Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 27 of 136
Found at i:8565742 original size:29 final size:28
Alignment explanation
Indices: 8565705--8565926 Score: 152
Period size: 29 Copynumber: 7.7 Consensus size: 28
8565695 TTTTAGAGTT
*
8565705 TTGCCACAAAGACATCCTTTTAATAGAG-
1 TTGCCACAAAG-CTTCCTTTTAATAGAGA
*
8565733 TCTGCCAC-AAGACATT-CATTTAACTA-AG-
1 T-TGCCACAAAG-C-TTCCTTTTAA-TAGAGA
**
8565761 TTAGCCACAAAGGCACCCTTTTAGA-AGAGA
1 TT-GCCACAAA-GCTTCCTTTTA-ATAGAGA
*
8565791 TAGCCACAAACGCTTCCTTTTAGA-AGAGA
1 TTGCCACAAA-GCTTCCTTTTA-ATAGAGA
* *
8565820 TAGCCACAAACGCTTCCTTTTAACAGAGA
1 TTGCCACAAA-GCTTCCTTTTAATAGAGA
* *
8565849 TTGCCACAAAGGCTTCTTTTTAACAGAGA
1 TTGCCACAAA-GCTTCCTTTTAATAGAGA
*
8565878 TTGCCACAATGTCTTCCTTTTAATAGAGA
1 TTGCCACAAAG-CTTCCTTTTAATAGAGA
* * *
8565907 TAGTCACAAAGGCATCCTTT
1 TTGCCACAAA-GCTTCCTTT
8565927 CAGAGATAAC
Statistics
Matches: 162, Mismatches: 19, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
27 1 0.01
28 23 0.14
29 134 0.83
30 4 0.02
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (28 bp):
TTGCCACAAAGCTTCCTTTTAATAGAGA
Found at i:8565839 original size:58 final size:58
Alignment explanation
Indices: 8565762--8565973 Score: 192
Period size: 58 Copynumber: 3.8 Consensus size: 58
8565752 TTAACTAAGT
* ** *
8565762 TAGCCACAAAGGCACCCTTTTAGA-AGAGATAGCCACAAACGCTTCCTTTTAGA-AGAGA
1 TAGCCACAAACGCTTCCTTTTA-ACAGAGATAGCCACAAAGGCTTCCTTTTA-ACAGAGA
* *
8565820 TAGCCACAAACGCTTCCTTTTAACAGAGATTGCCACAAAGGCTTCTTTTTAACAGAGA
1 TAGCCACAAACGCTTCCTTTTAACAGAGATAGCCACAAAGGCTTCCTTTTAACAGAGA
* * * * *
8565878 TTGCCAC-AATGTCTTCCTTTTAATAGAGATAGTCACAAAGGCATCC-TTT--CAGAGA
1 TAGCCACAAACG-CTTCCTTTTAACAGAGATAGCCACAAAGGCTTCCTTTTAACAGAGA
* * *
8565933 TAACCACAAA-GACATCC--TT-CCAGAGATAGCCACAAAGGCTT
1 TAGCCACAAACG-CTTCCTTTTAACAGAGATAGCCACAAAGGCTT
8565974 TTTTTAAGAA
Statistics
Matches: 129, Mismatches: 21, Indels: 14
0.79 0.13 0.09
Matches are distributed among these distances:
52 18 0.14
53 2 0.02
55 16 0.12
56 2 0.02
57 8 0.06
58 83 0.64
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (58 bp):
TAGCCACAAACGCTTCCTTTTAACAGAGATAGCCACAAAGGCTTCCTTTTAACAGAGA
Found at i:8565878 original size:87 final size:87
Alignment explanation
Indices: 8565764--8565926 Score: 206
Period size: 87 Copynumber: 1.9 Consensus size: 87
8565754 AACTAAGTTA
8565764 GCCACAAAGGCACCCTTTTAGAAGAGATAGCCACAAACG-CTTCCTTTTAGA-AGAGATAGCCAC
1 GCCACAAAGGCACCCTTTTAGAAGAGATAGCCAC-AACGTCTTCCTTTTA-ATAGAGATAGCCAC
*
8565827 AAACGCTTCCTTTTAACAGAGATT
64 AAACGCATCCTTTTAACAGAGATT
** * * * *
8565851 GCCACAAAGGCTTCTTTTTA-ACAGAGATTGCCACAATGTCTTCCTTTTAATAGAGATAGTCACA
1 GCCACAAAGGCACCCTTTTAGA-AGAGATAGCCACAACGTCTTCCTTTTAATAGAGATAGCCACA
*
8565915 AAGGCATCCTTT
65 AACGCATCCTTT
8565927 CAGAGATAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
86 5 0.08
87 60 0.92
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (87 bp):
GCCACAAAGGCACCCTTTTAGAAGAGATAGCCACAACGTCTTCCTTTTAATAGAGATAGCCACAA
ACGCATCCTTTTAACAGAGATT
Found at i:8565940 original size:26 final size:26
Alignment explanation
Indices: 8565902--8565971 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
8565892 TCCTTTTAAT
* *
8565902 AGAGATAGTCACAAAGGCATCCTTTC
1 AGAGATAGCCACAAAGGCATCCTTCC
* *
8565928 AGAGATAACCACAAAGACATCCTTCC
1 AGAGATAGCCACAAAGGCATCCTTCC
8565954 AGAGATAGCCACAAAGGC
1 AGAGATAGCCACAAAGGC
8565972 TTTTTTTAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.40, C:0.26, G:0.19, T:0.16
Consensus pattern (26 bp):
AGAGATAGCCACAAAGGCATCCTTCC
Found at i:8573599 original size:22 final size:20
Alignment explanation
Indices: 8573549--8573604 Score: 51
Period size: 22 Copynumber: 2.5 Consensus size: 20
8573539 CTTTACTAAT
8573549 AATAATAAAATACAGAAAATA
1 AATAAT-AAATACAGAAAATA
8573570 AATAAATAAATCACTAG-AAATCA
1 AAT-AATAAAT-AC-AGAAAAT-A
8573593 AATAATAGAATA
1 AATAATA-AATA
8573605 TATGAAATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
21 7 0.23
22 14 0.47
23 9 0.30
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.21
Consensus pattern (20 bp):
AATAATAAATACAGAAAATA
Found at i:8579515 original size:15 final size:15
Alignment explanation
Indices: 8579495--8579531 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
8579485 ATACTTTATC
*
8579495 GAGGCCGCCAATAAT
1 GAGGCCACCAATAAT
8579510 GAGGCCACCAATAAT
1 GAGGCCACCAATAAT
8579525 GAGGCCA
1 GAGGCCA
