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
6935641 AAATGTGTCA
6935651 ATAAAAGTATGTGT
1 ATAAAAGTATGTGT
6935665 ATAATAAGTATGTGT
1 ATAA-AAGTATGTGT
6935680 A-AAAA
1 ATAAAA
6935685 AATTAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 6 0.32
15 11 0.58
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (14 bp):
ATAAAAGTATGTGT
Found at i:6937406 original size:44 final size:44
Alignment explanation
Indices: 6937358--6937758 Score: 335
Period size: 44 Copynumber: 8.9 Consensus size: 44
6937348 GAATTGTTGC
*
6937358 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTAGTAGT
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGT
* * *
6937402 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAAATTTATAACTCGTAGCT
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGA--T-T---T-GTAG-T
* * * *
6937454 TT-AATCTGTTCCCCTGCAAC-TCTAG-GAAAATAAGATTCGCTA-T
1 TTCAATCTGCTCCACTGCAACTTC-AGAG-AGATAAGATTTG-TAGT
* * * * * * *
6937497 CTTCCATCTACTCCACTGCAACTTTAGGGATATAAGATTTGTGGC
1 -TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGT
* ** * *
6937542 TTCAATCTGTTTTACTGTAACTTCAGAGAGATAAGATTTGTAGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGT
* *
6937586 TTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGT
* * * *
6937630 TTCAATATGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATT
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAGT
* * * * *
6937675 TTCAATCTGCTCCACTGCAACTTTAGGGAAATAAGAGTTGTGGCT
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAG-T
* * *
6937720 TT-AATCTACTCCTCTGCAACTTCAGGGAGATAAGATTTG
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG
6937759 CCACGATAAC
Statistics
Matches: 291, Mismatches: 48, Indels: 36
0.78 0.13 0.10
Matches are distributed among these distances:
43 1 0.00
44 183 0.63
45 68 0.23
46 3 0.01
47 1 0.00
48 1 0.00
49 1 0.00
50 2 0.01
51 28 0.10
52 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGT
Found at i:6937679 original size:133 final size:132
Alignment explanation
Indices: 6937351--6937758 Score: 338
Period size: 133 Copynumber: 3.0 Consensus size: 132
6937341 GATATAGGAA
* * * * * *
6937351 TTGTTGCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTAGTAGTTTCAATCTGCTCCA
1 TTGTAGCTTCAATATGCTCTACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATCTGCTCCA
* * * * ** *
6937416 CTGCAACTTTAGGGAGATAAAATTTATA-ACTCGTAGCTTTAATCTGTTCCCCTGCAAC-TCTAG
66 CTGCAACTTCA--GAG---AAA--TA-AGAGTTGTAGCTTCAATCTACTCCTCTGCAACTTC-AG
*
6937479 -GAAAATAAGAT
122 AG-AGATAAGAT
* * * * * * * * * * **
6937490 TCGCTATCTTCCATCTACTCCACTGCAACTTTAGGGATATAAGATTTGTGGCTTCAATCTGTTTT
1 TTG-TAGCTTCAATATGCTCTACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATCTGCTCC
* * * *
6937555 ACTGTAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTGCT-CTACTGCAACTTCAGAGAGATA
65 ACTGCAACTTCAGAGAAATAAGAGTTGTAGCTTCAATCTACTCCT-CTGCAACTTCAGAGAGATA
6937619 AGAT
129 AGAT
**
6937623 TTGTAGCTTCAATATGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATTTTCAATCTGCTCC
1 TTGTAGCTTCAATATGCTCTACTGCAACTTTAGAGAGATAAGATTTG-TAGCTTCAATCTGCTCC
* * * * *
6937688 ACTGCAACTTTAGGGAAATAAGAGTTGTGGCTTTAATCTACTCCTCTGCAACTTCAGGGAGATAA
65 ACTGCAACTTCAGAGAAATAAGAGTTGTAGCTTCAATCTACTCCTCTGCAACTTCAGAGAGATAA
6937753 GAT
130 GAT
6937756 TTG
1 TTG
6937759 CCACGATAAC
Statistics
Matches: 216, Mismatches: 46, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
132 39 0.18
133 107 0.50
134 5 0.02
135 2 0.01
138 3 0.01
139 2 0.01
140 58 0.27
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (132 bp):
TTGTAGCTTCAATATGCTCTACTGCAACTTTAGAGAGATAAGATTTGTAGCTTCAATCTGCTCCA
CTGCAACTTCAGAGAAATAAGAGTTGTAGCTTCAATCTACTCCTCTGCAACTTCAGAGAGATAAG
AT
Found at i:6937743 original size:177 final size:180
Alignment explanation
Indices: 6937325--6937758 Score: 491
Period size: 177 Copynumber: 2.4 Consensus size: 180
6937315 TCGTTCTAAC
* * * * *
6937325 CCACTGCGACTTTATGGATATAGGAATTGTTGCTTCAATCTGCTCCACTGCAACTTCAGAGAGAT
1 CCACTGCAACTTTAGGGATATAAGAATTGTGGCTTCAATCT-CTCCTCTGCAACTTCAGAGAGAT
* * * *
6937390 AAGATTAGTAGTTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAAATTTATAACTCGTAGCTT
65 AAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAAA-TTAT-A-TCGTAGCTT
* * * * *
6937455 TAATCTGTTCCCCTGCAACTCTAGGAAAATAAGATTCGCTATCTTCCATCTACT
127 CAATATGCTCCACTGCAACTCTAGGAAAATAAGATTCGCTATCTTCAATCTACT
* * ** *
6937509 CCACTGCAACTTTAGGGATATAAGATTTGTGGCTTCAATCTGTTTTACTGTAACTTCAGAGAGAT
1 CCACTGCAACTTTAGGGATATAAGAATTGTGGCTTCAATCTCTCCT-CTGCAACTTCAGAGAGAT
* *
6937574 AAGATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGA-T-T-T-GTAGCTTCAA
65 AAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAAATTATATCGTAGCTTCAA
* * * * * *
6937635 TATGCTCTACTGCAACTTTA-GAGAGATAAGATTTGCTATTTTCAATCTGCT
130 TATGCTCCACTGCAACTCTAGGA-AAATAAGATTCGCTATCTTCAATCTACT
* * * *
6937686 CCACTGCAACTTTAGGGAAATAAGAGTTGTGGCTTTAATCTACTCCTCTGCAACTTCAGGGAGAT
1 CCACTGCAACTTTAGGGATATAAGAATTGTGGCTTCAATCT-CTCCTCTGCAACTTCAGAGAGAT
6937751 AAGATTTG
65 AAGATTTG
6937759 CCACGATAAC
Statistics
Matches: 212, Mismatches: 35, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
176 2 0.01
177 109 0.51
178 3 0.01
181 1 0.00
182 1 0.00
183 1 0.00
184 95 0.45
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (180 bp):
CCACTGCAACTTTAGGGATATAAGAATTGTGGCTTCAATCTCTCCTCTGCAACTTCAGAGAGATA
AGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAAATTATATCGTAGCTTCAAT
ATGCTCCACTGCAACTCTAGGAAAATAAGATTCGCTATCTTCAATCTACT
Found at i:6937949 original size:51 final size:51
Alignment explanation
Indices: 6937712--6938040 Score: 293
Period size: 51 Copynumber: 6.6 Consensus size: 51
6937702 GAAATAAGAG
* ** * *
6937712 TTGTGGCTTTAATCTACTCCTCTGCAACTTCAGGGAGATAAGATTTGCCAC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTCAC
* * * * * * **
6937763 --GATAACTTCAATCCGTCCCACTGTAACTTCAGGG-GTATAGGATTTGTCGT
1 TTG-TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAG-ATAAGATTTGTCAC
* * * *
6937813 TTGTAGCTTTAATCTATTCCATTGCAACTTC-GAGGAAATAAGA--T-TCGC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAG-GGAGATAAGATTTGTCAC
* * * * *
6937861 ---TATCTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAAC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTCAC
6937909 TTGTAGCTTTAATCTGTTCCACTGCAACTTCA-GGAGGATAAGATTTGTCAC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGA-GATAAGATTTGTCAC
* * * *
6937960 TTGTAACTTTAATATGTTCCAGTGCAACTTCAGGGAGATAAGATTTGTAAC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTCAC
* *
6938011 TTGTAGCTTTAATTTGTTCCACTGTAACTT
1 TTGTAGCTTTAATCTGTTCCACTGCAACTT
6938041 TAATCTGTTC
Statistics
Matches: 218, Mismatches: 45, Indels: 30
0.74 0.15 0.10
Matches are distributed among these distances:
45 31 0.14
46 1 0.00
47 1 0.00
48 5 0.02
49 3 0.01
50 37 0.17
51 136 0.62
52 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (51 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTCAC
Found at i:6937970 original size:147 final size:146
Alignment explanation
Indices: 6937685--6938004 Score: 355
Period size: 147 Copynumber: 2.2 Consensus size: 146
6937675 TTCAATCTGC
* * ** * *
6937685 TCCACTGCAACTTTAGGGAAATAAGAGTT-G-TGGCTTTAATCTACTCCT-CTGCAACTTCAGGG
1 TCCAGTGCAACTTCAGGGAAATAAGA-TTCGCTATCTTCAATCTGCT-CTACTGCAACTTCAGGG
* * * *
6937747 AGATAAGATTTGCCACGATAACTTCAATCCGTCCCACTGTAACTTCAGGGGTATAGGATTTGTCG
64 AGATAAGATTTGCAACGATAACTTCAATCCGTCCCACTGCAACTTCAGGGGTATAAGATTTGTCA
* * *
6937812 TTTGTAGCTTTAATCTAT
129 CTTGTAACTTTAATATAT
*
6937830 TCCATTGCAACTTC-GAGGAAATAAGATTCGCTATCTTCAATCTGCTCTACTGCAACTTCAGGGA
1 TCCAGTGCAACTTCAG-GGAAATAAGATTCGCTATCTTCAATCTGCTCTACTGCAACTTCAGGGA
* * * * *
6937894 GATAAGATTTGTAACTTG-TAGCTTTAATCTGTTCCACTGCAACTTCAGGAGG-ATAAGATTTGT
65 GATAAGATTTGCAAC--GATAACTTCAATCCGTCCCACTGCAACTTCAGG-GGTATAAGATTTGT
*
6937957 CACTTGTAACTTTAATATGT
127 CACTTGTAACTTTAATATAT
*
6937977 TCCAGTGCAACTTCAGGGAGATAAGATT
1 TCCAGTGCAACTTCAGGGAAATAAGATT
6938005 TGTAACTTGT
Statistics
Matches: 146, Mismatches: 21, Indels: 14
0.81 0.12 0.08
Matches are distributed among these distances:
144 3 0.02
145 25 0.17
146 39 0.27
147 75 0.51
148 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (146 bp):
TCCAGTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCTACTGCAACTTCAGGGAG
ATAAGATTTGCAACGATAACTTCAATCCGTCCCACTGCAACTTCAGGGGTATAAGATTTGTCACT
TGTAACTTTAATATAT
Found at i:6938041 original size:21 final size:21
Alignment explanation
Indices: 6938012--6938061 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
6938002 ATTTGTAACT
* *
6938012 TGTAGCTTTAATTTGTTCCAC
1 TGTAACTTTAATCTGTTCCAC
6938033 TGTAACTTTAATCTGTTCCAC
1 TGTAACTTTAATCTGTTCCAC
*
6938054 TGCAACTT
1 TGTAACTT
6938062 CAAGGAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (21 bp):
TGTAACTTTAATCTGTTCCAC
Found at i:6938217 original size:102 final size:102
Alignment explanation
Indices: 6938033--6938224 Score: 296
Period size: 102 Copynumber: 1.9 Consensus size: 102
6938023 TTTGTTCCAC
* * *
6938033 TGTAACTTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTTGCATCTTCAATTTGCTCCAC
1 TGTAACTTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCAC
*
6938098 TACAACTTCAGGAAGATAAGATTTGAGATTTACATAT
66 TACAACTTAAGGAAGATAAGATTTGAGATTTACATAT
* * *
6938135 TGTAGCTTTAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTCGCATATTCAATCTGCTCCAC
1 TGTAACTTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCAC
*
6938200 TGCAACTCTAAGG-AGATAAGATTTG
66 TACAACT-TAAGGAAGATAAGATTTG
6938225 TGGCTTTAAT
