Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 23 of 136
Found at i:7166270 original size:91 final size:91
Alignment explanation
Indices: 7166131--7166319 Score: 263
Period size: 91 Copynumber: 2.1 Consensus size: 91
7166121 ATAAATACCT
* *
7166131 AAGTAACAAATAATACACAAATTGATAGTTTAAATATTACATTCGATATTTTTAAAGTACA-AGT
1 AAGTAACAAATAATACACAAATTGATAGTTTAAATATCACATTCGATATTTTCAAAGTACAGA-T
* *
7166195 ACCACATTGGTCATTTTATAAAAGAAC
65 ACCACATTGGACATTTTATAAAACAAC
* * ** * *
7166222 AAGTACCAAATAATACATAAATTGATAGTTTAGGTATCATATTGGATATTTTCAAAGTACAGATA
1 AAGTAACAAATAATACACAAATTGATAGTTTAAATATCACATTCGATATTTTCAAAGTACAGATA
*
7166287 CCACATTGGACATTTTATAAAACTAC
66 CCACATTGGACATTTTATAAAACAAC
7166313 AAGTAAC
1 AAGTAAC
7166320 CTTATTTCAT
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
91 84 0.99
92 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (91 bp):
AAGTAACAAATAATACACAAATTGATAGTTTAAATATCACATTCGATATTTTCAAAGTACAGATA
CCACATTGGACATTTTATAAAACAAC
Found at i:7167460 original size:66 final size:65
Alignment explanation
Indices: 7167354--7167489 Score: 245
Period size: 66 Copynumber: 2.1 Consensus size: 65
7167344 GTTGCTCGAA
*
7167354 CTTGGGCATTCACAGATACGTGTCCGACTAAATACATTCAATTACTCAGAACTTTTTTTCATGTA
1 CTTGGGCATTCACAGATACGTGTACGACTAAATACATTCAATTACTC-GAACTTTTTTTCATGTA
7167419 T
65 T
7167420 CTTGGGCATTCACAGATACGTGTACGACTAAATACATTCAATTACTCGAACTTTTTTTCATGTAT
1 CTTGGGCATTCACAGATACGTGTACGACTAAATACATTCAATTACTCGAACTTTTTTTCATGTAT
*
7167485 TTTGG
1 CTTGG
7167490 AGGACTTTTG
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
65 22 0.32
66 46 0.68
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (65 bp):
CTTGGGCATTCACAGATACGTGTACGACTAAATACATTCAATTACTCGAACTTTTTTTCATGTAT
Found at i:7182528 original size:5 final size:5
Alignment explanation
Indices: 7182518--7182548 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
7182508 TTATAAACAC
7182518 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T
7182549 ACATTAGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:7186900 original size:43 final size:43
Alignment explanation
Indices: 7186852--7186937 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
7186842 TATGTGATTG
* * *
7186852 ATATTGAAATGGAAAAGATGATAAATGAATATGAGATGAGAAA
1 ATATTGAAATGGAAAAGATAAGAAATGAATATGAGATAAGAAA
* *
7186895 ATATTGAAATGGAAAATATAAGAAATGATTATGAGATAAGAAA
1 ATATTGAAATGGAAAAGATAAGAAATGAATATGAGATAAGAAA
7186938 TGAAATATGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (43 bp):
ATATTGAAATGGAAAAGATAAGAAATGAATATGAGATAAGAAA
Found at i:7188439 original size:49 final size:49
Alignment explanation
Indices: 7188359--7188452 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
7188349 TCAAGAAGGG
* * *
7188359 ATAAATAGTGATAAGAGTGTAGACAGCGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAGAGTGTAAACAACGGAAGACCAAGTTTAGCAATGT
*
7188408 ATAAATAGTGATAAGAGTGTAAACAATGGAAGACCAAGTTTAGCA
1 ATAAATAGTGATAAGAGTGTAAACAACGGAAGACCAAGTTTAGCA
7188453 TTGCATAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGTAAACAACGGAAGACCAAGTTTAGCAATGT
Found at i:7189988 original size:21 final size:21
Alignment explanation
Indices: 7189924--7189988 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
7189914 CCTTATAAGC
* *
7189924 AAATATCATCAAAGT-TATAAT
1 AAATATAATCAAA-TATATCAT
* *
7189945 TAATATAA-CAAATA-AACATT
1 AAATATAATCAAATATATCA-T
7189965 AAATATAATCAAATATATCAT
1 AAATATAATCAAATATATCAT
7189986 AAA
1 AAA
7189989 ATTTACATAG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.09
20 12 0.35
21 16 0.47
22 3 0.09
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (21 bp):
AAATATAATCAAATATATCAT
Found at i:7191719 original size:13 final size:13
Alignment explanation
Indices: 7191667--7191719 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
7191657 AGTTTGGCAA
7191667 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
7191680 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
7191693 TGCTTTT-AAGAAG
1 TGCTTTTGAA-AAG
7191706 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
7191719 T
1 T
7191720 TTGGTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 2 0.06
13 30 0.88
14 2 0.06
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:7191762 original size:91 final size:90
Alignment explanation
Indices: 7191554--7191766 Score: 211
Period size: 91 Copynumber: 2.3 Consensus size: 90
7191544 TTAAGGGCTG
* * * * * *
7191554 GTTTAGCATTGCTTTTGAGAAGTGTTTTTAAAAAGTGCTGTGGAAAAGTGATTTTGAGAAGTATT
1 GTTTAGCATTGC-TGTCA-AAGTGCTTTTGAAAAGTGCTGTGGAAAAGTGATTTTAAGAAGTACT
* *
7191619 TTTGAAAAGTTTGGTTTAAGATTTAAGT
64 TTTGAAAAGTTTGGTTTAAAATTT-AGA
* * *
7191647 GTTTAGGGCTAGTT--TGGC-AA-TGCTTTTGAAAAGTGCTGTGGAAAAGTGCTTTTAAGAAGTG
1 GTTTA--GC-A-TTGCTGTCAAAGTGCTTTTGAAAAGTGCTGTGGAAAAGTGATTTTAAGAAGTA
7191708 CTTTTGAAAAGTTTGGTTTAAAATTT-GA
62 CTTTTGAAAAGTTTGGTTTAAAATTTAGA
7191736 GTTTAGCATTGCTGTCAAAAAGTGCTTTTGA
1 GTTTAGCATTGCTGTC--AAAGTGCTTTTGA
7191767 GAAATAAAAT
Statistics
Matches: 98, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
85 2 0.02
86 1 0.01
87 5 0.05
89 6 0.06
90 2 0.02
91 69 0.70
92 2 0.02
93 5 0.05
94 1 0.01
95 2 0.02
96 1 0.01
97 2 0.02
ACGTcount: A:0.29, C:0.06, G:0.25, T:0.40
Consensus pattern (90 bp):
GTTTAGCATTGCTGTCAAAGTGCTTTTGAAAAGTGCTGTGGAAAAGTGATTTTAAGAAGTACTTT
TGAAAAGTTTGGTTTAAAATTTAGA
Found at i:7196589 original size:55 final size:55
Alignment explanation
Indices: 7196505--7196615 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
7196495 GATCTGGAAA
7196505 GTATTGTTGCAAAATATTGGTGGCAGAAAGGTCATGTAAAAGGGTATTCATTGGT
1 GTATTGTTGCAAAATATTGGTGGCAGAAAGGTCATGTAAAAGGGTATTCATTGGT
7196560 GTATTGTTGCAAAATATTGGTGGCAGAAAGGTCATGTAAAAGGGTATTCATTGGT
1 GTATTGTTGCAAAATATTGGTGGCAGAAAGGTCATGTAAAAGGGTATTCATTGGT
7196615 G
1 G
7196616 CTCGTGGAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.31, C:0.07, G:0.30, T:0.32
Consensus pattern (55 bp):
GTATTGTTGCAAAATATTGGTGGCAGAAAGGTCATGTAAAAGGGTATTCATTGGT
Found at i:7198931 original size:31 final size:30
Alignment explanation
Indices: 7198893--7198971 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 30
7198883 TTAATATAAT
*
7198893 ATTTGGTACTAAAACTTAACACTTTTTCTTA
1 ATTTGGTACT-AAACTTAACACTTTTTCATA
*
7198924 ATTTGGTATCTAAACTTGACACTTTTTCATA
1 ATTTGGTA-CTAAACTTAACACTTTTTCATA
*
7198955 AGTTGGTACTTAAACTT
1 ATTTGGTAC-TAAACTT
7198972 TTTGGGGGTC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 1 0.02
31 40 0.93
32 2 0.05
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.44
Consensus pattern (30 bp):
ATTTGGTACTAAACTTAACACTTTTTCATA
Found at i:7199192 original size:24 final size:23
Alignment explanation
Indices: 7199165--7199210 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
7199155 TTTTTTTGTA
7199165 TTTTATATATTCAATTACTTTTAG
1 TTTTATATATTCAATTA-TTTTAG
* *
7199189 TTTTATTTATTTAATTATTTTA
1 TTTTATATATTCAATTATTTTA
7199211 TTAATTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTATATATTCAATTATTTTAG
Found at i:7199650 original size:30 final size:31
Alignment explanation
Indices: 7199615--7199704 Score: 105
Period size: 30 Copynumber: 2.9 Consensus size: 31
7199605 TTTTTAAAAA
*
7199615 AAATAAATTTTCAAGTAATCAAAAAATAATC
1 AAATAAATTTTCAAATAATCAAAAAATAATC
* * *
7199646 -AATAAATCTTT--ATTGATCAAAAAGGTAATC
1 AAATAAAT-TTTCAAATAATCAAAAA-ATAATC
7199676 AAATAAATTTTCAAATAATCAAAAAATAA
1 AAATAAATTTTCAAATAATCAAAAAATAA
7199705 AGAGAGATGG
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
29 10 0.21
30 15 0.31
31 13 0.27
32 10 0.21
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (31 bp):
AAATAAATTTTCAAATAATCAAAAAATAATC
Found at i:7200077 original size:19 final size:19
Alignment explanation
Indices: 7200053--7200139 Score: 78
Period size: 19 Copynumber: 4.7 Consensus size: 19
7200043 ATAAATTACG
*
7200053 CATCTTAGTTAATTGAGTT
1 CATCTTAGTTAATTAAGTT
7200072 CATCTTAGTTAATTAAG-T
1 CATCTTAGTTAATTAAGTT
* *
7200090 --TGTT-G-GAA-TAAGTTACT
1 CATCTTAGTTAATTAAG-T--T
7200107 CATCTTAGTTAATTAAGTT
1 CATCTTAGTTAATTAAGTT
7200126 CATCTTAGTTAATT
1 CATCTTAGTTAATT
7200140 TAATTGCTGG
Statistics
Matches: 54, Mismatches: 5, Indels: 18
0.70 0.06 0.23
Matches are distributed among these distances:
13 4 0.07
14 2 0.04
15 1 0.02
16 3 0.06
17 1 0.02
18 1 0.02
19 34 0.63
20 1 0.02
21 3 0.06
22 4 0.07
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46
Consensus pattern (19 bp):
CATCTTAGTTAATTAAGTT
Found at i:7200097 original size:54 final size:55
Alignment explanation
Indices: 7200033--7200154 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 55
7200023 ATAAGTACTT
*
7200033 AGTTGCTGGAATAAATTACGCATCTTAGTTAATTGAGTTCATCTTAGTTAA-TTA
1 AGTTGCTGGAATAAATTACGCATCTTAGTTAATTAAGTTCATCTTAGTTAATTTA
* * *
7200087 AGTTGTTGGAATAAGTTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTTA
1 AGTTGCTGGAATAAATTACGCATCTTAGTTAATTAAGTTCATCTTAGTTAATTTA
7200142 A-TTGCTGGAATAA
1 AGTTGCTGGAATAA
7200155 TTTATTGTTG
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 58 0.94
55 4 0.06
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (55 bp):
AGTTGCTGGAATAAATTACGCATCTTAGTTAATTAAGTTCATCTTAGTTAATTTA
Found at i:7203560 original size:26 final size:25
Alignment explanation
Indices: 7203522--7203588 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
7203512 TTTATTTCTG
* *
7203522 TATTTT-TTATTATTATTTTCGTTAT
1 TATTTTATTTTTATTATTTTC-TCAT
* *
7203547 TATTTTATTTTTATTTCTTTTCTCGT
1 TATTTTATTTTTA-TTATTTTCTCAT
7203573 TATTTTATTATTTATT
1 TATTTTATT-TTTATT
7203589 TTATTATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 6 0.17
26 18 0.51
27 11 0.31
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.73
Consensus pattern (25 bp):
TATTTTATTTTTATTATTTTCTCAT
Found at i:7203589 original size:12 final size:12
Alignment explanation
Indices: 7203526--7203597 Score: 60
Period size: 12 Copynumber: 5.9 Consensus size: 12
7203516 TTTCTGTATT
7203526 TTTTATTA-TTA
1 TTTTATTATTTA
*
7203537 TTTTCGTTA-TTA
1 TTTT-ATTATTTA
7203549 TTTTATT-TTTA
1 TTTTATTATTTA
* *
7203560 TTTCTTTTCTCGTTA
1 TTT-TATTAT--TTA
7203575 TTTTATTATTTA
1 TTTTATTATTTA
7203587 TTTTATTATTT
1 TTTTATTATTT
7203598 TAGATATTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
11 12 0.24
12 27 0.54
13 1 0.02
14 4 0.08
15 6 0.12
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTATTATTTA
Found at i:7215377 original size:51 final size:49
Alignment explanation
Indices: 7215308--7215635 Score: 172
Period size: 51 Copynumber: 6.8 Consensus size: 49
7215298 CATCATAGCA
* *
7215308 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACG
1 AATCTTATCTCTCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA--TACG
* **
7215359 AATCTTATCTCTTTGAAGTTGCAGTGGAGTAGATTGAAA-CTA-AAT-C-
1 AATCTTATCTCTCTGAAGTTGCAGTGGAACAGATT-AAAGCTACAATACG
* * * * * *
7215405 ---C-TATAC-CTCTCAAGTTGCA-T-TAAGTCGGATTAAATCTACCATGGCG
1 AATCTTAT-CTCTCTGAAGTTGCAGTGGAA--CAGATTAAAGCTACAAT-ACG
* * *
7215451 AATCTTATCTC-CTTGAAGTTGCAGTGGAGCAGATTGAAGCAAC-A-A-G
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAACAGATTAAAGCTACAATACG
* ** * *
7215497 --TCATATAC-CTCTGAAGTTGCAGTGGTTCGGATTAAATCTACAATA-G
1 AATCTTAT-CTCTCTGAAGTTGCAGTGGAACAGATTAAAGCTACAATACG
* * *
7215543 CAAGTCTTATCTCTCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACA
1 -AA-TCTTATCTCTCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA--TACG
* * * *
7215596 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGC
1 AATCTTATCTCTCTGAAGTTGCAGTGGAACAGATTAAAGC
7215636 GATAAGTCCC
Statistics
Matches: 207, Mismatches: 41, Indels: 58
0.68 0.13 0.19
Matches are distributed among these distances:
40 1 0.00
41 4 0.02
42 21 0.10
43 4 0.02
44 30 0.14
45 4 0.02
46 3 0.01
47 1 0.00
48 1 0.00
49 5 0.02
50 59 0.29
51 66 0.32
52 8 0.04
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (49 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAACAGATTAAAGCTACAATACG
Found at i:7215588 original size:50 final size:49
Alignment explanation
Indices: 7215453--7215763 Score: 150
Period size: 50 Copynumber: 6.4 Consensus size: 49
7215443 CCATGGCGAA
** *
7215453 TCTTATCTC-CTTGAAGTTGCAGTGGAGCAGATTGAAG---C-A-ACAAG
1 TCTTATCTCTC-TGAAGTTGCAGTGGAATAGATTAAAGCTACAATACAAG
* * * *
7215497 TCATATAC-CTCTGAAGTTGCAGTGG-TTCGGATTAAATCTACAATAGCAAG
1 TCTTAT-CTCTCTGAAGTTGCAGTGGAAT-AGATTAAAGCTACAATA-CAAG
* *
7215547 TCTTATCTCTCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAATAGATTAAAGCTACAA--TACAAG
* * ** * *
7215598 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG---CGAT--AAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAATAGATTAAAGCTACAATACAAG
** * * * * * *
7215642 TCCCATAC-CTCTGAAGTTGTAGAGG-GTCGGATTAAATCTACCATAGCAAG
1 TCTTAT-CTCTCTGAAGTTGCAGTGGAAT-AGATTAAAGCTACAATA-CAAG
* * * * *
7215692 TCTTATCTCCCTGAAGTTACACTGGAATAGACTAAAGCTACAAGCTACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAATAGATTAAAGCTACAA--TACAAG
*
7215743 TCTTATCTC-CTAAAGTTGCAG
1 TCTTATCTCTCTGAAGTTGCAG
7215764 CAGAATAGGT
Statistics
Matches: 195, Mismatches: 47, Indels: 44
0.68 0.16 0.15
Matches are distributed among these distances:
43 1 0.01
44 51 0.26
45 3 0.02
46 1 0.01
47 4 0.02
48 3 0.02
49 3 0.02
50 77 0.39
51 48 0.25
52 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (49 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAATAGATTAAAGCTACAATACAAG
Found at i:7215590 original size:94 final size:93
Alignment explanation
Indices: 7215320--7215590 Score: 293
Period size: 94 Copynumber: 2.9 Consensus size: 93
7215310 TCTTATTTCC
* * * *
7215320 CTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA-CGAATCTTATCTCTTTGAAGTTGCAGT
1 CTGAAGTTGCAGTGG-TCGGATTAAATCTACAA--TAGCGAATCTTATCTCTCTGAAGTTGCAGT
*
7215384 GGAGTAGATTGAAA-CTA-AA-TCCTATACCT
63 GGAGTAGATT-AAAGCTACAAGTCATATACCT
* * * * *
7215413 CTCAAGTTGCATTAAGTCGGATTAAATCTACCATGGCGAATCTTATCTC-CTTGAAGTTGCAGTG
1 CTGAAGTTGCAGT-GGTCGGATTAAATCTACAATAGCGAATCTTATCTCTC-TGAAGTTGCAGTG
* * *
7215477 GAGCAGATTGAAGCAACAAGTCATATACCT
64 GAGTAGATTAAAGCTACAAGTCATATACCT
7215507 CTGAAGTTGCAGTGGTTCGGATTAAATCTACAATAGC-AAGTCTTATCTCTCTGAAGTTGCAGTG
1 CTGAAGTTGCAGTGG-TCGGATTAAATCTACAATAGCGAA-TCTTATCTCTCTGAAGTTGCAGTG
* *
7215571 GAATAGACTAAAGCTACAAG
64 GAGTAGATTAAAGCTACAAG
7215591 CTACAAATCT
Statistics
Matches: 146, Mismatches: 23, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
91 3 0.02
92 36 0.25
93 29 0.20
94 77 0.53
95 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (93 bp):
CTGAAGTTGCAGTGGTCGGATTAAATCTACAATAGCGAATCTTATCTCTCTGAAGTTGCAGTGGA
GTAGATTAAAGCTACAAGTCATATACCT
Found at i:7215718 original size:145 final size:145
Alignment explanation
Indices: 7215451--7215763 Score: 502
Period size: 145 Copynumber: 2.2 Consensus size: 145
7215441 TACCATGGCG
* * *
7215451 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAGTCATATACCTCTGAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAACAAGTCACATACCTCTGAAGTTG
* * * * *
7215516 CAGTGGTTCGGATTAAATCTACAATAGCAAGTCTTATCTCTCTGAAGTTGCAGTGGAATAGACTA
66 CAGAGGGTCGGATTAAATCTACAATAGCAAGTCTTATCTCCCTGAAGTTACACTGGAATAGACTA
7215581 AAGCTACAAGCTACA
131 AAGCTACAAGCTACA
* * *
7215596 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCGATAAGTCCCATACCTCTGAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAACAAGTCACATACCTCTGAAGTTG