8579532 ATTTGGACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.35, C:0.27, G:0.27, T:0.11
Consensus pattern (15 bp):
GAGGCCACCAATAAT
Found at i:8581538 original size:20 final size:21
Alignment explanation
Indices: 8581513--8581551 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8581503 CCTCAGAATG
*
8581513 GGTTAGACTTAG-TTAGACTT
1 GGTTAGACCTAGATTAGACTT
8581533 GGTTAGACCTAGATTAGAC
1 GGTTAGACCTAGATTAGAC
8581552 AAACAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (21 bp):
GGTTAGACCTAGATTAGACTT
Found at i:8586079 original size:27 final size:28
Alignment explanation
Indices: 8586020--8586080 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
8586010 GTGTTGGGGT
* *
8586020 GAACTAGGCTCACAAATGTGTTTTTGGC
1 GAACTAAGCTCACAAATGAGTTTTTGGC
*
8586048 GAACTAAGTTCACAAATGAG-TTTTGGC
1 GAACTAAGCTCACAAATGAGTTTTTGGC
8586075 GAACTA
1 GAACTA
8586081 TGTTTGCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (28 bp):
GAACTAAGCTCACAAATGAGTTTTTGGC
Found at i:8592348 original size:32 final size:32
Alignment explanation
Indices: 8592310--8592376 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
8592300 GATTGGGGCA
8592310 ACCAGATGGGATATGGAGTGTTACATGTGACC
1 ACCAGATGGGATATGGAGTGTTACATGTGACC
8592342 ACCAGATGGGATATGGAGTGTTACATGTGACC
1 ACCAGATGGGATATGGAGTGTTACATGTGACC
8592374 ACC
1 ACC
8592377 GAGGATCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (32 bp):
ACCAGATGGGATATGGAGTGTTACATGTGACC
Found at i:8604585 original size:32 final size:32
Alignment explanation
Indices: 8604528--8604655 Score: 143
Period size: 32 Copynumber: 4.0 Consensus size: 32
8604518 AGCCATAAGC
* * * *
8604528 ACAGTAATGTGATTGGCACAAAACCATCAGTA
1 ACAGTGATATGATCGGCACAAAGCCATCAGTA
*
8604560 GCAGTGATATGATCGGCACACAA-CCATCAGTA
1 ACAGTGATATGATCGGCACA-AAGCCATCAGTA
* *
8604592 ACAGTGAAATGATTGGCACAAAGCCATCAGTA
1 ACAGTGATATGATCGGCACAAAGCCATCAGTA
* *
8604624 ACGGT-ACTATGATCGGCACAAAGTCATCAGTA
1 ACAGTGA-TATGATCGGCACAAAGCCATCAGTA
8604656 GGTTCACAGC
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
31 3 0.04
32 77 0.94
33 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (32 bp):
ACAGTGATATGATCGGCACAAAGCCATCAGTA
Found at i:8604830 original size:24 final size:24
Alignment explanation
Indices: 8604803--8604857 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
8604793 CCATGCTTAG
* *
8604803 AATCAGTCAT-TCAAATCATAGACA
1 AATCAGTCATACCAAA-CACAGACA
*
8604827 AATCAATCATACCAAACACAGACA
1 AATCAGTCATACCAAACACAGACA
8604851 AATCAGT
1 AATCAGT
8604858 TATTTAACCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (24 bp):
AATCAGTCATACCAAACACAGACA
Found at i:8604962 original size:27 final size:27
Alignment explanation
Indices: 8604925--8605035 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
8604915 ACACCAGGGC
* *
8604925 ATTACGGTCATTTTACCTTACAGGGGT
1 ATTACAGTCATTTTACCCTACAGGGGT
* *
8604952 ATTACAGTCATTTTACCCTACAAGGGC
1 ATTACAGTCATTTTACCCTACAGGGGT
* *
8604979 ATTACAGTCATTTTACCCTATAAGGGT
1 ATTACAGTCATTTTACCCTACAGGGGT
* * **
8605006 ACTA-TGATCATTTTACCCTATGGGGGT
1 ATTACAG-TCATTTTACCCTACAGGGGT
8605033 ATT
1 ATT
8605036 TTGATATTCT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 71 0.99
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
ATTACAGTCATTTTACCCTACAGGGGT
Found at i:8605006 original size:54 final size:54
Alignment explanation
Indices: 8604920--8605025 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
8604910 TTTACACACC
* * * *
8604920 AGGGCATTACGGTCATTTTACCTTACAGGGGTATTACAG-TCATTTTACCCTACA
1 AGGGCATTACAGTCATTTTACCCTACAAGGGTACTA-AGATCATTTTACCCTACA
* *
8604974 AGGGCATTACAGTCATTTTACCCTATAAGGGTACTATGATCATTTTACCCTA
1 AGGGCATTACAGTCATTTTACCCTACAAGGGTACTAAGATCATTTTACCCTA
8605026 TGGGGGTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.02
54 44 0.98
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (54 bp):
AGGGCATTACAGTCATTTTACCCTACAAGGGTACTAAGATCATTTTACCCTACA
Found at i:8605040 original size:27 final size:27
Alignment explanation
Indices: 8604986--8605129 Score: 143
Period size: 27 Copynumber: 5.4 Consensus size: 27
8604976 GGCATTACAG
** * *
8604986 TCATTTTACCCTATAAGGGTACTATGA
1 TCATTTTACCCTATGGGGGTATTTTGA
8605013 TCATTTTACCCTATGGGGGTATTTTGA
1 TCATTTTACCCTATGGGGGTATTTTGA
* * * *
8605040 T-ATTCTACCTTACGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTTGA
*
8605066 TCATTTTACCTTAT-GGGGTATTTT-A
1 TCATTTTACCCTATGGGGGTATTTTGA
* *
8605091 GTCATTTTACCC-ATCGAGGGTATTTCGA