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 77 0.95
103 4 0.05
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (102 bp):
TGTAACTTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCAC
TACAACTTAAGGAAGATAAGATTTGAGATTTACATAT
Found at i:6938267 original size:44 final size:43
Alignment explanation
Indices: 6938134--6938268 Score: 137
Period size: 44 Copynumber: 3.1 Consensus size: 43
6938124 GATTTACATA
* *
6938134 TTGTAGCTTTAATCTGTTCCAT-TGCAACTTCAGGGAAATAAGAT
1 TTGTAGCTTTAATCTGCTCC-TCTGCAACTTCA-GGAGATAAGAT
* * ** * * *
6938178 TCGCATATTCAATCTGCTCCACTGCAACTCTAAGGAGATAAGAT
1 TTGTAGCTTTAATCTGCTCCTCTGCAACT-TCAGGAGATAAGAT
*
6938222 TTGTGGCTTTAATCTGCTCCTCTGCAACTTCAGTGAGATAAGAT
1 TTGTAGCTTTAATCTGCTCCTCTGCAACTTCAG-GAGATAAGAT
6938266 TTG
1 TTG
6938269 CCATGATAAC
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
43 3 0.04
44 66 0.93
45 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (43 bp):
TTGTAGCTTTAATCTGCTCCTCTGCAACTTCAGGAGATAAGAT
Found at i:6944445 original size:28 final size:28
Alignment explanation
Indices: 6944414--6944467 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
6944404 CCCGAAGGTA
*
6944414 CATTTTACTAAATTGAGCTTTAGTTGTT
1 CATTTTACTAAATTGAACTTTAGTTGTT
* **
6944442 CATTTTGCTGGATTGAACTTTAGTTG
1 CATTTTACTAAATTGAACTTTAGTTG
6944468 AAAATTTCTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.22, C:0.11, G:0.19, T:0.48
Consensus pattern (28 bp):
CATTTTACTAAATTGAACTTTAGTTGTT
Found at i:6949814 original size:17 final size:17
Alignment explanation
Indices: 6949792--6949826 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
6949782 GGAGTGCTAC
6949792 AATAATAAT-ATAATCAT
1 AATAATAATCAT-ATCAT
6949809 AATAATAATCATATCAT
1 AATAATAATCATATCAT
6949826 A
1 A
6949827 GGAATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAATAATCATATCAT
Found at i:6950013 original size:3 final size:3
Alignment explanation
Indices: 6950007--6950051 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
6949997 TATATTGATG
*
6950007 ATA ATA A-A ATA ATA ATAA ATA A-A ATA ATA CTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
6950051 A
1 A
6950052 AGGCAAAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 4 0.11
3 30 0.81
4 3 0.08
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:6955217 original size:18 final size:18
Alignment explanation
Indices: 6955196--6955231 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
6955186 GGCCCTCAAC
*
6955196 TTGATAATTATTCTCACA
1 TTGACAATTATTCTCACA
6955214 TTGACAATTATTCTCACA
1 TTGACAATTATTCTCACA
6955232 CTAGGGCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.42
Consensus pattern (18 bp):
TTGACAATTATTCTCACA
Found at i:6957285 original size:3 final size:3
Alignment explanation
Indices: 6957279--6957303 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6957269 AGAATCTAAA
6957279 CCT CCT CCT CCT CCT CCT CCT CCT C
1 CCT CCT CCT CCT CCT CCT CCT CCT C
6957304 ATTATTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (3 bp):
CCT
Found at i:6960964 original size:12 final size:12
Alignment explanation
Indices: 6960947--6960980 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6960937 TTTAATAATT
6960947 AAAATAAATAAA
1 AAAATAAATAAA
*
6960959 AAAATAAATTAA
1 AAAATAAATAAA
*
6960971 AAACTAAATA
1 AAAATAAATA
6960981 TGAGTAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATAAATAAA
Found at i:6965224 original size:19 final size:20
Alignment explanation
Indices: 6965192--6965232 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
6965182 AATGCCTCTA
6965192 AAATAATAACAAAATTA-AC
1 AAATAATAACAAAATTATAC
6965211 AAATAA-AACAAAAATTATAC
1 AAATAATAAC-AAAATTATAC
6965231 AA
1 AA
6965233 TATCTAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 3 0.15
19 13 0.65
20 4 0.20
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (20 bp):
AAATAATAACAAAATTATAC
Found at i:6965264 original size:31 final size:29
Alignment explanation
Indices: 6965191--6965266 Score: 75
Period size: 31 Copynumber: 2.6 Consensus size: 29
6965181 AAATGCCTCT
*
6965191 AAAATAATAACAAAATTAACAAATAAAAC
1 AAAATAATAACAATATTAACAAATAAAAC
*
6965220 AAAA-ATTATACAATATCTAAGC-AATAACAAC
1 AAAATAATA-ACAATAT-TAA-CAAATAA-AAC
*
6965251 AAAATAGTAACAATAT
1 AAAATAATAACAATAT
6965267 AATAGTGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
28 3 0.08
29 10 0.26
30 8 0.21
31 15 0.38
32 3 0.08
ACGTcount: A:0.64, C:0.12, G:0.03, T:0.21
Consensus pattern (29 bp):
AAAATAATAACAATATTAACAAATAAAAC
Found at i:6967461 original size:71 final size:71
Alignment explanation
Indices: 6967329--6967473 Score: 173
Period size: 71 Copynumber: 2.0 Consensus size: 71
6967319 TATTCTTCTA
* * * * * * *
6967329 ATTTTGGTCACCTGCTAGTAATTTATTATTATTGCATACCCATTTCAGTCACTCAATTTTAATTA
1 ATTTTAGTCAACTGCTAGTAATTTAGTATTATTGCATACCCATTTCAATCACACAACTTTAATAA
6967394 ATTTTT
66 ATTTTT
* * * * * *
6967400 ATTTTAGTCAACTGCTAGTAATTTAGTGTTATTGTATGCTCATTTTAATCAGACAACTTTAATAA
1 ATTTTAGTCAACTGCTAGTAATTTAGTATTATTGCATACCCATTTCAATCACACAACTTTAATAA
6967465 ATTTTT
66 ATTTTT
6967471 ATT
1 ATT
6967474 CTGGTAATTT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.48
Consensus pattern (71 bp):
ATTTTAGTCAACTGCTAGTAATTTAGTATTATTGCATACCCATTTCAATCACACAACTTTAATAA
ATTTTT
Found at i:6977160 original size:3 final size:3
Alignment explanation
Indices: 6977147--6977203 Score: 50
Period size: 3 Copynumber: 20.0 Consensus size: 3
6977137 ACTATCGGTT
* **
6977147 TTA TT- TTA TTA TTA CTA TTA TTA TTA TTA TTTA ACA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
6977192 -TA TT- TT- TTA TTA
1 TTA TTA TTA TTA TTA
6977204 ATCCATGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 8 0.18
3 33 0.75
4 3 0.07
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:6981814 original size:24 final size:24
Alignment explanation
Indices: 6981782--6981828 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
6981772 TTCCATTACT
6981782 ATTATTATTA-CATTATTTACTATC
1 ATTATTATTATCA-TATTTACTATC
*
6981806 ATTATTATTATCATATTTTCTAT
1 ATTATTATTATCATATTTACTAT
6981829 ACATATACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTATTATTATCATATTTACTATC
Found at i:6981819 original size:12 final size:12
Alignment explanation
Indices: 6981782--6981819 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
6981772 TTCCATTACT
6981782 ATTATTATTA-C
1 ATTATTATTATC
*
6981793 ATTATTTACTATC
1 ATTA-TTATTATC
6981806 ATTATTATTATC
1 ATTATTATTATC
6981818 AT
1 AT
6981820 ATTTTCTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 4 0.17
12 14 0.61
13 5 0.22
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:6986523 original size:34 final size:34
Alignment explanation
Indices: 6986485--6986556 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 34
6986475 TATGTCATAA
*
6986485 TTTT-ATATACTTTTTAAAAATTTAAAATTTATAT
1 TTTTAATATAATTTTTAAAAATTTAAAATTT-TAT
* *
6986519 TTTTAATTTAATTTTTAAAATTTTAAAATTTTAT
1 TTTTAATATAATTTTTAAAAATTTAAAATTTTAT
6986553 TTTT
1 TTTT
6986557 TAAATTTCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 11 0.32
35 23 0.68
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (34 bp):
TTTTAATATAATTTTTAAAAATTTAAAATTTTAT
Found at i:6986554 original size:22 final size:22
Alignment explanation
Indices: 6986523--6986573 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
6986513 TTATATTTTT
*
6986523 AATTTAATTTTTAAAATTTTAA
1 AATTTAATTTTTAAAATTTCAA
* *
6986545 AATTTTATTTTTTAAATTTCAA
1 AATTTAATTTTTAAAATTTCAA
6986567 AATTTAA
1 AATTTAA
6986574 GTCATAACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
AATTTAATTTTTAAAATTTCAA
Found at i:6994968 original size:19 final size:19
Alignment explanation
Indices: 6994944--6994981 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
6994934 ATAGATAATC
*
6994944 AAATAATTAAATAATTACA
1 AAATAATCAAATAATTACA
6994963 AAATAATCAAATAATTACA
1 AAATAATCAAATAATTACA
6994982 CAAGGCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (19 bp):
AAATAATCAAATAATTACA
Found at i:7002691 original size:25 final size:25
Alignment explanation
Indices: 7002663--7002712 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
7002653 TTGTAGATGA
* *
7002663 TAGTTTGTTTTTTCTTCGGAACAAG
1 TAGTTTGCTTTTTCTTCAGAACAAG
7002688 TAGTTTGCTTTTTCTTCAGAACAAG
1 TAGTTTGCTTTTTCTTCAGAACAAG
7002713 GAAAAGAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.46
Consensus pattern (25 bp):
TAGTTTGCTTTTTCTTCAGAACAAG
Found at i:7006753 original size:4 final size:4
Alignment explanation
Indices: 7006744--7006785 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
7006734 CCTTAAAGAT
7006744 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
7006786 GAAAGACTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:7007388 original size:30 final size:29
Alignment explanation
Indices: 7007324--7007498 Score: 140
Period size: 30 Copynumber: 5.9 Consensus size: 29
7007314 GCAAAAAATA
* ** *
7007324 AAAATTACATTTTAACCCCTGTACTTTTT
1 AAAATTACATTTTGACCCCTAAACTTTCT
*
7007353 GAAATTTACATTTTGA-CCCTAAACTTTTCT
1 -AAAATTACATTTTGACCCCTAAAC-TTTCT
** *
7007383 AAAATTACATTTCAACCCTTAAACTTTCT
1 AAAATTACATTTTGACCCCTAAACTTTCT
* *
7007412 CAAAATTGCACTTTGACCCCTAAACTTTCT
1 -AAAATTACATTTTGACCCCTAAACTTTCT
* *
7007442 AAAAATTACATTTTGGCCCCT-TA-TTTCCT
1 -AAAATTACATTTTGACCCCTAAACTTT-CT
* * *
7007471 AAAATTTCATTTTTACCCCAAAAACTTT
1 AAAATTACATTTTGACCCC-TAAACTTT
7007499 ACACCCGTTA
Statistics
Matches: 114, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
28 19 0.17
29 26 0.23
30 66 0.58