* *
7215661 TAGAGGGTCGGATTAAATCTACCATAGCAAGTCTTATCTCCCTGAAGTTACACTGGAATAGACTA
66 CAGAGGGTCGGATTAAATCTACAATAGCAAGTCTTATCTCCCTGAAGTTACACTGGAATAGACTA
7215726 AAGCTACAAGCTACA
131 AAGCTACAAGCTACA
7215741 AATCTTATCT-CCTAAAGTTGCAG
1 AATCTTATCTCCCTAAAGTTGCAG
7215764 CAGAATAGGT
Statistics
Matches: 155, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
144 13 0.08
145 142 0.92
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (145 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAACAAGTCACATACCTCTGAAGTTG
CAGAGGGTCGGATTAAATCTACAATAGCAAGTCTTATCTCCCTGAAGTTACACTGGAATAGACTA
AAGCTACAAGCTACA
Found at i:7216448 original size:2 final size:2
Alignment explanation
Indices: 7216441--7216486 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
7216431 TTTTCCCTTT
* *
7216441 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TC T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7216482 TA TA T
1 TA TA T
7216487 GAAAAATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:7217324 original size:79 final size:79
Alignment explanation
Indices: 7217230--7217405 Score: 352
Period size: 79 Copynumber: 2.2 Consensus size: 79
7217220 TTCACATTGG
7217230 TCTTTTATTTATTTATTTTATACCAATTTATCCTTTTAATTTAATTTAAGTTATGATTAAGTCCT
1 TCTTTTATTTATTTATTTTATACCAATTTATCCTTTTAATTTAATTTAAGTTATGATTAAGTCCT
7217295 TTACTTATTTTAAT
66 TTACTTATTTTAAT
7217309 TCTTTTATTTATTTATTTTATACCAATTTATCCTTTTAATTTAATTTAAGTTATGATTAAGTCCT
1 TCTTTTATTTATTTATTTTATACCAATTTATCCTTTTAATTTAATTTAAGTTATGATTAAGTCCT
7217374 TTACTTATTTTAAT
66 TTACTTATTTTAAT
7217388 TCTTTTATTTATTTATTT
1 TCTTTTATTTATTTATTT
7217406 ACTTATTTGG
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 97 1.00
ACGTcount: A:0.27, C:0.10, G:0.03, T:0.60
Consensus pattern (79 bp):
TCTTTTATTTATTTATTTTATACCAATTTATCCTTTTAATTTAATTTAAGTTATGATTAAGTCCT
TTACTTATTTTAAT
Found at i:7217660 original size:21 final size:23
Alignment explanation
Indices: 7217613--7217662 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 23
7217603 TTTTTTATTA
7217613 TTTTAGATCATGTTTATTTATCCT
1 TTTTAGATCATG-TTATTTATCCT
7217637 TTTTA-ATCATG-TATTT-TCCAT
1 TTTTAGATCATGTTATTTATCC-T
7217658 TTTTA
1 TTTTA
7217663 TTTTTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.12
21 11 0.44
23 6 0.24
24 5 0.20
ACGTcount: A:0.22, C:0.12, G:0.06, T:0.60
Consensus pattern (23 bp):
TTTTAGATCATGTTATTTATCCT
Found at i:7220752 original size:19 final size:20
Alignment explanation
Indices: 7220715--7220751 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7220705 GTTACTCATT
*
7220715 TTTTTTTAGAATTAATTTTA
1 TTTTTTTAGAATGAATTTTA
7220735 TTTTTTTA-AATG-ATTTT
1 TTTTTTTAGAATGAATTTT
7220752 TTACAGGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 3 0.19
20 8 0.50
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTTTAGAATGAATTTTA
Found at i:7221094 original size:21 final size:22
Alignment explanation
Indices: 7221061--7221101 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7221051 ACAAAAGAAT
*
7221061 TTTTTCATGTAAAAACTCAAAC
1 TTTTTCATATAAAAACTCAAAC
*
7221083 TTTTTC-TATAAAATCTCAA
1 TTTTTCATATAAAAACTCAA
7221102 GTAACTCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.41
Consensus pattern (22 bp):
TTTTTCATATAAAAACTCAAAC
Found at i:7224268 original size:35 final size:36
Alignment explanation
Indices: 7224224--7224300 Score: 88
Period size: 35 Copynumber: 2.2 Consensus size: 36
7224214 GAGGGTCCAA
* *
7224224 GTTCAAGGG-TCTAGGGTTTAAGGTCCAAGGTTTATG
1 GTTCAAGGGTTC-AGGGTTCAAGGTCCAAGATTTATG
*
7224260 GTTC-AGGGTTCAGGGTTCAAGGTCTAAGATTTA-G
1 GTTCAAGGGTTCAGGGTTCAAGGTCCAAGATTTATG
*
7224294 GGTCAAG
1 GTTCAAG
7224301 AGTTTAAGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
34 4 0.11
35 25 0.71
36 6 0.17
ACGTcount: A:0.23, C:0.12, G:0.34, T:0.31
Consensus pattern (36 bp):
GTTCAAGGGTTCAGGGTTCAAGGTCCAAGATTTATG
Found at i:7224295 original size:21 final size:21
Alignment explanation
Indices: 7224271--7224315 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
7224261 TTCAGGGTTC
7224271 AGGGTTCAAG-GTCTAAGATTT
1 AGGG-TCAAGAGTCTAAGATTT
* *
7224292 AGGGTCAAGAGTTTAAGGTTT
1 AGGGTCAAGAGTCTAAGATTT
7224313 AGG
1 AGG
7224316 ATCCAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (21 bp):
AGGGTCAAGAGTCTAAGATTT
Found at i:7224325 original size:21 final size:21
Alignment explanation
Indices: 7224276--7224331 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
7224266 GGTTCAGGGT
* * *
7224276 TCAAG-GTCTAAGATTTAGGG
1 TCAAGAGTTTAAGGTTTAGGA
7224296 TCAAGAGTTTAAGGTTTAGGA
1 TCAAGAGTTTAAGGTTTAGGA
*
7224317 TCCAA-AGTTCAAGGT
1 T-CAAGAGTTTAAGGT
7224332 CGAGGGTCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 5 0.17
21 22 0.73
22 3 0.10
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (21 bp):
TCAAGAGTTTAAGGTTTAGGA
Found at i:7237864 original size:25 final size:24
Alignment explanation
Indices: 7237805--7237873 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
7237795 TGTTATTAGC
* * *
7237805 TCTTATGAGCATCCCGATATTTGG
1 TCTTATGAGCTTCCCGTTATATGG
* *
7237829 CCTTCTCGAGCTTCCCGTTATATGG
1 TCTTAT-GAGCTTCCCGTTATATGG
7237854 TTCTTATGAGCTTCCCGTTA
1 -TCTTATGAGCTTCCCGTTA
7237874 ATAGCTTTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 4 0.11
25 28 0.78
26 4 0.11
ACGTcount: A:0.16, C:0.26, G:0.19, T:0.39
Consensus pattern (24 bp):
TCTTATGAGCTTCCCGTTATATGG
Found at i:7241579 original size:21 final size:21
Alignment explanation
Indices: 7241540--7241579 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7241530 CAACAATTTC
* * *
7241540 ATCTTAAAATTTTATTTAAAT
1 ATCTTAAAAGTTAAATTAAAT
7241561 ATCTTAAAAGTTAAATTAA
1 ATCTTAAAAGTTAAATTAA
7241580 TGGAAAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (21 bp):
ATCTTAAAAGTTAAATTAAAT
Found at i:7242313 original size:19 final size:19
Alignment explanation
Indices: 7242273--7242312 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7242263 TTTTGAGCAA
7242273 TTTAATTTTTTTATATTCT
1 TTTAATTTTTTTATATTCT
7242292 TTTAACTTTTTTT-TATT-T
1 TTTAA-TTTTTTTATATTCT
7242310 TTT
1 TTT
7242313 TCTATCCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 9 0.45
20 7 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTAATTTTTTTATATTCT
Found at i:7243871 original size:13 final size:13
Alignment explanation
Indices: 7243853--7243877 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7243843 GGTTACAGAT
7243853 TTTTTATTTTTTA
1 TTTTTATTTTTTA
7243866 TTTTTATTTTTT
1 TTTTTATTTTTT
7243878 GTGTGTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:7247846 original size:212 final size:213
Alignment explanation
Indices: 7247546--7247938 Score: 558
Period size: 212 Copynumber: 1.8 Consensus size: 213
7247536 AGGAGAGGCT
** * ** *
7247546 TCAACATTAGAAACCAATTTCATTTCATCGGTCTCAACCACTATAGATGCCGCAGTCTTCCTAAT
1 TCAACATTAGAAACCAATTTCATTTCATCCATCTCAACCACTACAGATGCAACAGTCTTACTAAT
* ** * *
7247611 AGAACCGGACCTATCGCGACTCTTTCGTCTCCTAGAAGAAGAATT-AGAATAATAAT-CTCGTCT
66 AGAACCGGACATATCAAGACTCTTTCGTCTCCTAGAAGAAG-ATTCAAAATAATAATCCTCGTCC
*
7247674 GA-TCAGACCCTTCAGGAAGTGATTCATCCCTCAAAGAATGGGAGTTAGAATCCCTATCCGGCAC
130 GAGTCAG-CCCTCCAGGAAGTGATTCATCCCTCAAAGAATGGGAGTTAGAATCCCTATCCGGCAC
7247738 ACCGAGGTCCATGAATGTAA
194 ACCGAGGTCCATGAATGTAA
* *
7247758 TCAACATTAGAAACCAATTTCATTTCATCCATCTCAACCGCTACAGCTGCAACAGTCTTACTAAT
1 TCAACATTAGAAACCAATTTCATTTCATCCATCTCAACCACTACAGATGCAACAGTCTTACTAAT
* * * *
7247823 AGAACTGGACATGTCAAGACTCTTTCTTCTCCTAGAAGAAGATTCAAAATAATAATCCTTGTCCG
66 AGAACCGGACATATCAAGACTCTTTCGTCTCCTAGAAGAAGATTCAAAATAATAATCCTCGTCCG
* * *
7247888 AGTTAGCCCTCCAGGCAGTGATTCATCCCTCAAAGAATTGGAGTTAGAATC
131 AGTCAGCCCTCCAGGAAGTGATTCATCCCTCAAAGAATGGGAGTTAGAATC
7247939 ACCATCTAGA
Statistics
Matches: 157, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
211 3 0.02
212 102 0.65
213 49 0.31
214 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (213 bp):
TCAACATTAGAAACCAATTTCATTTCATCCATCTCAACCACTACAGATGCAACAGTCTTACTAAT
AGAACCGGACATATCAAGACTCTTTCGTCTCCTAGAAGAAGATTCAAAATAATAATCCTCGTCCG
AGTCAGCCCTCCAGGAAGTGATTCATCCCTCAAAGAATGGGAGTTAGAATCCCTATCCGGCACAC
CGAGGTCCATGAATGTAA
Found at i:7248240 original size:238 final size:238
Alignment explanation
Indices: 7247762--7248343 Score: 704
Period size: 238 Copynumber: 2.4 Consensus size: 238
7247752 ATGTAATCAA
* ** *
7247762 CATTAGAAACCAATTTCATTTCATCCATCTCAACCGCTACAGCTGCAACAGTCTTACTAATAGAA
1 CATTAGAAACCAATTTCATTTCATCCATCTCAACCACTACAGCTGCAACAAACTTACCAATAGAA
*
7247827 CTGGACATGTCAAGACTCTTTCTTCTCCTAGAAGAAGATTCAAAATAATAATCCTTGTCCGAGTT
66 CTGGACATGTCAAGAC-CTTTCTTCTCCTAGAAGAAGAATCAAAATAATAATCCTTGTCCGAGTT
* * * * *
7247892 AGCCCTCCAGGCAGTGATTCATCCCTCAAAGAATTGGAGTTAGAATCACCATCTAGAACACCGAG
130 AGACCTCCAGGAAGTGATTCACCCCTCAAAGAATTGGAGTTAGAATCAACATCTAGAACACCAAG
** *
7247957 CTTAGATCCATTGATGTAATCAACAGTTGCAGGAAAGACCTTTG
195 CTTAGATCCATTGACATAATAAACAGTTGCAGGAAAGACCTTTG
* ** * **
7248001 CATTAGAAACCAATTTCAATTCATCCATCT-GGCCTACTATAGCTGCAGTAAACTTACCAATAGA
1 CATTAGAAACCAATTTCATTTCATCCATCTCAACC-ACTACAGCTGCAACAAACTTACCAATAGA
* **
7248065 ACTGGACCTGTCAAGA-CTTTCTTCTCCTAGAAGAAGAATCAAAATAATAATCCCTTGTTTGAGT
65 ACTGGACATGTCAAGACCTTTCTTCTCCTAGAAGAAGAATCAAAATAATAAT-CCTTGTCCGAGT
* * * * * * *
7248129 TGGATCTCCGGGAAGTGATTCACCCCTCAAAGAATTGGAGTTGGAATCAATATCTAGCACATCAA
129 TAGACCTCCAGGAAGTGATTCACCCCTCAAAGAATTGGAGTTAGAATCAACATCTAGAACACCAA
* * *
7248194 GCTTAGGTCCTTTGACATAATAAACAGTTGCAGGAGAGACCTTTG
194 GCTTAGATCCATTGACATAATAAACAGTTGCAGGAAAGACCTTTG
* *** **
7248239 CATTAGAAACTC-ATTTCATTTCATCCATCTCAACCACTACAGCTGCAGCAGTGTTTA-TTATAG
1 CATTAGAAAC-CAATTTCATTTCATCCATCTCAACCACTACAGCTGCAACA-AACTTACCAATAG
* * * *
7248302 AACTGGACCTATCGAGACTCTTTCTTCTCCTAGATGAAGAAT
64 AACTGGACATGTCAAGAC-CTTTCTTCTCCTAGAAGAAGAAT
7248344 TTGAATAATA
Statistics
Matches: 291, Mismatches: 45, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
237 34 0.12
238 163 0.56
239 72 0.25
240 22 0.08
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (238 bp):
CATTAGAAACCAATTTCATTTCATCCATCTCAACCACTACAGCTGCAACAAACTTACCAATAGAA
CTGGACATGTCAAGACCTTTCTTCTCCTAGAAGAAGAATCAAAATAATAATCCTTGTCCGAGTTA
GACCTCCAGGAAGTGATTCACCCCTCAAAGAATTGGAGTTAGAATCAACATCTAGAACACCAAGC
TTAGATCCATTGACATAATAAACAGTTGCAGGAAAGACCTTTG
Found at i:7248639 original size:27 final size:26
Alignment explanation
Indices: 7248563--7248642 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 26
7248553 TTGATTAGTC
**
7248563 AAAAATCATTAAAAATTATATTTTCTA
1 AAAAAT-ATTAAAAATTATAAATTCTA
* *
7248590 AAAAAAATTAAAAATGATAATAAATTGTA
1 AAAAATATTAAAAAT--T-ATAAATTCTA
7248619 AAAAATATTGAAAAATTATAAATT
1 AAAAATATT-AAAAATTATAAATT
7248643 AAATAAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
26 9 0.20
27 12 0.27
28 2 0.05
29 15 0.34
30 6 0.14
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.34
Consensus pattern (26 bp):
AAAAATATTAAAAATTATAAATTCTA
Found at i:7249260 original size:25 final size:25
Alignment explanation
Indices: 7249206--7249262 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
7249196 GTTTTAAAAT
*
7249206 ATTTTTTACATTTTGAATAATTTTA
1 ATTTTTTACATTTTGAATAATTATA
*
7249231 CTTTTTATA-ATTTTAGAAT-ATTATA
1 ATTTTT-TACATTTT-GAATAATTATA
7249256 ATTTTTT
1 ATTTTTT
7249263 TTAAAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
24 1 0.04
25 20 0.74
26 6 0.22
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (25 bp):
ATTTTTTACATTTTGAATAATTATA
Found at i:7255409 original size:69 final size:69
Alignment explanation
Indices: 7255298--7255482 Score: 352
Period size: 69 Copynumber: 2.7 Consensus size: 69
7255288 AAGAAACCAC
* *
7255298 ATAATTAATTCAAAGAACTGGGATTTCAAACATGAGGCATCTGCAAAATTGTTTTGCTTGAATGA
1 ATAATTAATTCAAAGAATTGGGGTTTCAAACATGAGGCATCTGCAAAATTGTTTTGCTTGAATGA
7255363 TCTA
66 TCTA
7255367 ATAATTAATTCAAAGAATTGGGGTTTCAAACATGAGGCATCTGCAAAATTGTTTTGCTTGAATGA
1 ATAATTAATTCAAAGAATTGGGGTTTCAAACATGAGGCATCTGCAAAATTGTTTTGCTTGAATGA
7255432 TCTA
66 TCTA
7255436 ATAATTAATTCAAAGAATTGGGGTTTCAAACATGAGGCATCTGCAAA
1 ATAATTAATTCAAAGAATTGGGGTTTCAAACATGAGGCATCTGCAAA
7255483 TTATGTCAAA
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 114 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (69 bp):
ATAATTAATTCAAAGAATTGGGGTTTCAAACATGAGGCATCTGCAAAATTGTTTTGCTTGAATGA
TCTA
Found at i:7261998 original size:25 final size:25
Alignment explanation
Indices: 7261915--7262044 Score: 104
Period size: 25 Copynumber: 5.3 Consensus size: 25
7261905 ACCCTCTCTC
**
7261915 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATAA
* * * *
7261940 GAGTCATGTAACAGGAAGCTTATCCA
1 GAGCCATATAACAGGAAGCTCAT-AA
* *
7261966 GA-CTATATAATAGGAAGCTCATAA
1 GAGCCATATAACAGGAAGCTCATAA
* *
7261990 GAGCCATAT-TCAGGAAGCTCATAC
1 GAGCCATATAACAGGAAGCTCATAA
* * **
7262014 GAGCCA-ATAACGGGTAGCTCCGAA
1 GAGCCATATAACAGGAAGCTCATAA
7262038 GAGCCAT
1 GAGCCAT
7262045 TAATCGAGAA
Statistics
Matches: 80, Mismatches: 21, Indels: 8
0.73 0.19 0.07
Matches are distributed among these distances:
23 2 0.03
24 36 0.45
25 40 0.50
26 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATAA
Found at i:7262059 original size:25 final size:24
Alignment explanation
Indices: 7262029--7262158 Score: 88
Period size: 25 Copynumber: 5.2 Consensus size: 24
7262019 AATAACGGGT
7262029 AGCTCCGAAGAGCCATTAATCGAGA
1 AGCTCC-AAGAGCCATTAATCGAGA
* *
7262054 AGCTCCAGATAGCCA-TATATCGGGA
1 AGCTCCA-AGAGCCATTA-ATCGAGA
* *
7262079 AG-TTCAAGCGAGCCAAT-ATCGAGA
1 AGCTCCAA--GAGCCATTAATCGAGA
*
7262103 AGCTCCGAAGAACCATTAATC-AGGA
1 AGCTCC-AAGAGCCATTAATCGA-GA
* *
7262128 AGCTCACAAAGAGCCTTTAATCGGGA
1 AGCTC-C-AAGAGCCATTAATCGAGA
7262154 AGCTC
1 AGCTC
7262159 ATGAAGAGTC
Statistics
Matches: 82, Mismatches: 12, Indels: 21
0.71 0.10 0.18
Matches are distributed among these distances:
23 1 0.01
24 21 0.26
25 37 0.45
26 23 0.28
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (24 bp):
AGCTCCAAGAGCCATTAATCGAGA
Found at i:7262080 original size:74 final size:76
Alignment explanation
Indices: 7261973--7262160 Score: 212
Period size: 74 Copynumber: 2.6 Consensus size: 76
7261963 CCAGACTATA
* * * *
7261973 TAAT-AGGAAGCTCA-TAAGAGCCATAT-TCAGGAAGCTCATA-CGAGCCAATAACGGGTAGCTC
1 TAATCAGGAAGCTCACAAAGAGCCATATATCGGGAAGCTCATAGCGAGCCAATAACGAGAAGCTC
*
7262034 CGAAGAGCCAT
66 CGAAGAACCAT
* * * *
7262045 TAATC-GAGAAGCTC-CAGATAGCCATATATCGGGAAGTTCA-AGCGAGCCAATATCGAGAAGCT
1 TAATCAG-GAAGCTCACAAAGAGCCATATATCGGGAAGCTCATAGCGAGCCAATAACGAGAAGCT
7262107 CCGAAGAACCAT
65 CCGAAGAACCAT
*
7262119 TAATCAGGAAGCTCACAAAGAGCC-TTTAATCGGGAAGCTCAT
1 TAATCAGGAAGCTCACAAAGAGCCATAT-ATCGGGAAGCTCAT
7262161 GAAGAGTCAT
Statistics
Matches: 94, Mismatches: 13, Indels: 14
0.78 0.11 0.12
Matches are distributed among these distances:
72 5 0.05
73 17 0.18
74 52 0.55
75 20 0.21
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (76 bp):
TAATCAGGAAGCTCACAAAGAGCCATATATCGGGAAGCTCATAGCGAGCCAATAACGAGAAGCTC
CGAAGAACCAT
Found at i:7262154 original size:26 final size:26
Alignment explanation
Indices: 7262096--7262159 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
7262086 GCGAGCCAAT
* *
7262096 ATCGAGAAGCTC-CGAAGAACCATTA
1 ATCGGGAAGCTCACAAAGAACCATTA
* * *
7262121 ATCAGGAAGCTCACAAAGAGCCTTTA
