Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 25 of 136
Found at i:7943382 original size:29 final size:29
Alignment explanation
Indices: 7943340--7943401 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
7943330 TTTTATTAAA
* *
7943340 ATGAAGAGACTAAAAAAACTTAAAATAGT
1 ATGAAAAGACTAAAAAAACTTAAAATAAT
* * *
7943369 ATGAAAAGACTAAAATATCTTAGAATAAT
1 ATGAAAAGACTAAAAAAACTTAAAATAAT
7943398 ATGA
1 ATGA
7943402 CTTATTATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.56, C:0.06, G:0.13, T:0.24
Consensus pattern (29 bp):
ATGAAAAGACTAAAAAAACTTAAAATAAT
Found at i:7960106 original size:26 final size:27
Alignment explanation
Indices: 7960053--7960106 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
7960043 ACTACACAAG
* *
7960053 ATTTTTAAAAATTTTAATTAAACCTTA
1 ATTTTTAAAAATTCTAATTAAACATTA
* *
7960080 ATTTTTAAAAGTTCTCATTAAA-ATTA
1 ATTTTTAAAAATTCTAATTAAACATTA
7960106 A
1 A
7960107 ACTCAAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (27 bp):
ATTTTTAAAAATTCTAATTAAACATTA
Found at i:7963070 original size:20 final size:20
Alignment explanation
Indices: 7963022--7963067 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
7963012 TAATTTTTTT
7963022 ATATTATT-ACTAATTTATA
1 ATATTATTAACTAATTTATA
*
7963041 ATAATATTAACTAATTTA-A
1 ATATTATTAACTAATTTATA
7963060 ATATTATT
1 ATATTATT
7963068 TAAATGNNNN
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATTATTAACTAATTTATA
Found at i:7966679 original size:215 final size:215
Alignment explanation
Indices: 7966308--7966735 Score: 856
Period size: 215 Copynumber: 2.0 Consensus size: 215
7966298 AATACCAAAA
7966308 CAAGTTATTTCCAACTCTCATGAAACACTTTCACTAACTTTCCAGAATCACTTATCAATTTAATC
1 CAAGTTATTTCCAACTCTCATGAAACACTTTCACTAACTTTCCAGAATCACTTATCAATTTAATC
7966373 TCGTATATCTCTTTTCAATAAATATATCTTTATATCATACTTTCTGAAATATAGATTTTTTTTTC
66 TCGTATATCTCTTTTCAATAAATATATCTTTATATCATACTTTCTGAAATATAGATTTTTTTTTC
7966438 CGACTATCTGTCTTCATACTCATGAATAGACATGCTTAAATACATACAACTCAAATCTCATATCG
131 CGACTATCTGTCTTCATACTCATGAATAGACATGCTTAAATACATACAACTCAAATCTCATATCG
7966503 ATAAATCAGTTCACTCTACT
196 ATAAATCAGTTCACTCTACT
7966523 CAAGTTATTTCCAACTCTCATGAAACACTTTCACTAACTTTCCAGAATCACTTATCAATTTAATC
1 CAAGTTATTTCCAACTCTCATGAAACACTTTCACTAACTTTCCAGAATCACTTATCAATTTAATC
7966588 TCGTATATCTCTTTTCAATAAATATATCTTTATATCATACTTTCTGAAATATAGATTTTTTTTTC
66 TCGTATATCTCTTTTCAATAAATATATCTTTATATCATACTTTCTGAAATATAGATTTTTTTTTC
7966653 CGACTATCTGTCTTCATACTCATGAATAGACATGCTTAAATACATACAACTCAAATCTCATATCG
131 CGACTATCTGTCTTCATACTCATGAATAGACATGCTTAAATACATACAACTCAAATCTCATATCG
7966718 ATAAATCAGTTCACTCTA
196 ATAAATCAGTTCACTCTA
7966736 ATAAAACAAT
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 213 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (215 bp):
CAAGTTATTTCCAACTCTCATGAAACACTTTCACTAACTTTCCAGAATCACTTATCAATTTAATC
TCGTATATCTCTTTTCAATAAATATATCTTTATATCATACTTTCTGAAATATAGATTTTTTTTTC
CGACTATCTGTCTTCATACTCATGAATAGACATGCTTAAATACATACAACTCAAATCTCATATCG
ATAAATCAGTTCACTCTACT
Found at i:7968201 original size:66 final size:65
Alignment explanation
Indices: 7968118--7968313 Score: 178
Period size: 56 Copynumber: 3.1 Consensus size: 65
7968108 TTGGACCAGA
* *
7968118 AAAAAAAGCTCAAGTACCAAATTTAAAAAAAAAGTACAAGTGTCAATTTCAGGTACCAAATTGGA
1 AAAAAAAGCTCAGGTACCAAA-TTAAAAAAAAAGTACAAGTGTCAAATTCAGGTACCAAATTGGA
7968183 C
65 C
* ** * * *
7968184 AAAAAAAGCTTAGGTACC--A-T--ACTAGAA--A-AA-TGTCAAATTCAAGAACCAAATTGGAC
1 AAAAAAAGCTCAGGTACCAAATTAAAAAAAAAGTACAAGTGTCAAATTCAGGTACCAAATTGGAC
* * * *
7968240 AAAAAAAACTCAGGTAACAAATTAGAAAAAAAAGTACAAGTTTCAAGTTC-GTGTACCAAATTGG
1 AAAAAAAGCTCAGGTACCAAATTA-AAAAAAAAGTACAAGTGTCAAATTCAG-GTACCAAATTGG
7968304 ACC
64 A-C
7968307 AAAAAAA
1 AAAAAAA
7968314 TTTAGATATC
Statistics
Matches: 100, Mismatches: 18, Indels: 23
0.71 0.13 0.16
Matches are distributed among these distances:
56 38 0.38
57 2 0.02
58 2 0.02
59 1 0.01
60 4 0.04
62 5 0.05
64 2 0.02
65 2 0.02
66 36 0.36
67 8 0.08
ACGTcount: A:0.52, C:0.15, G:0.14, T:0.20
Consensus pattern (65 bp):
AAAAAAAGCTCAGGTACCAAATTAAAAAAAAAGTACAAGTGTCAAATTCAGGTACCAAATTGGAC
Found at i:7968305 original size:122 final size:125
Alignment explanation
Indices: 7968056--7968400 Score: 414
Period size: 122 Copynumber: 2.7 Consensus size: 125
7968046 TGGACAAAAA
* * * *
7968056 AAAAAAACCTTAAGTACCAGACTAGGAAAAAAAGTCAAGTTCAAGAACTAAATTGGACCAGAAAA
1 AAAAAAA-CTTAGGTACCAAACTA-GAAAAAATGTCAAGTTCAAGAACCAAATTGGACC--AAAA
* *
7968121 AAAAGCTCAAGTACCAAATTTA-AAAAAAAAGTACAAGTGTCAATTTCAGGTACCAAATTGGA-C
62 AAAAGCTCAGGTACCAAA-TTAGAAAAAAAAGTACAAGTGTCAAGTTCAGGTACCAAATTGGACC
* *
7968184 AAAAAAAGCTTAGGTACCATACTAG-AAAAATGTCAAATTCAAGAACCAAATTGGA-CAAAAAAA
1 AAAAAAA-CTTAGGTACCAAACTAGAAAAAATGTCAAGTTCAAGAACCAAATTGGACCAAAAAAA
* *
7968247 A-CTCAGGTAACAAATTAGAAAAAAAAGTACAAGTTTCAAGTTC-GTGTACCAAATTGGACC
65 AGCTCAGGTACCAAATTAGAAAAAAAAGTACAAGTGTCAAGTTCAG-GTACCAAATTGGACC
* * * * **
7968307 AAAAAAATTTAGATATCAAACTAGAAAAAAAGTGTCTAGTTCAAGAACCAAATTGGATAATAAAA
1 AAAAAAACTTAGGTACCAAACTAG-AAAAAA-TGTCAAGTTCAAGAACCAAATTGGACCA-AAAA
7968372 AAAGCTCAGGTACCAAATTAGAAAAAAAA
63 AAAGCTCAGGTACCAAATTAGAAAAAAAA
7968401 ATACCAAATT
Statistics
Matches: 190, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
121 4 0.02
122 60 0.32
123 16 0.08
124 5 0.03
125 24 0.13
126 28 0.15
127 8 0.04
128 45 0.24
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.20
Consensus pattern (125 bp):
AAAAAAACTTAGGTACCAAACTAGAAAAAATGTCAAGTTCAAGAACCAAATTGGACCAAAAAAAA
GCTCAGGTACCAAATTAGAAAAAAAAGTACAAGTGTCAAGTTCAGGTACCAAATTGGACC
Found at i:7968407 original size:20 final size:21
Alignment explanation
Indices: 7968382--7968420 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
7968372 AAAGCTCAGG
7968382 TACCAAATT-AGAAAAAAAAA
1 TACCAAATTAAGAAAAAAAAA
7968402 TACCAAATTAAGAAAAAAA
1 TACCAAATTAAGAAAAAAA
7968421 TGTCAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.69, C:0.10, G:0.05, T:0.15
Consensus pattern (21 bp):
TACCAAATTAAGAAAAAAAAA
Found at i:7968475 original size:79 final size:83
Alignment explanation
Indices: 7968329--7968478 Score: 200
Period size: 79 Copynumber: 1.9 Consensus size: 83
7968319 ATATCAAACT
* * *
7968329 AGAAAAAAAGTGTCTAGTTCAAGAACCAAATTGGATAATAAAAAAAGCTCAGGTACCAAATTAGA
1 AGAAAAAAAGTGTCAAGTTCAAGAACCAAAATGGATAATAAAAAAAGCTCAGATACCAAATTAGA
7968394 AAAAAAAATACCAAATTA
66 AAAAAAAATACCAAATTA
* * * * *
7968412 AGAAAAAAA-TGTCAATTTCAAGTACCAAAAT-GA-AA-AAAAAAATCTTAGATACTAAATTAGA
1 AGAAAAAAAGTGTCAAGTTCAAGAACCAAAATGGATAATAAAAAAAGCTCAGATACCAAATTAGA
7968473 AAAAAA
66 AAAAAA
7968479 TCAAGTTGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 28 0.47
80 2 0.03
81 2 0.03
82 18 0.31
83 9 0.15
ACGTcount: A:0.58, C:0.11, G:0.11, T:0.20
Consensus pattern (83 bp):
AGAAAAAAAGTGTCAAGTTCAAGAACCAAAATGGATAATAAAAAAAGCTCAGATACCAAATTAGA
AAAAAAAATACCAAATTA
Found at i:7975910 original size:15 final size:15
Alignment explanation
Indices: 7975892--7975938 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
7975882 AAGAAAATTG
7975892 AAGAAAAATTCTTGA
1 AAGAAAAATTCTTGA
7975907 AAG-AAAA--C-TG-
1 AAGAAAAATTCTTGA
7975917 AAGAAAAATTCTTGA
1 AAGAAAAATTCTTGA
7975932 AAGAAAA
1 AAGAAAA
7975939 CTCAAAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
10 3 0.11
11 6 0.22
12 1 0.04
13 1 0.04
14 6 0.22
15 10 0.37
ACGTcount: A:0.60, C:0.06, G:0.15, T:0.19
Consensus pattern (15 bp):
AAGAAAAATTCTTGA
Found at i:7975918 original size:25 final size:25
Alignment explanation
Indices: 7975881--7975940 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
7975871 AACTCTTCTA
*
7975881 AAAGAAAATTGAAGAAAAATTCTTG
1 AAAGAAAACTGAAGAAAAATTCTTG
7975906 AAAGAAAACTGAAGAAAAATTCTTG
1 AAAGAAAACTGAAGAAAAATTCTTG
7975931 AAAGAAAACT
1 AAAGAAAACT
7975941 CAAAGAGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.58, C:0.07, G:0.15, T:0.20
Consensus pattern (25 bp):
AAAGAAAACTGAAGAAAAATTCTTG
Found at i:7976030 original size:12 final size:12
Alignment explanation
Indices: 7976013--7976040 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7976003 TACAATGAAA
7976013 AGACCTTTATAT
1 AGACCTTTATAT
7976025 AGACCTTTATAT
1 AGACCTTTATAT
7976037 AGAC
1 AGAC
7976041 TAATAATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (12 bp):
AGACCTTTATAT
Found at i:7976318 original size:138 final size:138
Alignment explanation
Indices: 7976161--7976979 Score: 1604
Period size: 138 Copynumber: 5.9 Consensus size: 138
7976151 TCGGAATAAA
7976161 AAAAT-AAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
1 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
7976225 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
66 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
7976290 ACTCATAT
131 ACTCATAT
7976298 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
1 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
7976363 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
66 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
7976428 ACTCATAT
131 ACTCATAT
7976436 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
1 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
7976501 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
66 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
7976566 ACTCATAT
131 ACTCATAT
7976574 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
1 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
7976639 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
66 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
7976704 ACTCATAT
131 ACTCATAT
7976712 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
1 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
7976777 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
66 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
7976842 ACTCATAT
131 ACTCATAT
7976850 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
1 AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
* * *
7976915 AAAACCCAAACCCAATATGATTTAAACTTAAATTAAAAGCTTGAAACTTGTAATTTCCGTAATAA
66 AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
7976980 TTCCGTCCAA
Statistics
Matches: 678, Mismatches: 3, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
137 5 0.01
138 673 0.99
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (138 bp):
AAAATAAAAAATAATAAGAGTTGATAAATACTATCTTGGACTCATATATAATAAAAATTAAGTCT
AAAACCCGAACCCAATATGATTTAAACTTAAATTAAAAGCTCGAAACTCGTAATTTCCGTAATAA
ACTCATAT
Found at i:7978868 original size:20 final size:19
Alignment explanation
Indices: 7978832--7978892 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
7978822 TATAAACGCA
*
7978832 ATTGAGCTTAAAATGAGCTG
1 ATTGAGC-TAAAGTGAGCTG
7978852 ATTGAGCTAAGAGTGAGCTCG