31 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (29 bp):
AAAATTACATTTTGACCCCTAAACTTTCT
Found at i:7007389 original size:59 final size:60
Alignment explanation
Indices: 7007322--7007455 Score: 164
Period size: 59 Copynumber: 2.2 Consensus size: 60
7007312 ATGCAAAAAA
** * * * *
7007322 TAAAAATTACATTTTAACCCCTGTACTTTTTGAAATTTACATTTTGA-CCCTAAACTTTTC
1 TAAAAATTACATTTTAACCCCTAAACTTTCTCAAAATTACACTTTGACCCCTAAAC-TTTC
* * *
7007382 T-AAAATTACATTTCAACCCTTAAACTTTCTCAAAATTGCACTTTGACCCCTAAACTTTC
1 TAAAAATTACATTTTAACCCCTAAACTTTCTCAAAATTACACTTTGACCCCTAAACTTTC
7007441 TAAAAATTACATTTT
1 TAAAAATTACATTTT
7007456 GGCCCCTTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
59 41 0.66
60 21 0.34
ACGTcount: A:0.34, C:0.22, G:0.04, T:0.40
Consensus pattern (60 bp):
TAAAAATTACATTTTAACCCCTAAACTTTCTCAAAATTACACTTTGACCCCTAAACTTTC
Found at i:7008062 original size:14 final size:15
Alignment explanation
Indices: 7008038--7008067 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7008028 AGAGAAAGCG
7008038 AAAGGGAGAAGAGAA
1 AAAGGGAGAAGAGAA
7008053 AAAGGG-GAAGAGAA
1 AAAGGGAGAAGAGAA
7008067 A
1 A
7008068 TGAGGAGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (15 bp):
AAAGGGAGAAGAGAA
Found at i:7008419 original size:97 final size:98
Alignment explanation
Indices: 7008312--7008490 Score: 288
Period size: 97 Copynumber: 1.8 Consensus size: 98
7008302 TAGCCCCAGT
* * * * *
7008312 GCAGCAGGCCAGCCAGCAGGCCCAGATTCGGCGGCAGCCCGGCAGACCGAGTTCGCCCTACAGCT
1 GCAGCAGGCCAGCCAGCAGGCCCAGATTCGGCGGCAGCCCAGCAGACCCAGTCCGCCCAACAGCC
*
7008377 CAGCAGTGTAGC-GGCCCAGACCAGGGAAGCCC
66 CAGCAGTGCAGCAGGCCCAGACCAGGGAAGCCC
*
7008409 GCAGCAGGCCAGCCAGCAGGCCCAGATTCGGCGGCAGCCCAGCAGGCCCAGTCCGCCCAACAGCC
1 GCAGCAGGCCAGCCAGCAGGCCCAGATTCGGCGGCAGCCCAGCAGACCCAGTCCGCCCAACAGCC
7008474 CAGCAGTGCAGCAGGCC
66 CAGCAGTGCAGCAGGCC
7008491 AGTCAGCAGA
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
97 70 0.95
98 4 0.05
ACGTcount: A:0.22, C:0.39, G:0.32, T:0.07
Consensus pattern (98 bp):
GCAGCAGGCCAGCCAGCAGGCCCAGATTCGGCGGCAGCCCAGCAGACCCAGTCCGCCCAACAGCC
CAGCAGTGCAGCAGGCCCAGACCAGGGAAGCCC
Found at i:7009607 original size:41 final size:41
Alignment explanation
Indices: 7009550--7009674 Score: 130
Period size: 41 Copynumber: 3.0 Consensus size: 41
7009540 GATTCACTGA
* *
7009550 CACTTAGCCTGCTAGACTTAAAGCCTGATTC-TG-TACACCGG
1 CACTTAGCCTGCTAGACATAAAGTCTGA--CATGTTACACCGG
* *
7009591 CACTTAGCCTGCTAGACATATAGTCTGACATGTTTCACCGG
1 CACTTAGCCTGCTAGACATAAAGTCTGACATGTTACACCGG
* * * *
7009632 CA-TTAAGCCTGCTAGACGTAAAGTCTGAAATGTTTCACTGG
1 CACTT-AGCCTGCTAGACATAAAGTCTGACATGTTACACCGG
7009673 CA
1 CA
7009675 ATAAACCTGA
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 4 0.05
41 68 0.93
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (41 bp):
CACTTAGCCTGCTAGACATAAAGTCTGACATGTTACACCGG
Found at i:7011674 original size:17 final size:17
Alignment explanation
Indices: 7011619--7011681 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
7011609 ATAATAATCG
7011619 TGTTTCAAAAATTTTCA
1 TGTTTCAAAAATTTTCA
*
7011636 TGTTCTC-AAAATTTCTCG
1 TGTT-TCAAAAATTT-TCA
7011654 TGTTTCAAAAAATTTTC-
1 TGTTTC-AAAAATTTTCA
*
7011671 TGTTTTAAAAA
1 TGTTTCAAAAA
7011682 AAAATTCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 5 0.12
17 18 0.45
18 10 0.25
19 7 0.17
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (17 bp):
TGTTTCAAAAATTTTCA
Found at i:7011682 original size:17 final size:18
Alignment explanation
Indices: 7011625--7011718 Score: 59
Period size: 18 Copynumber: 5.3 Consensus size: 18
7011615 ATCGTGTTTC
*
7011625 AAAAATTTTCATGTTCT-
1 AAAAATTTTCATGTTTTA
* * *
7011642 CAAAATTTCTCGTGTTTCA
1 AAAAATTT-TCATGTTTTA
7011661 AAAAATTTTC-TGTTTTAA
1 AAAAATTTTCATGTTTT-A
** * *
7011679 AAAAAAATTCAT-ATTTC
1 AAAAATTTTCATGTTTTA
* *
7011696 AAAAATATTCGTGTTTTA
1 AAAAATTTTCATGTTTTA
7011714 AAAAA
1 AAAAA
7011719 ATAAAAATAA
Statistics
Matches: 58, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
17 22 0.38
18 28 0.48
19 8 0.14
ACGTcount: A:0.41, C:0.11, G:0.06, T:0.41
Consensus pattern (18 bp):
AAAAATTTTCATGTTTTA
Found at i:7011770 original size:18 final size:18
Alignment explanation
Indices: 7011744--7012037 Score: 254
Period size: 18 Copynumber: 16.6 Consensus size: 18
7011734 AAGAATCCAT
7011744 TTTTC-AAAATTCTCGTG
1 TTTTCAAAAATTCTCGTG
7011761 TTTTCAAAAATT-TCAGTG
1 TTTTCAAAAATTCTC-GTG
* *
7011779 TTTT-AAAAATTTTCATG
1 TTTTCAAAAATTCTCGTG
* *
7011796 TTTTCAAAATTTCTCATG
1 TTTTCAAAAATTCTCGTG
*
7011814 TTTT-AAAAATT-TCCGTA
1 TTTTCAAAAATTCT-CGTG
7011831 TTTTCAAAAATT-TCCGTG
1 TTTTCAAAAATTCT-CGTG
*
7011849 TTTT-AAAAAATCTTCGTG
1 TTTTCAAAAATTC-TCGTG
*
7011867 TTTTCAAAAATCCTCGTG
1 TTTTCAAAAATTCTCGTG
7011885 TTTTCAAAAATTC-CG-G
1 TTTTCAAAAATTCTCGTG
* *
7011901 TGTTTCACAAAATTTTCATG
1 T-TTTCA-AAAATTCTCGTG
*
7011921 TTTTCAAAAATTCCCGTG
1 TTTTCAAAAATTCTCGTG
7011939 TTTT-AAAAA-TCTCCGTG
1 TTTTCAAAAATTCT-CGTG
*
7011956 TTTTCAAAAATTTTCGTTG
1 TTTTCAAAAATTCTCG-TG
* * * *
7011975 TTTTTAAGAATTTTCATG
1 TTTTCAAAAATTCTCGTG
* *
7011993 -TCTCTAAAATTCTCGTG
1 TTTTCAAAAATTCTCGTG
*
7012010 TTTT-AAAAATTTTTCGTG
1 TTTTCAAAAA-TTCTCGTG
7012028 TTTTCAAAAA
1 TTTTCAAAAA
7012038 AAATAATTGT
Statistics
Matches: 227, Mismatches: 30, Indels: 38
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.02
17 73 0.32
18 112 0.49
19 35 0.15
20 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.46
Consensus pattern (18 bp):
TTTTCAAAAATTCTCGTG
Found at i:7011858 original size:36 final size:36
Alignment explanation
Indices: 7011744--7012037 Score: 245
Period size: 35 Copynumber: 8.3 Consensus size: 36
7011734 AAGAATCCAT
*
7011744 TTTTC-AAAA-TTCTCGTGTTTTCAAAAATTTCAGTG
1 TTTTCAAAAATTTC-CGTGTTTTCAAAAATTTCCGTG
* * *
7011779 TTTT-AAAAATTTTCATGTTTTC-AAAATTTCTCATG
1 TTTTCAAAAATTTCCGTGTTTTCAAAAATTTC-CGTG
*
7011814 TTTT-AAAAATTTCCGTATTTTCAAAAATTTCCGTG
1 TTTTCAAAAATTTCCGTGTTTTCAAAAATTTCCGTG
* *
7011849 TTTTAAAAAATCTT-CGTGTTTTCAAAAA-TCCTCGTG
1 TTTTCAAAAAT-TTCCGTGTTTTCAAAAATTTC-CGTG
* *
7011885 TTTTCAAAAA-TTCCG-GTGTTTCACAAAATTTTCATG
1 TTTTCAAAAATTTCCGTGT-TTTCA-AAAATTTCCGTG
* *
7011921 TTTTCAAAAATTCCCGTGTTTT-AAAAATCTCCGTG
1 TTTTCAAAAATTTCCGTGTTTTCAAAAATTTCCGTG
* * * * *
7011956 TTTTCAAAAATTTTCGTTGTTTTTAAGAATTTTCATG
1 TTTTCAAAAATTTCCG-TGTTTTCAAAAATTTCCGTG
* * *
7011993 -TCTCTAAAA-TTCTCGTGTTTT-AAAAATTTTTCGTG
1 TTTTCAAAAATTTC-CGTGTTTTCAAAAA-TTTCCGTG
7012028 TTTTCAAAAA
1 TTTTCAAAAA
7012038 AAATAATTGT
Statistics
Matches: 210, Mismatches: 31, Indels: 35
0.76 0.11 0.13
Matches are distributed among these distances:
34 16 0.08
35 91 0.43
36 82 0.39
37 19 0.09
38 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.46
Consensus pattern (36 bp):
TTTTCAAAAATTTCCGTGTTTTCAAAAATTTCCGTG
Found at i:7014478 original size:3 final size:3
Alignment explanation
Indices: 7014470--7014506 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7014460 GTTTTAAATG
7014470 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7014507 TGTTGAAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7020451 original size:9 final size:9
Alignment explanation
Indices: 7020437--7020623 Score: 109
Period size: 9 Copynumber: 20.9 Consensus size: 9
7020427 TAAGTATAAT
7020437 TAAGTTATG
1 TAAGTTATG
7020446 TAAGTTATG
1 TAAGTTATG
* *
7020455 ATATGATATATA
1 -TAAG-T-TATG
7020467 TAAGTTAT-
1 TAAGTTATG
7020475 TAAGTTATG
1 TAAGTTATG
*
7020484 TATG-TATG
1 TAAGTTATG
*
7020492 TGAGTTATG
1 TAAGTTATG
*
7020501 TAAGTTATCA
1 TAAGTTAT-G
* * **
7020511 TATGATAAA
1 TAAGTTATG
*
7020520 T-ATTTATG
1 TAAGTTATG
7020528 T-A-TTATG
1 TAAGTTATG
7020535 TAAGTTATG
1 TAAGTTATG
7020544 TAAGTTATG
1 TAAGTTATG
*
7020553 TGAGTTATG
1 TAAGTTATG
7020562 TGAA-TTATG
1 T-AAGTTATG
*
7020571 TAAGTTAGG
1 TAAGTTATG
*
7020580 TAAGTTTTG
1 TAAGTTATG
* * *
7020589 ATATGATATA
1 -TAAGTTATG
*
7020599 T-ATTTATG
1 TAAGTTATG
7020607 TAAGTTATG
1 TAAGTTATG
*
7020616 TAAATTAT
1 TAAGTTAT
7020624 ATATTAATTT
Statistics
Matches: 135, Mismatches: 31, Indels: 24
0.71 0.16 0.13
Matches are distributed among these distances:
7 6 0.04
8 25 0.19
9 82 0.61
10 15 0.11
11 4 0.03
12 3 0.02
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7020499 original size:55 final size:59
Alignment explanation
Indices: 7020439--7020570 Score: 166
Period size: 55 Copynumber: 2.3 Consensus size: 59
7020429 AGTATAATTA
*
7020439 AGTTATGTAAGTTATGATATGAT-ATATATAAG-TTAT-TAAGTTATGTATG-TATGTG
1 AGTTATGTAAGTTATGATATGATAATATATAAGATTATGTAAGTTATGTAAGTTATGTG
* * *
7020494 AGTTATGTAAGTTATCATATGATAAATATTTATGTATTATGTAAGTTATGTAAGTTATGTG
1 AGTTATGTAAGTTATGATATGAT-AATATATAAG-ATTATGTAAGTTATGTAAGTTATGTG
7020555 AGTTATGTGAA-TTATG
1 AGTTATGT-AAGTTATG
7020571 TAAGTTAGGT
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
55 22 0.34
57 7 0.11
59 4 0.06
60 12 0.18
61 18 0.28
62 2 0.03
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.45
Consensus pattern (59 bp):
AGTTATGTAAGTTATGATATGATAATATATAAGATTATGTAAGTTATGTAAGTTATGTG
Found at i:7020576 original size:36 final size:34
Alignment explanation
Indices: 7020437--7020629 Score: 125
Period size: 36 Copynumber: 5.7 Consensus size: 34
7020427 TAAGTATAAT
*
7020437 TAAGTTATGTAAGTTATG-A-TA--TG-ATATATA
1 TAAGTTATGTAAGTTATGTATTATGTGAAT-TATG
*
7020467 TAAGTTAT-TAAGTTATGTATGTATGTGAGTTATG
1 TAAGTTATGTAAGTTATGTAT-TATGTGAATTATG
* * * **
7020501 TAAGTTATCATATGATAAATATTTATGT--ATTATG
1 TAAGTTAT-GTAAGTTATGTA-TTATGTGAATTATG
7020535 TAAGTTATGTAAGTTATGTGAGTTATGTGAATTATG
1 TAAGTTATGTAAGTTATGT-A-TTATGTGAATTATG
* * * *
7020571 TAAGTTAGGTAAGTTTTGATATGATATAT-ATTTATG