1 ATCGGGAAGCTCACAAAGAACCATTA
7262147 ATCGGGAAGCTCA
1 ATCGGGAAGCTCA
7262160 TGAAGAGTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 10 0.31
26 22 0.69
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
ATCGGGAAGCTCACAAAGAACCATTA
Found at i:7262165 original size:26 final size:26
Alignment explanation
Indices: 7261978--7262179 Score: 113
Period size: 24 Copynumber: 8.1 Consensus size: 26
7261968 CTATATAATA
* * *
7261978 GGAAGCTCA-TAAGAGCCA-TATTCA
1 GGAAGCTCACGAAGAGCCATTAATCG
* * *
7262002 GGAAGCTCA-TACGAGCCAATAA-CG
1 GGAAGCTCACGAAGAGCCATTAATCG
*
7262026 GGTAGCTC-CGAAGAGCCATTAATCG
1 GGAAGCTCACGAAGAGCCATTAATCG
* *
7262051 AGAAGCTC-C-AGATAGCCA-TATATCG
1 GGAAGCTCACGA-AGAGCCATTA-ATCG
* * * *
7262076 GGAAGTTCAAG-CGAGCCAAT-ATCG
1 GGAAGCTCACGAAGAGCCATTAATCG
* * *
7262100 AGAAGCTC-CGAAGAACCATTAATCA
1 GGAAGCTCACGAAGAGCCATTAATCG
* *
7262125 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACGAAGAGCCATTAATCG
* *
7262151 GGAAGCTCATGAAGAGTCA-TATATCG
1 GGAAGCTCACGAAGAGCCATTA-ATCG
7262177 GGA
1 GGA
7262180 CGTTCATAAG
Statistics
Matches: 135, Mismatches: 31, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
23 1 0.01
24 54 0.40
25 44 0.33
26 36 0.27
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
GGAAGCTCACGAAGAGCCATTAATCG
Found at i:7264722 original size:26 final size:27
Alignment explanation
Indices: 7264683--7264749 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
7264673 AATAACCGGT
7264683 AGCTC-CGAAGAGCCAATTAA-CGGGA
1 AGCTCACGAAGAGCCAATTAATCGGGA
*
7264708 AGCTCACGAAGAGCC-TTTAATCGGGA
1 AGCTCACGAAGAGCCAATTAATCGGGA
*
7264734 TGCTCACGAAGAGCCA
1 AGCTCACGAAGAGCCA
7264750 TATAACGAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 9 0.24
26 28 0.76
ACGTcount: A:0.33, C:0.25, G:0.27, T:0.15
Consensus pattern (27 bp):
AGCTCACGAAGAGCCAATTAATCGGGA
Found at i:7264765 original size:26 final size:25
Alignment explanation
Indices: 7264688--7264765 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 25
7264678 CCGGTAGCTC
7264688 CGAAGAGCCA-ATTAACGGGAAGCTCA
1 CGAAGAGCCATA-TAACGGGAA-CTCA
* *
7264714 CGAAGAGCC-TTTAATCGGGATGCTCA
1 CGAAGAGCCATATAA-CGGGA-ACTCA
*
7264740 CGAAGAGCCATATAACGAGACACTCA
1 CGAAGAGCCATATAACGGGA-ACTCA
7264766 TAAGAGCTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
25 3 0.07
26 35 0.83
27 4 0.10
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.15
Consensus pattern (25 bp):
CGAAGAGCCATATAACGGGAACTCA
Found at i:7265422 original size:27 final size:28
Alignment explanation
Indices: 7265369--7265422 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
7265359 CATTTACAGC
*
7265369 CCATGTATTTCACAAAATTTAGAATTTT
1 CCATGTATTTCACAAAATTTACAATTTT
* *
7265397 CCATGTATTTTAC-ATATTTACAATTT
1 CCATGTATTTCACAAAATTTACAATTT
7265423 AACCCCTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.46
Consensus pattern (28 bp):
CCATGTATTTCACAAAATTTACAATTTT
Found at i:7265875 original size:29 final size:29
Alignment explanation
Indices: 7265833--7265892 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
7265823 TAATAATTAT
7265833 CTACTAACTCCTCTTAATGGTCTATTTGC
1 CTACTAACTCCTCTTAATGGTCTATTTGC
*
7265862 CTACTAACTCCTCTTAGTGGTCTATTTGC
1 CTACTAACTCCTCTTAATGGTCTATTTGC
7265891 CT
1 CT
7265893 TATAAGGACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.18, C:0.28, G:0.12, T:0.42
Consensus pattern (29 bp):
CTACTAACTCCTCTTAATGGTCTATTTGC
Found at i:7269815 original size:21 final size:21
Alignment explanation
Indices: 7269759--7269815 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 21
7269749 AAAATATATG
7269759 TAAATTATAAAAATTCAAAAAAA
1 TAAATT-T-AAAATTCAAAAAAA
* * *
7269782 TAAATATATAATT-AAAAAAGT
1 TAAATTTAAAATTCAAAAAA-A
7269803 TAAATTTAAAATT
1 TAAATTTAAAATT
7269816 TTTTTTGAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 6 0.21
21 16 0.57
22 1 0.04
23 5 0.18
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
TAAATTTAAAATTCAAAAAAA
Found at i:7270831 original size:24 final size:23
Alignment explanation
Indices: 7270804--7270876 Score: 58
Period size: 24 Copynumber: 3.0 Consensus size: 23
7270794 TAAATATTTG
7270804 ATTTATTTTATATAATTTTTATAA
1 ATTTA-TTTATATAATTTTTATAA
** * *
7270828 ATTTACTAAATAAAATTTTT-TAC
1 ATTTA-TTTATATAATTTTTATAA
*
7270851 TTTTATTTATATTAATTTTTAATAA
1 ATTTATTTATA-TAATTTTT-ATAA
7270876 A
1 A
7270877 AATATTAATA
Statistics
Matches: 35, Mismatches: 11, Indels: 5
0.69 0.22 0.10
Matches are distributed among these distances:
22 4 0.11
23 13 0.37
24 16 0.46
25 2 0.06
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.58
Consensus pattern (23 bp):
ATTTATTTATATAATTTTTATAA
Found at i:7274945 original size:19 final size:20
Alignment explanation
Indices: 7274923--7274994 Score: 57
Period size: 19 Copynumber: 3.9 Consensus size: 20
7274913 AAAATTCAAA
7274923 AAAAATATATTTAAAA-T-TT
1 AAAAATATA-TTAAAATTATT
*
7274942 AAAAAT-CATTAAAATTATT
1 AAAAATATATTAAAATTATT
*
7274961 AAAAATATA--AAAAATATT
1 AAAAATATATTAAAATTATT
**
7274979 TTAAA-ATATTAAAATT
1 AAAAATATATTAAAATT
7274995 TAATTAAACG
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
17 9 0.21
18 13 0.31
19 19 0.45
20 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATATATTAAAATTATT
Found at i:7274973 original size:8 final size:9
Alignment explanation
Indices: 7274924--7274992 Score: 68
Period size: 9 Copynumber: 7.4 Consensus size: 9
7274914 AAATTCAAAA
7274924 AAAATATATT
1 AAAA-ATATT
*
7274934 TAAAAT-TT
1 AAAAATATT
7274942 AAAAATCATT
1 AAAAAT-ATT
*
7274952 AAAATTATT
1 AAAAATATT
*
7274961 AAAAATATA
1 AAAAATATT
7274970 AAAAATATTT
1 AAAAATA-TT
*
7274980 TAAAATATT
1 AAAAATATT
7274989 AAAA
1 AAAA
7274993 TTTAATTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
8 7 0.15
9 24 0.50
10 17 0.35
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (9 bp):
AAAAATATT
Found at i:7274973 original size:28 final size:27
Alignment explanation
Indices: 7274924--7274997 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 27
7274914 AAATTCAAAA
* *
7274924 AAAATATATTTAAAATTTAAAAATCA-TT
1 AAAAT-TATTAAAAATTAAAAAAT-ATTT
7274952 AAAATTATTAAAAATATAAAAAATATTTT
1 AAAATTATTAAAAAT-TAAAAAATA-TTT
*
7274981 AAAA-TATTAAAATTTAA
1 AAAATTATTAAAAATTAA
7274998 TTAAACGCTA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 13 0.32
28 21 0.52
29 6 0.15
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (27 bp):
AAAATTATTAAAAATTAAAAAATATTT
Found at i:7275380 original size:9 final size:8
Alignment explanation
Indices: 7275358--7275392 Score: 52
Period size: 9 Copynumber: 4.1 Consensus size: 8
7275348 TAATATCCTC
7275358 ATTTAAAA
1 ATTTAAAA
7275366 ATTTAAAA
1 ATTTAAAA
7275374 ATATTAAAA
1 AT-TTAAAA
7275383 ATTCTAAAA
1 ATT-TAAAA
7275392 A
1 A
7275393 GTAAAAAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 11 0.44
9 14 0.56
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (8 bp):
ATTTAAAA
Found at i:7291430 original size:20 final size:20
Alignment explanation
Indices: 7291402--7291444 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7291392 TTTCGATAAA
7291402 CAATCTCAAACATAAC-TTTT
1 CAATCTCAAACA-AACATTTT
* *
7291422 CAATTTCAAATAAACATTTT
1 CAATCTCAAACAAACATTTT
7291442 CAA
1 CAA
7291445 CTTACCTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (20 bp):
CAATCTCAAACAAACATTTT
Found at i:7296518 original size:36 final size:37
Alignment explanation
Indices: 7296478--7296580 Score: 113
Period size: 36 Copynumber: 2.8 Consensus size: 37
7296468 AAGTTCAAGC
*
7296478 CATTCGTTGGAAATATAAAATGTAAGAGATGCA-ACT
1 CATTCGTTGGAAATATAAAATGTAAGAAATGCATACT
* * *
7296514 CATTCGTTGGTAATATGAAATGT-GGAAATGCATACT
1 CATTCGTTGGAAATATAAAATGTAAGAAATGCATACT
* * *
7296550 -ATCCGTTTGACGATATAAAATGTAAGAAATG
1 CATTCGTTGGA-AATATAAAATGTAAGAAATG
7296581 AGTTTTTGAC
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
35 14 0.26
36 34 0.63
37 6 0.11
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (37 bp):
CATTCGTTGGAAATATAAAATGTAAGAAATGCATACT
Found at i:7296960 original size:50 final size:50
Alignment explanation
Indices: 7296894--7297010 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 50
7296884 TAAAGCGACT
* * * * *
7296894 CTGCTTCCAGACGCATGGTAGGAGGCTTATGGAAGGTGGTAATAAAGGCA
1 CTGCTCCCAGACGCATGGGAAGAGGCTTATGAAAGGTAGTAATAAAGGCA
* ** *
7296944 TTGCTCTTAGACGCATGGGAAGAGGCTTATGAAAGGTAGTAATAAAGGCC
1 CTGCTCCCAGACGCATGGGAAGAGGCTTATGAAAGGTAGTAATAAAGGCA
7296994 CTGCTCCCAGACGCATG
1 CTGCTCCCAGACGCATG
7297011 TGGGGAGACT
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (50 bp):
CTGCTCCCAGACGCATGGGAAGAGGCTTATGAAAGGTAGTAATAAAGGCA
Found at i:7300492 original size:281 final size:282
Alignment explanation
Indices: 7299978--7300542 Score: 1123
Period size: 281 Copynumber: 2.0 Consensus size: 282
7299968 CTATTCAAAT
7299978 TTAATAAGACAAACAAATTTAAAACATAAAATTTTAAAAGTCAAATGGATAATAGATTCTTATAT
1 TTAATAAGACAAACAAATTTAAAACATAAAATTTTAAAAGTCAAATGGATAATAGATTCTTATAT
7300043 TCAAATTTGATTCTGTAAAACTAAAATTAATTTGAATAATAAATATTTATATTCAAATCCATTAC
66 TCAAATTTGATTCTGTAAAACTAAAATTAATTTGAATAATAAATATTTATATTCAAATCCATTAC
7300108 CTACAAAAAAGAATATAAAATTTCAATAAAAAATATTTAAAGTTTAGAATCTAAATAATTTCTAA
131 CTACAAAAAAGAATATAAAATTTCAATAAAAAATATTTAAAGTTTAGAATCTAAATAATTTCTAA
7300173 TTTTCTAAAACAATAATTCAATTTATATAGATATAAAAGAAATTCACAAGCAGAAATCAGAAAAT
196 TTTTCTAAAACAATAATTCAATTTATATAGATATAAAAGAAATTCACAAGCAGAAATCAGAAAAT
7300238 GTTTTATTTATTATTATTTTAA
261 GTTTTATTTATTATTATTTTAA
7300260 TTAATAAGAC-AACAAATTTAAAACATAAAATTTTAAAAGTCAAATGGATAATAGATTCTTATAT
1 TTAATAAGACAAACAAATTTAAAACATAAAATTTTAAAAGTCAAATGGATAATAGATTCTTATAT
7300324 TCAAATTTGATTCTGTAAAACTAAAATTAATTTGAATAATAAATATTTATATTCAAATCCATTAC
66 TCAAATTTGATTCTGTAAAACTAAAATTAATTTGAATAATAAATATTTATATTCAAATCCATTAC
7300389 CTACAAAAAAGAATATAAAATTTCAATAAAAAATATTTAAAGTTTAGAATCTAAATAATTTCTAA
131 CTACAAAAAAGAATATAAAATTTCAATAAAAAATATTTAAAGTTTAGAATCTAAATAATTTCTAA
7300454 TTTTCTAAAACAATAATTCAATTTATATAGATATAAAAGAAATTCACAAGCAGAAATCAGAAAAT
196 TTTTCTAAAACAATAATTCAATTTATATAGATATAAAAGAAATTCACAAGCAGAAATCAGAAAAT
7300519 GTTTTATTTATTATTATTTTAA
261 GTTTTATTTATTATTATTTTAA
7300541 TT
1 TT
7300543 TTATAAACAG
Statistics
Matches: 283, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
281 273 0.96
282 10 0.04
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.36
Consensus pattern (282 bp):
TTAATAAGACAAACAAATTTAAAACATAAAATTTTAAAAGTCAAATGGATAATAGATTCTTATAT
TCAAATTTGATTCTGTAAAACTAAAATTAATTTGAATAATAAATATTTATATTCAAATCCATTAC
CTACAAAAAAGAATATAAAATTTCAATAAAAAATATTTAAAGTTTAGAATCTAAATAATTTCTAA
TTTTCTAAAACAATAATTCAATTTATATAGATATAAAAGAAATTCACAAGCAGAAATCAGAAAAT
GTTTTATTTATTATTATTTTAA
Found at i:7310355 original size:20 final size:21
Alignment explanation
Indices: 7310325--7310365 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
7310315 GCAAGCTTTG
7310325 ATGGAAAAAAACTAACCTGCA
1 ATGGAAAAAAACTAACCTGCA
7310346 ATGG-AAAAAACTAACCTGCA
1 ATGGAAAAAAACTAACCTGCA
7310366 GGTGTTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.51, C:0.20, G:0.15, T:0.15
Consensus pattern (21 bp):
ATGGAAAAAAACTAACCTGCA
Found at i:7310630 original size:31 final size:31
Alignment explanation
Indices: 7310593--7310666 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
7310583 ATATTTTATA
7310593 TATCATTATATTAAATTACTTAAATATCATT
1 TATCATTATATTAAATTACTTAAATATCATT
* * *
7310624 TATCATTATATTAAATTATTTAAATCTTATT
1 TATCATTATATTAAATTACTTAAATATCATT
*
7310655 TATTATTATATT
1 TATCATTATATT
7310667 TATTTTTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (31 bp):
TATCATTATATTAAATTACTTAAATATCATT
Found at i:7315633 original size:11 final size:11
Alignment explanation
Indices: 7315617--7315677 Score: 70
Period size: 11 Copynumber: 5.5 Consensus size: 11
7315607 ATTAATCATT
*
7315617 TCTCAATTTTC
1 TCTCAATTTCC
7315628 TCTCAATTTCC
1 TCTCAATTTCC
* *
7315639 TCTCAAATTGC
1 TCTCAATTTCC
7315650 TCTCAATTTCC
1 TCTCAATTTCC
*
7315661 TTCTAAATTT-C
1 -TCTCAATTTCC
7315672 TCTCAA
1 TCTCAA
7315678 ATCCATATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
10 5 0.12
11 29 0.69
12 8 0.19
ACGTcount: A:0.23, C:0.30, G:0.02, T:0.46
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:7315643 original size:22 final size:22
Alignment explanation
Indices: 7315617--7315677 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
7315607 ATTAATCATT
*
7315617 TCTCAATTTTCTCTCAATTTCC
1 TCTCAAATTTCTCTCAATTTCC
*
7315639 TCTCAAATTGCTCTCAATTTCC
1 TCTCAAATTTCTCTCAATTTCC
7315661 T-TCTAAATTTCTCTCAA
1 TCTC-AAATTTCTCTCAA
7315678 ATCCATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
21 2 0.06
22 33 0.94
ACGTcount: A:0.23, C:0.30, G:0.02, T:0.46
Consensus pattern (22 bp):
TCTCAAATTTCTCTCAATTTCC
Found at i:7315675 original size:33 final size:33
Alignment explanation
Indices: 7315617--7315679 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
7315607 ATTAATCATT
* *
7315617 TCTCAATTTTCTCTCAATTTCCTCTCAAATTGC
1 TCTCAATTTCCTCTAAATTTCCTCTCAAATTGC
7315650 TCTCAATTTCCTTCTAAATTT-CTCTCAAAT
1 TCTCAATTTCC-TCTAAATTTCCTCTCAAAT
7315680 CCATATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 19 0.70
34 8 0.30
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.46
Consensus pattern (33 bp):
TCTCAATTTCCTCTAAATTTCCTCTCAAATTGC
Found at i:7315754 original size:13 final size:12
Alignment explanation
Indices: 7315735--7315769 Score: 61
Period size: 13 Copynumber: 2.8 Consensus size: 12
7315725 TTTCTAATTT
7315735 TTTTTTTAAAAA
1 TTTTTTTAAAAA
7315747 TATTTTTTAAAAA
1 T-TTTTTTAAAAA
7315760 TTTTTTTAAA
1 TTTTTTTAAA
7315770 TCGTAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTTTAAAAA
Found at i:7317549 original size:18 final size:18
Alignment explanation
Indices: 7317526--7317568 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7317516 TGTCAGGTGC
* *
7317526 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
7317544 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
7317562 GTTTCCT
1 GTATCCT
7317569 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:7319565 original size:124 final size:122
Alignment explanation
Indices: 7319202--7319609 Score: 597
Period size: 121 Copynumber: 3.3 Consensus size: 122
7319192 GCCAAACATG
* * *
7319202 CTACTGTAGCAAAAGCGCGTTCACGTAAGAGCGATTTCAAAAATTCTTCTGATAAAGTATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCGATTTC-AAAATTCTTCTGATAAAGCATCCTGC
* * *
7319267 TTGAAGCGTTTTTATACTATTTGCTCAAAAACGTCAACTCAAAATTATTTTTTCAGGAC
65 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTA-TTTTTCAGGAC
*
7319326 CTACTGTAGCAAAAGCGC--CCACATG-GAAGCGATTTCAAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGAG-AGCGATTTCAAAATTCTTCTGATAAAGCATCCTGC
*
7319388 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTTAACTCGAAATTATGTTTTCAGGAC
65 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTAT-TTTTCAGGAC
*
7319447 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCGATTTCAGAAATTCTTCTTATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCGATTTCA-AAATTCTTCTGATAAAGCATCCTGC
*
7319512 TTGAAGCGTTTTTTATACTATTTGCTTAGAAACGTAAACTCGAAATTATTTTTCCAGGAC
65 TTGAAGCG-TTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTT-CAGGAC
* * * * *
7319572 CTATTGTATCAAAAACGCGTCCACGTGGGAGCAATTTC