1 ATTGAGCTAA-AGTGAGCT-G
7978873 A-TGAGCTAAAGTTGAGCTG
1 ATTGAGCTAAAG-TGAGCTG
7978892 A
1 A
7978893 ATGAACTTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
19 7 0.19
20 28 0.76
21 2 0.05
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (19 bp):
ATTGAGCTAAAGTGAGCTG
Found at i:7983149 original size:40 final size:42
Alignment explanation
Indices: 7983094--7983175 Score: 150
Period size: 40 Copynumber: 2.0 Consensus size: 42
7983084 TTTCTTACCC
7983094 GTGCCTTGGTTCCACCTTTGAGGATTGTT-G-GTTAGGAAAG
1 GTGCCTTGGTTCCACCTTTGAGGATTGTTGGTGTTAGGAAAG
7983134 GTGCCTTGGTTCCACCTTTGAGGATTGTTGGTGTTAGGAAAG
1 GTGCCTTGGTTCCACCTTTGAGGATTGTTGGTGTTAGGAAAG
7983176 ATTCGGCTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 29 0.73
41 1 0.03
42 10 0.25
ACGTcount: A:0.17, C:0.15, G:0.33, T:0.35
Consensus pattern (42 bp):
GTGCCTTGGTTCCACCTTTGAGGATTGTTGGTGTTAGGAAAG
Found at i:7984517 original size:11 final size:12
Alignment explanation
Indices: 7984503--7984555 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
7984493 AATTTTTTTC
7984503 TTTTTTTC-AAT
1 TTTTTTTCAAAT
* *
7984514 TTTTTTT-GATT
1 TTTTTTTCAAAT
* *
7984525 TTTTTTTCGATT
1 TTTTTTTCAAAT
7984537 TTTTTTTCAAAT
1 TTTTTTTCAAAT
7984549 TTTTTTT
1 TTTTTTT
7984556 TCACGAGTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
11 16 0.43
12 21 0.57
ACGTcount: A:0.13, C:0.06, G:0.04, T:0.77
Consensus pattern (12 bp):
TTTTTTTCAAAT
Found at i:7984550 original size:13 final size:12
Alignment explanation
Indices: 7984503--7984558 Score: 71
Period size: 11 Copynumber: 4.8 Consensus size: 12
7984493 AATTTTTTTC
7984503 TTTTTTTCAA-T
1 TTTTTTTCAATT
*
7984514 TTTTTTT-GATT
1 TTTTTTTCAATT
*
7984525 TTTTTTTCGATT
1 TTTTTTTCAATT
7984537 TTTTTTTCAAATT
1 TTTTTTTC-AATT
7984550 TTTTTTTCA
1 TTTTTTTCA
7984559 CGAGTCTACT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
10 1 0.03
11 15 0.38
12 13 0.32
13 11 0.28
ACGTcount: A:0.14, C:0.07, G:0.04, T:0.75
Consensus pattern (12 bp):
TTTTTTTCAATT
Found at i:7985081 original size:20 final size:19
Alignment explanation
Indices: 7985045--7985105 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
7985035 TATAAACGCA
*
7985045 ATTGAGCTTAAAATGAGCTG
1 ATTGAGC-TAAAGTGAGCTG
7985065 ATTGAGCTAAGAGTGAGCTCG
1 ATTGAGCTAA-AGTGAGCT-G
*
7985086 A-TAAGCTAAAGTTGAGCTG
1 ATTGAGCTAAAG-TGAGCTG
7985105 A
1 A
7985106 ATGAACTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
19 7 0.19
20 27 0.75
21 2 0.06
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (19 bp):
ATTGAGCTAAAGTGAGCTG
Found at i:7990195 original size:74 final size:74
Alignment explanation
Indices: 7990100--7990237 Score: 231
Period size: 74 Copynumber: 1.9 Consensus size: 74
7990090 CATTCAAAGA
* *
7990100 TATGGTGGAATCAGCACTTAGCAACCACTAATGATTCGAGGAATCAGCACTTAGCAACCCCTTAT
1 TATGGTGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAACACTTAGCAACCCCTTAT
7990165 ACAATCTGT
66 ACAATCTGT
* * *
7990174 TATGGTGGAATCAGCACTTAGCAACCACCGATGATTTGGGGAATCAACACTTAGCAACCCCTTA
1 TATGGTGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAACACTTAGCAACCCCTTA
7990238 GGGGAATCAG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 59 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (74 bp):
TATGGTGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAACACTTAGCAACCCCTTAT
ACAATCTGT
Found at i:7990460 original size:51 final size:51
Alignment explanation
Indices: 7990341--7990570 Score: 303
Period size: 51 Copynumber: 4.6 Consensus size: 51
7990331 CCGATACACA
7990341 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTC---A--CG
1 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCG
* * *
7990387 TAGTAAGCCTGCACATAGTACTACACATGTGATCGAAGCTATTCGGTATGCA
1 TAGT-AGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCG
* * ** * *
7990439 TAGTAGCCTGCACATAGTACTACACATGCGA-CCCATC-ATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATT-CGGTACGCG
*
7990489 TAGTAGCCTACACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCG
1 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCG
7990540 TAGTAGCCTGCACATAGTACTACACACGTGA
1 TAGTAGCCTGCACATAGTACTACACACGTGA
7990571 CCATCACTTT
Statistics
Matches: 158, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
46 4 0.03
47 38 0.24
49 3 0.02
50 38 0.24
51 67 0.42
52 8 0.05
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCG
Found at i:7990522 original size:101 final size:102
Alignment explanation
Indices: 7990383--7990565 Score: 323
Period size: 101 Copynumber: 1.8 Consensus size: 102
7990373 CGAAGCTATT
* * *
7990383 CACGTAGTAAGCCTGCACATAGTACTACACATGTGATCGAAGCTATTCGGTATGCATAGTAGCCT
1 CACGTAGTAAGCCTACACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATAGTAGCCT
7990448 GCACATAGTACTACACATGCGACCCATCATTCCGGTA
66 GCACATAGTACTACACATGCGACCCATCATTCCGGTA
*
7990485 CACGTAGT-AGCCTACACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCGTAGTAGCCT
1 CACGTAGTAAGCCTACACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATAGTAGCCT
7990549 GCACATAGTACTACACA
66 GCACATAGTACTACACA
7990566 CGTGACCATC
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
101 69 0.90
102 8 0.10
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (102 bp):
CACGTAGTAAGCCTACACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATAGTAGCCT
GCACATAGTACTACACATGCGACCCATCATTCCGGTA
Found at i:7992633 original size:23 final size:22
Alignment explanation
Indices: 7992587--7992635 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 22
7992577 CTAATCATTT
7992587 ATTAATAAAATAATACTAAAAAC
1 ATTAATAAAATAATA-TAAAAAC
7992610 ATTAATAAAAATAAT-TAAATAAC
1 ATTAAT-AAAATAATATAAA-AAC
7992633 ATT
1 ATT
7992636 TATCTAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.17
23 12 0.50
24 8 0.33
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (22 bp):
ATTAATAAAATAATATAAAAAC
Found at i:7993485 original size:3 final size:3
Alignment explanation
Indices: 7993479--7993536 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
7993469 TGTTGTTTTC
*
7993479 ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7993527 ATT ATT ATT A
1 ATT ATT ATT A
7993537 GTTCATATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:7993565 original size:16 final size:16
Alignment explanation
Indices: 7993489--7993592 Score: 61
Period size: 18 Copynumber: 6.1 Consensus size: 16
7993479 ATTATTATTG
*
7993489 TTATTATTATTATTATTA
1 TTATT-TTATTA-TATAA
*
7993507 TTATTATTATTATTATTA
1 TTATT-TTATTA-TATAA
*
7993525 TTATTATTATTAGT-TCA
1 TTATT-TTATTA-TATAA
7993542 -TATATTTATCTATATAA
1 TTAT-TTTAT-TATATAA
*
7993559 TT-TTTTATGTATATGCA
1 TTATTTTAT-TATAT-AA
7993576 TTATTTTATTATATAA
1 TTATTTTATTATATAA
7993592 T
1 T
7993593 ATTATTTTAA
Statistics
Matches: 74, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
16 20 0.27
17 16 0.22
18 38 0.51
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (16 bp):
TTATTTTATTATATAA
Found at i:7993810 original size:16 final size:16
Alignment explanation
Indices: 7993786--7993827 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
7993776 TTCAACTTTA
7993786 ATATATTATTATGTAT
1 ATATATTATTATGTAT
* *
7993802 ATATGTTATTATTTAT
1 ATATATTATTATGTAT
7993818 AT-TATTATTA
1 ATATATTATTA
7993828 AATCTTTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
ATATATTATTATGTAT
Found at i:7993822 original size:12 final size:13
Alignment explanation
Indices: 7993786--7993827 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
7993776 TTCAACTTTA
7993786 ATATATTATTATGT
1 ATATATTATTAT-T
7993800 ATATATGTTATTATT
1 ATATA--TTATTATT
7993815 -TATATTATTATT
1 ATATATTATTATT
7993827 A
1 A
7993828 AATCTTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 8 0.32
14 9 0.36
15 1 0.04
16 7 0.28
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (13 bp):
ATATATTATTATT
Found at i:7993915 original size:21 final size:21
Alignment explanation
Indices: 7993872--7993924 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
7993862 TAATATATGT
**
7993872 ATATAAT-TTTATGTATTTTG
1 ATATAATATTTATGTATTGGG
*
7993892 ATATAATATTTATTTATTGGG
1 ATATAATATTTATGTATTGGG
*
7993913 ATACTATTATTT
1 ATA-TAATATTT
7993925 TATGAAGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 7 0.26
21 13 0.48
22 7 0.26
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (21 bp):
ATATAATATTTATGTATTGGG
Found at i:7996008 original size:28 final size:29
Alignment explanation
Indices: 7995990--7996288 Score: 185
Period size: 29 Copynumber: 10.3 Consensus size: 29
7995980 ACATAATTTG
*
7995990 CTAC-AAGACATTCCTTTAATAGAGATAT
1 CTACAAAGACATTCCTTTAACAGAGATAT
*
7996018 CTACAAAGACATTCCTTTAACAGAGATAG
1 CTACAAAGACATTCCTTTAACAGAGATAT
* * *
7996047 CCACAAAGATA-TCCTTTTAACAGAGATAG
1 CTACAAAGACATTCC-TTTAACAGAGATAT
* * * *
7996076 CCACAAAGGCA-TCCTTATAACAGATATAG
1 CTACAAAGACATTCCTT-TAACAGAGATAT
* * * *
7996105 CCACAAAGGCA-TCCTTATAATAGAGATAA
1 CTACAAAGACATTCCTT-TAACAGAGATAT
* * * * **
7996134 CCACGAAGACTTTCTTTTAACAGAGATCG
1 CTACAAAGACATTCCTTTAACAGAGATAT
* * * **
7996163 CCACAAAGACTTTCTTTTAACAGAGATCG
1 CTACAAAGACATTCCTTTAACAGAGATAT
* * * **
7996192 CCACAAAGACTTTCTTTTAACAGAGATCG
1 CTACAAAGACATTCCTTTAACAGAGATAT
* * * **
7996221 CCACAAAGACTTTCTTTTAACAGAGATCG
1 CTACAAAGACATTCCTTTAACAGAGATAT
* * * *
7996250 CCACAAAGACTTTCTTTTAATAGAGATCAT
1 CTACAAAGACATTCCTTTAACAGAGAT-AT
7996280 C-ACAAAGAC
1 CTACAAAGAC
7996289 TCACTTTTAA
Statistics
Matches: 245, Mismatches: 21, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
28 9 0.04
29 231 0.94
30 5 0.02
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.26
Consensus pattern (29 bp):
CTACAAAGACATTCCTTTAACAGAGATAT
Found at i:7996289 original size:29 final size:29
Alignment explanation
Indices: 7996020--7996315 Score: 342
Period size: 29 Copynumber: 10.2 Consensus size: 29
7996010 AGAGATATCT
* * *
7996020 ACAAAGACATTCCTTTAACAGAGATAGCC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
* *
7996049 ACAAAGA-TATCCTTTTAACAGAGATAGCC
1 ACAAAGACT-TTCTTTTAACAGAGATCGCC
* * * * * *
7996078 ACAAAGGCATCCTTATAACAGATATAGCC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
* * * * * **
7996107 ACAAAGGCATCCTTATAATAGAGATAACC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
*
7996136 ACGAAGACTTTCTTTTAACAGAGATCGCC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
7996165 ACAAAGACTTTCTTTTAACAGAGATCGCC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
7996194 ACAAAGACTTTCTTTTAACAGAGATCGCC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
7996223 ACAAAGACTTTCTTTTAACAGAGATCGCC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
* **
7996252 ACAAAGACTTTCTTTTAATAGAGATCATC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