1 -TCATTTTACCCTAT-GGGGGTATTTTGA
8605119 TCATTTTACCC
1 TCATTTTACCC
8605130 ATCGATGCTA
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
25 3 0.03
26 41 0.42
27 53 0.54
28 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTTGA
Found at i:8605056 original size:26 final size:26
Alignment explanation
Indices: 8605010--8605089 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 26
8605000 AAGGGTACTA
* *
8605010 TGATCATTTTACCCTATGGGGGTATTT
1 TGATCATTCTACCTTA-GGGGGTATTT
8605037 TGAT-ATTCTACCTTACGGGGGTATTT
1 TGATCATTCTACCTTA-GGGGGTATTT
* * *
8605063 CGATCATTTTACCTTATGGGGTATTT
1 TGATCATTCTACCTTAGGGGGTATTT
8605089 T
1 T
8605090 AGTCATTTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 31 0.69
27 14 0.31
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.45
Consensus pattern (26 bp):
TGATCATTCTACCTTAGGGGGTATTT
Found at i:8605071 original size:53 final size:53
Alignment explanation
Indices: 8605011--8605129 Score: 154
Period size: 53 Copynumber: 2.2 Consensus size: 53
8605001 AGGGTACTAT
* *
8605011 GATCATTTTACCCTATGGGGGTATTTT-GAT-ATTCTA-CCTTACGGGGGTATTTC
1 GATCATTTTACCCTAT-GGGGTATTTTAG-TCATTCTACCCAT-CGAGGGTATTTC
* *
8605064 GATCATTTTACCTTATGGGGTATTTTAGTCATTTTACCCATCGAGGGTATTTC
1 GATCATTTTACCCTATGGGGTATTTTAGTCATTCTACCCATCGAGGGTATTTC
8605117 GATCATTTTACCC
1 GATCATTTTACCC
8605130 ATCGATGCTA
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
52 11 0.19
53 44 0.76
54 3 0.05
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.42
Consensus pattern (53 bp):
GATCATTTTACCCTATGGGGTATTTTAGTCATTCTACCCATCGAGGGTATTTC
Found at i:8605095 original size:26 final size:27
Alignment explanation
Indices: 8604931--8605102 Score: 106
Period size: 27 Copynumber: 6.4 Consensus size: 27
8604921 GGGCATTACG
* * *
8604931 GTCATTTTACCTTACAGGGGTATTACA
1 GTCATTTTACCCTACTGGGGTATTATA
** * *
8604958 GTCATTTTACCCTACAAGGGCATTACA
1 GTCATTTTACCCTACTGGGGTATTATA
* *
8604985 GTCATTTTACCCTA-TAAGGGTACTAT-
1 GTCATTTTACCCTACT-GGGGTATTATA
*
8605011 GATCATTTTACCCTA-TGGGGGTATT-TT
1 G-TCATTTTACCCTACT-GGGGTATTATA
* * * *
8605038 GAT-ATTCTACCTTACGGGGGTATT-TC
1 G-TCATTTTACCCTACTGGGGTATTATA
* *
8605064 GATCATTTTACCTTA-TGGGGTATTTTA
1 G-TCATTTTACCCTACTGGGGTATTATA
8605091 GTCATTTTACCC
1 GTCATTTTACCC
8605103 ATCGAGGGTA
Statistics
Matches: 121, Mismatches: 18, Indels: 13
0.80 0.12 0.09
Matches are distributed among these distances:
26 41 0.34
27 80 0.66
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTACTGGGGTATTATA
Found at i:8617631 original size:15 final size:15
Alignment explanation
Indices: 8617611--8617644 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8617601 AAATTAAAAA
8617611 TAAATTAAGA-TAAAT
1 TAAATTAA-ACTAAAT
8617626 TAAATTAAACTAAAT
1 TAAATTAAACTAAAT
8617641 TAAA
1 TAAA
8617645 AGTAATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (15 bp):
TAAATTAAACTAAAT
Found at i:8617789 original size:20 final size:21
Alignment explanation
Indices: 8617764--8617804 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
8617754 ATAGAGCTAA
*
8617764 TTATATA-ACATTTGACAAAT
1 TTATATACAAATTTGACAAAT
8617784 TTATATAGCAAATTTGACAAA
1 TTATATA-CAAATTTGACAAA
8617805 CAAAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (21 bp):
TTATATACAAATTTGACAAAT
Found at i:8619771 original size:40 final size:40
Alignment explanation
Indices: 8619646--8619776 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
8619636 CGGAAAATCG
* *
8619646 CCGCAATAGGTAAAGCAGTAGCGGCGTTTATGATAAAAACA
1 CCGCAAAAGGT-AAGCAATAGCGGCGTTTATGATAAAAACA
* *
8619687 CCACAAAAGGTAAGCAATAGCGGTGTTTATGATAAAAACA
1 CCGCAAAAGGTAAGCAATAGCGGCGTTTATGATAAAAACA
* * * * * **
8619727 CCGCAAAAGGTTAGTAATAGCTGCGTTTGTGGTAAAAATG
1 CCGCAAAAGGTAAGCAATAGCGGCGTTTATGATAAAAACA
8619767 CCGCAAAAGG
1 CCGCAAAAGG
8619777 GTTTTTACTT
Statistics
Matches: 77, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 68 0.88
41 9 0.12
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (40 bp):
CCGCAAAAGGTAAGCAATAGCGGCGTTTATGATAAAAACA
Found at i:8619986 original size:49 final size:49
Alignment explanation
Indices: 8619840--8619986 Score: 169
Period size: 48 Copynumber: 3.0 Consensus size: 49
8619830 ACACGAATTA
* * * * *
8619840 TTTTCTTTCTCAGTCTTTTCTTTACTTG-AAACCCTAAAATCATTTCCC
1 TTTTTTTTCTCAGTCTTTTCTTTGCTTGAAAACCCCAAAATCCTGTCCC
*
8619888 TTTTCTTTTCT-AGACTTTTCTTTGCTT-AAAACCCCAAAAT-CTCGTCCC