1 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCGATTTC
7319610 CTTAATAAAT
Statistics
Matches: 260, Mismatches: 16, Indels: 15
0.89 0.05 0.05
Matches are distributed among these distances:
120 1 0.00
121 98 0.38
122 13 0.05
123 16 0.06
124 55 0.21
125 77 0.30
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (122 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCGATTTCAAAATTCTTCTGATAAAGCATCCTGCT
TGAAGCGTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTCAGGAC
Found at i:7324321 original size:95 final size:96
Alignment explanation
Indices: 7324197--7324394 Score: 382
Period size: 95 Copynumber: 2.1 Consensus size: 96
7324187 TATTTTTATT
7324197 TTATATTTATAGATGTTCTGATACTTAAGAGAGAACAATTAGGTTAATTAATTAGTTTGGTTGTT
1 TTATATTTATAGATGTTCTGATACTTAAGAGAGAACAATTAGGTTAATTAATTAGTTTGGTTGTT
7324262 GATTTTTTAAACCGACTTTAACATGAAAAAA
66 GATTTTTTAAACCGACTTTAACATGAAAAAA
7324293 TTATATTTATAG-TGTTCTGATACTTAAGAGAGAACAATTAGGTTAATTAATTAGTTTGGTTGTT
1 TTATATTTATAGATGTTCTGATACTTAAGAGAGAACAATTAGGTTAATTAATTAGTTTGGTTGTT
7324357 GATTTTTTAAACCGACTTTAACATGAAAAAA
66 GATTTTTTAAACCGACTTTAACATGAAAAAA
7324388 TTA-ATTT
1 TTATATTT
7324395 GACCAACTTT
Statistics
Matches: 102, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
94 4 0.04
95 86 0.84
96 12 0.12
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (96 bp):
TTATATTTATAGATGTTCTGATACTTAAGAGAGAACAATTAGGTTAATTAATTAGTTTGGTTGTT
GATTTTTTAAACCGACTTTAACATGAAAAAA
Found at i:7324782 original size:11 final size:10
Alignment explanation
Indices: 7324762--7324788 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7324752 TGTTGATTAT
7324762 AAAAACAAAA
1 AAAAACAAAA
7324772 AAAAACAAAA
1 AAAAACAAAA
7324782 AAAAACA
1 AAAAACA
7324789 CTTGTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:7325278 original size:15 final size:16
Alignment explanation
Indices: 7325260--7325294 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
7325250 TTTTATTTTT
*
7325260 ATTTGGGTTTAATT-G
1 ATTTAGGTTTAATTAG
7325275 ATTTAGGTTTAATTAG
1 ATTTAGGTTTAATTAG
7325291 ATTT
1 ATTT
7325295 TATGAGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (16 bp):
ATTTAGGTTTAATTAG
Found at i:7332476 original size:14 final size:16
Alignment explanation
Indices: 7332457--7332494 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
7332447 AAATTAGGTT
7332457 CTAAATTTT-TAA-TA
1 CTAAATTTTATAAGTA
*
7332471 CTAAATTTTATAAGTG
1 CTAAATTTTATAAGTA
7332487 CTAAATTT
1 CTAAATTT
7332495 ATCTTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
15 3 0.14
16 9 0.43
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (16 bp):
CTAAATTTTATAAGTA
Found at i:7332588 original size:19 final size:18
Alignment explanation
Indices: 7332564--7332605 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7332554 TATTGTTTGA
7332564 TAAAAATAAATACTTATTT
1 TAAAAAT-AATACTTATTT
* *
7332583 TAAAAATATTATTTATTT
1 TAAAAATAATACTTATTT
7332601 TAAAA
1 TAAAA
7332606 TTTTATCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAAAATAATACTTATTT
Found at i:7332616 original size:18 final size:19
Alignment explanation
Indices: 7332576--7332617 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
7332566 AAAATAAATA
7332576 CTTATTTTAAAAATATTAT
1 CTTATTTTAAAAATATTAT
*
7332595 -TTATTTT-AAAATTTTAT
1 CTTATTTTAAAAATATTAT
7332612 CTTATT
1 CTTATT
7332618 AATCTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
CTTATTTTAAAAATATTAT
Found at i:7334311 original size:22 final size:22
Alignment explanation
Indices: 7334267--7334335 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
7334257 TATGCACTAT
* *
7334267 TAAACAAAGAGCACTAAAT-TGC
1 TAAACAGAGAGCAC-GAATGTGC
*
7334289 TATACAGAGAGCACGAATGTGC
1 TAAACAGAGAGCACGAATGTGC
** *
7334311 TAAATGGAGAGCACTAATGTGC
1 TAAACAGAGAGCACGAATGTGC
7334333 TAA
1 TAA
7334336 TAATCAGAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 3 0.08
22 36 0.92
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (22 bp):
TAAACAGAGAGCACGAATGTGC
Found at i:7335431 original size:23 final size:24
Alignment explanation
Indices: 7335401--7335457 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 24
7335391 GCTGTGCTAG
7335401 TGTTCCTCTGCT-TACTGGTTCTT
1 TGTTCCTCTGCTGTACTGGTTCTT
* *
7335424 TGTTCCTCTGCTGGTGCTTGTTCTT
1 TGTTCCTCTGCT-GTACTGGTTCTT
7335449 TGTTCCTCT
1 TGTTCCTCT
7335458 TCTCCACTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 12 0.40
25 18 0.60
ACGTcount: A:0.02, C:0.26, G:0.19, T:0.53
Consensus pattern (24 bp):
TGTTCCTCTGCTGTACTGGTTCTT
Found at i:7337311 original size:18 final size:18
Alignment explanation
Indices: 7337267--7337314 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
7337257 TAAATATGAG
* *
7337267 AAATGATGCTCACATTTT
1 AAATGATGTTCACATTTC
7337285 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
7337303 AAATGATGTTCA
1 AAATGATGTTCA
7337315 AATTGATGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:7337928 original size:253 final size:253
Alignment explanation
Indices: 7337480--7337990 Score: 905
Period size: 253 Copynumber: 2.0 Consensus size: 253
7337470 AGTCAAAGTG
* * *
7337480 CTTGACAGCATGTCGGAAGAAGTTTCAGAAGCTAGTTCGCTATACTTTTTCGCACTTAAATTATT
1 CTTGACAGCATGTCGGAAGAAGTTCCAGAAGCTAGTCCGCTATACTTTTTCGCACTTAAATTACT
*
7337545 GCTCAATAAGGACAAGCGAATTATGTTTTTATCAATTAATCCCAAGATTAGAGCTTTATGGCTTA
66 GCTCAATAAGGACAAACGAATTATGTTTTTATCAATTAATCCCAAGATTAGAGCTTTATGGCTTA
* *
7337610 AGACGGAAATGGAGGATAGTTGAAAATTTTCTGATCTTCTAGGGTTCAAAGATATCTATTATGTG
131 AGACAGAAATGGAGGATAGTTGAAAATTTTCTGATCTTCTAGGGTGCAAAGATATCTATTATGTG
*
7337675 ACTAGCTGACAATGCTAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGAT
196 ACTAGCTGACAATGCTAAACTAATTTTATCAATAGTTATTTATGTTTGGTTTTTGGAT
7337733 CTTGACAGCATGTCGGAAGAAGTTCCAGAAGCTAGTCCGCTATACTTTTTCGCACTTAAATTACT
1 CTTGACAGCATGTCGGAAGAAGTTCCAGAAGCTAGTCCGCTATACTTTTTCGCACTTAAATTACT
* *
7337798 GCTCAATAAGGACAAACGAATTATGTTTTTATCAATTAATCCCGAGATTAGAGCTTTGTGGCTTA
66 GCTCAATAAGGACAAACGAATTATGTTTTTATCAATTAATCCCAAGATTAGAGCTTTATGGCTTA
*
7337863 AGACAGAAATGGAGGATAGTTGAAAATTTTCTGATCTTCTGGGGTGCAAAGATATCTATTATGTG
131 AGACAGAAATGGAGGATAGTTGAAAATTTTCTGATCTTCTAGGGTGCAAAGATATCTATTATGTG
* *
7337928 AGTAGCTGACAGTGCTAAACTAATTTTATCAATAGTTATTTATGTTTGGTTTTTGGAT
196 ACTAGCTGACAATGCTAAACTAATTTTATCAATAGTTATTTATGTTTGGTTTTTGGAT
*
7337986 ATTGA
1 CTTGA
7337991 ATTTATGTTC
Statistics
Matches: 245, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
253 245 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (253 bp):
CTTGACAGCATGTCGGAAGAAGTTCCAGAAGCTAGTCCGCTATACTTTTTCGCACTTAAATTACT
GCTCAATAAGGACAAACGAATTATGTTTTTATCAATTAATCCCAAGATTAGAGCTTTATGGCTTA
AGACAGAAATGGAGGATAGTTGAAAATTTTCTGATCTTCTAGGGTGCAAAGATATCTATTATGTG
ACTAGCTGACAATGCTAAACTAATTTTATCAATAGTTATTTATGTTTGGTTTTTGGAT
Found at i:7338042 original size:72 final size:71
Alignment explanation
Indices: 7337951--7338113 Score: 247
Period size: 72 Copynumber: 2.3 Consensus size: 71
7337941 GCTAAACTAA
* * * *
7337951 TTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTATGTGT
1 TTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTTATTTATAT-T
7338016 -AATCTAG
65 AAAT-TAG
* *
7338023 TTTTATTAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTTATTTTTATTA
1 TTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTTATTTATATTA
7338088 AATTAG
66 AATTAG
7338094 TTTTATCAATAGTTGTTTAT
1 TTTTATCAATAGTTGTTTAT
7338114 ATATGATTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 23 0.28
72 60 0.72
ACGTcount: A:0.25, C:0.05, G:0.13, T:0.57
Consensus pattern (71 bp):
TTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTTATTTATATTA
AATTAG
Found at i:7339891 original size:30 final size:28
Alignment explanation
Indices: 7339851--7339916 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 28
7339841 TTAAATTTAA
7339851 TAAATAATTAATATTA-ATTACTTAGAAATAT
1 TAAA-AATTAATATTATA-TA-TTA-AAATAT
*
7339882 TTAAAATTAATATTATATATTAAAATAT
1 TAAAAATTAATATTATATATTAAAATAT
7339910 TAAAAAT
1 TAAAAAT
7339917 AAGTTATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 12 0.38
29 3 0.09
30 13 0.41
31 4 0.12
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (28 bp):
TAAAAATTAATATTATATATTAAAATAT
Found at i:7339915 original size:28 final size:30
Alignment explanation
Indices: 7339851--7339916 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 30
7339841 TTAAATTTAA
7339851 TAAATAATTAATATTAATTACTTAGAAATAT
1 TAAA-AATTAATATTAATTACTTAGAAATAT
*
7339882 TTAAAATTAATATT-ATATA-TTA-AAATAT
1 TAAAAATTAATATTAAT-TACTTAGAAATAT
7339910 TAAAAAT
1 TAAAAAT
7339917 AAGTTATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 12 0.38
29 5 0.16
30 12 0.38
31 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (30 bp):
TAAAAATTAATATTAATTACTTAGAAATAT
Found at i:7340100 original size:13 final size:13
Alignment explanation
Indices: 7340082--7340142 Score: 59
Period size: 13 Copynumber: 4.7 Consensus size: 13
7340072 CTCAAAATTT
*
7340082 TCAAAAGTACTTC
1 TCAAAAGCACTTC
*
7340095 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* * *
7340108 TCCACAGCACTTT
1 TCAAAAGCACTTC
*
7340121 TCAAAAGCACTTT
1 TCAAAAGCACTTC
*
7340134 TTAAAAGCA
1 TCAAAAGCA
7340143 ATGAAGAACT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.30
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:7340108 original size:26 final size:26
Alignment explanation
Indices: 7340079--7340142 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
7340069 ACACTCAAAA
*
7340079 TTTTCAAAAGTACTTCTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
* * *
7340105 TTTTCCACAGCACTTTTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
*
7340131 TTTTTAAAAGCA
1 TTTTCAAAAGCA
7340143 ATGAAGAACT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:7343746 original size:25 final size:26
Alignment explanation
Indices: 7343718--7343788 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
7343708 CCAGATATAT
*
7343718 GGCTCTTCGA-AGCTTCCCAATTAAA
1 GGCTCTTCAAGAGCTTCCCAATTAAA
* *
7343743 GGCTCTTTAATGAGCTTCCCAATTAATT
1 GGCTCTTCAA-GAGCTTCCCAATTAA-A
*
7343771 GGCTC-TCCAGAGCTTCCC
1 GGCTCTTCAAGAGCTTCCC
7343789 GATATTGGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
25 8 0.21
26 9 0.24
27 16 0.42
28 5 0.13
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.31
Consensus pattern (26 bp):
GGCTCTTCAAGAGCTTCCCAATTAAA
Found at i:7344810 original size:191 final size:191
Alignment explanation
Indices: 7344486--7344861 Score: 707
Period size: 191 Copynumber: 2.0 Consensus size: 191
7344476 AAGTCATTAC
*
7344486 ATATATATATCACATATCCAATTAAATAAATCATGAATCATTCACGAACCAAGTAGCCATAGTTC
1 ATATATATATCACATATCCAATTAAATAAATCATGAATCATTCACGAACCAAGTAGCCATAATTC
*
7344551 ACTCAATTACATAAACCAAATTCGCATTACAAACCATGCTCTGAAACTCAACCAAGTCATTACCA
66 ACTCAATCACATAAACCAAATTCGCATTACAAACCATGCTCTGAAACTCAACCAAGTCATTACCA
* *
7344616 TTTACTTATTCAAATATTCGTACCAACTAATATATATCCATATCATGTTTTTTATATATAT
131 TTTACTTATTCAAATATTCGTACCAACTAATAAATATCCATATCATGTTTCTTATATATAT
7344677 ATATATATATCACATATCCAATTAAATAAATCATGAATCATTCACGAACCAAGTAGCCATAATTC
1 ATATATATATCACATATCCAATTAAATAAATCATGAATCATTCACGAACCAAGTAGCCATAATTC
7344742 ACTCAATCACATAAACCAAATTCGCATTACAAACCATGCTCTGAAACTCAACCAAGTCATTACCA
66 ACTCAATCACATAAACCAAATTCGCATTACAAACCATGCTCTGAAACTCAACCAAGTCATTACCA
*
7344807 TTTACTTATTCAAATATTCGTACCAACTAATAAATATCCATATCTTGTTTCTTAT
131 TTTACTTATTCAAATATTCGTACCAACTAATAAATATCCATATCATGTTTCTTAT
7344862 GCTTCATAAA
Statistics
Matches: 180, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
191 180 1.00
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.32
Consensus pattern (191 bp):
ATATATATATCACATATCCAATTAAATAAATCATGAATCATTCACGAACCAAGTAGCCATAATTC
ACTCAATCACATAAACCAAATTCGCATTACAAACCATGCTCTGAAACTCAACCAAGTCATTACCA
TTTACTTATTCAAATATTCGTACCAACTAATAAATATCCATATCATGTTTCTTATATATAT
Found at i:7351461 original size:16 final size:16
Alignment explanation
Indices: 7351440--7351470 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7351430 TTTTTCTTAA
*
7351440 ATTAATTATAATATAC
1 ATTAATTACAATATAC
7351456 ATTAATTACAATATA
1 ATTAATTACAATATA
7351471 TTCAATAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTAATTACAATATAC
Found at i:7353156 original size:6 final size:6
Alignment explanation
Indices: 7353147--7353174 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7353137 TGTGTGAGTC
7353147 GTGAGA GTGAGA GTGAGA GTGAGA GTGA
1 GTGAGA GTGAGA GTGAGA GTGAGA GTGA
7353175 ATGAAAGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.50, T:0.18
Consensus pattern (6 bp):
GTGAGA
Found at i:7353319 original size:16 final size:17
Alignment explanation
Indices: 7353298--7353338 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
7353288 GCCTAAGAGA
7353298 AAATTGGGCT-GGATTT
1 AAATTGGGCTGGGATTT
*
7353314 AAATTGGGCTGGGTTTT
1 AAATTGGGCTGGGATTT
7353331 AAATTGGG
1 AAATTGGG
7353339 AGGGAGTAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.24, C:0.05, G:0.34, T:0.37
Consensus pattern (17 bp):
AAATTGGGCTGGGATTT
Found at i:7356992 original size:44 final size:43
Alignment explanation
Indices: 7356891--7357016 Score: 125
Period size: 41 Copynumber: 2.9 Consensus size: 43
7356881 GTAATCAAAT
* *
7356891 ATCGATGCCACTGTCCCAGACAAGGTCTTACACG--AATCGTAT
1 ATCGATGCCAC-GTCCCAGACATGGTCTTACACGTAAATCGTAA
* *
7356933 A-CGATGCCGATGTCCCAAACATGGTCTTACACGTAAATC-TCAA
1 ATCGATGCC-ACGTCCCAGACATGGTCTTACACGTAAATCGT-AA
* *
7356976 ATCGATGCCAACGTCCCAGACGTGGTCTTAAACGATAAATC
1 ATCGATGCC-ACGTCCCAGACATGGTCTTACACG-TAAATC
7357017 ATATTGGAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
41 27 0.39
42 3 0.04
43 6 0.09
44 27 0.39
45 6 0.09
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (43 bp):
ATCGATGCCACGTCCCAGACATGGTCTTACACGTAAATCGTAA
Found at i:7364979 original size:15 final size:15
Alignment explanation
Indices: 7364959--7364990 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7364949 GTAAAAATAA
*
7364959 AAGTAGACTCTAGAT
1 AAGTAGACTCAAGAT
7364974 AAGTAGACTCAAGAT
1 AAGTAGACTCAAGAT
7364989 AA
1 AA
7364991 CCAAAGAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.22
Consensus pattern (15 bp):
AAGTAGACTCAAGAT
Found at i:7370674 original size:23 final size:23
Alignment explanation
Indices: 7370630--7370674 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
7370620 ACAATTTTAA
7370630 TTTTTTAATATTTAAAATAATAT
1 TTTTTTAATATTTAAAATAATAT
*
7370653 TTTTTGTAATTTTTAAAA-AATA
1 TTTTT-TAATATTTAAAATAATA
7370675 CATTAATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTTTTAATATTTAAAATAATAT
Found at i:7383187 original size:29 final size:29
Alignment explanation
Indices: 7383127--7383188 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
7383117 ACTTTTAATT
*
7383127 TTTTTATATTTTCTAAATATTCTTAATCA
1 TTTTTATATTTTCTAAATATTCTTAATAA
* * *
7383156 TTTTTAT-TTTTTTAAAATATTTTTTATAA
1 TTTTTATATTTTCT-AAATATTCTTAATAA
7383185 TTTT
1 TTTT
7383189 AAAAATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.18
29 23 0.82
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (29 bp):
TTTTTATATTTTCTAAATATTCTTAATAA
Found at i:7385858 original size:40 final size:40
Alignment explanation
Indices: 7385799--7386017 Score: 216
Period size: 38 Copynumber: 5.5 Consensus size: 40