** * *
7996281 ACAAAGACTCACTTTTAACTGAGATAGCC
1 ACAAAGACTTTCTTTTAACAGAGATCGCC
7996310 ACAAAG
1 ACAAAG
7996316 CGTCCTTTTA
Statistics
Matches: 236, Mismatches: 29, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
29 236 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.25
Consensus pattern (29 bp):
ACAAAGACTTTCTTTTAACAGAGATCGCC
Found at i:8004998 original size:104 final size:104
Alignment explanation
Indices: 8004818--8005026 Score: 402
Period size: 104 Copynumber: 2.0 Consensus size: 104
8004808 GTACTCACCT
8004818 TTGTGTTGTGTTTCTAGGGCATTTAGGACAGTTTTGGAGAGATAAGGGAATGTGAGCTAAGCTCC
1 TTGTGTTGTGTTTCTAGGGCATTTAGGACAGTTTTGGAGAGATAAGGGAATGTGAGCTAAGCTCC
8004883 ATTCACCGAGATATGTTTGGTGTGTTGTAGAGTGCTAGC
66 ATTCACCGAGATATGTTTGGTGTGTTGTAGAGTGCTAGC
8004922 TTGTGTTGTGGTTT-TAGGGCATTTAGGACAGTTTTGGAGAGATAAGGGAATGTGAGCTAAGCTC
1 TTGTGTTGT-GTTTCTAGGGCATTTAGGACAGTTTTGGAGAGATAAGGGAATGTGAGCTAAGCTC
8004986 CATTCACCGAGATATGTTTGGTGTGTTGTAGAGTGCTAGC
65 CATTCACCGAGATATGTTTGGTGTGTTGTAGAGTGCTAGC
8005026 T
1 T
8005027 ATATGCTACA
Statistics
Matches: 104, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
104 100 0.96
105 4 0.04
ACGTcount: A:0.22, C:0.11, G:0.32, T:0.35
Consensus pattern (104 bp):
TTGTGTTGTGTTTCTAGGGCATTTAGGACAGTTTTGGAGAGATAAGGGAATGTGAGCTAAGCTCC
ATTCACCGAGATATGTTTGGTGTGTTGTAGAGTGCTAGC
Found at i:8009372 original size:19 final size:18
Alignment explanation
Indices: 8009348--8009392 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
8009338 TCATCAAGTG
8009348 GAAAATGGTTATATCAAAT
1 GAAAATGGTTAT-TCAAAT
*
8009367 GAAAATTGGTTATTGAAAT
1 GAAAA-TGGTTATTCAAAT
*
8009386 GGAAATG
1 GAAAATG
8009393 ACATTTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 14 0.61
20 7 0.30
ACGTcount: A:0.44, C:0.02, G:0.22, T:0.31
Consensus pattern (18 bp):
GAAAATGGTTATTCAAAT
Found at i:8009390 original size:20 final size:20
Alignment explanation
Indices: 8009340--8009390 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
8009330 GCTATAGTTC
*
8009340 ATCAAGTGGAAAATGGTTAT
1 ATCAAATGGAAAATGGTTAT
8009360 ATCAAAT-GAAAATTGGTTAT
1 ATCAAATGGAAAA-TGGTTAT
*
8009380 -TGAAATGGAAA
1 ATCAAATGGAAA
8009391 TGACATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (20 bp):
ATCAAATGGAAAATGGTTAT
Found at i:8015436 original size:52 final size:53
Alignment explanation
Indices: 8015343--8015450 Score: 164
Period size: 52 Copynumber: 2.1 Consensus size: 53
8015333 AAAATTGCTT
* *
8015343 AAAATGGAGAAATGAGAAACATTTGGAAATGATTATAGTTTTCTCCATAATGA
1 AAAATGGAGAAATGAGAAACATTTGGAAATGAATATAGTTTTCTCCAAAATGA
* * *
8015396 AAAATGGAGAAATG-GAATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGA
1 AAAATGGAGAAATGAGAAACATTTGGAAATGAATATAGTTTTCTCCAAAATGA
8015448 AAA
1 AAA
8015451 TAAAGATGAC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
52 36 0.72
53 14 0.28
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (53 bp):
AAAATGGAGAAATGAGAAACATTTGGAAATGAATATAGTTTTCTCCAAAATGA
Found at i:8016709 original size:14 final size:15
Alignment explanation
Indices: 8016679--8016711 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8016669 TAAAAATTTT
*
8016679 AATTTTTTTTGTGTA
1 AATTTTTTTTGTCTA
8016694 AATTTTTTTT-TCTA
1 AATTTTTTTTGTCTA
8016708 AATT
1 AATT
8016712 GGATTTCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.67
Consensus pattern (15 bp):
AATTTTTTTTGTCTA
Found at i:8020648 original size:20 final size:19
Alignment explanation
Indices: 8020600--8020649 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
8020590 TAACAAAAAT
*
8020600 TTATCCGTATCAACAGTAA
1 TTATCCATATCAACAGTAA
8020619 CTTA-CACATATCAACAGTAA
1 -TTATC-CATATCAACAGTAA
8020639 TTCATCCATAT
1 TT-ATCCATAT
8020650 AATTACATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 3 0.12
20 22 0.85
21 1 0.04
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (19 bp):
TTATCCATATCAACAGTAA
Found at i:8020822 original size:26 final size:24
Alignment explanation
Indices: 8020793--8020858 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 24
8020783 CTTTCGAGCC
*
8020793 ATGATCGGTAAGCTCACTCTGAGCTG
1 ATGAACGGTAAGCTCA-TC-GAGCTG
*
8020819 ATGAACAGTAAGCTCTATCGAGCTG
1 ATGAACGGTAAGCTC-ATCGAGCTG
8020844 A--AACGGTAAGCTCAT
1 ATGAACGGTAAGCTCAT
8020859 AAAAGTTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 2 0.06
23 11 0.31
25 7 0.19
26 15 0.42
27 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (24 bp):
ATGAACGGTAAGCTCATCGAGCTG
Found at i:8020856 original size:23 final size:25
Alignment explanation
Indices: 8020798--8020857 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 25
8020788 GAGCCATGAT
8020798 CGGTAAGCTCACTCTGAGCTGATGAA
1 CGGTAAGCTCACTCTGAGCTGA-GAA
*
8020824 CAGTAAGCTCTA-TC-GAGCTGA-AA
1 CGGTAAGCTC-ACTCTGAGCTGAGAA
8020847 CGGTAAGCTCA
1 CGGTAAGCTCA
8020858 TAAAAGTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 1 0.03
23 11 0.35
25 7 0.23
26 11 0.35
27 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (25 bp):
CGGTAAGCTCACTCTGAGCTGAGAA
Found at i:8023675 original size:29 final size:29
Alignment explanation
Indices: 8023629--8023708 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 29
8023619 GTGTCGTTGA
*
8023629 TTACAGTTATTAGGTACTTTGTACCGATG
1 TTACAGTTATCAGGTACTTTGTACCGATG
* ** *
8023658 TTACAGTTATCAGATACTTTGTAGTGGTG
1 TTACAGTTATCAGGTACTTTGTACCGATG
*
8023687 TTACAGTTATCAGGCACTTTGT
1 TTACAGTTATCAGGTACTTTGT
8023709 GTCAGTGTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (29 bp):
TTACAGTTATCAGGTACTTTGTACCGATG
Found at i:8023716 original size:29 final size:29
Alignment explanation
Indices: 8023605--8023729 Score: 101
Period size: 29 Copynumber: 4.3 Consensus size: 29
8023595 TCATTAGGGT
* * *
8023605 TTATCAGACACTATGTGTCGTTGATTACAG
1 TTATCAGGCACTTTGTGTCGATG-TTACAG
* * **
8023635 TTATTAGGTACTTTGTACCGATGTTACAG
1 TTATCAGGCACTTTGTGTCGATGTTACAG
** *
8023664 TTATCAGATACTTTGTAGT-GGTGTTACAG
1 TTATCAGGCACTTTGT-GTCGATGTTACAG
* *
8023693 TTATCAGGCACTTTGTGTC-AGTGTTATAC
1 TTATCAGGCACTTTGTGTCGA-TGTTACAG
8023722 TTATCAGG
1 TTATCAGG
8023730 TATTACGTAT
Statistics
Matches: 75, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
28 2 0.03
29 57 0.76
30 16 0.21
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (29 bp):
TTATCAGGCACTTTGTGTCGATGTTACAG
Found at i:8027564 original size:51 final size:51
Alignment explanation
Indices: 8027484--8027877 Score: 343
Period size: 51 Copynumber: 7.8 Consensus size: 51
8027474 TATCGATGAA
*
8027484 CACGTGTGTAGTACTATGTGAAGGCTACTACATGTACCGATAAATAATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATAATGGT
** * * * * *
8027535 CAAATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAA-ATAATGGT
* * *
8027586 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTACCGATAAATGATGGC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATAATGGT
* * * * *
8027637 CACGTGTGTAGTACTATGTGAAGGCTATTACGTGAATCG-TAAA-ATTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATA-ATGGT
* * * *
8027687 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCG--GAATGATGGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATAAT-GGT
* * * *** * * * *
8027737 CGCATGTGTAGTACTATGTGCAGGCTACTATACGTACTGAATAGAT-TTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCG-ATAAATAATGGT
* * **
8027788 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGA-AATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGATAAATAATGGT
* * * * *
8027839 CACATGTGTAGTACTACGTGCAGGCTACTATGTGAACCG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCG
8027878 GTGACCATTG
Statistics
Matches: 276, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
49 3 0.01
50 79 0.29
51 188 0.68
52 4 0.01
53 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATAATGGT
Found at i:8027660 original size:102 final size:101
Alignment explanation
Indices: 8027484--8027877 Score: 456
Period size: 102 Copynumber: 3.9 Consensus size: 101
8027474 TATCGATGAA
* * *
8027484 CACGTGTGTAGTACTATGTGAAGGCTACTACATGTACCGATAAATAATGGTCAAATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGATGGTCACATGTGTAGTAC
* * * *
8027549 TAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGGT
66 TATGTGAAGGCTACTATGTGAACCGA-AAGATTTGAT
* * *
8027586 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTACCGATAAATGATGGCCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGATGGTCACATGTGTAGTAC
* * *
8027651 TATGTGAAGGCTATTACGTGAATCGTAAA-ATTTGAT
66 TATGTGAAGGCTACTATGTGAACCG-AAAGATTTGAT
* * * *
8027687 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCG--GAATGATGGGTCGCATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGAT-GGTCACATGTGTAGTA
* ** * *
8027750 CTATGTGCAGGCTACTATACGTACTGAATAGATTTGAT
65 CTATGTGAAGGCTACTATGTGAACCGAA-AGATTTGAT
* * *
8027788 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGAA--ATGGTCACATGTGTAGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGAT-AAATGATGGTCACATGTGTAGT
* *
8027851 ACTACGTGCAGGCTACTATGTGAACCG
64 ACTATGTGAAGGCTACTATGTGAACCG
8027878 GTGACCATTG
Statistics
Matches: 248, Mismatches: 36, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
99 8 0.03
100 32 0.13
101 84 0.34
102 118 0.48
103 3 0.01
105 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGATGGTCACATGTGTAGTAC
TATGTGAAGGCTACTATGTGAACCGAAAGATTTGAT
Found at i:8027849 original size:202 final size:201
Alignment explanation
Indices: 8027484--8027874 Score: 491
Period size: 202 Copynumber: 1.9 Consensus size: 201
8027474 TATCGATGAA
8027484 CACGTGTGTAGTACTATGTGAAGGCTACTACATGTACCGATAAATAATGGTCAAATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACATGTACCGA-AAATAATGGTCAAATGTGTAGTAC
** * * *
8027549 TAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGGTCACGTGTGTAGTACTGTGTGAAGGCTAC
65 TAAGTGAAGGCTACTATACGTACCGAGAAGATTTGATCACGTGTGTAGTACTATGTGAAGGCTAC
* * *
8027614 TACGTGTACCGATAAATGATGGCCACGTGTGTAGTACTATGTGAAGGCTATTACGTGAATCGTAA
130 TACGTGTACCGATAAA-GATGGCCACATGTGTAGTACTACGTGAAGGCTACTACGTGAATCGTAA
8027679 AATTTGAT
194 AATTTGAT
* * * * * **
8027687 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCG-GAATGATGGGTCGCATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACATGTACCGAAAATAAT-GGTCAAATGTGTAGTAC
* * * *
8027751 TATGTGCAGGCTACTATACGTACTGA-ATAGATTTGATCACGTGTGTAGTACTATGTGCAGGCTA
65 TAAGTGAAGGCTACTATACGTACCGAGA-AGATTTGATCACGTGTGTAGTACTATGTGAAGGCTA
* * * * *
8027815 CTACGTGTATCGGATGGAA-ATGGTCACATGTGTAGTACTACGTGCAGGCTACTATGTGAA
129 CTACGTGTA-CCGAT-AAAGATGGCCACATGTGTAGTACTACGTGAAGGCTACTACGTGAA
8027875 CCGGTGACCA
Statistics
Matches: 160, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
201 6 0.04
202 112 0.70
203 40 0.25
204 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (201 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACATGTACCGAAAATAATGGTCAAATGTGTAGTACT