1 TAAGTTATGTAAGTTATG-TAT--TATGTGAATTATG
* *
7020607 TAAGTTATGTAAATTATATATTA
1 TAAGTTATGTAAGTTATGTATTA
7020630 ATTTAAAATA
Statistics
Matches: 127, Mismatches: 21, Indels: 27
0.73 0.12 0.15
Matches are distributed among these distances:
29 9 0.07
30 9 0.07
32 2 0.02
33 8 0.06
34 33 0.26
35 5 0.04
36 55 0.43
37 6 0.05
ACGTcount: A:0.35, C:0.01, G:0.18, T:0.46
Consensus pattern (34 bp):
TAAGTTATGTAAGTTATGTATTATGTGAATTATG
Found at i:7021002 original size:28 final size:29
Alignment explanation
Indices: 7020971--7021102 Score: 81
Period size: 28 Copynumber: 4.3 Consensus size: 29
7020961 AATCAATTAA
*
7020971 TCAAATT-AATATAAAATCGACAATTTAT
1 TCAAATTAAATAAAAAATCGACAATTTAT
* *
7020999 TC-AATTAAATAAAAAATTGATAATTTAT
1 TCAAATTAAATAAAAAATCGACAATTTAT
* * *
7021027 TCACATAAAATCAAATAAACTAATCAAACATAATTTAT
1 T--C---AAATTAAATAAA-AAATC-GAC--AATTTAT
**
7021065 TC-AATTAAATCGAAAATCGACAATTTAT
1 TCAAATTAAATAAAAAATCGACAATTTAT
*
7021093 TCACATTAAA
1 TCAAATTAAA
7021103 CCGAATAAAC
Statistics
Matches: 78, Mismatches: 14, Indels: 23
0.68 0.12 0.20
Matches are distributed among these distances:
27 4 0.05
28 30 0.38
29 6 0.08
30 3 0.04
31 4 0.05
32 8 0.10
34 10 0.13
35 3 0.04
36 2 0.03
38 8 0.10
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.33
Consensus pattern (29 bp):
TCAAATTAAATAAAAAATCGACAATTTAT
Found at i:7021062 original size:38 final size:36
Alignment explanation
Indices: 7021018--7021208 Score: 146
Period size: 38 Copynumber: 5.6 Consensus size: 36
7021008 TAAAAAATTG
*
7021018 ATAATTTATTCACATAAAATCAAATAAACTAATCAAAC
1 ATAATTTATTCA-ATTAAATC-AATAAACTAATCAAAC
* *
7021056 ATAATTTATTCAATTAAATC---GAA--AATC-GAC
1 ATAATTTATTCAATTAAATCAATAAACTAATCAAAC
*
7021086 --AATTTATTCACATTAAACCGAATAAACTAATCAAAC
1 ATAATTTATTCA-ATTAAATC-AATAAACTAATCAAAC
* *
7021122 ATAATTTATTCAATTAAATC---GAA--AATC-GAC
1 ATAATTTATTCAATTAAATCAATAAACTAATCAAAC
*
7021152 --AATTTATTCACATTAAACCGAATAAACTAATCAAAC
1 ATAATTTATTCA-ATTAAATC-AATAAACTAATCAAAC
7021188 ATAATTTATTCAATT-AATCAA
1 ATAATTTATTCAATTAAATCAA
7021209 ATATATAAAG
Statistics
Matches: 120, Mismatches: 13, Indels: 43
0.68 0.07 0.24
Matches are distributed among these distances:
28 20 0.17
29 14 0.12
30 4 0.03
31 8 0.07
33 8 0.07
35 10 0.08
36 7 0.06
37 17 0.14
38 32 0.27
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.31
Consensus pattern (36 bp):
ATAATTTATTCAATTAAATCAATAAACTAATCAAAC
Found at i:7021066 original size:66 final size:66
Alignment explanation
Indices: 7020992--7021204 Score: 363
Period size: 66 Copynumber: 3.2 Consensus size: 66
7020982 TAAAATCGAC
** * * * * *
7020992 AATTTATTCAATTAAATAAAAAATTGATAATTTATTCACATAAAATCAAATAAACTAATCAAACA
1 AATTTATTCAATTAAATCGAAAATCGACAATTTATTCACATTAAACCGAATAAACTAATCAAACA
7021057 T
66 T
7021058 AATTTATTCAATTAAATCGAAAATCGACAATTTATTCACATTAAACCGAATAAACTAATCAAACA
1 AATTTATTCAATTAAATCGAAAATCGACAATTTATTCACATTAAACCGAATAAACTAATCAAACA
7021123 T
66 T
7021124 AATTTATTCAATTAAATCGAAAATCGACAATTTATTCACATTAAACCGAATAAACTAATCAAACA
1 AATTTATTCAATTAAATCGAAAATCGACAATTTATTCACATTAAACCGAATAAACTAATCAAACA
7021189 T
66 T
7021190 AATTTATTCAATTAA
1 AATTTATTCAATTAA
7021205 TCAAATATAT
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 140 1.00
ACGTcount: A:0.50, C:0.14, G:0.03, T:0.32
Consensus pattern (66 bp):
AATTTATTCAATTAAATCGAAAATCGACAATTTATTCACATTAAACCGAATAAACTAATCAAACA
T
Found at i:7021107 original size:29 final size:28
Alignment explanation
Indices: 7021058--7021173 Score: 106
Period size: 28 Copynumber: 3.8 Consensus size: 28
7021048 AATCAAACAT
*
7021058 AATTTATTCAATTAAATCGAAAATCGAC
1 AATTTATTCAATTAAACCGAAAATCGAC
*
7021086 AATTTATTCACATTAAACCGAATAAACTAATCAAAC
1 AATTTATTCA-ATTAAACCG----AA--AATC-GAC
*
7021122 ATAATTTATTCAATTAAATCGAAAATCGAC
1 --AATTTATTCAATTAAACCGAAAATCGAC
7021152 AATTTATTCACATTAAACCGAA
1 AATTTATTCA-ATTAAACCGAA
7021174 TAAACTAATC
Statistics
Matches: 72, Mismatches: 5, Indels: 21
0.73 0.05 0.21
Matches are distributed among these distances:
28 20 0.28
29 18 0.25
30 2 0.03
31 4 0.06
33 4 0.06
35 4 0.06
36 2 0.03
37 8 0.11
38 10 0.14
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.31
Consensus pattern (28 bp):
AATTTATTCAATTAAACCGAAAATCGAC
Found at i:7024069 original size:126 final size:124
Alignment explanation
Indices: 7023783--7024092 Score: 433
Period size: 124 Copynumber: 2.5 Consensus size: 124
7023773 TTAGAAAGTA
* * *
7023783 AATACATAGTTGCAGCGTTTTTGGTCTAAATGCCGCTATTGCTTACCTTTTGCAGCGTTTCAACC
1 AATACATAGTTGCGGCGTTTTTGGTCCAAATGCCGCTATTGCTTACCTTTTGCGGCGTTTCAACC
* *** ***
7023848 AAAAACGCCACTAAAAATTTAAATTTCTATATTGAAACGGTGCCGTTTTGAAAATTTTT
66 AAAAACGCCACTAAAAAATTAAATTTCTATAAAAAAACGGTGAAATTTTGAAAATTTTT
* * * *
7023907 AATACATATTTGCGGCGTTTTTGGTCCAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTCCAGC
1 AATACATAGTTGCGGCGTTTTTGGTCCAAATGCCGCTATTGCTTACCTTTTGCGGCGTTTCAACC
* *
7023972 AAAAACGCCACTAAAAAATTAAATTTTTGTACCAAAAAACGGTGAAATTTTGAAAATTTTT
66 AAAAACGCCACTAAAAAATTAAATTTCTATA--AAAAAACGGTGAAATTTTGAAAATTTTT
*
7024033 AATACATAGTTGCGGCGTTTTCT-GTCCAAATGCCGCTATTGCTTACCTTTTGTGGCGTTT
1 AATACATAGTTGCGGCGTTTT-TGGTCCAAATGCCGCTATTGCTTACCTTTTGCGGCGTTT
7024093 TTCTCATAAA
Statistics
Matches: 164, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
124 86 0.52
126 77 0.47
127 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (124 bp):
AATACATAGTTGCGGCGTTTTTGGTCCAAATGCCGCTATTGCTTACCTTTTGCGGCGTTTCAACC
AAAAACGCCACTAAAAAATTAAATTTCTATAAAAAAACGGTGAAATTTTGAAAATTTTT
Found at i:7024104 original size:126 final size:123
Alignment explanation
Indices: 7023783--7024111 Score: 408
Period size: 126 Copynumber: 2.6 Consensus size: 123
7023773 TTAGAAAGTA
* * * *
7023783 AATACATAGTTGCAGCGTTTTTGGTCTAAATGCCGCTATTGCTTACCTTTTGCAGCGTTTCAACC
1 AATACATAGTTGCGGCGTTTTTGGTCCAAATGCCGCTATTGCTTACCTTTTGCGGCGTTT-TACC
* *** ***
7023848 AAAAACGCCACTAAAAATTTAAATTTCTATATTGAAACGGTGCCGTTTTGAAAATTTTT
65 AAAAACGCCACTAAAAAATTAAATTTCTATAAAAAAACGGTGAAATTTTGAAAATTTTT
* * * *
7023907 AATACATATTTGCGGCGTTTTTGGTCCAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTCCAGC
1 AATACATAGTTGCGGCGTTTTTGGTCCAAATGCCGCTATTGCTTACCTTTTGCGGCGTTT-TACC
* *
7023972 AAAAACGCCACTAAAAAATTAAATTTTTGTACCAAAAAACGGTGAAATTTTGAAAATTTTT
65 AAAAACGCCACTAAAAAATTAAATTTCTATA--AAAAAACGGTGAAATTTTGAAAATTTTT
* *
7024033 AATACATAGTTGCGGCGTTTTCT-GTCCAAATGCCGCTATTGCTTACCTTTTGTGGCGTTTTTCT
1 AATACATAGTTGCGGCGTTTT-TGGTCCAAATGCCGCTATTGCTTACCTTTTGCGGCGTTTTAC-
* *
7024097 CATAAACGCCGCTAA
64 CAAAAACGCCACTAA
7024112 TGATTGACTT
Statistics
Matches: 177, Mismatches: 24, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
124 86 0.49
126 90 0.51
127 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (123 bp):
AATACATAGTTGCGGCGTTTTTGGTCCAAATGCCGCTATTGCTTACCTTTTGCGGCGTTTTACCA
AAAACGCCACTAAAAAATTAAATTTCTATAAAAAAACGGTGAAATTTTGAAAATTTTT
Found at i:7024541 original size:21 final size:22
Alignment explanation
Indices: 7024506--7024551 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
7024496 TGATTGGAAA
*
7024506 TTAAGATTTTAAAATTTAA-AT
1 TTAAGATTTTAAAATATAATAT
7024527 TTAA-ATTTTAGAAATATAATAT
1 TTAAGATTTTA-AAATATAATAT
7024549 TTA
1 TTA
7024552 TGATAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 6 0.27
21 11 0.50
22 5 0.23
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (22 bp):
TTAAGATTTTAAAATATAATAT
Found at i:7024606 original size:295 final size:296
Alignment explanation
Indices: 7024061--7024651 Score: 1080
Period size: 295 Copynumber: 2.0 Consensus size: 296
7024051 TTTCTGTCCA
*
7024061 AATGCCGCTATTGCTTACCTTTTGTGGCGTTTTTCTCATAAACGCCGCTAATGATTGACTTTTAC
1 AATGCCGCTATTGCTTACCTTTTGCGGCGTTTTTCTCATAAACGCCGCTAATGATTGACTTTTAC
7024126 TATAAACTATTAATATATGATATGATATAAGAATATCGTATTGAATAAATCAAAGAAGAGATTTC
66 TATAAACTATTAATATATGATATGATATAAGAATATCGTATTGAATAAATCAAAGAAGAGATTTC
7024191 CATTAAGTAGTGATTGGAAATTAAGAATTTAAAATTTAAATTTAAATTTTAGAAATATAATATTT
131 CATTAAGTAGTGATTGGAAATTAAGAATTTAAAATTTAAATTTAAATTTTAGAAATATAATATTT
*
7024256 ATGATAATTTTTTGATTCCATAGATTTACTGGAGACCTGTTTAATAATGAATTTGAAATCCTTAA
196 ATGATAATTTTTTGATTCCATAGATTTACTGGAGACCGGTTTAATAATGAATTTGAAATCCTTAA
*
7024321 AATATGTTTGAATTTCATAAATTCATGTGTTTATAC
261 AATATGTTTGAATTTCATAAATTCATGAGTTTATAC
* *
7024357 AATGTCGCTATTGC-TACCTTTTGCGGCGTTTTTCTCATAAACTG-TGCTAAT-ATTTGACTTTT
1 AATGCCGCTATTGCTTACCTTTTGCGGCGTTTTTCTCATAAAC-GCCGCTAATGA-TTGACTTTT
*
7024419 ACTATAAACTATTAATATATGATATGATATAAGAATATGGTATTGAATAAATCAAAGAAGAGATT
64 ACTATAAACTATTAATATATGATATGATATAAGAATATCGTATTGAATAAATCAAAGAAGAGATT
*
7024484 TCCATTAAGTAGTGATTGGAAATTAAGATTTTAAAATTTAAATTTAAATTTTAGAAATATAATAT
129 TCCATTAAGTAGTGATTGGAAATTAAGAATTTAAAATTTAAATTTAAATTTTAGAAATATAATAT
7024549 TTATGATAATTTTTTGATTCCATAGATTTACTGGAGACCGGTTTAATAATGAATTTGAAATCCTT
194 TTATGATAATTTTTTGATTCCATAGATTTACTGGAGACCGGTTTAATAATGAATTTGAAATCCTT
7024614 AAAATATGTTTGAATTTCATAAATTCATGAGTTTATAC
259 AAAATATGTTTGAATTTCATAAATTCATGAGTTTATAC
7024652 GCTATTGATA
Statistics
Matches: 286, Mismatches: 7, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
294 1 0.00
295 271 0.95
296 14 0.05
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (296 bp):
AATGCCGCTATTGCTTACCTTTTGCGGCGTTTTTCTCATAAACGCCGCTAATGATTGACTTTTAC
TATAAACTATTAATATATGATATGATATAAGAATATCGTATTGAATAAATCAAAGAAGAGATTTC
CATTAAGTAGTGATTGGAAATTAAGAATTTAAAATTTAAATTTAAATTTTAGAAATATAATATTT
ATGATAATTTTTTGATTCCATAGATTTACTGGAGACCGGTTTAATAATGAATTTGAAATCCTTAA
AATATGTTTGAATTTCATAAATTCATGAGTTTATAC
Found at i:7025151 original size:21 final size:21
Alignment explanation