7385789 AACACACCAG
* *
7385799 ATTGGCACCCAGTGCCTCATCGGATAATTCAAAGTATTAA
1 ATTGACACCCAGTGTCTCATCGGATAATTCAAAGTATTAA
* * * *
7385839 ATTGACACCTAGTGTCTCATCGGTTAAAATCGAAG---TAA
1 ATTGACACCCAGTGTCTCATCGGAT-AATTCAAAGTATTAA
*
7385877 ATTGACACCCAGTGCCTCATCGGATAATTCAAAGTATTAA
1 ATTGACACCCAGTGTCTCATCGGATAATTCAAAGTATTAA
* * * * * *
7385917 ATTGACACCTATTGTCTCATCGGTTAA---AACCGAAGTAA
1 ATTGACACCCAGTGTCTCATCGGATAATTCAA-AGTATTAA
* * *
7385955 ATTGACACCCAGTGTCTCATCGAATAAATTCGAAGTAATAA
1 ATTGACACCCAGTGTCTCATCGGAT-AATTCAAAGTATTAA
*
7385996 ATTGGCACCCAGTGTCTCATCG
1 ATTGACACCCAGTGTCTCATCG
7386018 ACTCAAAGTC
Statistics
Matches: 143, Mismatches: 27, Indels: 17
0.76 0.14 0.09
Matches are distributed among these distances:
37 9 0.06
38 51 0.36
39 2 0.01
40 47 0.33
41 33 0.23
42 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (40 bp):
ATTGACACCCAGTGTCTCATCGGATAATTCAAAGTATTAA
Found at i:7385933 original size:78 final size:78
Alignment explanation
Indices: 7385799--7386017 Score: 348
Period size: 78 Copynumber: 2.8 Consensus size: 78
7385789 AACACACCAG
*
7385799 ATTGGCACCCAGTGCCTCATCGGATAATTCAAAGTATTAAATTGACACCTAGTGTCTCATCGGTT
1 ATTGACACCCAGTGCCTCATCGGATAATTCAAAGTATTAAATTGACACCTAGTGTCTCATCGGTT
*
7385864 AAAATCGAAGTAA
66 AAAACCGAAGTAA
*
7385877 ATTGACACCCAGTGCCTCATCGGATAATTCAAAGTATTAAATTGACACCTATTGTCTCATCGGTT
1 ATTGACACCCAGTGCCTCATCGGATAATTCAAAGTATTAAATTGACACCTAGTGTCTCATCGGTT
7385942 AAAACCGAAGTAA
66 AAAACCGAAGTAA
* * * * * *
7385955 ATTGACACCCAGTGTCTCATCGAATAAATTCGAAGTAATAAATTGGCACCCAGTGTCTCATCG
1 ATTGACACCCAGTGCCTCATCGGAT-AATTCAAAGTATTAAATTGACACCTAGTGTCTCATCG
7386018 ACTCAAAGTC
Statistics
Matches: 130, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
78 98 0.75
79 32 0.25
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (78 bp):
ATTGACACCCAGTGCCTCATCGGATAATTCAAAGTATTAAATTGACACCTAGTGTCTCATCGGTT
AAAACCGAAGTAA
Found at i:7389811 original size:19 final size:17
Alignment explanation
Indices: 7389767--7389815 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
7389757 AAATACTATC
7389767 AAAATAAGTATTAAATTT
1 AAAATAA-TATTAAATTT
**
7389785 AATTTAATATTAAATTTTT
1 AAAATAATATTAAA--TTT
7389804 AAAATAATATTA
1 AAAATAATATTA
7389816 TTTTTGGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 7 0.28
18 5 0.20
19 13 0.52
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
AAAATAATATTAAATTT
Found at i:7392175 original size:34 final size:34
Alignment explanation
Indices: 7392135--7392199 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
7392125 TATATGTTTA
* * *
7392135 AATCGATTGTCATGTTGGAATATTGTTTCTTTTG
1 AATCGATTGTCATGGTGGAATACTGCTTCTTTTG
*
7392169 AATCGATTGTTATGGTGGAATACTGCTTCTT
1 AATCGATTGTCATGGTGGAATACTGCTTCTT
7392200 CTTCTTTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (34 bp):
AATCGATTGTCATGGTGGAATACTGCTTCTTTTG
Found at i:7392178 original size:55 final size:55
Alignment explanation
Indices: 7392051--7392377 Score: 182
Period size: 55 Copynumber: 5.7 Consensus size: 55
7392041 AAAATATTAC
* * * ** * *
7392051 TTCTTTTGGATCGATTATTTTTATGTTTAAATCGATTGTTTTGTTGGAATACTGG
1 TTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATATTGT
**
7392106 TTCTTTTGAATAAATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATATTGT
1 TTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATATTGT
* ** * * * * *
7392161 TTCTTTTGAATCGATTG--T-TATGGTGGAATACTGCTTCTTCTTCTT-TATATCAATTGTT
1 TTCTTTTGAATCGATTGTTTATATGTTTAAAT-C-GATT-GTCATGTTGGA-AT--ATTG-T
* * * * *
7392219 TATATGTTTAAATCGATTGTTATGTTGGAATACTACTTTTGAATCTATTGTCATGTTGGAATA-T
1 T-TCT-TTTGAATCGATTG---T-TT---ATA-T--GTTTAAATCGATTGTCATGTTGGAATATT
7392283 GAT
54 G-T
* * *
7392286 TTCTTTTGAATCGATTG-TT-TATGTTTAAATCGATTGTTATGTTGAAATATTGC
1 TTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATATTGT
* *
7392339 TTCTTTTGAACCGATTGTTTATGTGTTTAAATCGATTGT
1 TTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGT
7392378 TACATAACAT
Statistics
Matches: 205, Mismatches: 41, Indels: 52
0.69 0.14 0.17
Matches are distributed among these distances:
52 8 0.04
53 40 0.20
54 8 0.04
55 86 0.42
56 2 0.01
57 4 0.02
58 2 0.01
59 2 0.01
60 14 0.07
65 12 0.06
66 3 0.01
67 4 0.02
68 1 0.00
70 9 0.04
71 4 0.02
72 1 0.00
73 5 0.02
ACGTcount: A:0.24, C:0.09, G:0.17, T:0.50
Consensus pattern (55 bp):
TTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATATTGT
Found at i:7392345 original size:53 final size:54
Alignment explanation
Indices: 7392260--7392379 Score: 163
Period size: 53 Copynumber: 2.2 Consensus size: 54
7392250 ACTACTTTTG
* * * * *
7392260 AATCTATTGTCATGTTGGAATATGATTTCTTTTGAATCGATTGTTTA-TGTTTA
1 AATCGATTGTTATGTTGAAATATGACTTCTTTTGAACCGATTGTTTAGTGTTTA
7392313 AATCGATTGTTATGTTGAAATATTG-CTTCTTTTGAACCGATTGTTTATGTGTTTA
1 AATCGATTGTTATGTTGAAATA-TGACTTCTTTTGAACCGATTGTTTA-GTGTTTA
7392368 AATCGATTGTTA
1 AATCGATTGTTA
7392380 CATAACATGT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
53 39 0.66
54 2 0.03
55 18 0.31
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.49
Consensus pattern (54 bp):
AATCGATTGTTATGTTGAAATATGACTTCTTTTGAACCGATTGTTTAGTGTTTA
Found at i:7400455 original size:16 final size:17
Alignment explanation
Indices: 7400420--7400452 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7400410 AGGACAATAA
*
7400420 AAAATTTTGAGATTTTT
1 AAAATTTCGAGATTTTT
7400437 AAAATTTCGAGATTTT
1 AAAATTTCGAGATTTT
7400453 AAATTTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (17 bp):
AAAATTTCGAGATTTTT
Found at i:7402062 original size:23 final size:24
Alignment explanation
Indices: 7402035--7402094 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 24
7402025 TTTAATGTTC
**
7402035 ACGAATATGTTCATTTAAC-TTAA
1 ACGAATATGTTCATCAAACATTAA
* *
7402058 TCGAACATGTTCA-CAAACATTAA
1 ACGAATATGTTCATCAAACATTAA
7402081 ACGAATATGTTCAT
1 ACGAATATGTTCAT
7402095 GAACATATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
22 3 0.10
23 26 0.90
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (24 bp):
ACGAATATGTTCATCAAACATTAA
Found at i:7402116 original size:24 final size:23
Alignment explanation
Indices: 7402054--7402123 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
7402044 TTCATTTAAC
*
7402054 TTAATCGAACATGTTCACAAACA
1 TTAATCGAACATGTTCACGAACA
* * *
7402077 TTAAACGAATATGTTCATGAACA
1 TTAATCGAACATGTTCACGAACA
*
7402100 TATAATTGAACATGTTCACGAACA
1 T-TAATCGAACATGTTCACGAACA
7402124 ATGTTAATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
23 20 0.53
24 18 0.47
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (23 bp):
TTAATCGAACATGTTCACGAACA
Found at i:7404591 original size:19 final size:18
Alignment explanation
Indices: 7404548--7404583 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7404538 ACGTTTAAGG
7404548 ATTTTTTTTTTCAAAAAA
1 ATTTTTTTTTTCAAAAAA
*
7404566 ATGTTTTTTTTTTAAAAA
1 AT-TTTTTTTTTCAAAAA
7404584 CACTTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 2 0.12
19 14 0.88
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (18 bp):
ATTTTTTTTTTCAAAAAA
Found at i:7410771 original size:14 final size:14
Alignment explanation
Indices: 7410752--7410782 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
7410742 AATGTAATGA
7410752 CTATATTATCCAAC
1 CTATATTATCCAAC
7410766 CTATATTATCCAAC
1 CTATATTATCCAAC
7410780 CTA
1 CTA
7410783 AAACCAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (14 bp):
CTATATTATCCAAC
Found at i:7417081 original size:31 final size:29
Alignment explanation
Indices: 7417046--7417112 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
7417036 ATACCAAAAT
*
7417046 TATACATCAACTATGGTTTAATGTGCAATTG
1 TATACATCAACTATGATTT--TGTGCAATTG
* * *
7417077 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATCAACTATGATTTTGTGCAATTG
7417106 TATACAT
1 TATACAT
7417113 GAAATTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.43
Consensus pattern (29 bp):
TATACATCAACTATGATTTTGTGCAATTG
Found at i:7417099 original size:29 final size:30
Alignment explanation
Indices: 7417067--7417125 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
7417057 TATGGTTTAA
7417067 TGTGCAATTGTATACATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
7417096 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
7417126 GATCTAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.29, C:0.08, G:0.15, T:0.47
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:7425780 original size:394 final size:399
Alignment explanation
Indices: 7424866--7425901 Score: 1230
Period size: 394 Copynumber: 2.6 Consensus size: 399
7424856 GAGTAAAGGT
* * * * * **
7424866 TATTACCTTTTAATATATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACTT
1 TATTAACTTTTAGTAGATAGCTAAAAATGGTAATTACAGATCATTTATCAAACGACACTCAACCC
* * * *
7424931 AATCCGCGTTGGCTACCATTATTGATGTTATTTTTATTTAGTTAAAGCATGTTATTAGTTGTTTC
66 AATCCGCGTTCGCTACCATTATTGATGTTATTTTTACTTAGTTAAAACATGTTATTAGTAGTTTC
* **
7424996 ATTCGTTATTATAAAAACATATATATATGTTATTGAACCTTATACATAGATAAGATTTAAAATTT
131 TTTCGTTATTAT--AAA-A-A-A-ATATGTTATTG-GTCTTATA-ATAG--AAGATTTAAAATTT
* * ** *
7425061 AGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTTGCTTTTTTAGTTTAAAAATCACAGCCC
186 AGTCTATATACTTAAATGACTAAAACATAAGCCCTCTCGCTTTCCTAGTCTAAAAATCACAGCCC
* *
7425126 CATCAGTAAAATTACAAGCATTTTCATCAAAATTTACAAACTTGACATGTTAATTAAATTACTCT
251 CATCACTAAAATTACAAGCATTTTCATCAAAATTTACAAACTTGACATGTTAATTAAATTACACT
** *
7425191 CACCCGAGGTTGACCATAATTGAACTCTTACATGAAGAAAAACTATGATATAATATTAACATTAT
316 CAAACGAGGTTGACCACAATTGAACTCTTACATGAAGAAAAACTATGATATAATATTAACATTAT
*
7425256 GGTAGTCTAGAATAACGAC
381 GGTAGTCTAGAATAACAAC
* * *
7425275 TATTAACTTTTAGTATATAGCTAAAAATGGTAATTACAAATCATTTATCAAACGACACTAAACCC
1 TATTAACTTTTAGTAGATAGCTAAAAATGGTAATTACAGATCATTTATCAAACGACACTCAACCC
* * * *
7425340 AATCCGCGTTCGCTACCATTATTGATGTTATTTTTACTTTGTTAAAACATGCTATAAGTCGTTTC
66 AATCCGCGTTCGCTACCATTATTGATGTTATTTTTACTTAGTTAAAACATGTTATTAGTAGTTTC
** *
7425405 TTTCAATATTATAAAAAAATATGTTATCGGTCTTAT-A-AG-A-A-TTAAAATTTAGTCTATATA
131 TTTCGTTATTATAAAAAAATATGTTATTGGTCTTATAATAGAAGATTTAAAATTTAGTCTATATA
* * *
7425465 CTTAAATTACTAAAACATAAGCCCTCTCGCTTTCCTAGTCTGAAAATCACAGCCCCATGACTAAA
196 CTTAAATGACTAAAACATAAGCCCTCTCGCTTTCCTAGTCTAAAAATCACAGCCCCATCACTAAA
** * * *
7425530 ATTA-TTG-ATTTTTTTATCAAGATTTACAAACTTGACATGTTAATTAGAA-TACACTCAAATGA
261 ATTACAAGCA--TTTTCATCAAAATTTACAAACTTGACATGTTAATTA-AATTACACTCAAACGA
* * **
7425592 GGTTGACTACAATTGGTA-TCTTACATGAAGAAAAACTATGATATGCTATTAATC-TTATGGTAG
323 GGTTGACCACAATT-GAACTCTTACATGAAGAAAAACTATGATATAATATTAA-CATTATGGTAG
*
7425655 TTTA-AAGTAACAAC
386 TCTAGAA-TAACAAC
* *
7425669 TATTAGCTTTTAGTAGGTAGCTAAAAATGGTAATTACAGATCATTTATCAAACGACACTCAACCC
1 TATTAACTTTTAGTAGATAGCTAAAAATGGTAATTACAGATCATTTATCAAACGACACTCAACCC
* * * * ** *
7425734 AATCTGTGTTCGCTACAATTATTAATGTTATTTTTACTGGGTTAAAACATGTTATTGGTAGTTTC
66 AATCCGCGTTCGCTACCATTATTGATGTTATTTTTACTTAGTTAAAACATGTTATTAGTAGTTTC
* *
7425799 TTTCGTTATTATTAAAAAAATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGTCT
131 TTTCGTTATTA-TAAAAAAATATGTTATTGGTC-TTATA-ATAG--AAGATTTAAAATTTAGTCT
* * ** *
7425864 CTATACTAAAATGTTTAAAACATAAGCCCTCTTGCTTT
191 ATATACTTAAATGACTAAAACATAAGCCCTCTCGCTTT
7425902 TCTAATTTAA
Statistics
Matches: 540, Mismatches: 71, Indels: 37
0.83 0.11 0.06
Matches are distributed among these distances:
392 1 0.00
393 3 0.01
394 308 0.57
395 26 0.05
396 4 0.01
399 4 0.01
400 1 0.00
402 6 0.01
403 11 0.02
404 47 0.09
405 1 0.00
406 1 0.00
407 3 0.01
409 124 0.23
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (399 bp):
TATTAACTTTTAGTAGATAGCTAAAAATGGTAATTACAGATCATTTATCAAACGACACTCAACCC
AATCCGCGTTCGCTACCATTATTGATGTTATTTTTACTTAGTTAAAACATGTTATTAGTAGTTTC
TTTCGTTATTATAAAAAAATATGTTATTGGTCTTATAATAGAAGATTTAAAATTTAGTCTATATA
CTTAAATGACTAAAACATAAGCCCTCTCGCTTTCCTAGTCTAAAAATCACAGCCCCATCACTAAA
ATTACAAGCATTTTCATCAAAATTTACAAACTTGACATGTTAATTAAATTACACTCAAACGAGGT
TGACCACAATTGAACTCTTACATGAAGAAAAACTATGATATAATATTAACATTATGGTAGTCTAG
AATAACAAC
Found at i:7426016 original size:133 final size:133
Alignment explanation
Indices: 7425798--7426046 Score: 401
Period size: 133 Copynumber: 1.9 Consensus size: 133
7425788 TTGGTAGTTT
7425798 CTTTCGTTATTATTAAAAAAATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGTC
1 CTTTCGTTATTATTAAAAAAATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGTC
* ** **
7425863 TCTATACTAAAATGTTTAAAACATAAGCCCTCTTGCTTTTCTAATTTAAAACATGCTATTAAATG
66 TATATACTAAAATGGCTAAAACATAAGCCCTCTCACTTTTCTAATTTAAAACATGCTATTAAATG
7425928 TTC
131 TTC
* *
7425931 CTTTCGTTATTA-TAAAAAACATATGTTATTGGTCCTTATACTTAGATAAGATTTAAAATTTAGT
1 CTTTCGTTATTATTAAAAAA-ATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGT
* *
7425995 CTATATACTTAAATGGCTAAAACATAAGCCCTCTCACTTTTTTAATTTAAAA
65 CTATATACTAAAATGGCTAAAACATAAGCCCTCTCACTTTTCTAATTTAAAA
7426047 ATCACAGTCT
Statistics
Matches: 106, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
132 7 0.07
133 99 0.93
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.41
Consensus pattern (133 bp):
CTTTCGTTATTATTAAAAAAATATGTTATTGGTCATCATACTTAGATAAGATTTAAAATTTAGTC
TATATACTAAAATGGCTAAAACATAAGCCCTCTCACTTTTCTAATTTAAAACATGCTATTAAATG
TTC
Found at i:7426547 original size:328 final size:329
Alignment explanation
Indices: 7425908--7426565 Score: 969
Period size: 329 Copynumber: 2.0 Consensus size: 329
7425898 CTTTTCTAAT
* ** * *
7425908 TTAAAACATGCTATTAAATGTTCCTTTCGTTATTATAAAAAACATATGTTATTGGTCCTTATACT
1 TTAAAACATGATATTAAATGTTCCTTTCGTTATTATAAAAAACATATGGCATTCGTCCTTATACG
* *
7425973 TAGATAAGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCACTTTTTT
66 TAGATAAGATTTAAAATTTAGTCTATAAACTTAAATGGCTAAAACATAAGCCCTCTCACTTTTCT
* * * * *
7426038 AATTTAAAAATCACAGTCTCATCAGTAAAATTATTAGTATTTTTTATCAAAATTTACAAACTTGA
131 AATTTAAAAATCACAGCCCCAACAATAAAATTATTAGTATTTTTCATCAAAATTTACAAACTTGA
* *
7426103 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGGCATCTTACATGAAGAAAGATTA
196 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTA
* * * **
7426168 TGATATGATATTAACCTTTTGGTAGTCTACAGTAACGGCTTTTAGCTTTTAATAAATGGCTAAAA
261 TGATATAATATTAACCTTATGGTAGTCAACAGTAACGGCTAGTAGCTTTTAATAAATGGCTAAAA
7426233 ATGG
326 ATGG
* ** * * *
7426237 TTAAAACGTGATATTAGTTGTTTCTTTCGTTATTATAAAAAATATATGGCATTCGTCTTTATACG
1 TTAAAACATGATATTAAATGTTCCTTTCGTTATTATAAAAAACATATGGCATTCGTCCTTATACG
* *
7426302 TAGATAATATTTAAAATTTAGTCTATAAACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT
66 TAGATAAGATTTAAAATTTAGTCTATAAACTTAAATGGCTAAAACATAAGCCCTCTCACTTTTCT
** * *
7426367 CGTTTAAAAATCACAGCCCCAACAATAAAATTATTTGTA-TTTTCATCAATATTTACAAACTTGA
131 AATTTAAAAATCACAGCCCCAACAATAAAATTATTAGTATTTTTCATCAAAATTTACAAACTTGA
* * *
7426431 CATGTTAATTAGCCTACTCTCACTTGTGGTTGACTATAATTGACAT-TATACATGAAGAAAGACT
196 CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCT-TACATGAAGAAAGACT
* *
7426495 ATGATATAATATTAACCTTATGGTAGTCAAGAGTAACGGCTAGTAGCTTTTAATAGATGGCTAAA
260 ATGATATAATATTAACCTTATGGTAGTCAACAGTAACGGCTAGTAGCTTTTAATAAATGGCTAAA
7426560 AATGG
325 AATGG
7426565 T
1 T
7426566 AATTACAGAT
Statistics
Matches: 292, Mismatches: 36, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
327 1 0.00
328 144 0.49
329 147 0.50
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (329 bp):