AAGTGAAGGCTACTATACGTACCGAGAAGATTTGATCACGTGTGTAGTACTATGTGAAGGCTACT
ACGTGTACCGATAAAGATGGCCACATGTGTAGTACTACGTGAAGGCTACTACGTGAATCGTAAAA
TTTGAT
Found at i:8027939 original size:42 final size:41
Alignment explanation
Indices: 8027892--8028035 Score: 137
Period size: 42 Copynumber: 3.7 Consensus size: 41
8027882 CCATTGACTA
*
8027892 TAAAGGTGGTTGCTAAGTGTTGATTCCACCATATTCTAAATG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCATA-TCTAAATG
* *
8027934 TAAAGGGGGTTGCTAAGTGATGATTCC-CCGA-ATC---AT-
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACC-ATATCTAAATG
* *
8027970 T---GGTGGTTGATAAGTGCTGATTCCACCGTATCTTAAATG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCATATC-TAAATG
8028009 TGAAAGG-GGTTGCTAAGTGCTGATTCC
1 T-AAAGGTGGTTGCTAAGTGCTGATTCC
8028036 CCGATTCATT
Statistics
Matches: 83, Mismatches: 7, Indels: 24
0.73 0.06 0.21
Matches are distributed among these distances:
33 20 0.24
34 5 0.06
36 1 0.01
37 2 0.02
38 2 0.02
39 1 0.01
40 2 0.02
41 3 0.04
42 45 0.54
43 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (41 bp):
TAAAGGTGGTTGCTAAGTGCTGATTCCACCATATCTAAATG
Found at i:8028019 original size:75 final size:75
Alignment explanation
Indices: 8027896--8028072 Score: 259
Period size: 75 Copynumber: 2.4 Consensus size: 75
8027886 TGACTATAAA
*
8027896 GGTGGTTGCTAAGTGTTGATTCCACCATATTCTAAATGTAAAGGGGGTTGCTAAGTGATGATTCC
1 GGTGGTTGCTAAGTGTTGATTCCACCGTATTCTAAATGTAAAGGGGGTTGCTAAGTGATGATTCC
8027961 CCGAATCATT
66 CCGAATCATT
* * *
8027971 GGTGGTTGATAAGTGCTGATTCCACCGTA-TCTTAAATGTGAAA-GGGGTTGCTAAGTGCTGATT
1 GGTGGTTGCTAAGTGTTGATTCCACCGTATTC-TAAATGT-AAAGGGGGTTGCTAAGTGATGATT
*
8028034 CCCCGATTCATT
64 CCCCGAATCATT
* *
8028046 AGTGGTTGCTAAGTGTTGAATCCACCG
1 GGTGGTTGCTAAGTGTTGATTCCACCG
8028073 ATAACGGATA
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
74 2 0.02
75 86 0.95
76 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.33
Consensus pattern (75 bp):
GGTGGTTGCTAAGTGTTGATTCCACCGTATTCTAAATGTAAAGGGGGTTGCTAAGTGATGATTCC
CCGAATCATT
Found at i:8031372 original size:17 final size:17
Alignment explanation
Indices: 8031350--8031383 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8031340 TATGTTTTTA
8031350 TATGAATGGTTGAGATG
1 TATGAATGGTTGAGATG
*
8031367 TATGAATGTTTGAGATG
1 TATGAATGGTTGAGATG
8031384 CCAATTGTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.38
Consensus pattern (17 bp):
TATGAATGGTTGAGATG
Found at i:8035257 original size:11 final size:11
Alignment explanation
Indices: 8035241--8035273 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8035231 TAGGCTCATG
8035241 GTTTCATTCAA
1 GTTTCATTCAA
*
8035252 GTTTCATTAAA
1 GTTTCATTCAA
8035263 GTTTCA-TCAA
1 GTTTCATTCAA
8035273 G
1 G
8035274 AAAATTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (11 bp):
GTTTCATTCAA
Found at i:8035772 original size:160 final size:161
Alignment explanation
Indices: 8035508--8035827 Score: 633
Period size: 160 Copynumber: 2.0 Consensus size: 161
8035498 TTTACAGTGT
8035508 TACAAAGTGAACTAATTAGTTTAATACTAAACAACTTAAAATAAATTATTATCGAACTACATTTA
1 TACAAAGTGAACTAATTAGTTTAATACTAAACAACTTAAAATAAATTATTATCGAACTACATTTA
8035573 TAGTTCAAACACAAAATCCTATTTACATGCTCCTAACCAATCACTTGTATCTTTACAAGCTCGAG
66 TAGTTCAAACACAAAATCCTATTTACATGCTCCTAACCAATCACTTGTATCTTTACAAGCTCGAG
8035638 CACAAACAAGCACAAAAAA-TTAAATCAAAA
131 CACAAACAAGCACAAAAAATTTAAATCAAAA
8035668 TACAAAGTGAACTAATTAGTTTAATACTAAACAACTTAAAATAAATTATTATCGAACTACATTTA
1 TACAAAGTGAACTAATTAGTTTAATACTAAACAACTTAAAATAAATTATTATCGAACTACATTTA
8035733 TAGTTCAAACACAAAATCCTATTTACATGCTCCTAACCAATCACTTGTATCTTTACAAGCTCGAG
66 TAGTTCAAACACAAAATCCTATTTACATGCTCCTAACCAATCACTTGTATCTTTACAAGCTCGAG
8035798 CACAAACAAGCACAAAAAATTTAAATCAAA
131 CACAAACAAGCACAAAAAATTTAAATCAAA
8035828 CTACGAAAAG
Statistics
Matches: 159, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
160 149 0.94
161 10 0.06
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.28
Consensus pattern (161 bp):
TACAAAGTGAACTAATTAGTTTAATACTAAACAACTTAAAATAAATTATTATCGAACTACATTTA
TAGTTCAAACACAAAATCCTATTTACATGCTCCTAACCAATCACTTGTATCTTTACAAGCTCGAG
CACAAACAAGCACAAAAAATTTAAATCAAAA
Found at i:8038879 original size:18 final size:18
Alignment explanation
Indices: 8038856--8038890 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8038846 CAAGAATGGT
8038856 AAGCACCAAAATAGTTTC
1 AAGCACCAAAATAGTTTC
*
8038874 AAGCACGAAAATAGTTT
1 AAGCACCAAAATAGTTT
8038891 GGCACATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (18 bp):
AAGCACCAAAATAGTTTC
Found at i:8043100 original size:50 final size:50
Alignment explanation
Indices: 8043020--8043205 Score: 273
Period size: 50 Copynumber: 3.7 Consensus size: 50
8043010 ATTTGGGTAA
*
8043020 AGAGATCCCATGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
8043070 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * * * *
8043120 AGAGGTCCCCTTTAAGACCATGTCTGGGACATGGCATCGGCACCCATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
8043170 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGC
8043206 TTCGGCATGC
Statistics
Matches: 123, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 94 0.76
51 29 0.24
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:8050702 original size:2 final size:2
Alignment explanation
Indices: 8050695--8050725 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8050685 ACCCATTTGA
8050695 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8050726 GCCTTTGCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8054960 original size:30 final size:27
Alignment explanation
Indices: 8054926--8055008 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
8054916 GGAACACCTT
* *
8054926 TTGGAACTTCAGTTTCAACAGCAGCGGCAG
1 TTGGAACTTCAG---CAACAGCAGCAGCAA
*
8054956 TTGGAACTTCAGCGACAGCAGCAGCAA
1 TTGGAACTTCAGCAACAGCAGCAGCAA
* *
8054983 TTGGAACTTAAGCGACAGCAGCAGCA
1 TTGGAACTTCAGCAACAGCAGCAGCA
8055009 GCAGCAGCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 37 0.76
30 12 0.24
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (27 bp):
TTGGAACTTCAGCAACAGCAGCAGCAA
Found at i:8054986 original size:27 final size:27
Alignment explanation
Indices: 8054943--8055008 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
8054933 TTCAGTTTCA
* * *
8054943 ACAGCAGCGGCAGTTGGAACTTCAGCG
1 ACAGCAGCAGCAATTGGAACTTAAGCG
8054970 ACAGCAGCAGCAATTGGAACTTAAGCG
1 ACAGCAGCAGCAATTGGAACTTAAGCG
8054997 ACAGCAGCAGCA
1 ACAGCAGCAGCA
8055009 GCAGCAGCAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.33, C:0.26, G:0.29, T:0.12
Consensus pattern (27 bp):
ACAGCAGCAGCAATTGGAACTTAAGCG
Found at i:8055023 original size:66 final size:63
Alignment explanation
Indices: 8054944--8055071 Score: 175
Period size: 66 Copynumber: 2.0 Consensus size: 63
8054934 TCAGTTTCAA
* * *
8054944 CAGCAGCGGCAGTTGGAACTTCAGCGACAGCAGCAGCAATTGGAACTTAAGCGACAGCAGCAGCA
1 CAGCAGCAGCAGTTGGAACTTCAGAGACAGCAGCAGC---TGGAACTTAAGCGACAACAGCAGCA
8055009 G
63 G
* * *
8055010 CAGCAGCAGCAGTTGGAACTTCAGAGGCAGCAGCAGCTGGAACTTCAGCGGCAACAGCAGCA
1 CAGCAGCAGCAGTTGGAACTTCAGAGACAGCAGCAGCTGGAACTTAAGCGACAACAGCAGCA
8055072 ACTGGAACTA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
63 22 0.39
66 34 0.61
ACGTcount: A:0.31, C:0.27, G:0.30, T:0.12
Consensus pattern (63 bp):
CAGCAGCAGCAGTTGGAACTTCAGAGACAGCAGCAGCTGGAACTTAAGCGACAACAGCAGCAG
Found at i:8055026 original size:39 final size:39
Alignment explanation
Indices: 8054971--8055046 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
8054961 ACTTCAGCGA
*
8054971 CAGCAGCAGCAATTGGAACTTAAGCGACAGCAGCAGCAG
1 CAGCAGCAGCAATTGGAACTTAAGAGACAGCAGCAGCAG
* * *
8055010 CAGCAGCAGCAGTTGGAACTTCAGAGGCAGCAGCAGC
1 CAGCAGCAGCAATTGGAACTTAAGAGACAGCAGCAGC
8055047 TGGAACTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.33, C:0.26, G:0.30, T:0.11
Consensus pattern (39 bp):
CAGCAGCAGCAATTGGAACTTAAGAGACAGCAGCAGCAG
Found at i:8055044 original size:24 final size:24
Alignment explanation
Indices: 8055007--8055176 Score: 162
Period size: 24 Copynumber: 6.7 Consensus size: 24
8054997 ACAGCAGCAG
* *
8055007 CAGCAGCAGCAGCAGTTGGAACTT
1 CAGCGGCAGCAGCAGCTGGAACTT
*
8055031 CAGAGGCAGCAGCAGCTGGAACTT
1 CAGCGGCAGCAGCAGCTGGAACTT
* *
8055055 CAGCGGCAACAGCAGCAACTGGAACTA
1 CAGCGG---CAGCAGCAGCTGGAACTT
* *
8055082 CAGCGGCAGCAGCAGCTAG-AGTT
1 CAGCGGCAGCAGCAGCTGGAACTT
* *
8055105 ACAGCGGCAGCAGCAGTTGGAACTA
1 -CAGCGGCAGCAGCAGCTGGAACTT
8055130 CAGCTGCAGCAGCAGCAGCAGTTGGAACTT
1 CAGC-G--GCAGCAGCAGC---TGGAACTT
8055160 CAGCGGCAGCAGCAGCT
1 CAGCGGCAGCAGCAGCT
8055177 TCGTCACCAC
Statistics
Matches: 119, Mismatches: 16, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
23 2 0.02
24 59 0.50
25 3 0.03
27 43 0.36
29 1 0.01
30 11 0.09
ACGTcount: A:0.29, C:0.27, G:0.31, T:0.12
Consensus pattern (24 bp):
CAGCGGCAGCAGCAGCTGGAACTT
Found at i:8055090 original size:51 final size:51
Alignment explanation
Indices: 8055004--8055175 Score: 181
Period size: 51 Copynumber: 3.3 Consensus size: 51
8054994 GCGACAGCAG
* * *
8055004 CAGCAGCAGCAGCAGCAGTTGGAACTTCAGAGGCAGCAGCAGCTGGAACTT
1 CAGCGGCAGCAGCAGCAGTTGGAACTACAGCGGCAGCAGCAGCTGGAACTT
* ** * *
8055055 CAGCGGCAACAGCAGCAACTGGAACTACAGCGGCAGCAGCAGCTAG-AGTT
1 CAGCGGCAGCAGCAGCAGTTGGAACTACAGCGGCAGCAGCAGCTGGAACTT
8055105 ACAGC-G--GCAGCAGCAGTTGGAACTACAGCTGCAGCAGCAGCAGCAGTTGGAACTT
1 -CAGCGGCAGCAGCAGCAGTTGGAACTACAGC-G--GCAGCAGCAGC---TGGAACTT
8055160 CAGCGGCAGCAGCAGC
1 CAGCGGCAGCAGCAGC
8055176 TTCGTCACCA
Statistics
Matches: 97, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
48 20 0.21
49 1 0.01
50 4 0.04
51 54 0.56
54 6 0.06
55 4 0.04
57 8 0.08
ACGTcount: A:0.30, C:0.27, G:0.31, T:0.12
Consensus pattern (51 bp):
CAGCGGCAGCAGCAGCAGTTGGAACTACAGCGGCAGCAGCAGCTGGAACTT
Found at i:8058118 original size:3 final size:3
Alignment explanation
Indices: 8058110--8058144 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8058100 AATTGAGGGT
8058110 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8058145 TATAAATGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8058516 original size:25 final size:24
Alignment explanation
Indices: 8058503--8058550 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
8058493 GTACGTTATT
*
8058503 TTTTGTGTTTATGTTTTATAATTAA
1 TTTTGTGTTTATGTTGTATAATT-A
*
8058528 TTTTGTGTTTATGTTTTATAATT
1 TTTTGTGTTTATGTTGTATAATT
8058551 GATTAAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (24 bp):
TTTTGTGTTTATGTTGTATAATTA
Found at i:8065243 original size:30 final size:30
Alignment explanation
Indices: 8065058--8065249 Score: 81
Period size: 30 Copynumber: 6.4 Consensus size: 30
8065048 TCATCGGCTA
* * * *
8065058 ATGAAAAGGGATAACTTTGGCTATCAAAATA