1 TTTT-TTTTCTCAGTCTTTTCTTTGCTTGAAAACCCCAAAATCCT-GTCCC
*
8619936 TTTTTTTTCTCAGTCTTTT-TGTTGCTTGAAAACCCCAAAATCCTGCCCC
1 TTTTTTTTCTCAGTCTTTTCT-TTGCTTGAAAACCCCAAAATCCTGTCCC
8619985 TT
1 TT
8619987 GTGCTTTTAT
Statistics
Matches: 84, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
47 8 0.10
48 50 0.60
49 24 0.29
50 2 0.02
ACGTcount: A:0.20, C:0.28, G:0.07, T:0.46
Consensus pattern (49 bp):
TTTTTTTTCTCAGTCTTTTCTTTGCTTGAAAACCCCAAAATCCTGTCCC
Found at i:8622197 original size:13 final size:14
Alignment explanation
Indices: 8622179--8622207 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8622169 CATTAAATTG
8622179 TTATTAAT-AATGT
1 TTATTAATCAATGT
8622192 TTATTAATCAATGT
1 TTATTAATCAATGT
8622206 TT
1 TT
8622208 TAATTGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.55
Consensus pattern (14 bp):
TTATTAATCAATGT
Found at i:8623539 original size:23 final size:22
Alignment explanation
Indices: 8623509--8623577 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
8623499 ATTTGACTTA
8623509 AATCTATTTAGAACACTTAAGT
1 AATCTATTTAGAACACTTAAGT
* *
8623531 AATCATATTATA-AACA-TGAATT
1 AATC-TATT-TAGAACACTTAAGT
8623553 AAATCTATTTAGAACACTTAAGT
1 -AATCTATTTAGAACACTTAAGT
8623576 AA
1 AA
8623578 CCGTAGTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
21 2 0.05
22 18 0.47
23 16 0.42
24 2 0.05
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (22 bp):
AATCTATTTAGAACACTTAAGT
Found at i:8624034 original size:13 final size:13
Alignment explanation
Indices: 8624018--8624043 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8624008 ACTTAAAGGG
8624018 TTAAAATTTAAAA
1 TTAAAATTTAAAA
8624031 TTAAAATTTAAAA
1 TTAAAATTTAAAA
8624044 ATGATAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TTAAAATTTAAAA
Found at i:8624109 original size:9 final size:9
Alignment explanation
Indices: 8624095--8624193 Score: 78
Period size: 9 Copynumber: 11.0 Consensus size: 9
8624085 AACTTTGGAT
*
8624095 CATAACTTG
1 CATAACTTA
8624104 CATAACTTA
1 CATAACTTA
8624113 CATAACTTA
1 CATAACTTA
*
8624122 CATAA-ATA
1 CATAACTTA
* *
8624130 TAT-ATTATA
1 CATAACT-TA
8624139 TCATAACTTA
1 -CATAACTTA
8624149 CATAACTTA
1 CATAACTTA
*
8624158 CATAA-ATA
1 CATAACTTA
* * *
8624166 TATAGCATA
1 CATAACTTA
8624175 TCATAACTTA
1 -CATAACTTA
8624185 CATAACTTA
1 CATAACTTA
8624194 TAAATAAACA
Statistics
Matches: 72, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
7 1 0.01
8 9 0.12
9 50 0.69
10 10 0.14
11 2 0.03
ACGTcount: A:0.45, C:0.17, G:0.02, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:8624151 original size:36 final size:36
Alignment explanation
Indices: 8624104--8624193 Score: 162
Period size: 36 Copynumber: 2.5 Consensus size: 36
8624094 TCATAACTTG
**
8624104 CATAACTTACATAACTTACATAAATATATATTATAT
1 CATAACTTACATAACTTACATAAATATATAGCATAT
8624140 CATAACTTACATAACTTACATAAATATATAGCATAT
1 CATAACTTACATAACTTACATAAATATATAGCATAT
8624176 CATAACTTACATAACTTA
1 CATAACTTACATAACTTA
8624194 TAAATAAACA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.36
Consensus pattern (36 bp):
CATAACTTACATAACTTACATAAATATATAGCATAT
Found at i:8627980 original size:15 final size:15
Alignment explanation
Indices: 8627960--8627988 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8627950 TTGTAAAAAT
8627960 TAAAAAAGAAATAAA
1 TAAAAAAGAAATAAA
8627975 TAAAAAAGAAATAA
1 TAAAAAAGAAATAA
8627989 GAAAACTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (15 bp):
TAAAAAAGAAATAAA
Found at i:8628080 original size:15 final size:14
Alignment explanation
Indices: 8628053--8628083 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8628043 GGGCTGACAA
8628053 AAAAATAATAAACC
1 AAAAATAATAAACC
*
8628067 AAAAATAATAAAAC
1 AAAAATAATAAACC
8628081 AAA
1 AAA
8628084 GTCCAAGTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAATAATAAACC
Found at i:8628220 original size:19 final size:19
Alignment explanation
Indices: 8628196--8628249 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
8628186 AATCTTCAAG
*
8628196 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAA
8628215 GATATGCAATCTTAGATAA
1 GATATGCAATCTTAGATAA
8628234 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
8628250 AGATAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (19 bp):
GATATGCAATCTTAGATAA
Found at i:8628275 original size:22 final size:22
Alignment explanation
Indices: 8628196--8628272 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 22