Indices: 7025122--7025169 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
7025112 TAAACATGTA
7025122 AACCCTAAACCTTAAGCCCCT
1 AACCCTAAACCTTAAGCCCCT
*
7025143 AACCTTAAACCTTAAG-CCCT
1 AACCCTAAACCTTAAGCCCCT
*
7025163 AAACCTA
1 AACCCTA
7025170 TACCCTAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.38, C:0.38, G:0.04, T:0.21
Consensus pattern (21 bp):
AACCCTAAACCTTAAGCCCCT
Found at i:7025358 original size:21 final size:21
Alignment explanation
Indices: 7025309--7025358 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
7025299 ATCTTAAATA
***
7025309 CTAAACTCTAAACTTTAAACC
1 CTAAACTCTAAACCAAAAACC
* *
7025330 CCACACTCTAAACCAAAAACC
1 CTAAACTCTAAACCAAAAACC
7025351 CTAAACTC
1 CTAAACTC
7025359 CAAGCTATAA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (21 bp):
CTAAACTCTAAACCAAAAACC
Found at i:7025476 original size:14 final size:14
Alignment explanation
Indices: 7025436--7025476 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7025426 ACCTTCAATA
7025436 ATAAACCCTAAAACC
1 ATAAACCCT-AAACC
**
7025451 ATAAACATTAAACC
1 ATAAACCCTAAACC
7025465 ATAAACCCTAAA
1 ATAAACCCTAAA
7025477 AAACTCAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 15 0.68
15 7 0.32
ACGTcount: A:0.56, C:0.27, G:0.00, T:0.17
Consensus pattern (14 bp):
ATAAACCCTAAACC
Found at i:7026923 original size:43 final size:41
Alignment explanation
Indices: 7026876--7027103 Score: 206
Period size: 43 Copynumber: 5.3 Consensus size: 41
7026866 AAACGCCGCT
* * *
7026876 AAACGCCGCTAAAGCCTTGGACATTTAGCGGCGCTTTTCGCAG
1 AAACGCCGCTAAAGCCAT-GACCTTTAGCGGCGCTTTTC-CAA
*
7026919 AAACGCCGCTAAAGAGCAAT-ACCTTTAGCGGCGCTTTTCCCAA
1 AAACGCCGCT-AA-AGCCATGACCTTTAGCGGCGCTTTT-CCAA
* ** * *
7026962 AAACGCCGCTAAAGAACAAAACCTTTAGCGACGCTTTTCCTAC
1 AAACGCCGCTAAAG-CCATGACCTTTAGCGGCGCTTTTCC-AA
* *
7027005 AAACGCCGCTAAAGCTCATGACCTTTAGCGGCGCTTCTACTAA
1 AAACGCCGCTAAAGC-CATGACCTTTAGCGGCGCTT-TTCCAA
* * * *
7027048 AAACGCCGCTAAAGAACAAGACCTTTAGCGACGCTTTTCCTAC
1 AAACGCCGCTAAAG-CCATGACCTTTAGCGGCGCTTTTCC-AA
*
7027091 AAACGCCACTAAA
1 AAACGCCGCTAAA
7027104 AGCATAACTT
Statistics
Matches: 152, Mismatches: 23, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.01
42 7 0.05
43 134 0.88
44 5 0.03
45 4 0.03
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (41 bp):
AAACGCCGCTAAAGCCATGACCTTTAGCGGCGCTTTTCCAA
Found at i:7026997 original size:86 final size:87
Alignment explanation
Indices: 7026899--7027107 Score: 300
Period size: 86 Copynumber: 2.4 Consensus size: 87
7026889 GCCTTGGACA
* * * *
7026899 TTTAGCGGCGCTTTTCGC-AGAAACGCCGCTAAAGAGCAAT-ACCTTTAGCGGCGCTTTTCCCAA
1 TTTAGCGACGCTTTTC-CTACAAACGCCGCTAAAGAGCAATGACCTTTAGCGGCGCTTCTACCAA
7026962 AAACGCCGCTAAAGAACAAAACC
65 AAACGCCGCTAAAGAACAAAACC
** *
7026985 TTTAGCGACGCTTTTCCTACAAACGCCGCTAAAGCTC-ATGACCTTTAGCGGCGCTTCTACTAAA
1 TTTAGCGACGCTTTTCCTACAAACGCCGCTAAAGAGCAATGACCTTTAGCGGCGCTTCTACCAAA
*
7027049 AACGCCGCTAAAGAACAAGACC
66 AACGCCGCTAAAGAACAAAACC
*
7027071 TTTAGCGACGCTTTTCCTACAAACGCCACTAAA-AGCA
1 TTTAGCGACGCTTTTCCTACAAACGCCGCTAAAGAGCA
7027108 TAACTTTTAA
Statistics
Matches: 109, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
85 4 0.04
86 105 0.96
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.22
Consensus pattern (87 bp):
TTTAGCGACGCTTTTCCTACAAACGCCGCTAAAGAGCAATGACCTTTAGCGGCGCTTCTACCAAA
AACGCCGCTAAAGAACAAAACC
Found at i:7031729 original size:24 final size:23
Alignment explanation
Indices: 7031702--7031774 Score: 103
Period size: 23 Copynumber: 3.1 Consensus size: 23
7031692 CAAAACGACG
*
7031702 TTATTTTGCTCTACTAAAAATTTT
1 TTATTTTG-TCTATTAAAAATTTT
7031726 TTATTTTGTC-AGTTAAAAATTTT
1 TTATTTTGTCTA-TTAAAAATTTT
*
7031749 TTATTTTGTCTGTTAAAAATTTT
1 TTATTTTGTCTATTAAAAATTTT
7031772 TTA
1 TTA
7031775 GTCAACTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
22 1 0.02
23 36 0.80
24 8 0.18
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.58
Consensus pattern (23 bp):
TTATTTTGTCTATTAAAAATTTT
Found at i:7031748 original size:22 final size:23
Alignment explanation
Indices: 7031716--7031774 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
7031706 TTTGCTCTAC
7031716 TAAAAATTTTTTATTTTGTCAGT
1 TAAAAATTTTTTATTTTGTCAGT
*
7031739 TAAAAATTTTTTATTTTGTCTGT
1 TAAAAATTTTTTATTTTGTCAGT
7031762 TAAAAATTTTTTA
1 TAAAAATTTTTTA
7031775 GTCAACTAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (23 bp):
TAAAAATTTTTTATTTTGTCAGT
Found at i:7033053 original size:42 final size:41
Alignment explanation
Indices: 7032934--7033090 Score: 215
Period size: 41 Copynumber: 3.8 Consensus size: 41
7032924 NNNNNNNNNN
* * * *
7032934 ATTAGCGCCGCTTTTCCCAAAATGCCGCTAAAAGTCTGAGC
1 ATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGGTCTGAGC
* *
7032975 ATTAACGGCGCTTTTCCAGAAACGCCGCTAAAGGTCTGAGC
1 ATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGGTCTGAGC
* *
7033016 ATTAGCGGCGCTTCTCCAAAAAACGCCGCTAAGGGTCTGAGC
1 ATTAGCGGCGCTTTTCC-AAAAACGCCGCTAAAGGTCTGAGC
* *
7033058 ATTAGCGGCGCTTTTCCAAAAATGCCACTAAAG
1 ATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG
7033091 CCCCGAAAGG
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 63 0.62
42 38 0.38
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGGTCTGAGC
Found at i:7033072 original size:83 final size:82
Alignment explanation
Indices: 7032934--7033090 Score: 215
Period size: 83 Copynumber: 1.9 Consensus size: 82
7032924 NNNNNNNNNN
* * * *
7032934 ATTAGCGCCGCTTTTCCCAAAATGCCGCTAAAAGTCTGAGCATTAACGGCGCTTTTCCAGAAACG
1 ATTAGCGCCGCTTCTCCAAAAACGCCGCTAAAAGTCTGAGCATTAACGGCGCTTTTCCAAAAACG
*
7032999 CCGCTAAAGGTCTGAGC
66 CCACTAAAGGTCTGAGC
* ** * *
7033016 ATTAGCGGCGCTTCTCCAAAAAACGCCGCTAAGGGTCTGAGCATTAGCGGCGCTTTTCCAAAAAT
1 ATTAGCGCCGCTTCTCC-AAAAACGCCGCTAAAAGTCTGAGCATTAACGGCGCTTTTCCAAAAAC
7033081 GCCACTAAAG
65 GCCACTAAAG
7033091 CCCCGAAAGG
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
82 15 0.23
83 49 0.77
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (82 bp):
ATTAGCGCCGCTTCTCCAAAAACGCCGCTAAAAGTCTGAGCATTAACGGCGCTTTTCCAAAAACG
CCACTAAAGGTCTGAGC
Found at i:7033263 original size:40 final size:40
Alignment explanation
Indices: 7033128--7033263 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 40
7033118 TGGGCTTAGG
* * * *
7033128 TTTTTTGCGGCGTTTTTTGTAAAAACGCCGCTAATGC-TCA
1 TTTTTAGCGGCGTTTTCTGT-AAAGCGCCGCTAATGCTTGA
* *
7033168 TTTTTAGCGGCGCTTTCCTG-AAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCG-TTTTCTGTAAAGCGCCGCTAATGCTTGA
* *
7033208 TCTTTAGCGGCGTTTTGTGTAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTCTGTAAAGCGCCGCTAATGCTTGA
7033248 TTTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
7033264 TTGTCCAAAC
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 20 0.24
40 57 0.70
41 5 0.06
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTCTGTAAAGCGCCGCTAATGCTTGA
Found at i:7033355 original size:124 final size:124
Alignment explanation
Indices: 7033206--7033438 Score: 430
Period size: 124 Copynumber: 1.9 Consensus size: 124
7033196 GCTAATGCTC
* *
7033206 GATCTTTAGCGGCGTTTTGTGTAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTTTTGTCCA
1 GATCTTTAGCGGCGTTTTGTCTAAAGCGCCGCTAATGCTCGATTTTTAGCGGCGTTTTTTGTCCA
*
7033271 AACACCACTAAAAGTGCCGCTAAAAGCCTGTTTTGGTGTAGTGTAACTTATGCTCTTTA
66 AACACCACTAAAAATGCCGCTAAAAGCCTGTTTTGGTGTAGTGTAACTTATGCTCTTTA
7033330 GATCTTTAGCGGCGTTTTGTCTAAAGCGCCGCTAATGCTCGATTTTTAGCGGCGTTTTTTGTCCA
1 GATCTTTAGCGGCGTTTTGTCTAAAGCGCCGCTAATGCTCGATTTTTAGCGGCGTTTTTTGTCCA
*
7033395 AACGCCACTAAAAATGCCGCTAAAAGCCTGTTTTGGTGTAGTGT
66 AACACCACTAAAAATGCCGCTAAAAGCCTGTTTTGGTGTAGTGT
7033439 TGATATGATA
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
124 105 1.00
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.35
Consensus pattern (124 bp):
GATCTTTAGCGGCGTTTTGTCTAAAGCGCCGCTAATGCTCGATTTTTAGCGGCGTTTTTTGTCCA
AACACCACTAAAAATGCCGCTAAAAGCCTGTTTTGGTGTAGTGTAACTTATGCTCTTTA
Found at i:7036812 original size:41 final size:41
Alignment explanation
Indices: 7036755--7036881 Score: 191
Period size: 41 Copynumber: 3.1 Consensus size: 41
7036745 TAAAGTGCAG
** *
7036755 TCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAAT
1 TCAGGGGTACCAAAGTACAAACATGGGCACGTATGTGCAAT
*
7036796 TCAGGGGTATCAAAGTACAAACATGGGCACGTATGTGCAAT
1 TCAGGGGTACCAAAGTACAAACATGGGCACGTATGTGCAAT
* * *
7036837 TCAAGGGTACCGAAGTACAAACATGGGCACGTATGTACAAT
1 TCAGGGGTACCAAAGTACAAACATGGGCACGTATGTGCAAT
7036878 TCAG
1 TCAG
7036882 TAATCTTCGA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 77 1.00
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (41 bp):
TCAGGGGTACCAAAGTACAAACATGGGCACGTATGTGCAAT
Found at i:7036876 original size:20 final size:20
Alignment explanation
Indices: 7036810--7036876 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
7036800 GGGTATCAAA
7036810 GTACAAACATGGGCACGTAT
1 GTACAAACATGGGCACGTAT
* * * * *
7036830 GTGCAATTCAAGGGTACCG-AA
1 GTACAA-ACATGGGCA-CGTAT
7036851 GTACAAACATGGGCACGTAT
1 GTACAAACATGGGCACGTAT
7036871 GTACAA
1 GTACAA
7036877 TTCAGTAATC
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
19 2 0.06
20 18 0.53
21 12 0.35
22 2 0.06
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.19
Consensus pattern (20 bp):
GTACAAACATGGGCACGTAT
Found at i:7041549 original size:27 final size:28
Alignment explanation
Indices: 7041502--7041566 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 28
7041492 TGGATTTTGA
7041502 TTAGGATTTAGATGATAATATATTGGAT
1 TTAGGATTTAGATGATAATATATTGGAT
7041530 TTAGGATTT-GTATGAT-ATATATTGGAT
1 TTAGGATTTAG-ATGATAATATATTGGAT