1 ATGAAAAGGGATAGCTTCGACTATC-AAATT
* *
8065089 ATGAAAAGGGATAGCCTCAACTATCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCAAATT
* * * *
8065119 ATGAAAAAGGGAT-GGTGAC-ACCATC-AATA
1 ATG-AAAAGGGATAGCT-TCGACTATCAAATT
* * * *
8065148 ATGAAATGGGAT-GGTGAT-GACCATCAAA-C
1 ATGAAAAGGGATAGCT--TCGACTATCAAATT
** * ** * *
8065177 ATTGAAAACAGATAGCTTTGGTTATCGATTT
1 A-TGAAAAGGGATAGCTTCGACTATCAAATT
*
8065208 GTGAAAAGGGATAGCTTCGACTATCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCAAATT
*
8065238 ATGAAAGGGGAT
1 ATGAAAAGGGAT
8065250 GGTGACGACC
Statistics
Matches: 117, Mismatches: 35, Indels: 19
0.68 0.20 0.11
Matches are distributed among these distances:
28 11 0.09
29 14 0.12
30 60 0.51
31 32 0.27
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGACTATCAAATT
Found at i:8065261 original size:119 final size:119
Alignment explanation
Indices: 8065090--8065313 Score: 333
Period size: 119 Copynumber: 1.9 Consensus size: 119
8065080 ATCAAAATAA
* *
8065090 TGAAAAGGGATAGCCTCAACTATCAAATTATGAAAAAGGGATGGTGACACCATCAATAATGAAAT
1 TGAAAAGGGATAGCCTCAACTATCAAATTATGAAAAAGGGATGGTGACACCATCAACAATGAAAA
* *
8065155 GGGATGGTGATGACCATCAAACATTGAAAACAGATAGCTTTGGTTATCGATTTG
66 AGGATGGTGATGACCATCAAACAATGAAAACAGATAGCTTTGGTTATCGATTTG
* * *
8065209 TGAAAAGGGATAGCTTCGACTATCAAATTATG-AAAGGGGATGGTGACGACCATCAACAATGAAA
1 TGAAAAGGGATAGCCTCAACTATCAAATTATGAAAAAGGGATGGTGAC-ACCATCAACAATGAAA
* * **
8065273 AAGGATGGTGATGCCCATCAAATAATGAAAAGGGATAGCTT
65 AAGGATGGTGATGACCATCAAACAATGAAAACAGATAGCTT
8065314 CGGCTATTGA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
118 14 0.15
119 79 0.85
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.23
Consensus pattern (119 bp):
TGAAAAGGGATAGCCTCAACTATCAAATTATGAAAAAGGGATGGTGACACCATCAACAATGAAAA
AGGATGGTGATGACCATCAAACAATGAAAACAGATAGCTTTGGTTATCGATTTG
Found at i:8065264 original size:30 final size:29
Alignment explanation
Indices: 8065225--8065308 Score: 89
Period size: 29 Copynumber: 2.8 Consensus size: 29
8065215 GGGATAGCTT
* *
8065225 CGACTATCAAATTATGAAAGGGGATGGTGA
1 CGACCATCAAA-TATGAAAAGGGATGGTGA
*
8065255 CGACCATCAACA-ATGAAAAAGGATGGTGA
1 CGACCATCAA-ATATGAAAAGGGATGGTGA
* *
8065284 TGCCCATCAAATAATGAAAAGGGAT
1 CGACCATCAAAT-ATGAAAAGGGAT
8065309 AGCTTCGGCT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
28 1 0.02
29 23 0.51
30 20 0.44
31 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (29 bp):
CGACCATCAAATATGAAAAGGGATGGTGA
Found at i:8065270 original size:29 final size:30
Alignment explanation
Indices: 8065238--8065308 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
8065228 CTATCAAATT
*
8065238 ATGAAAGGGGATGGTGACGACCATC-AACA
1 ATGAAAAGGGATGGTGACGACCATCAAACA
* * * *
8065267 ATGAAAAAGGATGGTGATGCCCATCAAATA
1 ATGAAAAGGGATGGTGACGACCATCAAACA
8065297 ATGAAAAGGGAT
1 ATGAAAAGGGAT
8065309 AGCTTCGGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
29 21 0.60
30 14 0.40
ACGTcount: A:0.42, C:0.13, G:0.28, T:0.17
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCAAACA
Found at i:8065338 original size:119 final size:119
Alignment explanation
Indices: 8065091--8065350 Score: 315
Period size: 119 Copynumber: 2.2 Consensus size: 119
8065081 TCAAAATAAT
* * **
8065091 GAAAAGGGATAGCCTCAACTATCAAATTATGAAAAAGGGATGGTGACACCATCAATAATGAAATG
1 GAAAAGGGATAGCTTCAACTATCAAATTATGAAAAAGGGATGGTGACACCATCAACAATGAAAAA
* * * *** *
8065156 GGATGGTGATGACCATCAAACATTGAAAACAGATAGCTTTGGTTATCGATTTGT
66 GGATGGTGATGACCATCAAACAATGAAAACAGATAGCTTCGGCTATCGAGCAGG
* *
8065210 GAAAAGGGATAGCTTCGACTATCAAATTATG-AAAGGGGATGGTGACGACCATCAACAATGAAAA
1 GAAAAGGGATAGCTTCAACTATCAAATTATGAAAAAGGGATGGTGAC-ACCATCAACAATGAAAA
* * ** *
8065274 AGGATGGTGATGCCCATCAAATAATGAAAAGGGATAGCTTCGGCTATTGAGCAGG
65 AGGATGGTGATGACCATCAAACAATGAAAACAGATAGCTTCGGCTATCGAGCAGG
* * *
8065329 GAAATGGGATAACTTCAGCTAT
1 GAAAAGGGATAGCTTCAACTAT
8065351 TGAGCTATGA
Statistics
Matches: 118, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
118 14 0.12
119 104 0.88
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (119 bp):
GAAAAGGGATAGCTTCAACTATCAAATTATGAAAAAGGGATGGTGACACCATCAACAATGAAAAA
GGATGGTGATGACCATCAAACAATGAAAACAGATAGCTTCGGCTATCGAGCAGG
Found at i:8065350 original size:30 final size:30
Alignment explanation
Indices: 8065299--8065355 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8065289 ATCAAATAAT
* *
8065299 GAAAAGGGATAGCTTCGGCTATTGAGCAGG
1 GAAAAGGGATAACTTCAGCTATTGAGCAGG
*
8065329 GAAATGGGATAACTTCAGCTATTGAGC
1 GAAAAGGGATAACTTCAGCTATTGAGC
8065356 TATGAAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.23
Consensus pattern (30 bp):
GAAAAGGGATAACTTCAGCTATTGAGCAGG
Found at i:8065360 original size:119 final size:118
Alignment explanation
Indices: 8065091--8065381 Score: 289
Period size: 119 Copynumber: 2.4 Consensus size: 118
8065081 TCAAAATAAT
* * * * * **
8065091 GAAAAGGGATAGCCTCAACTATCAAATTATGAAAAAGGGATGGTGACACCATCAATAATGAAATG
1 GAAAAGGGATAACTTCGACTATCAAACTATG-AAAAGGGATGGTGACACCATCAACAATGAAAAA
* * * *** *
8065156 GGATGGTGATGACCATCAAACATTGAAAACAGATAGCTTTGGTTATCGATTTGT
65 GGATGGTGATGACCATCAAACAATGAAAACAGATAGCTTCGGCTATCGAGCAGG
* * *
8065210 GAAAAGGGATAGCTTCGACTATCAAATTATGAAAGGGGATGGTGACGACCATCAACAATGAAAAA
1 GAAAAGGGATAACTTCGACTATCAAACTATGAAAAGGGATGGTGAC-ACCATCAACAATGAAAAA
* * ** *
8065275 GGATGGTGATGCCCATCAAATAATGAAAAGGGATAGCTTCGGCTATTGAGCAGG
65 GGATGGTGATGACCATCAAACAATGAAAACAGATAGCTTCGGCTATCGAGCAGG
* ** * *
8065329 GAAATGGGATAACTTC-AGCTATTGAGCTATGAAAAGGGTTGGT-ACAACCATCA
1 GAAAAGGGATAACTTCGA-CTATCAAACTATGAAAAGGGATGGTGAC-ACCATCA
8065382 TGACTTTATT
Statistics
Matches: 143, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
118 24 0.17
119 119 0.83
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (118 bp):
GAAAAGGGATAACTTCGACTATCAAACTATGAAAAGGGATGGTGACACCATCAACAATGAAAAAG
GATGGTGATGACCATCAAACAATGAAAACAGATAGCTTCGGCTATCGAGCAGG
Found at i:8071883 original size:58 final size:58
Alignment explanation
Indices: 8071693--8072100 Score: 311
Period size: 58 Copynumber: 7.2 Consensus size: 58
8071683 ACAAAATGGA
* * * ** *
8071693 ATAA-CGATGGTTGTCACCATCCCTTTTCATAGTTGATAGTCATCACCATCCCTTTTC
1 ATAATCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTC
* * * * * * * * * *** * *
8071750 ATAGTCGATAGCCG-AAGCTATCCCTTTTTATAATCGATGGTCGTCACCAT-CCTTTCC
1 ATAATCGATGGTCGTCA-CCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTC
* * * *
8071807 ATAGTTGATAGTCGTCACCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTT
1 ATAATCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTC
* * *
8071865 ATAATCGATGGTCGTCACCATCCCTTTCCATAGTTGATGGCC----C--T---TTTT-
1 ATAATCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTC
* * *
8071913 ATAATCGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCAAAGCTATCCCTTTTC
1 ATAATCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTC
* * * * *
8071971 ATAATCGATGGTCGTCACCATCCCTTTTCATAATCAATAGCCGAAGCTATCGCTTTTC
1 ATAATCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTC
* * * * * *** *
8072029 ATAATCAATGGTCGTCACCATCCTTTTTCATAGTTGATGGTCGTCACCATCCCTTTTC
1 ATAATCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTC
*
8072087 ATAATCGATAGTCG
1 ATAATCGATGGTCG
8072101 AAGGTATCCC
Statistics
Matches: 282, Mismatches: 55, Indels: 27
0.77 0.15 0.07
Matches are distributed among these distances:
48 37 0.13
49 4 0.01
52 2 0.01
54 2 0.01
57 50 0.18
58 187 0.66
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (58 bp):
ATAATCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGCCAAAACTATCCCTTTTC
Found at i:8071904 original size:29 final size:29
Alignment explanation
Indices: 8071705--8071898 Score: 194
Period size: 29 Copynumber: 6.7 Consensus size: 29
8071695 AACGATGGTT
*
8071705 GTCACCATCCCTTTTCATAGTTGATAGTC
1 GTCACCATCCCTTTTCATAGTCGATAGTC
* *
8071734 ATCACCATCCCTTTTCATAGTCGATAGCC
1 GTCACCATCCCTTTTCATAGTCGATAGTC
* * * * *
8071763 G-AAGCTATCCCTTTTTATAATCGATGGTC
1 GTCA-CCATCCCTTTTCATAGTCGATAGTC
* *
8071792 GTCACCAT-CCTTTCCATAGTTGATAGTC
1 GTCACCATCCCTTTTCATAGTCGATAGTC
*
8071820 GTCACCATCCCTTTTCATAGTCGATAGCC
1 GTCACCATCCCTTTTCATAGTCGATAGTC
*** * * * *
8071849 AAAACTATCCCTTTTTATAATCGATGGTC
1 GTCACCATCCCTTTTCATAGTCGATAGTC
*
8071878 GTCACCATCCCTTTCCATAGT
1 GTCACCATCCCTTTTCATAGT
8071899 TGATGGCCCT
Statistics
Matches: 127, Mismatches: 35, Indels: 6
0.76 0.21 0.04
Matches are distributed among these distances:
28 24 0.19
29 102 0.80
30 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (29 bp):
GTCACCATCCCTTTTCATAGTCGATAGTC
Found at i:8071947 original size:29 final size:29
Alignment explanation
Indices: 8071905--8072100 Score: 216
Period size: 29 Copynumber: 6.8 Consensus size: 29
8071895 TAGTTGATGG
*
8071905 CCCTTTTTATAATCGATGGTCGTCACCAT
1 CCCTTTTCATAATCGATGGTCGTCACCAT
* ** *
8071934 CCCTTTTCATAATCGATAGTC-AAAGCTAT
1 CCCTTTTCATAATCGATGGTCGTCA-CCAT
8071963 CCCTTTTCATAATCGATGGTCGTCACCAT
1 CCCTTTTCATAATCGATGGTCGTCACCAT
* * * * *
8071992 CCCTTTTCATAATCAATAGCCG-AAGCTAT
1 CCCTTTTCATAATCGATGGTCGTCA-CCAT
* *
8072021 CGCTTTTCATAATCAATGGTCGTCACCAT
1 CCCTTTTCATAATCGATGGTCGTCACCAT
* * *
8072050 CCTTTTTCATAGTTGATGGTCGTCACCAT
1 CCCTTTTCATAATCGATGGTCGTCACCAT
*
8072079 CCCTTTTCATAATCGATAGTCG
1 CCCTTTTCATAATCGATGGTCG
8072101 AAGGTATCCC
Statistics
Matches: 135, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.01
29 131 0.97
30 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (29 bp):
CCCTTTTCATAATCGATGGTCGTCACCAT
Found at i:8072059 original size:87 final size:87
Alignment explanation
Indices: 8071961--8072120 Score: 257
Period size: 87 Copynumber: 1.8 Consensus size: 87
8071951 AGTCAAAGCT
*
8071961 ATCCCTTTTCATAATCGATGGTCGTCACCATCCCTTTTCATAATCAATAGCCGAAGCTATCGCTT
1 ATCCCTTTTCATAATCGATGGTCGTCACCATCCCTTTTCATAATCAATAGCCGAAGCTATCCCTT
8072026 TTCATAATCAATGGTCGTCACC
66 TTCATAATCAATGGTCGTCACC
* * * * * *
8072048 ATCCTTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCGAAGGTATCCCTT
1 ATCCCTTTTCATAATCGATGGTCGTCACCATCCCTTTTCATAATCAATAGCCGAAGCTATCCCTT
8072113 TTCATAAT
66 TTCATAAT
8072121 TGATGATTGT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 66 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.36
Consensus pattern (87 bp):
ATCCCTTTTCATAATCGATGGTCGTCACCATCCCTTTTCATAATCAATAGCCGAAGCTATCCCTT
TTCATAATCAATGGTCGTCACC
Found at i:8077083 original size:16 final size:15
Alignment explanation
Indices: 8077054--8077103 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
8077044 AAGTGATCTT
8077054 TAGATGTG-AAATTA
1 TAGATGTGAAAATTA
8077068 TAGACTGTGAAAATTA
1 TAGA-TGTGAAAATTA
* *
8077084 TATATTGTGAAAACTA
1 TAGA-TGTGAAAATTA
8077100 TAGA
1 TAGA
8077104 ATACTATAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 4 0.13