8628186 AATCTTCAAG
*
8628196 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAA
8628215 GATATGCAATCTT---AGATAA
1 GATATGCAATCTTAGAAGATAA
8628234 GATATGCAATCTTAGAAGATAA
1 GATATGCAATCTTAGAAGATAA
* *
8628256 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
8628273 GATTTAATTT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 31 0.61
22 8 0.16
23 12 0.24
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAA
Found at i:8629151 original size:24 final size:22
Alignment explanation
Indices: 8629119--8629180 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 22
8629109 AGTGTATTGT
8629119 ATATTATTATTTTAGATTTATCA
1 ATATTATTATTTTA-ATTTATCA
* *
8629142 TCTTTTATTATTTGTAATTTATCA
1 -ATATTATTATTT-TAATTTATCA
8629166 ATATTATTATTTTAA
1 ATATTATTATTTTAA
8629181 ATTCATTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 3 0.09
23 10 0.30
24 18 0.55
25 2 0.06
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (22 bp):
ATATTATTATTTTAATTTATCA
Found at i:8630829 original size:44 final size:44
Alignment explanation
Indices: 8630776--8631214 Score: 239
Period size: 44 Copynumber: 9.7 Consensus size: 44
8630766 TCATTATTTT
* *
8630776 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTC
* ** * *
8630820 AATCTGCTCCACTGTAACTTCAAAGAGATAAGATTGGTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTC
* * * *
8630864 AACCTGCTCCACTACAACTTCAGGGAGATAAGGTT--TGA-TAT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACT-TC
* * * * * * *
8630905 GATCTACTCTATTGCAACTTCAGAGAGATAATATCCGTAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT---T-A-GTA-A-CTTC
* * * * * *
8630956 AATCTGTTCCACGGCAACTTTAGGGAAATAAGATTCACTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AGTAACTTC
* * *
8631001 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGCTATGGTAGA-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T--TA--GTA-ACTTC
* * * * * *** *
8631051 AATCTAAC-CTACTGCAACCTCAGAGG-TATAGGATTCA-TTGTTTT
1 AATCT-GCTCCACTGCAACTTCAG-GGAGATAAGATT-AGTAACTTC
* * * *
8631095 AAT-TCGCTCCACTACAACTTTAGGGAGATAGGATTAGTAGCTTC
1 AATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTC
* *
8631139 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTC
* *
8631183 AACCTGCTCCACTACAACTTCAGGGAGATAAG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG
8631215 GTTTGCTATA
Statistics
Matches: 297, Mismatches: 71, Indels: 54
0.70 0.17 0.13
Matches are distributed among these distances:
41 26 0.09
42 2 0.01
43 5 0.02
44 164 0.55
45 34 0.11
46 1 0.00
47 4 0.01
48 5 0.02
49 2 0.01
50 26 0.09
51 28 0.09
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTC
Found at i:8632122 original size:21 final size:22
Alignment explanation
Indices: 8632098--8632165 Score: 84
Period size: 21 Copynumber: 3.0 Consensus size: 22
8632088 TTAGCCTCTC
8632098 CTTTTTATTTTTCTTTT-ATTT
1 CTTTTTATTTTTCTTTTCATTT
*
8632119 CTTTTTATTTTTCTTTTCTTTT
1 CTTTTTATTTTTCTTTTCATTT
*
8632141 CTTTTTTTCTTTTTTCTTTTCATTT
1 C--TTTTT-ATTTTTCTTTTCATTT
8632166 TTGTTCTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
21 17 0.43
22 4 0.10
24 5 0.12
25 14 0.35
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (22 bp):
CTTTTTATTTTTCTTTTCATTT
Found at i:8632145 original size:15 final size:14
Alignment explanation
Indices: 8632105--8632175 Score: 61
Period size: 15 Copynumber: 4.7 Consensus size: 14
8632095 CTCCTTTTTA
*
8632105 TTTTTCTTTTATTT
1 TTTTTCTTTTCTTT
*
8632119 CTTTTTATTTTTCTTT
1 -TTTTT-CTTTTCTTT
*
8632135 TCTTTTCTTTTTTTCT
1 T-TTTTCTTTTCTT-T
8632151 TTTTTCTTTTCATTT
1 TTTTTCTTTTC-TTT
*
8632166 TTGTTCTTTT
1 TTTTTCTTTT
8632176 TTAAAAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
15 31 0.67
16 15 0.33
ACGTcount: A:0.04, C:0.13, G:0.01, T:0.82
Consensus pattern (14 bp):
TTTTTCTTTTCTTT
Found at i:8632152 original size:30 final size:30
Alignment explanation
Indices: 8632105--8632177 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 30
8632095 CTCCTTTTTA
8632105 TTTTTCTTTTATTTCTTTTTAT-TTTTC-TTT
1 TTTTTCTTTT-TTTCTTTTT-TCTTTTCATTT
8632135 TCTTTTCTTTTTTTCTTTTTTCTTTTCATTT
1 T-TTTTCTTTTTTTCTTTTTTCTTTTCATTT
*
8632166 TTGTTCTTTTTT
1 TTTTTCTTTTTT
8632178 AAAAAAAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
29 1 0.03
30 25 0.64
31 13 0.33
ACGTcount: A:0.04, C:0.12, G:0.01, T:0.82
Consensus pattern (30 bp):
TTTTTCTTTTTTTCTTTTTTCTTTTCATTT