*
7041557 TTGGGATTTA
1 TTAGGATTTA
7041567 TTATTATCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 20 0.59
28 14 0.41
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (28 bp):
TTAGGATTTAGATGATAATATATTGGAT
Found at i:7041670 original size:18 final size:19
Alignment explanation
Indices: 7041647--7041682 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7041637 TTTATACATT
*
7041647 AATTTTATAAA-TATTTTG
1 AATTTTAAAAATTATTTTG
7041665 AATTTTAAAAATTATTTT
1 AATTTTAAAAATTATTTT
7041683 CCAATTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
AATTTTAAAAATTATTTTG
Found at i:7042572 original size:55 final size:54
Alignment explanation
Indices: 7042448--7042572 Score: 142
Period size: 55 Copynumber: 2.3 Consensus size: 54
7042438 TGATAGCCTG
* * * * *
7042448 TGAATATTGCTTCTTTTGAATCGATTGTTTGTATGTTTAAATCAATTGTCATGT
1 TGAATACTGCTTCTTTTGAATCAATTGTTTATACGCTTAAATCAATTGTCATGT
* ** *
7042502 TGTAATACTACTTCTTTTGAATCAATTGTTTATACGCTTAAATTGATTGTTATGGT
1 TG-AATACTGCTTCTTTTGAATCAATTGTTTATACGCTTAAATCAATTGTCAT-GT
*
7042558 TGAATACTGTTTCTT
1 TGAATACTGCTTCTT
7042573 CTTCTTTTGA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
54 2 0.03
55 52 0.90
56 4 0.07
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (54 bp):
TGAATACTGCTTCTTTTGAATCAATTGTTTATACGCTTAAATCAATTGTCATGT
Found at i:7042649 original size:54 final size:55
Alignment explanation
Indices: 7042582--7042702 Score: 181
Period size: 55 Copynumber: 2.2 Consensus size: 55
7042572 TCTTCTTTTG
*
7042582 AATCGATTGTTATGTTAGAATATTGCTTC-TTTGAATAAATTATTTATATGTTTA
1 AATCGATTGTTATGTTAGAATACTGCTTCTTTTGAATAAATTATTTATATGTTTA
* * ** *
7042636 AATCAATTGTTATGTTGGAATACTGCTTCTTTTGAATCGATTGTTTATATGTTTA
1 AATCGATTGTTATGTTAGAATACTGCTTCTTTTGAATAAATTATTTATATGTTTA
7042691 AATCGATTGTTA
1 AATCGATTGTTA
7042703 CGCAGCACGT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
54 26 0.44
55 33 0.56
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (55 bp):
AATCGATTGTTATGTTAGAATACTGCTTCTTTTGAATAAATTATTTATATGTTTA
Found at i:7052023 original size:21 final size:21
Alignment explanation
Indices: 7051990--7052034 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7051980 GTGGCCCCAA
* *
7051990 ACATGGTCATGTGGCTACCCC
1 ACATGCTCATGTGACTACCCC
* *
7052011 ACATGCTCGTGTGACTACTCC
1 ACATGCTCATGTGACTACCCC
7052032 ACA
1 ACA
7052035 CGCATGTGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.24
Consensus pattern (21 bp):
ACATGCTCATGTGACTACCCC
Found at i:7052460 original size:41 final size:41
Alignment explanation
Indices: 7052403--7052492 Score: 119
Period size: 41 Copynumber: 2.2 Consensus size: 41
7052393 GTACAAGTTA
* *
7052403 CCTGATACGACACACCAACACGAAG-CTTGCTAGGCTCGAGG
1 CCTGATACAACACACCAACACGAAGAC-TGCTAGGCTCAAGG
* *
7052444 CCTGATACAATACACCAGCACGAAGACTGCTAGGCTCAAGG
1 CCTGATACAACACACCAACACGAAGACTGCTAGGCTCAAGG
*
7052485 CCCGATAC
1 CCTGATAC
7052493 GGTACATCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 42 0.98
42 1 0.02
ACGTcount: A:0.31, C:0.32, G:0.22, T:0.14
Consensus pattern (41 bp):
CCTGATACAACACACCAACACGAAGACTGCTAGGCTCAAGG
Found at i:7056244 original size:21 final size:18
Alignment explanation
Indices: 7056214--7056254 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 18
7056204 CATAAGTTTT
7056214 AAACAATTAATATAATATTA
1 AAACAATTAA-ATAA-ATTA
7056234 AAACTAATTAAATAAATTA
1 AAAC-AATTAAATAAATTA
7056253 AA
1 AA
7056255 TATGTGTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 8 0.40
21 6 0.30
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
AAACAATTAAATAAATTA
Found at i:7056951 original size:23 final size:24
Alignment explanation
Indices: 7056921--7056988 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 24
7056911 AAATTAAATC
7056921 TCTAAGATTATA-AAATCATATCT
1 TCTAAGATTATATAAATCATATCT
* *
7056944 TCTAAGATTGTATATATCATA---
1 TCTAAGATTATATAAATCATATCT
* *
7056965 TCTAAGATTACATATATCATATCT
1 TCTAAGATTATATAAATCATATCT
7056989 AAGATTGCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
21 19 0.51
23 11 0.30
24 7 0.19
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.41
Consensus pattern (24 bp):
TCTAAGATTATATAAATCATATCT
Found at i:7056970 original size:21 final size:21
Alignment explanation
Indices: 7056944--7057040 Score: 153
Period size: 21 Copynumber: 4.7 Consensus size: 21
7056934 AATCATATCT
*
7056944 TCTAAGATTGTATATATCATA
1 TCTAAGATTGCATATATCATA
*
7056965 TCTAAGATTACATATATCATA
1 TCTAAGATTGCATATATCATA
7056986 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
7057007 TCTAAGATTGCATATA--ATA
1 TCTAAGATTGCATATATCATA
*
7057026 TCTAAGATTGTATAT
1 TCTAAGATTGCATAT
7057041 CCTTGAAAAC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
19 17 0.24
21 55 0.76
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.40
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:7060627 original size:16 final size:18
Alignment explanation
Indices: 7060608--7060649 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
7060598 TTATGCTTTT
7060608 AATTATATATA-TTT-AA
1 AATTATATATATTTTCAA
*
7060624 AATTAT-TGTATTTTCAA
1 AATTATATATATTTTCAA
7060641 AATTATATA
1 AATTATATA
7060650 ACATTTACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 3 0.14
16 9 0.43
17 8 0.38
18 1 0.05
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
AATTATATATATTTTCAA
Found at i:7064406 original size:11 final size:11
Alignment explanation
Indices: 7064390--7064435 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
7064380 CTCAGCTATT
7064390 CTCTCAATTTC
1 CTCTCAATTTC
7064401 CTCTCAA-TTC
1 CTCTCAATTTC
*
7064411 TCTCTCAATTTG
1 -CTCTCAATTTC
7064423 CTCTCAATTTC
1 CTCTCAATTTC
7064434 CT
1 CT
7064436 TCCAAATTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 3 0.10
11 26 0.84
12 2 0.06
ACGTcount: A:0.17, C:0.35, G:0.02, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:7064417 original size:22 final size:22
Alignment explanation
Indices: 7064389--7064431 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7064379 TCTCAGCTAT
7064389 TCTCTCAATTTCCTCTCAATTC
1 TCTCTCAATTTCCTCTCAATTC
*
7064411 TCTCTCAATTTGCTCTCAATT
1 TCTCTCAATTTCCTCTCAATT
7064432 TCCTTCCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.33, G:0.02, T:0.47
Consensus pattern (22 bp):
TCTCTCAATTTCCTCTCAATTC
Found at i:7064470 original size:40 final size:40
Alignment explanation
Indices: 7064424--7064501 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 40
7064414 CTCAATTTGC
7064424 TCTCAATTTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* *
7064464 TCTCAATTTCCTCTCAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTT
7064502 TTAATTATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 34 0.97
41 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.00, T:0.45
Consensus pattern (40 bp):
TCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:7064493 original size:11 final size:12
Alignment explanation
Indices: 7064390--7064453 Score: 52
Period size: 11 Copynumber: 5.8 Consensus size: 12
7064380 CTCAGCTATT
7064390 CTCTC-AATTTC
1 CTCTCAAATTTC
7064401 CTCTC-AA-TTC
1 CTCTCAAATTTC
*
7064411 TCTCTC-AATTTG
1 -CTCTCAAATTTC
7064423 CTCTC-AATTTC
1 CTCTCAAATTTC
7064434 CT-TCCAAATTT-
1 CTCT-CAAATTTC
7064445 CTCTCAAAT
1 CTCTCAAAT
7064454 CCATATTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
10 4 0.09
11 34 0.74
12 8 0.17
ACGTcount: A:0.22, C:0.33, G:0.02, T:0.44
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:7065497 original size:7 final size:7
Alignment explanation
Indices: 7065485--7065509 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7065475 AGTCGATTAT
7065485 TATTTAG
1 TATTTAG
7065492 TATTTAG
1 TATTTAG
7065499 TATTTAG
1 TATTTAG
7065506 TATT
1 TATT
7065510 ATATATATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:7066178 original size:18 final size:18
Alignment explanation
Indices: 7066155--7066197 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7066145 TGCCAGGTGC
* *
7066155 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
7066173 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
7066191 GTTTCCT
1 GTATCCT
7066198 TTTCCGAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:7066884 original size:116 final size:117
Alignment explanation
Indices: 7066680--7066889 Score: 259
Period size: 116 Copynumber: 1.8 Consensus size: 117
7066670 CTAAAATAGA
* * *
7066680 AATTTACTTTTACACTTTTCATATAATAGAAATTCTTTTAAATAAGGTAATATGTTGAATATTTC
1 AATTTACTTTAACACTTTTAATAAAATAGAAATTCTTTTAAATAAGGTAATATGTTGAATATTTC
* *
7066745 TATATTATTTCATTTAATAAAATA-AAATGTTGTTTTGAATAAAGTAATTGT
66 TACAATATTTCATTTAATAAAATATAAATGTTGTTTTGAATAAAGTAATTGT
* * **
7066796 AATTTACTTTAATATTTTTAATAAAATAGATTTTCTTTTAAATAA-GTCAATAT-TCTGAATATT
1 AATTTACTTTAACACTTTTAATAAAATAGAAATTCTTTTAAATAAGGT-AATATGT-TGAATATT
*
7066859 TGTACCAAT-TTTCGATTTAA-AAAATATAAAT
64 TCTA-CAATATTTC-ATTTAATAAAATATAAAT
7066890 AATACAAAGT
Statistics
Matches: 79, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
115 3 0.04
116 64 0.81
117 12 0.15
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.46
Consensus pattern (117 bp):
AATTTACTTTAACACTTTTAATAAAATAGAAATTCTTTTAAATAAGGTAATATGTTGAATATTTC
TACAATATTTCATTTAATAAAATATAAATGTTGTTTTGAATAAAGTAATTGT
Found at i:7067686 original size:14 final size:15
Alignment explanation
Indices: 7067653--7067690 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
7067643 TTTAATTTTT
*
7067653 AACCCTAATCTCTAA
1 AACCCTAAACTCTAA
7067668 AACCCTAAACTCT-A
1 AACCCTAAACTCTAA
7067682 AACCCTAAA