15 4 0.13
16 22 0.73
ACGTcount: A:0.44, C:0.04, G:0.18, T:0.34
Consensus pattern (15 bp):
TAGATGTGAAAATTA
Found at i:8077554 original size:29 final size:29
Alignment explanation
Indices: 8077521--8077611 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
8077511 TGGAACTATA
8077521 GTTGAGAGACTTTGTTCGAGTTGTTAATG
1 GTTGAGAGACTTTGTTCGAGTTGTTAATG
* * *
8077550 GTTGAGAGATTTTGTTCGACTGGTTAATG
1 GTTGAGAGACTTTGTTCGAGTTGTTAATG
* *
8077579 GTTGAGAGACTTTGTTCGAGTTGCTAATA
1 GTTGAGAGACTTTGTTCGAGTTGTTAATG
8077608 GTTG
1 GTTG
8077612 TGGCACCATT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.21, C:0.08, G:0.31, T:0.41
Consensus pattern (29 bp):
GTTGAGAGACTTTGTTCGAGTTGTTAATG
Found at i:8098886 original size:13 final size:13
Alignment explanation
Indices: 8098868--8098892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8098858 TTTGTTGTTG
8098868 TTTTTATTTTTAC
1 TTTTTATTTTTAC
8098881 TTTTTATTTTTA
1 TTTTTATTTTTA
8098893 AGCATGAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTATTTTTAC
Found at i:8107141 original size:50 final size:50
Alignment explanation
Indices: 8107054--8107190 Score: 175
Period size: 50 Copynumber: 2.7 Consensus size: 50
8107044 GGGAATCAGA
* * **
8107054 TCCCATGTAAAACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAAACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * *
8107104 TCCCCCGTAAAACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAAACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * * *
8107154 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCACGTAAAACCATGTCTGGGACATGGCATTGGCA
8107191 GTACAAGAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (50 bp):
TCCCACGTAAAACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
Found at i:8110778 original size:29 final size:29
Alignment explanation
Indices: 8110745--8110802 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
8110735 AAAGATAAAA
8110745 GAGAAATCGACAAAGTAGGTATAACTTGC
1 GAGAAATCGACAAAGTAGGTATAACTTGC
8110774 GAGAAATCGACAAAGTAGGTATAACTTGC
1 GAGAAATCGACAAAGTAGGTATAACTTGC
8110803 TACAACAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (29 bp):
GAGAAATCGACAAAGTAGGTATAACTTGC
Found at i:8116866 original size:13 final size:13
Alignment explanation
Indices: 8116835--8116872 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8116825 GTTAATGAAA
*
8116835 TATTAAAAATGAAT
1 TATTAAATAT-AAT
8116849 T-TTAAATATAAT
1 TATTAAATATAAT
8116861 TATTAAATATAA
1 TATTAAATATAA
8116873 ATTTATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 4 0.18
13 17 0.77
14 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (13 bp):
TATTAAATATAAT
Found at i:8144825 original size:24 final size:25
Alignment explanation
Indices: 8144788--8144852 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 25
8144778 ATTTTTAATA
*
8144788 TTTTTATAAATATATAT-TT-ACTT
1 TTTTTATAAATATATATATTAAATT
*
8144811 TTTTTATAATTTATATATATTAAATT
1 TTTTTATAA-ATATATATATTAAATT
8144837 TTTTTA-AAATA-ATATA
1 TTTTTATAAATATATATA
8144853 AAAATTATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 14 0.39
24 9 0.25
25 4 0.11
26 9 0.25
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTTTATAAATATATATATTAAATT
Found at i:8144884 original size:19 final size:19
Alignment explanation
Indices: 8144840--8144886 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
8144830 TTAAATTTTT
8144840 TTAAAATA-A-TATAAAAA
1 TTAAAATACATTATAAAAA
**
8144857 TTATGATACATTATAAAAA
1 TTAAAATACATTATAAAAA
8144876 TTAAAATACAT
1 TTAAAATACAT
8144887 AAAAATACTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 17 0.71
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (19 bp):
TTAAAATACATTATAAAAA
Found at i:8147065 original size:21 final size:21
Alignment explanation
Indices: 8147020--8147068 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
8147010 AAATTATGAT
* **
8147020 ATGATATTATACAATCAAATG
1 ATGATATTACACAATCAAACA
*
8147041 ATGATATTACACAATTAAACA
1 ATGATATTACACAATCAAACA
8147062 ATGATAT
1 ATGATAT
8147069 GATAGTTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (21 bp):
ATGATATTACACAATCAAACA
Found at i:8147161 original size:2 final size:2
Alignment explanation
Indices: 8147154--8147181 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8147144 GAATTGTAAA
8147154 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8147182 GTTTAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8171504 original size:50 final size:50
Alignment explanation
Indices: 8171450--8171546 Score: 178
Period size: 50 Copynumber: 1.9 Consensus size: 50
8171440 TTATATTGAA
8171450 TTTTTATTTGATAATTTTATTAATT-ATATGAATAGTTAAGTACAAGTGGT
1 TTTTTATTTGATAATTTTATTAATTGA-ATGAATAGTTAAGTACAAGTGGT
8171500 TTTTTATTTGATAATTTTATTAATTGAATGAATAGTTAAGTACAAGT
1 TTTTTATTTGATAATTTTATTAATTGAATGAATAGTTAAGTACAAGT
8171547 TATTTGTCCC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 45 0.98
51 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.49
Consensus pattern (50 bp):
TTTTTATTTGATAATTTTATTAATTGAATGAATAGTTAAGTACAAGTGGT
Found at i:8172668 original size:15 final size:16
Alignment explanation
Indices: 8172650--8172682 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8172640 TGGTAAGCAA
8172650 TTAAATG-AATTAAGT
1 TTAAATGTAATTAAGT
8172665 TTAAATGTTAATTAAGT
1 TTAAATG-TAATTAAGT
8172682 T
1 T
8172683 AAAGGTTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (16 bp):
TTAAATGTAATTAAGT
Found at i:8172690 original size:16 final size:17
Alignment explanation
Indices: 8172657--8172690 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8172647 CAATTAAATG
*
8172657 AATTAAGTTTAAATGTT
1 AATTAAGTTTAAAGGTT
8172674 AATTAAG-TTAAAGGTT
1 AATTAAGTTTAAAGGTT
8172690 A
1 A
8172691 CGTTTGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (17 bp):
AATTAAGTTTAAAGGTT
Found at i:8173202 original size:13 final size:13
Alignment explanation
Indices: 8173184--8173227 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
8173174 AATGTGTAAA
*
8173184 ATGAAATGGTTAT
1 ATGAAATGGATAT
*
8173197 ATGAAATAGATAT
1 ATGAAATGGATAT
* *
8173210 GTGAAATGGCTAT
1 ATGAAATGGATAT
8173223 ATGAA
1 ATGAA
8173228 TCAATTATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.23, T:0.32
Consensus pattern (13 bp):
ATGAAATGGATAT
Found at i:8178779 original size:13 final size:13
Alignment explanation
Indices: 8178761--8178786 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8178751 TCAATAAAGT
8178761 TCAATTACAATGG
1 TCAATTACAATGG
8178774 TCAATTACAATGG
1 TCAATTACAATGG
8178787 GCCAAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TCAATTACAATGG
Found at i:8188625 original size:18 final size:17
Alignment explanation
Indices: 8188597--8188631 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8188587 AATTATAAGA
*
8188597 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8188614 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8188632 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8199205 original size:18 final size:18
Alignment explanation
Indices: 8199166--8199205 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
8199156 TTACAGCATC
*
8199166 TTTTTTTATAATTTTCAT
1 TTTTTTTAAAATTTTCAT
8199184 TTTTCTTTAAAATTTTCAT
1 TTTT-TTTAAAATTTTCAT
8199203 TTT
1 TTT
8199206 AAATTATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTTTAAAATTTTCAT
Found at i:8202142 original size:19 final size:19
Alignment explanation
Indices: 8202106--8202145 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
8202096 TGAAATTAAT
8202106 ATTAACTAAATGCAAATGA
1 ATTAACTAAATGCAAATGA
8202125 ATTAATCTAAATGC-AATGA
1 ATTAA-CTAAATGCAAATGA
8202144 AT
1 AT
8202146 GAAATGAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (19 bp):
ATTAACTAAATGCAAATGA
Found at i:8211760 original size:9 final size:9
Alignment explanation
Indices: 8211746--8211770 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8211736 AGGAACTTTC
8211746 TCAATTAAT
1 TCAATTAAT
8211755 TCAATTAAT
1 TCAATTAAT
8211764 TCAATTA
1 TCAATTA
8211771 GCGTACTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (9 bp):
TCAATTAAT
Found at i:8213726 original size:16 final size:17
Alignment explanation
Indices: 8213694--8213726 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8213684 AATTCAGTCA
8213694 AAAATTCATAATTTTGC
1 AAAATTCATAATTTTGC
*
8213711 AAAATT-ATACTTTTGC
1 AAAATTCATAATTTTGC
8213727 CCCTAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
AAAATTCATAATTTTGC
Found at i:8224500 original size:69 final size:69
Alignment explanation
Indices: 8224424--8224558 Score: 173
Period size: 69 Copynumber: 2.0 Consensus size: 69
8224414 TGCTAGTCGA
* * * * * * *
8224424 ATAAACCGACAAATGTATGCCCAGCACTGGTTAAATAAACTGATGGAAGTT-CTGCCCAGCGCTA
1 ATAAACCGAAAAATATATGCCCAGCACTAGTCAAATAAACTGACGAAAGTTGC-ACCCAGCGCTA
8224488 GTATG
65 GTATG
* *
8224493 ATAAACCGAAAAATATGTGCCCAGCACTAGTCAGATAAACTGACGAAAGTTGCACCCAGCGCTAG
1 ATAAACCGAAAAATATATGCCCAGCACTAGTCAAATAAACTGACGAAAGTTGCACCCAGCGCTAG
8224558 T
66 T
8224559 CAGACAAACT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
69 55 0.98
70 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (69 bp):
ATAAACCGAAAAATATATGCCCAGCACTAGTCAAATAAACTGACGAAAGTTGCACCCAGCGCTAG
TATG
Found at i:8224597 original size:39 final size:37
Alignment explanation
Indices: 8224499--8224597 Score: 105
Period size: 35 Copynumber: 2.7 Consensus size: 37
8224489 TATGATAAAC
* *
8224499 CGAAAAATATGTGCCCAGCACTAGTCAGATAAACTGA
1 CGAAAAATATGAGCCCAGCACTAGTCAGACAAACTGA
* *
8224536 CG-AAAGT-TGCA-CCCAGCGCTAGTCAGACAAACTGA
1 CGAAAAATATG-AGCCCAGCACTAGTCAGACAAACTGA
*
8224571 CGAATAAATAGTGAGCCCAGCTCTAGT
1 CGAA-AAATA-TGAGCCCAGCACTAGT
8224598 TGGACATACC
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
35 26 0.52
36 5 0.10
37 5 0.10
38 1 0.02
39 13 0.26
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.18
Consensus pattern (37 bp):
CGAAAAATATGAGCCCAGCACTAGTCAGACAAACTGA
Found at i:8225046 original size:18 final size:18
Alignment explanation
Indices: 8225023--8225082 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 18
8225013 TACTTTTACC
8225023 CTCAACAATTGACATTTA
1 CTCAACAATTGACATTTA
8225041 CTCAAC--TT-A-ATGCTTA
1 CTCAACAATTGACAT--TTA
8225057 CCCTCAACAATTGACATTTA
1 --CTCAACAATTGACATTTA
8225077 CTCAAC
1 CTCAAC
8225083 TTAATGCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 16
0.68 0.00 0.32
Matches are distributed among these distances:
14 2 0.06
15 1 0.03
16 5 0.15
18 18 0.53
20 5 0.15
21 1 0.03
22 2 0.06
ACGTcount: A:0.35, C:0.28, G:0.05, T:0.32
Consensus pattern (18 bp):
CTCAACAATTGACATTTA
Found at i:8225059 original size:36 final size:36
Alignment explanation