TTAAAACATGATATTAAATGTTCCTTTCGTTATTATAAAAAACATATGGCATTCGTCCTTATACG
TAGATAAGATTTAAAATTTAGTCTATAAACTTAAATGGCTAAAACATAAGCCCTCTCACTTTTCT
AATTTAAAAATCACAGCCCCAACAATAAAATTATTAGTATTTTTCATCAAAATTTACAAACTTGA
CATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTA
TGATATAATATTAACCTTATGGTAGTCAACAGTAACGGCTAGTAGCTTTTAATAAATGGCTAAAA
ATGG
Found at i:7426986 original size:404 final size:403
Alignment explanation
Indices: 7426234--7427180 Score: 1324
Period size: 404 Copynumber: 2.3 Consensus size: 403
7426224 TGGCTAAAAA
* * *
7426234 TGGTTAAAACGTGATATTAGTTGTTTCTTTCGTTATTATAAAAAATATATGGCATTCGTCTTTAT
1 TGGTTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAT-TATGGCATTGGTCTTTAT
* * *
7426299 ACGTAGATAATATTTAAAATTTAGTCTATAAACTTAAATGGCTAAAACATAAGCCCTCTCGCTTT
65 ACTTAGATAATATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCACTTT
* * *
7426364 TCTCGTTTAAAAATCACAGCCCCAACAATAAAATTATTTGTATTTTCATCAATATTTACAAACTT
130 TCTAGTTTAAAAATCACAGCCCCAACAATAAAATTATTAGTATTTTCATCAAGATTTACAAACTT
** * *
7426429 GACATGTTAATTAGCCTACTCTCACTTGTGGTTGACTATAATTGACATTATACATGAAGAAAGAC
195 GACATGTTAATTAGAATACTCTCACATGAGGTTGACTATAATTGACATTATACATGAAGAAAGAC
* * *
7426494 TATGATATAATATTAACCTTATGGTAGTCAAGAGTAACGGCTAGTAGCTTTTAATAGATGGCTAA
260 TATGATATAATATTAACCTTATGATAGTCAAGAGCAACGGCTAGTAGCTTTTAATAAATGGCTAA
* * *
7426559 AAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGCGTTTGCTAACATTATTG
325 AAATGATAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGCGTTTGATAACATTATTA
*
7426624 ATATTATTTTTATT
390 ATATTATTTTTACT
* * **
7426638 TGTTTAAAACATGCTATTAGTTGTTTCTTTGGTTATTATAAAAATATTATGTTATTGGTCTTTAT
1 TGGTTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAA-ATTATGGCATTGGTCTTTAT
7426703 ACTTAGATAATATTTAAAA-TTATGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCACTT
65 ACTTAGATAATATTTAAAATTTA-GTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCACTT
* ** *
7426767 TTGTAGTTTAAAAATCACAGCCCCGTCAGTAAAATTATTAGTATTTTCATCAAGATTTACAAACT
129 TTCTAGTTTAAAAATCACAGCCCCAACAATAAAATTATTAGTATTTTCATCAAGATTTACAAACT
* *
7426832 TGACTTGTTAATTAGAATACTCTCACATGAGTTTGACTATAATTGACATCT-TACATGAAGAAAG
194 TGACATGTTAATTAGAATACTCTCACATGAGGTTGACTATAATTGACAT-TATACATGAAGAAAG
* * * * * * *
7426896 ATTATGATATACTTTTATCCTTATGATAGTCTAGAGCAACGTCTA-TAAGCTTTTAATAAATGGT
258 ACTATGATATAATATTAACCTTATGATAGTCAAGAGCAACGGCTAGT-AGCTTTTAATAAATGGC
** * * *
7426960 TAAAAATGATAATTACAGATCATTTATCAAATGACACTCAATTCAATCTGTGTTTGATGACATTA
322 TAAAAATGATAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGCGTTTGATAACATTA
* *
7427025 TTAATGTTCTTTTTACT
387 TTAATATTATTTTTACT
** *
7427042 TGGTTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAAAAATGGCATTGGTCATTATA
1 TGGTTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAATTATGGCATTGGTCTTTATA
* ** * * * * *
7427107 CTTAGATAAGATTTAAAATTTAGTCTCCATATTTAAATGGTTAAAACATAAGGCCTCTTACTTTA
66 CTTAGATAATATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCACTTTT
*
7427172 CTAATTTAA
131 CTAGTTTAA
7427181 TCAAAATTTA
Statistics
Matches: 477, Mismatches: 61, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
403 80 0.17
404 394 0.83
405 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (403 bp):
TGGTTAAAACATGCTATTAGTTGTTTCTTTCGTTATTATAAAAAATTATGGCATTGGTCTTTATA
CTTAGATAATATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCACTTTT
CTAGTTTAAAAATCACAGCCCCAACAATAAAATTATTAGTATTTTCATCAAGATTTACAAACTTG
ACATGTTAATTAGAATACTCTCACATGAGGTTGACTATAATTGACATTATACATGAAGAAAGACT
ATGATATAATATTAACCTTATGATAGTCAAGAGCAACGGCTAGTAGCTTTTAATAAATGGCTAAA
AATGATAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGCGTTTGATAACATTATTAA
TATTATTTTTACT
Found at i:7427511 original size:365 final size:365
Alignment explanation
Indices: 7426815--7427529 Score: 927
Period size: 365 Copynumber: 2.0 Consensus size: 365
7426805 TAGTATTTTC
* * * * *
7426815 ATCAAGATTTACAAACTTGACTTGTTAATTAGAATACTCTCACATGAGTTTGACTATAATTGACA
1 ATCAAAATTTAAAAACTTGACATGTTAATTAGAATACTCTCACACGAGGTTGACTATAATTGACA
* * * * * *
7426880 TCTTACATGAAGAAAGATTATGATATACTTTTATCCTTATGATAGTCTAGAGCAACGTCTATAAG
66 TCTTACATGAACAAAGACTATGATATACTATTAACATTATGATAGTCTAGAGCAACGGCTATAAG
* * **
7426945 CTTTTAATAAATGGTTAAAAATGATAATTACAGATCATTTATCAAATGACACTCAATTCAATCTG
131 CTTTTAATAAATGGCTAAAAATGATAATTACAGATCATTTATCAAATGACACTCAACTCAATCAA
* * * * **
7427010 TGTTTGATGACATTATTAATGTTCTTTTTACTTGGTTAAAACATGCTATTAGTTGTTTCTTTCGT
196 CGTTGGATGACATTATTAATATTATTTTTACGGGGTTAAAACATGCTATTAGTTGTTTCTTTCGT
* * * * * **
7427075 TATTATAAAAAAAAATGGCATTGGTCATTATACTTAGATAAGATTTAAAATTTAGTCTCCATATT
261 TATTAGAAAAAAAAATGGCATTAGTCATTATACTTAGATAAGATTTAAAATCTAATCTACATACA
*
7427140 TAAATGG-TTAAAACATAAGGCCTCTTACTTTACTAATTTA
326 TAAATGGCTT-AAACATAAGCCCTCTTACTTTACTAATTTA
*
7427180 ATCAAAATTTAAAAACTTGACATGTTAATTAGACTACTCTCACACGAGGTTGACTATAATTGACA
1 ATCAAAATTTAAAAACTTGACATGTTAATTAGAATACTCTCACACGAGGTTGACTATAATTGACA
* * * * *
7427245 TCTTACATGAACAAATACTGTGATATGA-TATTAACATTATGGTAGTCTAGAGTAACGGCTATTA
66 TCTTACATGAACAAAGACTATGATAT-ACTATTAACATTATGATAGTCTAGAGCAACGGCTATAA
* * * * *
7427309 GCTTTTAATAAATTGCTAAAAATGGTTATTACAGATCATTTATCAAATGACATTTAAC-CTAATC
130 GCTTTTAATAAATGGCTAAAAATGATAATTACAGATCATTTATCAAATGACACTCAACTC-AATC
* * *
7427373 AACGTTGGCT-ACCATTATTGATATTATTTTTTCGGGGTTAAAACATGCTATTAGTTGTTTCTTT
194 AACGTTGGATGA-CATTATTAATATTATTTTTACGGGGTTAAAACATGCTATTAGTTGTTTCTTT
* ** *
7427437 TGTTATTAGAAAAAAAAATGTTATTAGTCCA-TATACTTAGATAAGATTTAAAATCTAATCTATA
258 CGTTATTAGAAAAAAAAATGGCATTAGT-CATTATACTTAGATAAGATTTAAAATCTAATCTACA
7427501 TACATAAATGGCTTAAACATAAGCCCTCT
322 TACATAAATGGCTTAAACATAAGCCCTCT
7427530 CTCTTTTCTA
Statistics
Matches: 298, Mismatches: 47, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
364 2 0.01
365 291 0.98
366 5 0.02
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (365 bp):
ATCAAAATTTAAAAACTTGACATGTTAATTAGAATACTCTCACACGAGGTTGACTATAATTGACA
TCTTACATGAACAAAGACTATGATATACTATTAACATTATGATAGTCTAGAGCAACGGCTATAAG
CTTTTAATAAATGGCTAAAAATGATAATTACAGATCATTTATCAAATGACACTCAACTCAATCAA
CGTTGGATGACATTATTAATATTATTTTTACGGGGTTAAAACATGCTATTAGTTGTTTCTTTCGT
TATTAGAAAAAAAAATGGCATTAGTCATTATACTTAGATAAGATTTAAAATCTAATCTACATACA
TAAATGGCTTAAACATAAGCCCTCTTACTTTACTAATTTA
Found at i:7428566 original size:404 final size:402
Alignment explanation
Indices: 7427180--7429919 Score: 3293
Period size: 404 Copynumber: 6.9 Consensus size: 402
7427170 TACTAATTTA
* *
7427180 ATCAAAATTTAAAAACTTGACATGTTAATTAGACTACTCTCACACGAGGTTGACTATAATTGACA
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACA
* * * *
7427245 TCTTACATGAACAAATACTGTGATATGATATTAACATTATGGTAGTCTAGAGTAACGGCTATTAG
66 TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTAG
* * * * * * *
7427310 CTTTTAATAAATTGCTAAAAATGGTTATTACAGATCATTTATCAAATGACATTTAACCTAATCAA
131 CTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAG
* ** * *
7427375 CGTTGGCTACCATTATTGATATTATTTTT-TCGGGGTTAAAACATGCTATTAGTTGTTTCTTTTG
196 CGTTGGCTACCATTATTGATGTTATTTTTAT-TTGGTTAAAACATGATATTAGTTGTTTCTTTCG
* * * ** * * *
7427439 TTATTAGAAAAAAAAATGTTATTAGTCCATATACTTAGATAAGATTTAAAATCTAATCTATATAC
260 TTATTATAAAAAAATATGTTATTGGTCTTTATACTTAGATAAGATTTAAAATTTAGTCTATAAAC
* * * * * *
7427504 ATAAATGGCTTAAACATAAGCCCTCTCTCTTTTCTAGTTCAAAACCACAGTCCC-ATGAGTAAAA
325 TTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTATTTAAAAATCACAG-CCCTATGAGTAAAA
*
7427568 TTATTGATATTTTC
389 TTATTGGTATTTTC
** * * * * * *
7427582 ATCATGATTTACAAGCTTGACAAGTTAATTAGACAACTCTCACACGAAGTTGACTATAATAGACA
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACA
* * *
7427647 TCTTACATGAAGAAAGACTATAATATCATATTAACCTTGTGGTAGTCTAGAGTAACGGCTATTAG
66 TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTAG
* * * *
7427712 CTTTTAATAGATGGCTAAAAATGATAATTACAGATCATTCAACAAATGACACTCAACCCAATCTG
131 CTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAG
* * * * * * *
7427777 CTTTGGATACCATTATTGATATTATTTTTGTTTTTAGTTAAAACATG-TTTTAGTTTGTTCCTTT
196 CGTTGGCTACCATTATTGATGTTA-TTTT-TATTTGGTTAAAACATGATATTAG-TTGTTTCTTT
* * * * * *
7427841 CGTTATTAT-AAAAAACATCTAATTGATCCTTATACTTAGATACGATTTAAAATTTAGTCTATAA
258 CGTTATTATAAAAAAATATGTTATTGGTCTTTATACTTAGATAAGATTTAAAATTTAGTCTATAA
* * *
7427905 ACTTAAATGGTTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAAAATCACAG-TCTCATCAGTA
323 ACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT-ATTTAAAAATCACAGCCCT-ATGAGTA
* *
7427969 AAATTATTAGTATTTTTT
386 AAATTATTGGTA-TTTTC
7427987 ATCAAAATTTACAAACTTGACATGTTAATTAG---A--CT----TGAGGTTGACTATAATTTG-C
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAA-TTGAC
* *
7428042 ATCTTACATGAAGAAAGACTATGATATGATATTAACCTTTTGGTAGTCTAGAGTAACGGCTTTTA
65 ATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTA
* * * *
7428107 GCTTTTAATAAATGGCTAGAAATGGTAATTACAAATCATTTAACAAATGACACTCAACCCAATCA
130 GCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCA
* * *
7428172 GCGTTGACTACCATTATTCACT-TTATTTTTATTTGGTTAAACCATGATATTAGTTGTTTCTTTC
195 GCGTTGGCTACCATTATTGA-TGTTATTTTTATTTGGTTAAAACATGATATTAGTTGTTTCTTTC
** * * * *
7428236 GTTATTATAAAAAATATATGGCATTCGTCTTTGTACTTAGATAATATTTAAAATTTAGTCAATAA
259 GTTATTATAAAAAA-ATATGTTATTGGTCTTTATACTTAGATAAGATTTAAAATTTAGTCTATAA
** * * * * * *
7428301 ACTTAAACAGCTTAAGCATAAGCCCTTTCACTTTTCTCACTTAAAAATCACAGCCCTATTAGTAA
323 ACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT-ATTTAAAAATCACAGCCCTATGAGTAA
7428366 AATTATTGGTATTTTC
387 AATTATTGGTATTTTC
* * * *
7428382 ATCAATATTTACTAACTTGACATGTTATTTAGCCTACTCTCACATGAGGTTGACTATAATTGACA
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACA
* * * *
7428447 TCTTACAT-AGAGAAAGACTATGATATAATATTAACCTTATGGTAGTCAAGAGTAATGGCTAGTA
66 TCTTACATGA-AGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTA
*
7428511 GCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCC
130 GCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCA
* * * *
7428576 GCGTTGGCTACCATTATTGATTTTCTTTTTATTTGGTTAAAACATGTTATTAGTTGTTTCTTTGG
195 GCGTTGGCTACCATTATTGATGTTATTTTTATTTGGTTAAAACATGATATTAGTTGTTTCTTTCG
* * * *
7428641 TTATTATAAAAAAATTATGTTATTGGTCGTTATACTTAGATACGATTTAAAATTTATTCTATATA
260 TTATTATAAAAAAA-TATGTTATTGGTCTTTATACTTAGATAAGATTTAAAATTTAGTCTATAAA
* * * * * *
7428706 CTTAAATGGCTAAAACATAATCTCTCTCCCTTTTGTAGTTTAAAAATCATAGCCCCATGAGTAAA
324 CTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTA-TTTAAAAATCACAGCCCTATGAGTAAA
7428771 ATTATTGGTATTTTC
388 ATTATTGGTATTTTC
* * *
7428786 ATCGAGATTTACAAACTTGACATGTTAATTAGACTACTCTCACGTGA-GTATGACTATAATTGAC
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGT-TGACTATAATTGAC
* * * * *
7428850 ATCTTACATGAAGAAAGACTCTGATATGATATTAACCTTATGATTGTCAAGAGTAACGACTATTA
65 ATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTA
* * * * *
7428915 ACTTTTAATAGATGGCTAAAAATGGTATTTACAAATCATTTAACAAATGACACTCAACCC-ATTA
130 GCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCA
* * * *
7428979 CGCGTTGGCTACCGTTAGTGATGTTATTTTTATTTGGTTAAAACATGCTATTAGTTGTTTCTTTG
195 -GCGTTGGCTACCATTATTGATGTTATTTTTATTTGGTTAAAACATGATATTAGTTGTTTCTTTC
* *
7429044 GTTATTATAAAAATATATATGTTATTGGTCTTTATACTTAGATAATATTTAAAATCTAGTCTATA
259 GTTATTATAAAAA-A-ATATGTTATTGGTCTTTATACTTAGATAAGATTTAAAATTTAGTCTATA
* *
7429109 AACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTCGTTTAAAAATCACATCCC-ATGAGTA
322 AACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT-ATTTAAAAATCACAGCCCTATGAGTA
*
7429173 AAACTATTGGTATTTTC
386 AAATTATTGGTATTTTC
* * *
7429190 ATCAAAATTTTCAAACTTGACATGTTAATTAGCCTACTCTCACATGAGATTGACTATAATTGACA
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACA
* * *
7429255 TCTTACATGAAGAAAGACTATGATATAATATTAACATTATTGTAGTCTAGAGTAACGGCTATTAG
66 TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTAG
* * *
7429320 CTTTTAATAGATGGCTTAAAATGATAATTACAGATCATTTCTCAAATGACACTCAACCCAATCCA
131 CTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAAT-CA
* * *
7429385 -CGTTGGTTACCATTATTGATGTTATTTTTATTTGGTTAAAACAT-ACTATTATTTTTTTCTTTC
195 GCGTTGGCTACCATTATTGATGTTATTTTTATTTGGTTAAAACATGA-TATTAGTTGTTTCTTTC
* * * * *
7429448 GTTATTATAAAAAAAAATGTTATTGGT-TCATATACTTAGATAAGATTTAAATTTTAGTATATAT
259 GTTATTATAAAAAAATATGTTATTGGTCT-TTATACTTAGATAAGATTTAAAATTTAGTCTATAA
* * *
7429512 ACTTAAATGGCTAAAACATAAGGCTTCTCGCTTTTC----------T---AG---T-TTA--AAA
323 ACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTATTTAAAAATCACAGCCCTATGAGTAAA
7429558 ATTATTGGTATTTTC
388 ATTATTGGTATTTTC
* * * * *
7429573 ATCAAGATATAAAAACTTGACATGTTTATTAGACTACTCTCACGTGAGGTTGACTATAATTGACA
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACA
* * * * * * **
7429638 TCTTACATGAAGAAAAACCATGATATGTTGTTAACGTTATGGTAATCTAGAGTAACAACTATTAG
66 TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTAG
* * *
7429703 CTTTTAGTAGATGGCTAAAAATGGTAATTACATATCATTTATCAAATGACACTCAACCCAAAT-T
131 CTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCC-AATCA
* * * * * *
7429767 GTGTTCGCTACCATTATTAATGTTATTTTTACTTGGTTAAAACAT-ATTATTAGTCGTTTCTTTT
195 GCGTTGGCTACCATTATTGATGTTATTTTTATTTGGTTAAAACATGA-TATTAGTTGTTTCTTTC
* * * *
7429831 GTTATTATAAAAAAATGTGTTATTGGTGC-TTATACTTAAATAAGATTTAAAATTTAATCTATAT
259 GTTATTATAAAAAAATATGTTATTGGT-CTTTATACTTAGATAAGATTTAAAATTTAGTCTATAA
* *
7429895 ACTAAAATGGCTAAAACATATGCCC
323 ACTTAAATGGCTAAAACATAAGCCC
7429920 ATGAGTAAAA
Statistics
Matches: 2020, Mismatches: 274, Indels: 107
0.84 0.11 0.04
Matches are distributed among these distances:
383 312 0.15
384 3 0.00
385 2 0.00
388 1 0.00
391 1 0.00
394 32 0.02
395 47 0.02
396 253 0.13
397 5 0.00
398 1 0.00
400 4 0.00
401 1 0.00
402 268 0.13
403 99 0.05
404 860 0.43
405 129 0.06
406 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (402 bp):
ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACTATAATTGACA
TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTAG
CTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCAG
CGTTGGCTACCATTATTGATGTTATTTTTATTTGGTTAAAACATGATATTAGTTGTTTCTTTCGT
TATTATAAAAAAATATGTTATTGGTCTTTATACTTAGATAAGATTTAAAATTTAGTCTATAAACT
TAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTATTTAAAAATCACAGCCCTATGAGTAAAATT
ATTGGTATTTTC
Found at i:7429227 original size:808 final size:802
Alignment explanation
Indices: 7427180--7431160 Score: 4386
Period size: 808 Copynumber: 5.0 Consensus size: 802
7427170 TACTAATTTA
* **
7427180 ATCAAAATTTAAAAACTTGACATGTTAATTAGACTACTCTCACACGAGGTTGACTATAATTGACA
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACGTGAGGTTGACTATAATTGACA
* * * *
7427245 TCTTACATGAACAAATACTGTGATATGATATTAACATTATGGTAGTCTAGAGTAACGGCTATTAG
66 TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTAG
* * * * * * * *
7427310 CTTTTAATAAATTGCTAAAAATGGTTATTACAGATCATTTATCAAATGACATTTAACCTAATCAA
131 CTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCAAATGACACTCAACCCAATC-G
* * ** *
7427375 CGTTGGCTACCATTATTGATATTATTTTT-TCGGGGTTAAAACATGCTATTAGTTGTTTCTTTTG
195 CGTTGGCTACCATTATTAATGTTATTTTTAT-TTGGTTAAAACATGCTATTAGTTGTTTCTTTCG
* * * * *
7427439 TTATTAGAAAAAAAAATGTTATTAGTCCATATACTTAGATAAGATTTAAAATCTAATCTATATAC
259 TTATTATAAAAAAATATGTTATTGGTCCTTATACTTAGATAAGATTTAAAATTTAATCTATATAC
* * * * *
7427504 ATAAATGGCTTAAACATAAGCCCTCTCTCTTTTCTAGTTCAAAACCACAGTCCCATGAGTAAAAT
324 TTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTAAAAATCACA-TCCCATGAGTAAAAT