1 AACCCTAAA
7067691 AGTAATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCTAAACTCTAA
Found at i:7073037 original size:112 final size:113
Alignment explanation
Indices: 7072830--7073054 Score: 443
Period size: 112 Copynumber: 2.0 Consensus size: 113
7072820 TTTACATCAT
7072830 TAATCATCCAAAAATGCATTAAGAATAAGATTAAAATATGTTATTTTTACAGCTTATCAAATATC
1 TAATCATCCAAAAATGCATTAAGAATAAGATTAAAATATGTTATTTTTACAGCTTATCAAATATC
7072895 CCCACACTTAAGCGTTTATTTGTCCTTAAGCAAAATCTTCAACTCACA
66 CCCACACTTAAGCGTTTATTTGTCCTTAAGCAAAATCTTCAACTCACA
7072943 TAATCATCC-AAAATGCATTAAGAATAAGATTAAAATATGTTATTTTTACAGCTTATCAAATATC
1 TAATCATCCAAAAATGCATTAAGAATAAGATTAAAATATGTTATTTTTACAGCTTATCAAATATC
7073007 CCCACACTTAAGCGTTTATTTGTCCTTAAGCAAAATCTTCAACTCACA
66 CCCACACTTAAGCGTTTATTTGTCCTTAAGCAAAATCTTCAACTCACA
7073055 ATTAAAATTA
Statistics
Matches: 112, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
112 103 0.92
113 9 0.08
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.34
Consensus pattern (113 bp):
TAATCATCCAAAAATGCATTAAGAATAAGATTAAAATATGTTATTTTTACAGCTTATCAAATATC
CCCACACTTAAGCGTTTATTTGTCCTTAAGCAAAATCTTCAACTCACA
Found at i:7080116 original size:17 final size:17
Alignment explanation
Indices: 7080096--7080142 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
7080086 GTGCAAAAAC
7080096 AAAAGAAGAAGAAAAGA
1 AAAAGAAGAAGAAAAGA
* *
7080113 AAAAAAATGTA-AAAAGA
1 AAAAGAA-GAAGAAAAGA
*
7080130 AAAAGGAGAAGAA
1 AAAAGAAGAAGAA
7080143 GAAGGAAACT
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
16 2 0.09
17 19 0.83
18 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.04
Consensus pattern (17 bp):
AAAAGAAGAAGAAAAGA
Found at i:7083808 original size:25 final size:25
Alignment explanation
Indices: 7083780--7083833 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
7083770 CTTGTGATCA
7083780 TTTTTGAACCAA-TATTCTTTCAATC
1 TTTTTGAA-CAATTATTCTTTCAATC
* *
7083805 TTTTTGAATAATTATTCTTTCATTC
1 TTTTTGAACAATTATTCTTTCAATC
7083830 TTTT
1 TTTT
7083834 GGATTTCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.57
Consensus pattern (25 bp):
TTTTTGAACAATTATTCTTTCAATC
Found at i:7084648 original size:7 final size:7
Alignment explanation
Indices: 7084616--7084640 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7084606 AATCAAAATC
7084616 AAAATAA
1 AAAATAA
7084623 AAAATAA
1 AAAATAA
7084630 AAAATAA
1 AAAATAA
7084637 AAAA
1 AAAA
7084641 AGAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:7085556 original size:7 final size:7
Alignment explanation
Indices: 7085544--7085587 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
7085534 CGAAAAAATG
7085544 TGAAAAA
1 TGAAAAA
7085551 TGAAAAAA
1 TG-AAAAA
7085559 TG-AAAA
1 TGAAAAA
7085565 TGAAAAA
1 TGAAAAA
7085572 TGAAAAA
1 TGAAAAA
7085579 -GTAAAAA
1 TG-AAAAA
7085586 TG
1 TG
7085588 GAGAGGCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
6 7 0.21
7 18 0.55
8 8 0.24
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:7085570 original size:21 final size:21
Alignment explanation
Indices: 7085544--7085587 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7085534 CGAAAAAATG
*
7085544 TGAAAAATGAAAAAATGAAAA
1 TGAAAAATGAAAAAATAAAAA
*
7085565 TGAAAAATGAAAAAGTAAAAA
1 TGAAAAATGAAAAAATAAAAA
7085586 TG
1 TG
7085588 GAGAGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (21 bp):
TGAAAAATGAAAAAATAAAAA
Found at i:7086978 original size:44 final size:44
Alignment explanation
Indices: 7086928--7087066 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
7086918 AATAGCAGAT
*
7086928 CTTGCCTTCCTGCATCGACAGTGAAGCAGATTAAAGACAGCAGC
1 CTTGCCTTCCTGCATCGATAGTGAAGCAGATTAAAGACAGCAGC
* * * ** *
7086972 CTTGCC-TCTCT-CAGTTG-TAGTTAAGCAGGTTGAAA-TTAGCAGAT
1 CTTGCCTTC-CTGCA-TCGATAGTGAAGCAGATT-AAAGACAGCAG-C
* * * *
7087016 CTTGCCTTCCTGCACCGATAGCGAAGCAGATTGAAGACACCAGC
1 CTTGCCTTCCTGCATCGATAGTGAAGCAGATTAAAGACAGCAGC
7087060 CTTGCCT
1 CTTGCCT
7087067 CCCTTGGTTG
Statistics
Matches: 70, Mismatches: 17, Indels: 16
0.68 0.17 0.16
Matches are distributed among these distances:
43 20 0.29
44 31 0.44
45 19 0.27
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (44 bp):
CTTGCCTTCCTGCATCGATAGTGAAGCAGATTAAAGACAGCAGC
Found at i:7087053 original size:88 final size:88
Alignment explanation
Indices: 7086823--7087405 Score: 637
Period size: 88 Copynumber: 6.6 Consensus size: 88
7086813 AACAGATCAC
* * *
7086823 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATTGAAGACACCAGCCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
7086888 CCCTGGGTTGCAGCGGAGTAGGT
66 CCCTGGGTTGCAGTGGAGCAGGT
* * * ** *
7086911 TAAAAAAAATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATTAAAGACAGCAGCCTTG
1 T---GAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTG
* ** * **
7086976 CCTCTCTCAGTTGTAGTTAAGCAGGT
63 CCTCCCTGGGTTGCAGTGGAGCAGGT
* * *
7087002 TGAAATTAGCAGATCTTGCCTTCCTGCACCGATAGCGAAGCAGATTGAAGACACCAGCCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
7087067 CCCTTGGTTGCAGCT-GAGTAGGT
66 CCCTGGGTTGCAG-TGGAGCAGGT
* * * * * * *
7087090 TAAAAATAGCATATCTTGCCTTCTTGTACCGACAGTGAAGCAAATCAAAGACACCAGCCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
7087155 CCCTCGGTTGCAGTGGAGCAGGT
66 CCCTGGGTTGCAGTGGAGCAGGT
* * * * * * * **
7087178 TGAAGATAGCAGATCTTGTCTTTCTGCATCGACAGCAAAGCAGATCGAAGATACCAGACTTAACT
1 TGAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
7087243 CCCTGGGTTGCAATGGAGCAGGT
66 CCCTGGGTTGCAGTGGAGCAGGT
* * ** * * *
7087266 TGAAGATAGCAGATCTTGCATTCCTGTGCTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
7087331 CCCTGGGTTGCAGCGGAACAGGT
66 CCCTGGGTTGCAGTGGAGCAGGT
* * * * *
7087354 TGAAAATAGAAAATATTGCCTTCCTGCACTGACAGCGAAACAGATCGAAGAC
1 TGAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGAC
7087406 CCCAATCCTA
Statistics
Matches: 406, Mismatches: 84, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
87 1 0.00
88 331 0.82
89 1 0.00
91 73 0.18
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (88 bp):
TGAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTGGGTTGCAGTGGAGCAGGT
Found at i:7089279 original size:3 final size:3
Alignment explanation
Indices: 7089273--7089329 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
7089263 TTTATAATAC
* * * * *
7089273 TAT TAT TAT TAT TAT CAT TAT TGT TAT TAT TAC TAC TAT TAA TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7089320 GTAT TAT TAT
1 -TAT TAT TAT
7089330 CGTATTAGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
2 2 0.04
3 40 0.89
4 3 0.07
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7089391 original size:20 final size:20
Alignment explanation
Indices: 7089368--7089442 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
7089358 TTTATTTTAC
7089368 ATTATTTTATTTTATTATGT
1 ATTATTTTATTTTATTATGT
*
7089388 ATTATTTTGTAATGCTTTTATCATGT
1 ATTA-TTT-T-A---TTTTATTATGT
* *
7089414 ATTATTCTATTTTATTATGC
1 ATTATTTTATTTTATTATGT
7089434 ATTATTTTA
1 ATTATTTTA
7089443 AATATTCTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
20 21 0.48
21 3 0.07
22 1 0.02
23 2 0.05
24 1 0.02
25 2 0.05
26 14 0.32
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.63
Consensus pattern (20 bp):
ATTATTTTATTTTATTATGT
Found at i:7091859 original size:3 final size:3
Alignment explanation
Indices: 7091853--7091909 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
7091843 TTTATAATAC
* * * * *
7091853 TAT TAT TAT TAT TAT CAT TAT TGT TAT TAT TAC TAC TAT TAA TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7091900 GTAT TAT TAT
1 -TAT TAT TAT
7091910 CGTATTAGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
2 2 0.04
3 40 0.89
4 3 0.07
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7091971 original size:20 final size:20
Alignment explanation
Indices: 7091948--7092022 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
7091938 TTTATTTTAC
7091948 ATTATTTTATTTTATTATGT
1 ATTATTTTATTTTATTATGT
*
7091968 ATTATTTTGTAATGCTTTTATCATGT
1 ATTA-TTT-T-A---TTTTATTATGT
* *
7091994 ATTATTCTATTTTATTATGC
1 ATTATTTTATTTTATTATGT
7092014 ATTATTTTA
1 ATTATTTTA
7092023 AATATTCTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
20 21 0.48
21 3 0.07
22 1 0.02
23 2 0.05
24 1 0.02
25 2 0.05
26 14 0.32
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.63
Consensus pattern (20 bp):
ATTATTTTATTTTATTATGT
Found at i:7096495 original size:2 final size:2
Alignment explanation
Indices: 7096488--7096514 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7096478 AATTTTAGTC
7096488 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7096515 TGATTGAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7111348 original size:18 final size:18
Alignment explanation
Indices: 7111322--7111356 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7111312 ATGATGTGTC
*
7111322 AAACTATTTTCATGCTTG
1 AAACCATTTTCATGCTTG
*
7111340 AAACCATTTTGATGCTT
1 AAACCATTTTCATGCTT
7111357 ACCATTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (18 bp):
AAACCATTTTCATGCTTG
Found at i:7117748 original size:62 final size:62
Alignment explanation
Indices: 7117651--7117840 Score: 380
Period size: 62 Copynumber: 3.1 Consensus size: 62
7117641 CGGAGAAAAC
7117651 TACTCGATCGAAGCGCTCATCCTAGACAAATCAAAAAGATACAATTTTGATTAAGTGTTTAT
1 TACTCGATCGAAGCGCTCATCCTAGACAAATCAAAAAGATACAATTTTGATTAAGTGTTTAT
7117713 TACTCGATCGAAGCGCTCATCCTAGACAAATCAAAAAGATACAATTTTGATTAAGTGTTTAT
1 TACTCGATCGAAGCGCTCATCCTAGACAAATCAAAAAGATACAATTTTGATTAAGTGTTTAT
7117775 TACTCGATCGAAGCGCTCATCCTAGACAAATCAAAAAGATACAATTTTGATTAAGTGTTTAT