Found at i:8632167 original size:22 final size:22
Alignment explanation
Indices: 8632105--8632177 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
8632095 CTCCTTTTTA
*
8632105 TTTTTCTTTT-ATTTCTTTTT-A
1 TTTTTCTTTTCATTT-TTTTTCT
*
8632126 TTTTTCTTTTCTTTTCTTTTTTTCT
1 TTTTTCTTTTC--AT-TTTTTTTCT
*
8632151 TTTTTCTTTTCATTTTTGTTCT
1 TTTTTCTTTTCATTTTTTTTCT
8632173 TTTTT
1 TTTTT
8632178 AAAAAAAAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
21 10 0.23
22 13 0.30
23 1 0.02
24 6 0.14
25 13 0.30
ACGTcount: A:0.04, C:0.12, G:0.01, T:0.82
Consensus pattern (22 bp):
TTTTTCTTTTCATTTTTTTTCT
Found at i:8637450 original size:297 final size:298
Alignment explanation
Indices: 8636905--8637500 Score: 1185
Period size: 297 Copynumber: 2.0 Consensus size: 298
8636895 GGTCATTTAG
8636905 TAATTAAAAGAATTAAAAAGGCCAAAATAGCCAAAAATTTGTCCATCTTCTCCAGGATGAACAAA
1 TAATTAAAAGAATTAAAAAGGCCAAAATAGCCAAAAATTTGTCCATCTTCTCCAGGATGAACAAA
8636970 AATAGCAAGGGGGAATCCATGGTTAGGGTTTTCAAGCTTCCAATCTCCATAGTAAGTGATTTCAA
66 AATAGCAAGGGGGAATCCATGGTTAGGGTTTTCAAGCTTCCAATCTCCATAGTAAGTGATTTCAA
8637035 GCCCCGTTTTTAATGTTCTATAGGTTTTTGAAGTCTCGGTAGCTTAATTTAGCTTATTCTAGTAA
131 GCCCCGTTTTTAATGTTCTATAGGTTTTTGAAGTCTCGGTAGCTTAATTTAGCTTATTCTAGTAA
8637100 TAATTTAACCTAGGATTTATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTT
196 TAATTTAACCTAGGATTTATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTT
8637165 TATGGTAAAATATGAAGCTTGAAATTGTGTTGAACAAT
261 TATGGTAAAATATGAAGCTTGAAATTGTGTTGAACAAT
8637203 TAATTAAAAG-ATTAAAAAGGCCAAAATAGCCAAAAATTTGTCCATCTTCTCCAGGATGAACAAA
1 TAATTAAAAGAATTAAAAAGGCCAAAATAGCCAAAAATTTGTCCATCTTCTCCAGGATGAACAAA
8637267 AATAGCAAGGGGGAATCCATGGTTAGGGTTTTCAAGCTTCCAATCTCCATAGTAAGTGATTTCAA
66 AATAGCAAGGGGGAATCCATGGTTAGGGTTTTCAAGCTTCCAATCTCCATAGTAAGTGATTTCAA
8637332 GCCCCGTTTTTAATGTTCTATAGGTTTTTGAAGTCTCGGTAGCTTAATTTAGCTTATTCTAGTAA
131 GCCCCGTTTTTAATGTTCTATAGGTTTTTGAAGTCTCGGTAGCTTAATTTAGCTTATTCTAGTAA
8637397 TAATTTAACCTAGGATTTATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTT
196 TAATTTAACCTAGGATTTATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTT
8637462 TATGGTAAAATATGAAGCTTGAAATTGTGTTGAACAAT
261 TATGGTAAAATATGAAGCTTGAAATTGTGTTGAACAAT
8637500 T
1 T
8637501 TTTGCTAAGC
Statistics
Matches: 298, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
297 288 0.97
298 10 0.03
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (298 bp):
TAATTAAAAGAATTAAAAAGGCCAAAATAGCCAAAAATTTGTCCATCTTCTCCAGGATGAACAAA
AATAGCAAGGGGGAATCCATGGTTAGGGTTTTCAAGCTTCCAATCTCCATAGTAAGTGATTTCAA
GCCCCGTTTTTAATGTTCTATAGGTTTTTGAAGTCTCGGTAGCTTAATTTAGCTTATTCTAGTAA
TAATTTAACCTAGGATTTATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTT
TATGGTAAAATATGAAGCTTGAAATTGTGTTGAACAAT
Found at i:8639388 original size:14 final size:14
Alignment explanation
Indices: 8639369--8639396 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8639359 GTGTTTTATG
8639369 GCATATCTTAAGTA
1 GCATATCTTAAGTA
8639383 GCATATCTTAAGTA
1 GCATATCTTAAGTA
8639397 ATGGAATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
GCATATCTTAAGTA
Found at i:8645008 original size:66 final size:65
Alignment explanation
Indices: 8644896--8645021 Score: 155
Period size: 66 Copynumber: 1.9 Consensus size: 65
8644886 GCAAATTGCT
**
8644896 CAACTTAAAGCGGAGGCAGCACCGAGAGAAGCAGAGGCTCAAAGAAAATATAAAGAACTCCAACA
1 CAACTTAAAGCAAAGGCAGCACCGAGAGAAGCAGAGGC-CAAAGAAAATATAAAGAACTCCAACA
8644961 A
65 A
* * * * *
8644962 CAACTTAAAGCAAAGGCAGCAGCGAGGGAAGTAGAGG-CAAGCAGAAAATATGACGAACTC
1 CAACTTAAAGCAAAGGCAGCACCGAGAGAAGCAGAGGCCAA--AGAAAATATAAAGAACTC
8645022 TAATTAGAGC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
64 3 0.06
66 48 0.94
ACGTcount: A:0.45, C:0.20, G:0.25, T:0.10
Consensus pattern (65 bp):
CAACTTAAAGCAAAGGCAGCACCGAGAGAAGCAGAGGCCAAAGAAAATATAAAGAACTCCAACAA
Found at i:8645230 original size:37 final size:36
Alignment explanation
Indices: 8645181--8645269 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 36
8645171 TACATATTTC
*
8645181 TTTTGTTGGATTTGAAGTATCATTTAGATTTGCAGT
1 TTTTGTTGGATTTGAAGTATAATTTAGATTTGCAGT
**
8645217 TTTTGGTTGGATTTGAAGTATAATTTATTTTTGCAGTT
1 TTTT-GTTGGATTTGAAGTATAATTTAGATTTGCAG-T
8645255 TTTTGTTGGATTTGA
1 TTTTGTTGGATTTGA
8645270 TGTTACAGGA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
36 4 0.08
37 39 0.81
38 5 0.10
ACGTcount: A:0.20, C:0.03, G:0.22, T:0.54
Consensus pattern (36 bp):