* ** * * * * *
7427569 TATTGATATTTTCATCATGATTTACAAGCTTGACAAGTTAATTAGACAACTCTCACACGAAGTTG
388 TATTGGTATTTTCATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTG
* * * *
7427634 ACTATAATAGACATCTTACATGAAGAAAGACTATAATATCATATTAACCTTGTGGTAGTCTAGAG
453 ACTATAATTGACATCTTACATG-AGAAAGACTATGATATAATATTAACCTTATGGTAGTCTAGAG
* * *
7427699 TAACGGCTATTAGCTTTTAATAGATGGCTAAAAATGATAATTACAGATCATTCAACAAATGACAC
517 TAACGGCTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACAC
* * * * *
7427764 TCAACCCAATCTGCTTTGGATACCATTATTGATATTATTTTTGTTTTTAGTTAAAACATGTT-TT
582 TCAACCCAATCCGCGTTGGATACCATTATTGATGTTA-TTTT-TATTTGGTTAAAACATGTTATT
* * * * * * *
7427828 AGTTTGTTCCTTTCGTTATTAT-AAAAAACATCTAATTGATCCTTATACTTAGATACGATTTAAA
645 AG-TTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCATTATACTTAGATAAGATTTAAA
* * *
7427892 ATTTAGTCTATAAACTTAAATGGTTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAAAATCACA
709 ATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAAAATCATA
* * *
7427957 GTCTCATCAGTAAAATTATTAGTATTTTTT
774 GCCCCATCAGTAAAATTATTAGTA-TTTTC
7427987 ATCAAAATTTACAAACTTGACATGTTAATTAG---A--CT----TGAGGTTGACTATAATTTG-C
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACGTGAGGTTGACTATAA-TTGAC
* *
7428042 ATCTTACATGAAGAAAGACTATGATATGATATTAACCTTTTGGTAGTCTAGAGTAACGGCTTTTA
65 ATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTA
* * *
7428107 GCTTTTAATAAATGGCTAGAAATGGTAATTACAAATCATTTAACAAATGACACTCAACCCAATCA
130 GCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCAAATGACACTCAACCCAATC-
* * * *
7428172 GCGTTGACTACCATTATTCACT-TTATTTTTATTTGGTTAAACCATGATATTAGTTGTTTCTTTC
194 GCGTTGGCTACCATTATT-AATGTTATTTTTATTTGGTTAAAACATGCTATTAGTTGTTTCTTTC
** * * * * * * *
7428236 GTTATTATAAAAAATATATGGCATTCGTCTTTGTACTTAGATAATATTTAAAATTTAGTCAATAA
258 GTTATTATAAAAAA-ATATGTTATTGGTCCTTATACTTAGATAAGATTTAAAATTTAATCTATAT
** * * * * * * *
7428301 ACTTAAACAGCTTAAGCATAAGCCCTTTCACTTTTCTCACTTAAAAATCACAGCCCTATTAGTAA
322 ACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCT-AGTTAAAAATCACATCCC-ATGAGTAA
* * * *
7428366 AATTATTGGTATTTTCATCAATATTTACTAACTTGACATGTTATTTAGCCTACTCTCACATGAGG
385 AATTATTGGTATTTTCATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGG
*
7428431 TTGACTATAATTGACATCTTACATAGAGAAAGACTATGATATAATATTAACCTTATGGTAGTCAA
450 TTGACTATAATTGACATCTTACAT-GAGAAAGACTATGATATAATATTAACCTTATGGTAGTCTA
* *
7428496 GAGTAATGGCTAGTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGA
514 GAGTAACGGCTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGA
* * *
7428561 CACTCAACCCAATCCGCGTTGGCTACCATTATTGATTTTCTTTTTATTTGGTTAAAACATGTTAT
579 CACTCAACCCAATCCGCGTTGGATACCATTATTGATGTTATTTTTATTTGGTTAAAACATGTTAT
* * *
7428626 TAGTTGTTTCTTTGGTTATTATAAAAAAATTATGTTATTGGTCGTTATACTTAGATACGATTTAA
644 TAGTTGTTTCTTTCGTTATTATAAAAAAA-TATGTTATTGGTCATTATACTTAGATAAGATTTAA
* * * * * *
7428691 AATTTATTCTATATACTTAAATGGCTAAAACATAATCTCTCTCCCTTTTGTAGTTTAAAAATCAT
708 AATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAAAATCAT
* *
7428756 AGCCCCATGAGTAAAATTATTGGTATTTTC
773 AGCCCCATCAGTAAAATTATTAGTATTTTC
* *
7428786 ATCGAGATTTACAAACTTGACATGTTAATTAGACTACTCTCACGTGA-GTATGACTATAATTGAC
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACGTGAGGT-TGACTATAATTGAC
* * * * *
7428850 ATCTTACATGAAGAAAGACTCTGATATGATATTAACCTTATGATTGTCAAGAGTAACGACTATTA
65 ATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTA
* * * *
7428915 ACTTTTAATAGATGGCTAAAAATGGTATTTACAAATCATTTAACAAATGACACTCAACCCATTAC
130 GCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCAAATGACACTCAACCCAAT-C
* * * *
7428980 GCGTTGGCTACCGTTAGTGATGTTATTTTTATTTGGTTAAAACATGCTATTAGTTGTTTCTTTGG
194 GCGTTGGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACATGCTATTAGTTGTTTCTTTCG
* * * * *
7429045 TTATTATAAAAATATATATGTTATTGGTCTTTATACTTAGATAATATTTAAAATCTAGTCTATAA
259 TTATTATAAAAA-A-ATATGTTATTGGTCCTTATACTTAGATAAGATTTAAAATTTAATCTATAT
*
7429110 ACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTCGTTTAAAAATCACATCCCATGAGTAAA
322 ACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAG-TTAAAAATCACATCCCATGAGTAAA
* * * *
7429175 ACTATTGGTATTTTCATCAAAATTTTCAAACTTGACATGTTAATTAGCCTACTCTCACATGAGAT
386 ATTATTGGTATTTTCATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGT
* *
7429240 TGACTATAATTGACATCTTACATGAAGAAAGACTATGATATAATATTAACATTATTGTAGTCTAG
451 TGACTATAATTGACATCTTACATG-AGAAAGACTATGATATAATATTAACCTTATGGTAGTCTAG
* * *
7429305 AGTAACGGCTATTAGCTTTTAATAGATGGCTTAAAATGATAATTACAGATCATTTCTCAAATGAC
515 AGTAACGGCTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGAC
* * **
7429370 ACTCAACCCAATCCACGTTGGTTACCATTATTGATGTTATTTTTATTTGGTTAAAACATACTATT
580 ACTCAACCCAATCCGCGTTGGATACCATTATTGATGTTATTTTTATTTGGTTAAAACATGTTATT
* * *
7429435 ATTTTTTTCTTTCGTTATTATAAAAAAAAATGTTATTGGTTCA-TATACTTAGATAAGATTTAAA
645 AGTTGTTTCTTTCGTTATTATAAAAAAATATGTTATTGG-TCATTATACTTAGATAAGATTTAAA
* * * * *
7429499 TTTTAGTATATATACTTAAATGGCTAAAACATAAGGCTTCTCGCTTTTC-----T---AGT--T-
709 ATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAAAATCATA
*
7429553 ------T-A--AAAATTATTGGTATTTTC
774 GCCCCATCAGTAAAATTATTAGTATTTTC
* * * *
7429573 ATCAAGATATAAAAACTTGACATGTTTATTAGACTACTCTCACGTGAGGTTGACTATAATTGACA
1 ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACGTGAGGTTGACTATAATTGACA
* * * * * * **
7429638 TCTTACATGAAGAAAAACCATGATATGTTGTTAACGTTATGGTAATCTAGAGTAACAACTATTAG
66 TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTAG
* * *
7429703 CTTTTAGTAGATGGCTAAAAATGGTAATTACATATCATTTATCAAATGACACTCAACCCAAATTG
131 CTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCAAATGACACTCAACCC-AATCG
* * * ** * *
7429768 TGTTCGCTACCATTATTAATGTTATTTTTACTTGGTTAAAACATATTATTAGTCGTTTCTTTTGT
195 CGTTGGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACATGCTATTAGTTGTTTCTTTCGT
* * *
7429833 TATTATAAAAAAATGTGTTATTGGTGCTTATACTTAAATAAGATTTAAAATTTAATCTATATACT
260 TATTATAAAAAAATATGTTATTGGTCCTTATACTTAGATAAGATTTAAAATTTAATCTATATACT
*
7429898 AAAATGGCTAAAACAT-A---------------T-G-------------CCCATGAGTAAAATTA
325 TAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTAAAAATCACATCCCATGAGTAAAATTA
* * * * * * **
7429933 TTAGCATTTTCATTAAATTTTAAAAACTTGACATGTT-ATTAGACTACTCACACATGACTTTGAC
390 TTGGTATTTTCATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGAC
* * * ** *
7429997 TATAATTGACATATTACATGATGAAAGACGATGATGTGGTATTAACCTTATGGTAGTCTAAAGTA
455 TATAATTGACATCTTACATGA-GAAAGACTATGATATAATATTAACCTTATGGTAGTCTAGAGTA
* * * * *
7430062 ACGACTATTAGCTTTTAATAGATGACAAAAAATGGTAGTTATAGATCATTTATCAAATGACACTC
519 ACGGCTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTC
* * * * ** * **
7430127 AAACCAATCCGTGTTCGATACCATTATTAATGTTATTTTTATTTGGTTAAAACATGCGATTTGGA
584 AACCCAATCCGCGTTGGATACCATTATTGATGTTATTTTTATTTGGTTAAAACATGTTATTAGTT
* *
7430192 ATTTCTTTCGTTATTCTAAAAAAAT-TGTTATTGGTCATTATACTTAGATAAGATTTAAAATTTA
649 GTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCATTATACTTAGATAAGATTTAAAATTTA
* * * * * * * * *
7430256 G------T--TT---T---TAAAACTTAAGCCATATCACTATTCCAATTAAAAAATCATAGTCTC
714 GTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAAAATCATAGCCCC
* *
7430307 ATCACTAAAATTATTAATATTTTC
779 ATCAGTAAAATTATTAGTATTTTC
* * * * * *
7430331 ATCAAAATTTGA-AAACTTAATATGTTGATTAGACTACTCTCACATGAGGTTGATTATAATTAAC
1 ATCAAAATTT-ACAAACTTGACATGTTAATTAGACTACTCTCACGTGAGGTTGACTATAATTGAC
* * * * * *
7430395 ATCTTACATGAATAAAGACTATGATTTGCTATTAGCCTTATGGTAGTCTAGAGTAAGGGTTATTA
65 ATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTA
* * *
7430460 GCTTTTAATAGATGACTAGAAATGGTAATTACAATTCATTTATCAAATGACACTCAACCCAATCC
130 GCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCAAATGACACTCAACCCAAT-C
* * * * * **
7430525 GCATTGGATACCATTATTAATGTTATTTTTATTTGGCTAAAACATGTTTTTAGCCGTTTCTTTCG
194 GCGTTGGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACATGCTATTAGTTGTTTCTTTCG
* * * * *
7430590 CTATTAT-AAAAAATATCTTATTGGCCCTTATACTTAGATAAAATTTAAATTTTAATCTATATAC
259 TTATTATAAAAAAATATGTTATTGGTCCTTATACTTAGATAAGATTTAAAATTTAATCTATATAC
*
7430654 TTAAACGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTTAAAAATCAC-TGCCCCATGAGTAAA
324 TTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAG-TTAAAAATCACAT--CCCATGAGTAAA
* * * *
7430718 ATTATTGATATTTTCATCAAGATTTACATACTTGACATGTTAATTAATTAGACTTCTCTCACATG
386 ATTATTGGTATTTTCATCAAAATTTACAAACTTGACATG----TTAATTAGACTACTCTCACATG
* * * *
7430783 AGGTTGACTATAATTGA-ATCTGT--A--AGAAAGTCTATGATATGATATTCACCTTGTGGTAGT
447 AGGTTGACTATAATTGACATCT-TACATGAGAAAGACTATGATATAATATTAACCTTATGGTAGT
* * * * * *
7430843 CTAGAGTAATGACTATTAGTTTTTAATAGATTGCTAAAAATTGTAATTACAAATCATTTATCAAA
511 CTAGAGTAACGGCTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAA
* * ** * *** * * *
7430908 TGACACTCAACTCTATATGTGTTCTCTACCATTATTAATGCTATTTTTACTTT-GTTAATACATG
576 TGACACTCAACCCAATCCGCGTTGGATACCATTATTGATGTTATTTTTA-TTTGGTTAAAACATG
* * ** * *
7430972 TTATTTGTCGTTTCTTTTATTATTATAAAAAAAAACTATATTATTGGTCATTATAATTAGATAAG
640 TTATTAGTTGTTTCTTTCGTTATTAT--AAAAAAA-TATGTTATTGGTCATTATACTTAGATAAG
* * *
7431037 ATTTAAATTTTAGTCTCTATACTTAAATGGTTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAA
702 ATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAA
* *
7431102 AATCACAGCCCCATCAGGAAAA-TACTTAGTATTTTC
767 AATCATAGCCCCATCAGTAAAATTA-TTAGTATTTTC
7431138 ATCAAAATTTACAAACTT-ACATG
1 ATCAAAATTTACAAACTTGACATG
7431161 GAGAATGACT
Statistics
Matches: 2686, Mismatches: 376, Indels: 225
0.82 0.11 0.07
Matches are distributed among these distances:
738 19 0.01
741 1 0.00
744 2 0.00
746 3 0.00
748 1 0.00
751 3 0.00
752 36 0.01
753 210 0.08
754 46 0.02
755 1 0.00
756 1 0.00
757 68 0.03
758 239 0.09
759 1 0.00
768 1 0.00
769 1 0.00
773 1 0.00
774 1 0.00
784 1 0.00
785 60 0.02
786 1 0.00
787 251 0.09
788 4 0.00
789 197 0.07
790 5 0.00
791 7 0.00
792 2 0.00
793 42 0.02
794 33 0.01
797 1 0.00
798 229 0.09
799 128 0.05
800 332 0.12
801 3 0.00
802 4 0.00
804 4 0.00
806 7 0.00
807 178 0.07
808 469 0.17
809 93 0.03
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (802 bp):
ATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACGTGAGGTTGACTATAATTGACA
TCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGGCTATTAG
CTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCAAATGACACTCAACCCAATCGC
GTTGGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACATGCTATTAGTTGTTTCTTTCGTT
ATTATAAAAAAATATGTTATTGGTCCTTATACTTAGATAAGATTTAAAATTTAATCTATATACTT
AAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTAAAAATCACATCCCATGAGTAAAATTAT
TGGTATTTTCATCAAAATTTACAAACTTGACATGTTAATTAGACTACTCTCACATGAGGTTGACT
ATAATTGACATCTTACATGAGAAAGACTATGATATAATATTAACCTTATGGTAGTCTAGAGTAAC
GGCTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATCAAATGACACTCAA
CCCAATCCGCGTTGGATACCATTATTGATGTTATTTTTATTTGGTTAAAACATGTTATTAGTTGT
TTCTTTCGTTATTATAAAAAAATATGTTATTGGTCATTATACTTAGATAAGATTTAAAATTTAGT
CTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAATTTAAAAATCATAGCCCCAT
CAGTAAAATTATTAGTATTTTC
Found at i:7429896 original size:383 final size:385
Alignment explanation
Indices: 7428022--7431100 Score: 2906
Period size: 404 Copynumber: 7.8 Consensus size: 385
7428012 TAATTAGACT
*
7428022 TGAGGTTGACTATAATTTG-CATCTTACATGAAGAAAGACTATGATATGATATTAACCTTTTGGT
1 TGAGGTTGACTATAA-TTGACATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGT
* * * * *
7428086 AGTCTAGAGTAACGGCTTTTAGCTTTTAATAAATGGCTAGAAATGGTAATTACAAATCATTTAAC
65 AGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATC
* * *
7428151 AAATGACACTCAACCCAATCAGCGTT-GACTACCATTATTCACT-TTATTTTTATTTGGTTAAAC
130 AAATGACACTCAACCCAATCCGCGTTCG-CTACCATTATT-AATGTTATTTTTATTTGGTTAAAA
* * ** * * *
7428214 CATGATATTAGTTGTTTCTTTCGTTATTATAAAAAATATATGGCATTCGTCTTTGTACTTAGATA
193 CATGCTATTAGTCGTTTCTTTCGTTATTATAAAAAA-ATATGTTATTGGTCATTATACTTAGATA
* * * ** * * * *
7428279 ATATTTAAAATTTAGTCAATAAACTTAAACAGCTTAAGCATAAGCCCTTTCACTTTTCTCACTTA
257 AGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGC-TTT-T--C---
* * **
7428344 AAAATCACAGCCCTATTAGTAAAATTATTGGTATTTTCATCAATATTTACTAACTTGACATG-TT
315 ----T---AG---T-TTAATAAAATTATTGGTATTTTCATCAAGATTTAAAAACTTGACATGTTT
*
7428408 ATTTAGCCTACTCTCACA
369 A-TTAGACTACTCTCACA
*
7428426 TGAGGTTGACTATAATTGACATCTTACAT-AGAGAAAGACTATGATATAATATTAACCTTATGGT
1 TGAGGTTGACTATAATTGACATCTTACATGA-AGAAAGACTATGATATGATATTAACCTTATGGT
* * * * *
7428490 AGTCAAGAGTAATGGCTAGTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAGATCATTTATC
65 AGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATC
* * * *
7428555 AAATGACACTCAACCCAATCCGCGTTGGCTACCATTATTGATTTTCTTTTTATTTGGTTAAAACA
130 AAATGACACTCAACCCAATCCGCGTTCGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACA
* * * * *
7428620 TGTTATTAGTTGTTTCTTTGGTTATTATAAAAAAATTATGTTATTGGTCGTTATACTTAGATACG
195 TGCTATTAGTCGTTTCTTTCGTTATTATAAAAAAA-TATGTTATTGGTCATTATACTTAGATAAG
* * * * *
7428685 ATTTAAAATTTATTCTATATACTTAAATGGCTAAAACATAATCTCTCTCCCTTTTGTAGTTTAAA
259 ATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAG--T---
* * *
7428750 AATCATAGCCCCATGAGTAAAATTATTGGTATTTTCATCGAGATTTACAAACTTGACATGTTAAT
319 --T--T------A--A-TAAAATTATTGGTATTTTCATCAAGATTTAAAAACTTGACATGTTTAT
*
7428815 TAGACTACTCTCACG
371 TAGACTACTCTCACA
* *
7428830 TGA-GTATGACTATAATTGACATCTTACATGAAGAAAGACTCTGATATGATATTAACCTTATGAT
1 TGAGGT-TGACTATAATTGACATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGT
* * * * *
7428894 TGTCAAGAGTAACGACTATTAACTTTTAATAGATGGCTAAAAATGGTATTTACAAATCATTTAAC
65 AGTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATC
* * * * * *
7428959 AAATGACACTCAACCCATTACGCGTTGGCTACCGTTAGTGATGTTATTTTTATTTGGTTAAAACA
130 AAATGACACTCAACCCAATCCGCGTTCGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACA
* * *
7429024 TGCTATTAGTTGTTTCTTTGGTTATTATAAAAATATATATGTTATTGGTCTTTATACTTAGATAA
195 TGCTATTAGTCGTTTCTTTCGTTATTATAAAAA-A-ATATGTTATTGGTCATTATACTTAGATAA
* * * *
7429089 TATTTAAAATCTAGTCTATAAACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTCGTTTAA
258 GATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTT--
* ** *
7429154 AAATCACATCCCATGAGTAAAACTATTGGTATTTTCATCAAAATTTTCAAACTTGACATGTTAAT
321 -AAT-A-A----A--A-T-----TATTGGTATTTTCATCAAGATTTAAAAACTTGACATGTTTAT
*
7429219 TAGCCTACTCTCACA
371 TAGACTACTCTCACA
* * * *
7429234 TGAGATTGACTATAATTGACATCTTACATGAAGAAAGACTATGATATAATATTAACATTATTGTA
1 TGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTA
* * * * *
7429299 GTCTAGAGTAACGGCTATTAGCTTTTAATAGATGGCTTAAAATGATAATTACAGATCATTTCTCA
66 GTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCA
* * * *
7429364 AATGACACTCAACCCAATCCACGTTGGTTACCATTATTGATGTTATTTTTATTTGGTTAAAACAT
131 AATGACACTCAACCCAATCCGCGTTCGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACAT
* * ** *
7429429 ACTATTATTTTTTTCTTTCGTTATTATAAAAAAAAATGTTATTGGTTCA-TATACTTAGATAAGA
196 GCTATTAGTCGTTTCTTTCGTTATTATAAAAAAATATGTTATTGG-TCATTATACTTAGATAAGA
* * * *
7429493 TTTAAATTTTAGTATATATACTTAAATGGCTAAAACATAAGGCTTCTCGCTTTTCTAGTTT-A-A
260 TTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTTAATA
* *
7429556 AAATTATTGGTATTTTCATCAAGATATAAAAACTTGACATGTTTATTAGACTACTCTCACG
325 AAATTATTGGTATTTTCATCAAGATTTAAAAACTTGACATGTTTATTAGACTACTCTCACA
* * * * *
7429617 TGAGGTTGACTATAATTGACATCTTACATGAAGAAAAACCATGATATGTTGTTAACGTTATGGTA