1 TACTCGATCGAAGCGCTCATCCTAGACAAATCAAAAAGATACAATTTTGATTAAGTGTTTAT
7117837 TACT
1 TACT
7117841 TTAGATATTA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 128 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (62 bp):
TACTCGATCGAAGCGCTCATCCTAGACAAATCAAAAAGATACAATTTTGATTAAGTGTTTAT
Found at i:7121822 original size:32 final size:32
Alignment explanation
Indices: 7121760--7121897 Score: 188
Period size: 32 Copynumber: 4.3 Consensus size: 32
7121750 NNNNNNNCAA
* *
7121760 AAAGCCATAAGT-ACAGTAATATGATTGGCAC
1 AAAGCCATCAGTAACAGTAATATGATCGGCAC
* *
7121791 AAAGCCATCAGTAGCAGTGATATGATCGGCAC
1 AAAGCCATCAGTAACAGTAATATGATCGGCAC
* * *
7121823 ACAGCCATCAGTAACGGTAATATGATCAGCAC
1 AAAGCCATCAGTAACAGTAATATGATCGGCAC
**
7121855 AAAGCCATCAGTAATGGTAATATGATCGGCAC
1 AAAGCCATCAGTAACAGTAATATGATCGGCAC
7121887 AAAGCCATCAG
1 AAAGCCATCAG
7121898 CAGCATTGCA
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 11 0.12
32 83 0.88
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (32 bp):
AAAGCCATCAGTAACAGTAATATGATCGGCAC
Found at i:7121934 original size:26 final size:26
Alignment explanation
Indices: 7121905--7121955 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
7121895 CAGCAGCATT
7121905 GCAGCAAAGCTGCCAGCAATAGTATC
1 GCAGCAAAGCTGCCAGCAATAGTATC
* *
7121931 GCAGCAAAGCTGCCCGTAATAGTAT
1 GCAGCAAAGCTGCCAGCAATAGTAT
7121956 ATGTGGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGCAATAGTATC
Found at i:7122103 original size:24 final size:24
Alignment explanation
Indices: 7122071--7122175 Score: 97
Period size: 24 Copynumber: 4.4 Consensus size: 24
7122061 TCATGCCCCG
*
7122071 AATCGGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* *
7122095 AATCAGTCATACCAATCA-ATAACA
1 AATCAGTCATACAAATCACA-GACA
**
7122119 AATCAGTCATTTAAATCACAGAC-
1 AATCAGTCATACAAATCACAGACA
** * *
7122142 AATCAGTCATTTACATCACGGACA
1 AATCAGTCATACAAATCACAGACA
*
7122166 AATCAATCAT
1 AATCAGTCAT
7122176 TTACACTCGA
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
23 22 0.32
24 45 0.66
25 1 0.01
ACGTcount: A:0.45, C:0.24, G:0.09, T:0.23
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:7122149 original size:23 final size:24
Alignment explanation
Indices: 7122083--7122178 Score: 106
Period size: 24 Copynumber: 4.0 Consensus size: 24
7122073 TCGGTCATAC
**
7122083 AAATCACAGACAAATCAGTCATAC
1 AAATCACAGACAAATCAGTCATTT
* *
7122107 CAATCA-ATAACAAATCAGTCATTT
1 AAATCACA-GACAAATCAGTCATTT
7122131 AAATCACAGAC-AATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
* * *
7122154 ACATCACGGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
7122178 A
1 A
7122179 CACTCGATGG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
23 22 0.37
24 37 0.62
25 1 0.02
ACGTcount: A:0.46, C:0.23, G:0.07, T:0.24
Consensus pattern (24 bp):
AAATCACAGACAAATCAGTCATTT
Found at i:7122241 original size:27 final size:27
Alignment explanation
Indices: 7122196--7122275 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
7122186 TGGGCAAAAT
7122196 AGTCATTT-ACCCT-CTAGGGGTATTAC
1 AGTCATTTAACCCTAC-AGGGGTATTAC
* * *
7122222 AGTCATTTTACCTTACAGGGGTATTTC
1 AGTCATTTAACCCTACAGGGGTATTAC
* *
7122249 AGTCATTTAACCCTATAAGGGTATTAC
1 AGTCATTTAACCCTACAGGGGTATTAC
7122276 GGTTTACCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 8 0.18
27 36 0.80
28 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
AGTCATTTAACCCTACAGGGGTATTAC
Found at i:7122285 original size:23 final size:23
Alignment explanation
Indices: 7122258--7122302 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7122248 CAGTCATTTA
*
7122258 ACCCTATAAGG-GTATTACGGTTT
1 ACCCTAT-AGGTGCATTACGGTTT
7122281 ACCCTATAGGTGCATTACGGTT
1 ACCCTATAGGTGCATTACGGTT
7122303 ATTTTATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (23 bp):
ACCCTATAGGTGCATTACGGTTT
Found at i:7122347 original size:27 final size:27
Alignment explanation
Indices: 7122317--7122458 Score: 155
Period size: 27 Copynumber: 5.3 Consensus size: 27
7122307 TATCCTATAG
7122317 GGGT-TTTCCGATCATTTTACCCTTCGA
1 GGGTATTT-CGATCATTTTACCCTTCGA
* *
7122344 GGGTATTTCGGTCATTTTACCATTCGA
1 GGGTATTTCGATCATTTTACCCTTCGA
*
7122371 GGGTATTTCAATCATTTTACCCTTCGA
1 GGGTATTTCGATCATTTTACCCTTCGA
** * *
7122398 GATTATTTCGATAATTTTACCTTTC-A
1 GGGTATTTCGATCATTTTACCCTTCGA
* * *
7122424 AGGTATTTCGGTAATTTTA-CCTATCGA
1 GGGTATTTCGATCATTTTACCCT-TCGA
7122451 GGGTATTT
1 GGGTATTT
7122459 TGGTAATTTA
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
25 2 0.02
26 18 0.19
27 73 0.76
28 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGATCATTTTACCCTTCGA
Found at i:7128147 original size:5 final size:5
Alignment explanation
Indices: 7128137--7128196 Score: 120
Period size: 5 Copynumber: 12.0 Consensus size: 5
7128127 TTAGAATTAG
7128137 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
7128187 TTTTC TTTTC
1 TTTTC TTTTC
7128197 GGGTTCTTGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 55 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:7130673 original size:19 final size:20
Alignment explanation
Indices: 7130649--7130689 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
7130639 AAATTTAGGC
* *
7130649 AAATATTGACTAA-AAATTG
1 AAATATTCAATAAGAAATTG
7130668 AAATATTCAATAAGAAATTG
1 AAATATTCAATAAGAAATTG
7130688 AA
1 AA
7130690 TTGTGTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.29
Consensus pattern (20 bp):
AAATATTCAATAAGAAATTG
Found at i:7131263 original size:40 final size:40
Alignment explanation
Indices: 7131140--7131278 Score: 115
Period size: 40 Copynumber: 3.5 Consensus size: 40
7131130 ACTTCGAGTC
* *
7131140 GATGAGACACTAGGTGTCAAATTACTACTTCGGATTAAT-T
1 GATGAGACACTGGGTGTCAAATTATTACTTCGGATT-ATCT
* * * * * *
7131180 CGATGAGGCACAGGGTG-CCAA-T-TTACTTCGGTTTAGCC
1 -GATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCT
* *
7131218 AATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
1 GATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCT
* * *
7131258 GATGAGGCACTGAGTGCCAAA
1 GATGAGACACTGGGTGTCAAA
7131279 CTGGTGTGTT
Statistics
Matches: 74, Mismatches: 20, Indels: 9
0.72 0.19 0.09
Matches are distributed among these distances:
37 14 0.19
38 13 0.18
39 2 0.03
40 32 0.43
41 13 0.18
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCT
Found at i:7139753 original size:40 final size:40
Alignment explanation
Indices: 7139695--7139771 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
7139685 GGGTGCCAAT
* * *
7139695 TTACTTTGATTTAGCCGATGAGACACTGAATGTCAAATTA
1 TTACTTCGAATTAGCCGATGAGACACTGAATGCCAAATTA
* * *
7139735 TTACTTCGAATTATCCGATGAGGCACTGGATGCCAAA
1 TTACTTCGAATTAGCCGATGAGACACTGAATGCCAAA
7139772 CTTGTGTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31
Consensus pattern (40 bp):
TTACTTCGAATTAGCCGATGAGACACTGAATGCCAAATTA
Found at i:7150430 original size:28 final size:25
Alignment explanation
Indices: 7150398--7150449 Score: 68
Period size: 28 Copynumber: 2.0 Consensus size: 25
7150388 AATTCTATTT
7150398 AATTCAAATTTAATGTAAATTATAAATG
1 AATTCAAATTTAA---AAATTATAAATG
*
7150426 AATTCGAATTTAAAAATTATAAAT
1 AATTCAAATTTAAAAATTATAAAT
7150450 CTAGATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
28 12 0.52
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (25 bp):
AATTCAAATTTAAAAATTATAAATG
Found at i:7154843 original size:11 final size:11
Alignment explanation
Indices: 7154827--7154857 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
7154817 GTTATTTTTT
7154827 TATTGTTTCGC
1 TATTGTTTCGC
7154838 TATTGTTTCGC
1 TATTGTTTCGC
7154849 TATTGTTTC
1 TATTGTTTC
7154858 ATTGTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.58
Consensus pattern (11 bp):
TATTGTTTCGC
Found at i:7155639 original size:30 final size:34
Alignment explanation
Indices: 7155578--7155637 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 34
7155568 ATGTTTTTTT
7155578 ATTCATTTCTACTTTCTTTTTCTTATATTTTATG
1 ATTCATTTCTACTTTCTTTTTCTTATATTTTATG
7155612 ATTC-TTTCTA-TTT-TTTTT-TTA-ATTTT
1 ATTCATTTCTACTTTCTTTTTCTTATATTTT
7155638 TAAGAAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 5 0.19
30 3 0.12
31 5 0.19
32 3 0.12
33 6 0.23
34 4 0.15
ACGTcount: A:0.17, C:0.12, G:0.02, T:0.70
Consensus pattern (34 bp):
ATTCATTTCTACTTTCTTTTTCTTATATTTTATG
Found at i:7160080 original size:90 final size:90
Alignment explanation
Indices: 7159927--7160108 Score: 355
Period size: 90 Copynumber: 2.0 Consensus size: 90
7159917 TGAATCAAGA
7159927 TGGGATCAAGAAAATATTTTCAATGATGGGTTAGGTGAGGCTAAAATATTAAATAAAATTCAGGG
1 TGGGATCAAGAAAATATTTTCAATGATGGGTTAGGTGAGGCTAAAATATTAAATAAAATTCAGGG
7159992 CAAGGTGAGAAAAAAAATCTCCACC
66 CAAGGTGAGAAAAAAAATCTCCACC
*
7160017 TGGGATCAAGAAAATCTTTTCAATGATGGGTTAGGTGAGGCTAAAATATTAAATAAAATTCAGGG
1 TGGGATCAAGAAAATATTTTCAATGATGGGTTAGGTGAGGCTAAAATATTAAATAAAATTCAGGG
7160082 CAAGGTGAGAAAAAAAATCTCCACC
66 CAAGGTGAGAAAAAAAATCTCCACC
7160107 TG
1 TG
7160109 AGTCTATTGT
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 91 1.00
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.25
Consensus pattern (90 bp):
TGGGATCAAGAAAATATTTTCAATGATGGGTTAGGTGAGGCTAAAATATTAAATAAAATTCAGGG
CAAGGTGAGAAAAAAAATCTCCACC
Found at i:7162919 original size:17 final size:17
Alignment explanation
Indices: 7162885--7162918 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7162875 TATGGTATGG
*
7162885 TAAAATATTAAAGAAAA
1 TAAAATATAAAAGAAAA
7162902 TAAATATATAAAAGAAA
1 TAAA-ATATAAAAGAAA
7162919 TGAGATACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (17 bp):
TAAAATATAAAAGAAAA
Done.