TTTTGTTGGATTTGAAGTATAATTTAGATTTGCAGT
Found at i:8646094 original size:41 final size:41
Alignment explanation
Indices: 8646037--8646123 Score: 174
Period size: 41 Copynumber: 2.1 Consensus size: 41
8646027 TGAAGGTATT
8646037 TGGCAGTTTCTGCATGGTCCAGGTGTGATGATTGTTGAGTG
1 TGGCAGTTTCTGCATGGTCCAGGTGTGATGATTGTTGAGTG
8646078 TGGCAGTTTCTGCATGGTCCAGGTGTGATGATTGTTGAGTG
1 TGGCAGTTTCTGCATGGTCCAGGTGTGATGATTGTTGAGTG
8646119 TGGCA
1 TGGCA
8646124 TCGTGAGAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.15, C:0.13, G:0.37, T:0.36
Consensus pattern (41 bp):
TGGCAGTTTCTGCATGGTCCAGGTGTGATGATTGTTGAGTG
Found at i:8656039 original size:37 final size:36
Alignment explanation
Indices: 8655998--8656069 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 36
8655988 CAATCCTTCA
*
8655998 TTAGGAACTC-TCCATAGCGATCGTTCACTTAGGACAG
1 TTAGGAAC-CATCCATAGCGA-CCTTCACTTAGGACAG
*
8656035 TTAGGGACCATCCATAGCGACCTTCACTTAGGACA
1 TTAGGAACCATCCATAGCGACCTTCACTTAGGACA
8656070 ACCTACATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 15 0.47
37 17 0.53
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (36 bp):
TTAGGAACCATCCATAGCGACCTTCACTTAGGACAG
Found at i:8661520 original size:61 final size:58
Alignment explanation
Indices: 8661413--8661524 Score: 170
Period size: 61 Copynumber: 1.9 Consensus size: 58
8661403 ATCACTTTAA
* * *
8661413 TATTATATTAATATAATACTTAACAAGATAAATATTAGATTAAATTTAATAATAAATC
1 TATTAAATTAATAGAATACTTAACAAGATAAATATTAAATTAAATTTAATAATAAATC
8661471 TATTAAATTAATAGAATACTTATCTACAAGATAAATATTAAATTAAATTTAATA
1 TATTAAATTAATAGAATACTTA---ACAAGATAAATATTAAATTAAATTTAATA
8661525 TTACAATAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
58 20 0.42
61 28 0.58
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTAACAAGATAAATATTAAATTAAATTTAATAATAAATC
Found at i:8661612 original size:68 final size:71
Alignment explanation
Indices: 8661471--8661615 Score: 172
Period size: 68 Copynumber: 2.1 Consensus size: 71
8661461 ATAATAAATC
* *
8661471 TATTAAATTAATAGAATACTTATCTACAAGATAAATATTAAATTAAATTTAATATTACAATAACC
1 TATTAAATTAATAAAATACTTATCTA-AAGATAAATATTAAATTAAATTTAATATTACAACAACC
***
8661536 ACTTTAA
65 AAAATAA
* **
8661543 TATTAAATTAATAAAATAC-TAT-T-GAGATAAATATTAAATTAAATTTAATATTGA-AACAATT
1 TATTAAATTAATAAAATACTTATCTAAAGATAAATATTAAATTAAATTTAATATT-ACAACAACC
8661604 AAAATAA
65 AAAATAA
8661611 TATTA
1 TATTA
8661616 TTTTTGGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
68 41 0.64
69 1 0.02
70 1 0.02
71 3 0.05
72 18 0.28
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.38
Consensus pattern (71 bp):
TATTAAATTAATAAAATACTTATCTAAAGATAAATATTAAATTAAATTTAATATTACAACAACCA
AAATAA
Found at i:8662039 original size:65 final size:65
Alignment explanation
Indices: 8661958--8662107 Score: 282
Period size: 65 Copynumber: 2.3 Consensus size: 65
8661948 GTCTGACTTG
*
8661958 AAAATTAATTTTCAAAAATATCATATTAATTTAAATTAATTTGATTAATTTAATTTTACTTAATC
1 AAAATTAATTTCCAAAAATATCATATTAATTTAAATTAATTTGATTAATTTAATTTTACTTAATC
8662023 AAAATTAATTTCCAAAAATATCATATTAATTTAAATTAATTTGATTAATTTAATTTTACTTAATC
1 AAAATTAATTTCCAAAAATATCATATTAATTTAAATTAATTTGATTAATTTAATTTTACTTAATC
8662088 AAAATTAATTTCCCAAAAAT
1 AAAATTAATTT-CCAAAAAT
8662108 CACATAGATT
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
65 75 0.90
66 8 0.10
ACGTcount: A:0.46, C:0.08, G:0.01, T:0.45
Consensus pattern (65 bp):
AAAATTAATTTCCAAAAATATCATATTAATTTAAATTAATTTGATTAATTTAATTTTACTTAATC
Found at i:8663395 original size:41 final size:41
Alignment explanation
Indices: 8663338--8663495 Score: 280
Period size: 41 Copynumber: 3.9 Consensus size: 41
8663328 TAACGTCATG
8663338 GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCT
1 GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCT
8663379 GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCT
1 GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCT
*
8663420 GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
1 GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCT
* * *
8663461 GGGCTTTAGCGGCGTTTTTGAACAAGTGCCGCTAA
1 GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAA
8663496 AAACATTTTA
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 113 1.00
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (41 bp):
GGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCT
Found at i:8663787 original size:14 final size:14
Alignment explanation