1 TGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTA
* * * *
7429682 ATCTAGAGTAACAACTATTAGCTTTTAGTAGATGGCTAAAAATGGTAATTACATATCATTTATCA
66 GTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCA
* * *
7429747 AATGACACTCAACCCAAAT-TGTGTTCGCTACCATTATTAATGTTATTTTTACTTGGTTAAAACA
131 AATGACACTCAACCC-AATCCGCGTTCGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACA
** * * *
7429811 TATTATTAGTCGTTTCTTTTGTTATTATAAAAAAATGTGTTATTGGTGC-TTATACTTAAATAAG
195 TGCTATTAGTCGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGT-CATTATACTTAGATAAG
* * * *
7429875 ATTTAAAATTTAATCTATATACTAAAATGGCTAAAACATATGCCC-AT-G-------AG-----T
259 ATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTTAAT
* * * *
7429926 AAAATTATTAGCATTTTCATTAA-ATTTTAAAAACTTGACATG-TTATTAGACTACTCACACA
324 AAAATTATTGGTATTTTCATCAAGA-TTTAAAAACTTGACATGTTTATTAGACTACTCTCACA
** * * * * *
7429987 TGACTTTGACTATAATTGACATATTACATGATGAAAGACGATGATGTGGTATTAACCTTATGGTA
1 TGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTA
* * * * * *
7430052 GTCTAAAGTAACGACTATTAGCTTTTAATAGATGACAAAAAATGGTAGTTATAGATCATTTATCA
66 GTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCA
* * *
7430117 AATGACACTCAAACCAATCCGTGTTCGATACCATTATTAATGTTATTTTTATTTGGTTAAAACAT
131 AATGACACTCAACCCAATCCGCGTTCGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACAT
* * *** *
7430182 GCGATTTGGAATTTCTTTCGTTATTCTAAAAAAAT-TGTTATTGGTCATTATACTTAGATAAGAT
196 GCTATTAGTCGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCATTATACTTAGATAAGAT
* * * * * * ** * ******
7430246 TTAAAATTTAGTTTTTAAAACTT-AA--GCCATATCACTATTCCAAT-TAAAAAATCATAGTCTC
261 TTAAAATTTAGTCTAT-ATACTTAAATGGCTAAAACA-TAAGCC-CTCTCGCTTTTC-TAGT-T-
* ** * * * * *
7430307 ATCACTAAAATTATTAATATTTTCATCAAAATTTGAAAACTTAATATGTTGATTAGACTACTCTC
320 -T-AATAAAATTATTGGTATTTTCATCAAGATTTAAAAACTTGACATGTTTATTAGACTACTCTC
7430372 ACA
383 ACA
* * * * * *
7430375 TGAGGTTGATTATAATTAACATCTTACATGAATAAAGACTATGATTTGCTATTAGCCTTATGGTA
1 TGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTA
* ** * * *
7430440 GTCTAGAGTAAGGGTTATTAGCTTTTAATAGATGACTAGAAATGGTAATTACAATTCATTTATCA
66 GTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCA
* * * *
7430505 AATGACACTCAACCCAATCCGCATTGGATACCATTATTAATGTTATTTTTATTTGGCTAAAACAT
131 AATGACACTCAACCCAATCCGCGTTCGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACAT
* * * * * * * *
7430570 GTTTTTAGCCGTTTCTTTCGCTATTAT-AAAAAATATCTTATTGGCCCTTATACTTAGATAAAAT
196 GCTATTAGTCGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCATTATACTTAGATAAGAT
* * *
7430634 TTAAATTTTAATCTATATACTTAAACGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTTAAAAA
261 TTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAG--T-----
* * *
7430699 TCACTGCCCCATGAGTAAAATTATTGATATTTTCATCAAGATTTACATACTTGACATGTTAATTA
319 T---T-----A--A-TAAAATTATTGGTATTTTCATCAAGATTTAAAAACTTGACATG-T--TT-
*
7430764 ATTAGACTTCTCTCACA
369 ATTAGACTACTCTCACA
* * * *
7430781 TGAGGTTGACTATAATTGA-ATC-T--GT-AAGAAAGTCTATGATATGATATTCACCTTGTGGTA
1 TGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTA
* * * *
7430841 GTCTAGAGTAATGACTATTAGTTTTTAATAGATTGCTAAAAATTGTAATTACAAATCATTTATCA
66 GTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCA
* * ** * * * *
7430906 AATGACACTCAACTCTATATGTGTTCTCTACCATTATTAATGCTATTTTTACTTT-GTTAATACA
131 AATGACACTCAACCCAATCCGCGTTCGCTACCATTATTAATGTTATTTTTA-TTTGGTTAAAACA
* * ** * *
7430970 TGTTATTTGTCGTTTCTTTTATTATTATAAAAAAAAACTATATTATTGGTCATTATAATTAGATA
195 TGCTATTAGTCGTTTCTTTCGTTATTAT--AAAAAAA-TATGTTATTGGTCATTATACTTAGATA
* * * *
7431035 AGATTTAAATTTTAGTCTCTATACTTAAATGGTTAAAACATAAGCCCTCTCGCTTTTCTAATTTA
257 AGATTTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTTA
7431100 A
322 A
7431101 AAATCACAGC
Statistics
Matches: 2237, Mismatches: 338, Indels: 216
0.80 0.12 0.08
Matches are distributed among these distances:
367 6 0.00
368 6 0.00
369 45 0.02
370 216 0.10
371 36 0.02
374 2 0.00
378 2 0.00
381 1 0.00
382 2 0.00
383 308 0.14
384 3 0.00
387 47 0.02
388 250 0.11
389 9 0.00
390 11 0.00
391 3 0.00
392 1 0.00
393 4 0.00
394 1 0.00
395 4 0.00
396 3 0.00
398 4 0.00
399 3 0.00
401 155 0.07
402 120 0.05
403 17 0.01
404 779 0.35
405 165 0.07
406 34 0.02
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39
Consensus pattern (385 bp):
TGAGGTTGACTATAATTGACATCTTACATGAAGAAAGACTATGATATGATATTAACCTTATGGTA
GTCTAGAGTAACGACTATTAGCTTTTAATAGATGGCTAAAAATGGTAATTACAAATCATTTATCA
AATGACACTCAACCCAATCCGCGTTCGCTACCATTATTAATGTTATTTTTATTTGGTTAAAACAT
GCTATTAGTCGTTTCTTTCGTTATTATAAAAAAATATGTTATTGGTCATTATACTTAGATAAGAT
TTAAAATTTAGTCTATATACTTAAATGGCTAAAACATAAGCCCTCTCGCTTTTCTAGTTTAATAA
AATTATTGGTATTTTCATCAAGATTTAAAAACTTGACATGTTTATTAGACTACTCTCACA
Found at i:7431911 original size:402 final size:399
Alignment explanation
Indices: 7431153--7432565 Score: 1667
Period size: 402 Copynumber: 3.5 Consensus size: 399
7431143 AATTTACAAA
* * * *
7431153 CTTACATGGAGAATGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGA
1 CTTACAAGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGC
* * * *
7431218 TTTTAATAGGTGACTAAAAATGGTAATTATAGATCATTTATCAAATAACACTCAACCCAATCCGT
66 TTTTAATAGATGACTAAAAATTGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGT
* * * * *
7431283 GGTCGGTACCATTATTAATGTTATTTTTATTTGGTTAAAACATGCTATT-TGTAATTTCTTTCGT
131 GTTCGTTACCATTATTAATGTTATTTTTACTTGGTTAAAACATGTTATTAT-T-GTTTCTTTCGT
* * * * * *
7431347 TATTATAAAAAACATGGTATTGGTCATTAT-ACTTGCATAAC-ATTTAAAAATTAGCATTTGTAC
194 TATTATAAAAAATATGTTATTGGTCATTATCA-TTGAAT-ACGATTTAAAATTTAAC-TCTGTAC
* * * **** *
7431410 TTAAATGGTTAAAACTTAAG-GCTTATGACTTTTCTAATTTGAAAATCACAGTTTCATCATTAAA
256 TTAAATGGTTAAAACATAAGCCCTT-TG-CTTTTCTAATTTAAAAATCACAACCCCATCAGTAAA
* * * * *
7431474 ATTATTTGCAATTTCATCAAAATTTGCAAACTTGACATATTGATTAAATTACTCTCACATGAGGT
319 ATTATTAGTATTTTCATCAAAATTTACAAACTTGACATATTGATTAAATTATTCTCACATGAGGT
7431539 TGACTATAATTGACAT
384 TGACTATAATTGACAT
* *
7431555 CTTACAAGAAGAAAGACTATGACATGCTATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGC
1 CTTACAAGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGC
* * * *
7431620 TTTTAATAGATCACTAAAAATTGTAATTACAGATTATTTATCAAATGACACCCAACCCAATTCGT
66 TTTTAATAGATGACTAAAAATTGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGT
* * *
7431685 CTTGGTTACCATTATTAATGTTATTTTTACTTAGTTAAAACATGTTATTAGTTGTTTCTTTCGTT
131 GTTCGTTACCATTATTAATGTTATTTTTACTTGGTTAAAACATGTTATTA-TTGTTTCTTTCGTT
* * * *
7431750 ATTATAAAAAATATGTTATTGGTCACTATGCATAG-ATACGATTTAAAATTTATTCTCCGTACTT
195 ATTATAAAAAATATGTTATTGGTCATTAT-CATTGAATACGATTTAAAATTTA-ACTCTGTACTT
* * * *
7431814 AAATGTTTAAAACATAAGCCCTTTCGCCTGTCTAATTTAAAAATCACAACCCCGTCAGTAAAATT
258 AAATGGTTAAAACATAAGCCCTTT-GCTTTTCTAATTTAAAAATCACAACCCCATCAGTAAAATT
* * * *
7431879 ATTAGTATTTTCATCAAAATTTACAAACTTGACATGTTGATTAGACTT-TTTTCACATGAGATTG
322 ATTAGTATTTTCATCAAAATTTACAAACTTGACATATTGATTA-AATTATTCTCACATGAGGTTG
*
7431943 ACTATAATTAACAT
386 ACTATAATTGACAT
* * * * *
7431957 CGTA-AATGAAGAAAGACTATGATATGGTATTAAACTTATGGTAGTCCAGAGTAATGACTATTAG
1 CTTACAA-GAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAG
* * *
7432021 CTTTTAATAGATGGCTAAAAAATGTAATTACAGATCATTTATCAAATGACACTCAATCCAATCCG
65 CTTTTAATAGATGACTAAAAATTGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCG
* * *
7432086 TGTTCGTTGCCATTATTAATGTTATTTTTACTTGGTCT-AAGCATGTTATTATTCGTTT-ATT--
130 TGTTCGTTACCATTATTAATGTTATTTTTACTTGGT-TAAAACATGTTATTATT-GTTTCTTTCG
* * *
7432147 TTGTTATAAAAAATATGTTATTGGTTATTAT-ATTTGAATAAGATTTAAAATTTAGACTCTGTAC
193 TTATTATAAAAAATATGTTATTGGTCATTATCA-TTGAATACGATTTAAAATTTA-ACTCTGTAC
* * *
7432211 TTAAATGGTTAAAACATTAGCCCTCTTGCTTTTCTAATTTAAAAATCACATCCCAATCAGTAAAA
256 TTAAATGGTTAAAACATAAGCCCT-TTGCTTTTCTAATTTAAAAATCACAACCCCATCAGTAAAA
* * * *
7432276 TTATTAGTATTTTCATCAAAAATTACAAACTTGACATTTTGATTATACTATTCTCACATGAGGTT
320 TTATTAGTATTTTCATCAAAATTTACAAACTTGACATATTGATTAAATTATTCTCACATGAGGTT
7432341 GACTATAATTGACAT
385 GACTATAATTGACAT
* * * * *
7432356 C-TACATGAAGAAATACAATGATATGATATTAAGCTTTTGGTAGTCTAGAGTAACGACTATTAGC
1 CTTACAAGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGC
* * ** * * * ** *
7432420 TTTTAATAGATGGCAAAAAATAATAATTATAGATCATTTATCAAATGACATTTAAATCAATCTGT
66 TTTTAATAGATGACTAAAAATTGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGT
* * * *
7432485 GTTCGCTACAATTATTAATGTTATTTTTATTTTGGTTAAAATATG-TA--A---TTTCTTTCGTT
131 GTTCGTTACCATTATTAATGTTATTTTTA-CTTGGTTAAAACATGTTATTATTGTTTCTTTCGTT
7432544 ATTATAAAAAAATATGTTATTG
195 ATTAT-AAAAAATATGTTATTG
7432566 ATTATTATAC
Statistics
Matches: 868, Mismatches: 120, Indels: 52
0.83 0.12 0.05
Matches are distributed among these distances:
392 3 0.00
393 2 0.00
395 6 0.01
396 17 0.02
397 1 0.00
398 140 0.16
399 188 0.22
400 2 0.00
401 8 0.01
402 487 0.56
403 12 0.01
404 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.39
Consensus pattern (399 bp):
CTTACAAGAAGAAAGACTATGATATGATATTAACCTTATGGTAGTCTAGAGTAACGACTATTAGC
TTTTAATAGATGACTAAAAATTGTAATTACAGATCATTTATCAAATGACACTCAACCCAATCCGT
GTTCGTTACCATTATTAATGTTATTTTTACTTGGTTAAAACATGTTATTATTGTTTCTTTCGTTA
TTATAAAAAATATGTTATTGGTCATTATCATTGAATACGATTTAAAATTTAACTCTGTACTTAAA
TGGTTAAAACATAAGCCCTTTGCTTTTCTAATTTAAAAATCACAACCCCATCAGTAAAATTATTA
GTATTTTCATCAAAATTTACAAACTTGACATATTGATTAAATTATTCTCACATGAGGTTGACTAT
AATTGACAT
Found at i:7434642 original size:2 final size:2
Alignment explanation
Indices: 7434635--7434664 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7434625 TATGAAATGC
7434635 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7434665 TCATCTCCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7440975 original size:60 final size:60
Alignment explanation
Indices: 7440911--7441105 Score: 151
Period size: 60 Copynumber: 3.1 Consensus size: 60
7440901 CATTTTTTTT
7440911 ATTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTA
1 ATTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTA
* * * ** * * * * * **
7440971 ATTTTTATATGTTAAATTTAA-ATTTTAATTTAATTATAATATTAATTTTGAGATAAT-TCATTT
1 ATTTTTA-AT-TTATAGTCAATATCCT--TTTCA-T-T-AGATT-CTTCT-AAATAATGT-AACT
** *
7441034 TTTTT
56 AGTTA
7441039 ATTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTA
1 ATTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTA
7441099 ATTTTTA
1 ATTTTTA
7441106 CATAAAATAA
Statistics
Matches: 93, Mismatches: 30, Indels: 24
0.63 0.20 0.16
Matches are distributed among these distances:
60 24 0.26
61 9 0.10
62 11 0.12
63 5 0.05
64 2 0.02
65 5 0.05
66 11 0.12
67 9 0.10
68 17 0.18
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.53
Consensus pattern (60 bp):
ATTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTA
Found at i:7440990 original size:128 final size:129
Alignment explanation
Indices: 7440847--7441105 Score: 511
Period size: 128 Copynumber: 2.0 Consensus size: 129
7440837 TTTATGCAAA
7440847 TATATGTTAATATTTAAATTTTAATTTAATTATAATATTAATTTTGAGATAATTCATTTTTTTTA
1 TATATGTTAATATTTAAATTTTAATTTAATTATAATATTAATTTTGAGATAATTCATTTTTTTTA
7440912 TTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTAATTTT
66 TTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTAATTTT
7440976 TATATGTTAA-ATTTAAATTTTAATTTAATTATAATATTAATTTTGAGATAATTCATTTTTTTTA
1 TATATGTTAATATTTAAATTTTAATTTAATTATAATATTAATTTTGAGATAATTCATTTTTTTTA
7441040 TTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTAATTTT
66 TTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTAATTTT
7441104 TA
1 TA
7441106 CATAAAATAA
Statistics
Matches: 130, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
128 120 0.92
129 10 0.08
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.54
Consensus pattern (129 bp):
TATATGTTAATATTTAAATTTTAATTTAATTATAATATTAATTTTGAGATAATTCATTTTTTTTA
TTTTTAATTTATAGTCAATATCCTTTTCATTAGATTCTTCTAAATAATGTAACTAGTTAATTTT
Found at i:7442190 original size:16 final size:18
Alignment explanation
Indices: 7442151--7442184 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7442141 TAAGTTTATA
7442151 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
7442168 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
7442185 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:7442277 original size:18 final size:17
Alignment explanation
Indices: 7442241--7442316 Score: 66
Period size: 18 Copynumber: 4.4 Consensus size: 17
7442231 TGACTATATA
* *
7442241 AAAAATTTAAATAAA-T
1 AAAAATTAAAAAAAATT
*
7442257 AAAAAATAAAAAAATATT
1 AAAAATTAAAAAAA-ATT
*
7442275 AAATATTAAAATAAAA-T
1 AAAAATTAAAA-AAAATT
7442292 AAAATATTTAAAAAAAATT
1 AAAA-A-TTAAAAAAAATT
7442311 AAAAAT
1 AAAAAT
7442317 AATATGGGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
16 11 0.23
17 6 0.12
18 17 0.35
19 14 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
AAAAATTAAAAAAAATT
Found at i:7442284 original size:25 final size:26
Alignment explanation
Indices: 7442240--7442315 Score: 72
Period size: 25 Copynumber: 3.1 Consensus size: 26
7442230 ATGACTATAT
7442240 AAAAAAT-TTAAATAAATAAAA-AATA
1 AAAAAATATTAAATAAATAAAATAA-A
*
7442265 AAAAAATATTAAAT-ATTAAAATAAA
1 AAAAAATATTAAATAAATAAAATAAA
* * *
7442290 ATAAAATATTTAA-AAA-AAATTAAA
1 AAAAAATATTAAATAAATAAAATAAA
7442314 AA
1 AA
7442316 TAATATGGGC
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
24 8 0.19
25 26 0.62
26 8 0.19
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (26 bp):
AAAAAATATTAAATAAATAAAATAAA
Found at i:7442307 original size:17 final size:17
Alignment explanation
Indices: 7442238--7442307 Score: 63
Period size: 17 Copynumber: 4.1 Consensus size: 17
7442228 TAATGACTAT
* *
7442238 ATAAAAAATTTAAATAA
1 ATAAAATATTTAAAAAA
*
7442255 ATAAAA-A-ATAAAAAA
1 ATAAAATATTTAAAAAA
*
7442270 ATATTAAATATTAAAATAAA
1 ATA--AAATATTTAAA-AAA
7442290 ATAAAATATTTAAAAAA
1 ATAAAATATTTAAAAAA
7442307 A
1 A
7442308 ATTAAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
15 9 0.21
16 1 0.02
17 13 0.30
18 11 0.26
19 3 0.07
20 6 0.14
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
ATAAAATATTTAAAAAA
Found at i:7448042 original size:9 final size:9
Alignment explanation
Indices: 7448028--7448059 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7448018 GTAGTGATTC
7448028 AATTCGGGT
1 AATTCGGGT
7448037 AATTCGGGT
1 AATTCGGGT
*
7448046 AATTCGGTT
1 AATTCGGGT
7448055 AATTC
1 AATTC
7448060 AGTTAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (9 bp):
AATTCGGGT
Found at i:7448066 original size:18 final size:18
Alignment explanation
Indices: 7448028--7448067 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7448018 GTAGTGATTC
*
7448028 AATTCGGGTAATTCGGGT
1 AATTCGGGTAATTCAGGT
* *
7448046 AATTCGGTTAATTCAGTT
1 AATTCGGGTAATTCAGGT
7448064 AATT
1 AATT
7448068 TTTAACCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (18 bp):
AATTCGGGTAATTCAGGT
Found at i:7449473 original size:24 final size:24
Alignment explanation
Indices: 7449440--7449485 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7449430 TGCGTAAGAA
*
7449440 TGCTCAATTCGTGTGGTTAGAGAT
1 TGCTCAATTCGTGTAGTTAGAGAT
*
7449464 TGCTCCATTCGTGTAGTTAGAG
1 TGCTCAATTCGTGTAGTTAGAG
7449486 GCACAACAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.28, T:0.37
Consensus pattern (24 bp):
TGCTCAATTCGTGTAGTTAGAGAT
Done.