Indices: 8225018--8225092 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
8225008 ATTTATACTT
8225018 TTACCCTCAACAATTGACATTTACTCAACTTAATGC
1 TTACCCTCAACAATTGACATTTACTCAACTTAATGC
8225054 TTACCCTCAACAATTGACATTTACTCAACTTAATGC
1 TTACCCTCAACAATTGACATTTACTCAACTTAATGC
8225090 TTA
1 TTA
8225093 ATATCAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (36 bp):
TTACCCTCAACAATTGACATTTACTCAACTTAATGC
Found at i:8227561 original size:19 final size:19
Alignment explanation
Indices: 8227537--8227629 Score: 132
Period size: 19 Copynumber: 4.8 Consensus size: 19
8227527 AATCATATCT
*
8227537 TCCAAGATTGCATATCTTA
1 TCCAAGATTGCATATCATA
*
8227556 TCCAAGATTGCATATCTTA
1 TCCAAGATTGCATATCATA
8227575 TCCAAGATTGCATATATCATA
1 TCCAAGATTGC--ATATCATA
*
8227596 TCTAAGATTGCATATCATA
1 TCCAAGATTGCATATCATA
*
8227615 TCTAAGATTGCATAT
1 TCCAAGATTGCATAT
8227630 TCTTGAAGAT
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
19 53 0.76
21 17 0.24
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (19 bp):
TCCAAGATTGCATATCATA
Found at i:8227603 original size:40 final size:39
Alignment explanation
Indices: 8227530--8227629 Score: 134
Period size: 40 Copynumber: 2.6 Consensus size: 39
8227520 ATTACAAAAT
*
8227530 CATATCT-TCCAAGATTGC--ATATCTTATCCAAGATTG
1 CATATCTATCCAAGATTGCATATATCATATCCAAGATTG
*
8227566 CATATCTTATCCAAGATTGCATATATCATATCTAAGATTG
1 CATATC-TATCCAAGATTGCATATATCATATCCAAGATTG
*
8227606 CATATCATATCTAAGATTGCATAT
1 CATATC-TATCCAAGATTGCATAT
8227630 TCTTGAAGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
36 6 0.11
37 1 0.02
38 11 0.20
40 38 0.68
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37
Consensus pattern (39 bp):
CATATCTATCCAAGATTGCATATATCATATCCAAGATTG
Found at i:8238143 original size:24 final size:25
Alignment explanation
Indices: 8238111--8238160 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
8238101 AAGTTGATAG
8238111 TAAGAAATGCA-TTTTTTTGCCATC
1 TAAGAAATGCACTTTTTTTGCCATC
8238135 TAAGAAATGCATCTTTTTTTGCCATC
1 TAAGAAATGCA-CTTTTTTTGCCATC
8238161 ATCAAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.46
26 13 0.54
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (25 bp):
TAAGAAATGCACTTTTTTTGCCATC
Found at i:8238782 original size:22 final size:22
Alignment explanation
Indices: 8238756--8238797 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8238746 TTAAAGGAGA
* *
8238756 CATAATTATTCAAATAATATCT
1 CATAACTATACAAATAATATCT
*
8238778 CATAACTATACAAGTAATAT
1 CATAACTATACAAATAATAT
8238798 TACTTGTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (22 bp):
CATAACTATACAAATAATATCT
Found at i:8242872 original size:10 final size:10
Alignment explanation
Indices: 8242850--8242879 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
8242840 TGTTGAAATT
8242850 TTTAATATTTA
1 TTTAAT-TTTA
8242861 TTTAATTTTA
1 TTTAATTTTA
8242871 TTTAATTTT
1 TTTAATTTT
8242880 TTTGTTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.68
11 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTAATTTTA
Found at i:8245650 original size:28 final size:28
Alignment explanation
Indices: 8245604--8245729 Score: 180
Period size: 28 Copynumber: 4.5 Consensus size: 28
8245594 TGACTTTCGA
*
8245604 CACTAAGTGTGCGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
8245632 CACTAAGTGTACGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* *
8245660 CACTAAGTGTGCGAGTTTAATGGCAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * **
8245688 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
8245716 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
8245730 ACTTATTAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 87 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:8252732 original size:28 final size:28
Alignment explanation
Indices: 8252692--8252817 Score: 164
Period size: 28 Copynumber: 4.5 Consensus size: 28
8252682 TGACTTTCGA
*
8252692 CACTAAGTGTGCGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
8252720 CACTACGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* *
8252748 CACTAAGTGTGCCG-GTTTAATGGCAAAG
1 CACTAAGTGTG-CGAGTTTAATTGTAAAG
* * **
8252776 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
8252804 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
8252818 ACTCATTAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
27 2 0.02
28 81 0.95
29 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:8253617 original size:70 final size:69
Alignment explanation
Indices: 8253529--8254025 Score: 613
Period size: 70 Copynumber: 7.1 Consensus size: 69
8253519 ATGTTCATGT
* * * *
8253529 AATTTTTATGCTTAAATGCTGTCCAATTTATTGTATTTATACTGCCCAAATTGTTGTATATATGC
1 AATTTTTATG-TAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
8253594 TGTCC
65 TGTCC
* * * * *
8253599 AATTTTGATGTGAAAATGCTG-CTCAATTTGGTATATATATGCTGCCCAAATTGTTGCACATATG
1 AATTTTTATGT-AAAATGCTGTC-CAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATG
* *
8253663 CTATCA
64 CTGTCC
* *
8253669 AATTTTTATGCTAAAATGATGTCCAATTTGTTGTATTTATGCTGCCCAAATTGGTGCATATATGC
1 AATTTTTATG-TAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
*
8253734 TGTCA
65 TGTCC
* * *
8253739 AATTTTTATGCTAAAATGTTGTCCAATTCGTTGTATTTATGATGCCCAAATTGTTGCATATATGC
1 AATTTTTATG-TAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
8253804 TGTCC
65 TGTCC
* * *
8253809 AATTTTTATGCTTAAATGCTGCCCAATTTATTGTATTTATGCTGCCCAAATTGTTGCATATATGC
1 AATTTTTATG-TAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
*
8253874 TGTCT
65 TGTCC
* * *
8253879 AATTTTTATGCCT-AAATGCTGCCCAAATTGTTGTATTTATGCTGCCCAAATTGTTGTATATATG
1 AATTTTTATG--TAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATG
*
8253943 CTTTCC
64 CTGTCC
* * * *
8253949 AATTTTGATGTAAAAATGCTGCTCC-ATTTGATGTATATATGCTGCCCAAATTGTTGTATATATG
1 AATTTTTATGT-AAAATGCTG-TCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATG
*
8254013 CTATCC
64 CTGTCC
8254019 AATTTTT
1 AATTTTT
8254026 GGTGTCAAAA
Statistics
Matches: 376, Mismatches: 43, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
68 1 0.00
69 2 0.01
70 367 0.98
71 6 0.02
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (69 bp):
AATTTTTATGTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGCT
GTCC
Found at i:8253650 original size:24 final size:24
Alignment explanation
Indices: 8253544--8254014 Score: 187
Period size: 23 Copynumber: 20.2 Consensus size: 24
8253534 TTATGCTTAA
* *
8253544 ATGCTGTCC-AATTT-ATTGTATTT
1 ATGCTGCCCAAATTTGA-TGTATAT
* *
8253567 ATACTGCCCAAA-TTGTTGTATAT
1 ATGCTGCCCAAATTTGATGTATAT
* * *
8253590 ATGCTGTCCAATTTTGATGTGA-AA
1 ATGCTGCCCAAATTTGATGT-ATAT
* * *
8253614 ATGCTGCTC-AATTTGGTATATAT
1 ATGCTGCCCAAATTTGATGTATAT
* * *
8253637 ATGCTGCCCAAA-TTGTTGCACAT
1 ATGCTGCCCAAATTTGATGTATAT
** * *
8253660 ATGCT-ATCAAATTTTTATGCTA-AA
1 ATGCTGCCCAAA-TTTGATG-TATAT
* * * *
8253684 ATGATGTCC-AATTTGTTGTATTT
1 ATGCTGCCCAAATTTGATGTATAT
* *
8253707 ATGCTGCCCAAA-TTGGTGCATAT
1 ATGCTGCCCAAATTTGATGTATAT
* * *
8253730 ATGCTG-TCAAATTTTTATGCTA-AA
1 ATGCTGCCCAAA-TTTGATG-TATAT
* * * * *
8253754 ATGTTGTCC-AATTCGTTGTATTT
1 ATGCTGCCCAAATTTGATGTATAT
* * *
8253777 ATGATGCCCAAA-TTGTTGCATAT
1 ATGCTGCCCAAATTTGATGTATAT
* * * *
8253800 ATGCTGTCCAATTTTTATGCT-TAA
1 ATGCTGCCCAAATTTGATG-TATAT
*
8253824 ATGCTGCCC-AATTT-ATTGTATTT
1 ATGCTGCCCAAATTTGA-TGTATAT
* *
8253847 ATGCTGCCCAAA-TTGTTGCATAT
1 ATGCTGCCCAAATTTGATGTATAT
* * * * ** *
8253870 ATGCTGTCTAATTTTTATGCCTAA
1 ATGCTGCCCAAATTTGATGTATAT
* *
8253894 ATGCTGCCCAAA-TTGTTGTATTT
1 ATGCTGCCCAAATTTGATGTATAT
*
8253917 ATGCTGCCCAAA-TTGTTGTATAT
1 ATGCTGCCCAAATTTGATGTATAT
** * * *
8253940 ATGCTTTCCAATTTTGATGTAAAA
1 ATGCTGCCCAAATTTGATGTATAT
8253964 ATGCTGCTCC--ATTTGATGTATAT
1 ATGCTGC-CCAAATTTGATGTATAT
*
8253987 ATGCTGCCCAAA-TTGTTGTATAT
1 ATGCTGCCCAAATTTGATGTATAT
8254010 ATGCT
1 ATGCT
8254015 ATCCAATTTT
Statistics
Matches: 321, Mismatches: 98, Indels: 58
0.67 0.21 0.12
Matches are distributed among these distances:
22 17 0.05
23 206 0.64
24 91 0.28
25 7 0.02
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (24 bp):
ATGCTGCCCAAATTTGATGTATAT
Found at i:8258211 original size:22 final size:22
Alignment explanation
Indices: 8258184--8258225 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8258174 TATTTCAGTT
* *
8258184 TACAGATATTAAGTTTATTTTC
1 TACAGAAATAAAGTTTATTTTC
8258206 TACAGAAATAAAGTTTATTT
1 TACAGAAATAAAGTTTATTT
8258226 GGTTTATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (22 bp):
TACAGAAATAAAGTTTATTTTC
Found at i:8258479 original size:30 final size:28
Alignment explanation
Indices: 8258435--8258589 Score: 73
Period size: 28 Copynumber: 5.2 Consensus size: 28
8258425 TTTTGTTAAG
*
8258435 TTTTTATAATTTTTTCTTGAACTTTTATAC
1 TTTTTATTA-TTTTTCTT-AACTTTTATAC
* *
8258465 TTTATTATTATTTTTC-TAATGTTTTATAA
1 TTT-TTATTATTTTTCTTAA-CTTTTATAC
* *** ** * *
8258494 TTTTTATAATAAAT-TTATTTTTTAAAAG
1 TTTTTATTATTTTTCTTAACTTTT-ATAC
8258522 TTTTTATATAATTTTTTCTTGAACTTTTATAC
1 TTTTTAT-T-A-TTTTTCTT-AACTTTTATAC
* *
8258554 TTTATTATTATTTTTC-TAATGTTTTATAA
1 TTT-TTATTATTTTTCTTAA-CTTTTATAC
8258583 TTTTTAT
1 TTTTTAT
8258590 AATAAATTTA
Statistics
Matches: 93, Mismatches: 21, Indels: 24
0.67 0.15 0.17
Matches are distributed among these distances:
27 4 0.04
28 26 0.28
29 22 0.24
30 16 0.17
31 8 0.09
32 8 0.09
33 9 0.10
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (28 bp):
TTTTTATTATTTTTCTTAACTTTTATAC
Found at i:8258495 original size:50 final size:50
Alignment explanation
Indices: 8258436--8258587 Score: 157
Period size: 50 Copynumber: 3.3 Consensus size: 50
8258426 TTTGTTAAGT
8258436 TTTTATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATG
1 TTTTATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATG
** * ** *
8258486 TTTTATAATTTTTATAAT-AA-ATTTAT--TTT-TTAAAAGTTTT-T-A--
1 TTTTATAATTTTT-TCTTGAACTTTTATACTTTATTATTATTTTTCTAATG
8258528 ---TATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATG
1 TTTTATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATG
8258575 TTTTATAATTTTT
1 TTTTATAATTTTT
8258588 ATAATAAATT
Statistics
Matches: 77, Mismatches: 12, Indels: 26
0.67 0.10 0.23
Matches are distributed among these distances:
38 2 0.03
39 12 0.16
40 5 0.06
42 3 0.04
43 8 0.10
44 2 0.03
45 2 0.03
46 8 0.10
47 3 0.04
49 5 0.06
50 25 0.32
51 2 0.03
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (50 bp):
TTTTATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATG
Found at i:8258551 original size:89 final size:90
Alignment explanation
Indices: 8258435--8258617 Score: 352
Period size: 89 Copynumber: 2.1 Consensus size: 90
8258425 TTTTGTTAAG
8258435 TTTT-TATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATGTTTTATAATTTTT
1 TTTTATATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATGTTTTATAATTTTT
8258499 ATAATAAATTTATTTTTT-AAAAGT
66 ATAATAAATTTATTTTTTAAAAAGT
8258523 TTTTATATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATGTTTTATAATTTTT
1 TTTTATATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATGTTTTATAATTTTT
8258588 ATAATAAATTTATTTTTTAAAAAGT
66 ATAATAAATTTATTTTTTAAAAAGT
8258613 TTTTA
1 TTTTA
8258618 AGTTTTTTTT
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
88 4 0.04
89 78 0.84
90 11 0.12
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (90 bp):
TTTTATATAATTTTTTCTTGAACTTTTATACTTTATTATTATTTTTCTAATGTTTTATAATTTTT
ATAATAAATTTATTTTTTAAAAAGT
Found at i:8262876 original size:3 final size:3
Alignment explanation
Indices: 8262870--8262910 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
8262860 GACGATGACG
8262870 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
8262911 GATGATGATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:8262915 original size:3 final size:3
Alignment explanation
Indices: 8262909--8262964 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
8262899 AATAATAATA
*
8262909 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATA ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
8262957 ATG ATG AT
1 ATG ATG AT
8262965 AATAATAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:8262965 original size:12 final size:12
Alignment explanation
Indices: 8262903--8262967 Score: 94
Period size: 12 Copynumber: 5.4 Consensus size: 12
8262893 AATAATAATA
*
8262903 ATAATAATGATG
1 ATAATGATGATG
*
8262915 ATGATGATGATG
1 ATAATGATGATG
*
8262927 ATGATGATGATG
1 ATAATGATGATG
*
8262939 ATGATGATGATG
1 ATAATGATGATG
8262951 ATAATGATGATG
1 ATAATGATGATG
8262963 ATAAT
1 ATAAT
8262968 AATAAATTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 50 1.00
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (12 bp):
ATAATGATGATG
Found at i:8264513 original size:44 final size:44
Alignment explanation
Indices: 8264450--8264647 Score: 170
Period size: 44 Copynumber: 4.5 Consensus size: 44
8264440 TTTCGATCTG
8264450 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTA
* ***** * *
8264494 CTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAACCTG
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTA
* * * ** * * *
8264537 CTTCCTACTA-T-C-TCGGGAAGATAAGATTTGCCGTCTTCGATCTG
1 C-TCC-ACTACTGCTTAGGG-AGATAAGATCTACAATCTTCAACCTA
8264581 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTA
* * *
8264625 CTCCACTGCTGCTCAGGAAGATA
1 CTCCACTACTGCTTAGGGAGATA
8264648 GGACTGGTGG
Statistics
Matches: 119, Mismatches: 28, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
42 8 0.07
43 23 0.19
44 80 0.67
45 8 0.07
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTA
Found at i:8264765 original size:89 final size:89
Alignment explanation
Indices: 8264662--8264919 Score: 401
Period size: 89 Copynumber: 2.9 Consensus size: 89
8264652 TGGTGGCTTA
*
8264662 AATCTG-TTTCGCTGCCAATATAGGAAGACATGATCTGCTATCTTCAGTCTGCTCCGCTGCAAAC
1 AATCTGCTTT-GCTGCCAATACAGGAAGACATGATCTGCTATCTTCAGTCTGCTCCGCTGCAAAC
8264726 TCAGGGAGGCGAGGCTAGTGTCTTC
65 TCAGGGAGGCGAGGCTAGTGTCTTC
* * *
8264751 AATCTGCTTTGCTGCCAATACAGGAAGACATGATCTGCTATCTTCAGTCTGCTCTGTTACAAACT
1 AATCTGCTTTGCTGCCAATACAGGAAGACATGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACT
** * *
8264816 CAGGGAGATGAGACTGGTGTCTTC
66 CAGGGAGGCGAGGCTAGTGTCTTC
* * *
8264840 GATCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACT
1 AATCTGCTTTGCTGCCAATACAGGAAGACATGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACT
8264905 CAGGGAGGCGAGGCT
66 CAGGGAGGCGAGGCT
8264920 GGATATGATG
Statistics
Matches: 151, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
89 148 0.98
90 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (89 bp):
AATCTGCTTTGCTGCCAATACAGGAAGACATGATCTGCTATCTTCAGTCTGCTCCGCTGCAAACT
CAGGGAGGCGAGGCTAGTGTCTTC
Found at i:8264899 original size:45 final size:45
Alignment explanation
Indices: 8264671--8264899 Score: 182
Period size: 45 Copynumber: 5.1 Consensus size: 45
8264661 AAATCTGTTT
* *
8264671 CGCTGCCAATATAGGAAGACATGATCTGCTATCTTCAGTCTGCTC
1 CGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
* * * * * * * *
8264716 CGCTGCAAACT-CAGGGAGGCGAG-GCTAG-TGTCTTCAATCTGCTT
1 CGCTGCCAA-TACAGGAAGACAAGATCT-GCTATCTTCAGTCTGCTC
* *
8264760 TGCTGCCAATACAGGAAGACATGATCTGCTATCTTCAGTCTGCTC
1 CGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
* * * * * ** * * *
8264805 TGTTACAAACT-CAGGGAGATGAGA-CTGGTGTCTTC-GATCTGCTT
1 CGCTGCCAA-TACAGGAAGACAAGATCTGCTATCTTCAG-TCTGCTC
8264849 CGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
1 CGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
8264894 CGCTGC
1 CGCTGC
8264900 AAACTCAGGG
Statistics
Matches: 134, Mismatches: 40, Indels: 20
0.69 0.21 0.10
Matches are distributed among these distances:
43 3 0.02
44 61 0.46
45 67 0.50
46 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (45 bp):
CGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
Found at i:8265278 original size:24 final size:24
Alignment explanation
Indices: 8265235--8265288 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
8265225 GATTGCCCCT
*
8265235 ACTGTAATCTTCAAGATTCATTCC
1 ACTGTAATCTTCAAGATTCAATCC
8265259 ACTGTAATCTTCAATG-TTCAATCC
1 ACTGTAATCTTCAA-GATTCAATCC
*
8265283 ATTGTA
1 ACTGTA
8265289 CCTTTGGGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (24 bp):
ACTGTAATCTTCAAGATTCAATCC
Found at i:8271853 original size:69 final size:67
Alignment explanation
Indices: 8271768--8271903 Score: 245
Period size: 69 Copynumber: 2.0 Consensus size: 67
8271758 ACAGATACAT
*
8271768 GTATAAATTATAAAATATACAAAAATATAAGCGTGCATATGCACACATATATATAAATAAGTTAT
1 GTATAAATTATAAAATATACAAAAATATAAGCGTGCATAT-C-CACACATATATAAATAAGTTAT
8271833 AAAA
64 AAAA
8271837 GTATAAATTATAAAATATACAAAAATATAAGCGTGCATATCCACACATATATAAATAAGTTATAA
1 GTATAAATTATAAAATATACAAAAATATAAGCGTGCATATCCACACATATATAAATAAGTTATAA
8271902 AA
66 AA
8271904 ATTTGTACAT
Statistics
Matches: 66, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
67 25 0.38
68 1 0.02
69 40 0.61
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.29
Consensus pattern (67 bp):
GTATAAATTATAAAATATACAAAAATATAAGCGTGCATATCCACACATATATAAATAAGTTATAA
AA
Found at i:8272218 original size:3 final size:3
Alignment explanation
Indices: 8272210--8272262 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
8272200 TAAATGAGCA
* *
8272210 AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8272258 AAT AA
1 AAT AA
8272263 ATTTATTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8273623 original size:22 final size:22
Alignment explanation
Indices: 8273598--8273640 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8273588 CATGCCATGT
8273598 AAAATCTT-AGAAAATGTGCTAC
1 AAAATCTTGA-AAAATGTGCTAC
8273620 AAAATCTTGAAAAATGTGCTA
1 AAAATCTTGAAAAATGTGCTA
8273641 TAACTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.28
Consensus pattern (22 bp):
AAAATCTTGAAAAATGTGCTAC
Found at i:8274110 original size:184 final size:182
Alignment explanation
Indices: 8273764--8274133 Score: 605
Period size: 184 Copynumber: 2.0 Consensus size: 182
8273754 ATGGTAATAG
*
8273764 AATGATCGTAAAATAAGAAAAATAATAATATATAGATTTTATATAGAAACTCTTTCGAGAAAAAA
1 AATGATCGCAAAATAAGAAAAATAATAATATATAGATTTTATATAGAAACTCTTTCGAGAAAAAA
* * *
8273829 TCATGGGCAGAGGAGAAGAAATTTACTTATGTTGAAAAACGAATAATACAAGAGAAATTTTGACT
66 TCACGGGCAGAGGAGAAAAAATTCACTTATGTTGAAAAACGAATAATACAAGAGAAATTTTGACT
*
8273894 ACATCTATTTAAATGTTGAAAAATCATATTCTAATCAATGTCAAATAGAAGA
131 ACATCTATTTAAATATTGAAAAATCATATTCTAATCAATGTCAAATAGAAGA
* * *
8273946 AATGATCGCAAAATAAGAAAAATAATAATATGTAGATTTTATGTGGAAACTCTTTCGAGAAAAAA
1 AATGATCGCAAAATAAGAAAAATAATAATATATAGATTTTATATAGAAACTCTTTCGAGAAAAAA
* * * *
8274011 TCACGGGTAGAGAGTAGAAAAAATTCACTTATGTTGAAAAACGAGTAATATAATAGAAATTTTGA
66 TCACGGGCAGAG-G-AGAAAAAATTCACTTATGTTGAAAAACGAATAATACAAGAGAAATTTTGA
*
8274076 CTACATCTATTTAAATATTGAAAAATCATATTCTAATCAATGTCAAATAGGAGA
129 CTACATCTATTTAAATATTGAAAAATCATATTCTAATCAATGTCAAATAGAAGA
8274130 AATG
1 AATG
8274134 TAGTTCTATA
Statistics
Matches: 173, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
182 71 0.41
183 1 0.01
184 101 0.58
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (182 bp):
AATGATCGCAAAATAAGAAAAATAATAATATATAGATTTTATATAGAAACTCTTTCGAGAAAAAA
TCACGGGCAGAGGAGAAAAAATTCACTTATGTTGAAAAACGAATAATACAAGAGAAATTTTGACT
ACATCTATTTAAATATTGAAAAATCATATTCTAATCAATGTCAAATAGAAGA
Found at i:8274950 original size:49 final size:49
Alignment explanation
Indices: 8274890--8274995 Score: 185
Period size: 49 Copynumber: 2.2 Consensus size: 49
8274880 ATTTGATTTC
*
8274890 ATATAATTTGTTGTTAGGTGAGTTAGGCTAATTTTAGTATACGATACGT
1 ATATAAATTGTTGTTAGGTGAGTTAGGCTAATTTTAGTATACGATACGT
* *
8274939 ATATAAATTGTTGTTAGGTGAGTTAGGCTAATTTTAGTATATGATTCGT
1 ATATAAATTGTTGTTAGGTGAGTTAGGCTAATTTTAGTATACGATACGT
8274988 ATATAAAT
1 ATATAAAT
8274996 AGAGTGTGTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (49 bp):
ATATAAATTGTTGTTAGGTGAGTTAGGCTAATTTTAGTATACGATACGT
Found at i:8277855 original size:18 final size:18
Alignment explanation
Indices: 8277813--8277847 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8277803 AAAAATTAAT
8277813 TGAATTAACCGAATTACC
1 TGAATTAACCGAATTACC
*
8277831 TGAATTAACCGGATTAC
1 TGAATTAACCGAATTAC
8277848 TCGAATTACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
TGAATTAACCGAATTACC
Found at i:8283526 original size:30 final size:32
Alignment explanation
Indices: 8283467--8283526 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
8283457 TAAGAAAGGA
*
8283467 AAAAAGAAGAAAGAAAAGGAAAACCCAAACTC
1 AAAAAGAAGAAAGAAAAGCAAAACCCAAACTC
* *
8283499 AAAAAGGA-AAAGAAAA-CAAACCCCAAAC
1 AAAAAGAAGAAAGAAAAGCAAAACCCAAAC
8283527 CCGTAACACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 10 0.40
31 8 0.32
32 7 0.28
ACGTcount: A:0.67, C:0.18, G:0.13, T:0.02
Consensus pattern (32 bp):
AAAAAGAAGAAAGAAAAGCAAAACCCAAACTC
Found at i:8285919 original size:43 final size:42
Alignment explanation
Indices: 8285858--8285967 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
8285848 CAATGCCAAC
*
8285858 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGTC-ACT
1 GTCCCAGACATGGTCTTACACGTAATCAAATA-CGATGTCGA-T
* * **
8285901 GTCCCAGACAGGGTCTTACACGAAATCGTATACGATGTCGAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATACGATGTCGAT
*
8285943 GTCCCAGACATGATCTTACACGTAA
1 GTCCCAGACATGGTCTTACACGTAA
8285968 ATCTCAAATC
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 30 0.52
43 28 0.48
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATACGATGTCGAT
Done.