Indices: 8663768--8663901 Score: 83
Period size: 14 Copynumber: 9.4 Consensus size: 14
8663758 TATCACTACA
*
8663768 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
8663782 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* *
8663796 GTTTAGAGTTTAAG
1 GTTTAGGGTTTATG
**
8663810 GTTTA-GGTGTTACC
1 GTTTAGGGT-TTATG
* *
8663824 ATTTGAAGGTTTATG
1 GTTT-AGGGTTTATG
*
8663839 GATTATGGGTTTATG
1 GTTTA-GGGTTTATG
* *
8663854 GGTTATGGTTTATG
1 GTTTAGGGTTTATG
* *
8663868 GTTTATGGTTTAAAG
1 GTTTAGGGTTT-ATG
* *
8663883 G-TTGGGGTTTAAG
1 GTTTAGGGTTTATG
8663896 GTTTAG
1 GTTTAG
8663902 AGGGGGGTCG
Statistics
Matches: 93, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
13 6 0.06
14 63 0.68
15 21 0.23
16 3 0.03
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.46
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:8663860 original size:22 final size:21
Alignment explanation
Indices: 8663834--8663875 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
8663824 ATTTGAAGGT
8663834 TTATGGATTATGGGTTTATGGG
1 TTATGGATTAT-GGTTTATGGG
*
8663856 TTATGGTTTATGGTTTATGG
1 TTATGGATTATGGTTTATGG
8663876 TTTAAAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (21 bp):
TTATGGATTATGGTTTATGGG
Found at i:8663898 original size:7 final size:7
Alignment explanation
Indices: 8663768--8663879 Score: 75
Period size: 7 Copynumber: 15.7 Consensus size: 7
8663758 TATCACTACA
*
8663768 GTTTAGG
1 GTTTATG
*
8663775 GTTTTTG
1 GTTTATG
*
8663782 GTTTAGG
1 GTTTATG
*
8663789 GTATATG
1 GTTTATG
8663796 GTTTA-G
1 GTTTATG
*
8663802 AGTTTAAG
1 -GTTTATG
8663810 GTTTA-G
1 GTTTATG
**
8663816 GTGTTACC
1 GT-TTATG
* *
8663824 ATTTGAAG
1 GTTT-ATG
8663832 GTTTATG
1 GTTTATG
*
8663839 GATTATGG
1 GTTTAT-G
8663847 GTTTATG
1 GTTTATG
*
8663854 GGTTATG
1 GTTTATG
8663861 GTTTATG
1 GTTTATG
8663868 GTTTATG
1 GTTTATG
8663875 GTTTA
1 GTTTA
8663880 AAGGTTGGGG
Statistics
Matches: 82, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
6 4 0.05
7 66 0.80
8 12 0.15
ACGTcount: A:0.19, C:0.02, G:0.31, T:0.48
Consensus pattern (7 bp):
GTTTATG
Found at i:8664144 original size:7 final size:7
Alignment explanation
Indices: 8664132--8664195 Score: 51
Period size: 7 Copynumber: 9.0 Consensus size: 7
8664122 AGGGTTGGGA
8664132 TTTAAGG
1 TTTAAGG
8664139 TTTAAGG
1 TTTAAGG
8664146 TTTAAGG
1 TTTAAGG
* *
8664153 GTT-AGA
1 TTTAAGG
*
8664159 TGTTAGGG
1 T-TTAAGG
8664167 TTTAAGAG
1 TTTAAG-G
*
8664175 -TTAGGG
1 TTTAAGG
8664181 ATTTAAGG
1 -TTTAAGG
8664189 TTTAAGG
1 TTTAAGG
8664196 ATTCAGGGGT
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
6 3 0.07
7 33 0.75
8 8 0.18
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (7 bp):
TTTAAGG
Found at i:8664148 original size:28 final size:28
Alignment explanation
Indices: 8664116--8664172 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
8664106 TAGCGATTAT
*
8664116 GGTTTAAGGGTTGGGAT-TTAAGGTTTAA
1 GGTTTAAGGGTT-AGATGTTAAGGTTTAA
*
8664144 GGTTTAAGGGTTAGATGTTAGGGTTTAA
1 GGTTTAAGGGTTAGATGTTAAGGTTTAA
8664172 G
1 G
8664173 AGTTAGGGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 23 0.88
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.39
Consensus pattern (28 bp):
GGTTTAAGGGTTAGATGTTAAGGTTTAA
Found at i:8664170 original size:21 final size:21
Alignment explanation
Indices: 8664139--8664195 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
8664129 GGATTTAAGG
8664139 TTTAAGGTTTAAGGGTTA-GA
1 TTTAAGGTTTAAGGGTTAGGA
* *
8664159 TGTTAGGGTTTAAGAGTTAGGGA
1 T-TTAAGGTTTAAGGGTTA-GGA
8664182 TTTAAGGTTTAAGG
1 TTTAAGGTTTAAGG
8664196 ATTCAGGGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.03
21 15 0.50
22 11 0.37
23 3 0.10
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (21 bp):
TTTAAGGTTTAAGGGTTAGGA
Found at i:8664723 original size:20 final size:20
Alignment explanation
Indices: 8664694--8664737 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
8664684 AAAACGCCGC
*
8664694 AAAAATAAAT-CAATTTATA
1 AAAAATAAATAAAATTTATA
8664713 AAAAATAAAATAAAAATTTATA
1 AAAAAT-AAAT-AAAATTTATA
8664735 AAA
1 AAA
8664738 GGTAATCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 4 0.19
22 11 0.52
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAAATAAATAAAATTTATA
Found at i:8666462 original size:10 final size:10
Alignment explanation
Indices: 8666447--8666477 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8666437 TGTGGTGGAC
*
8666447 TTGCTTGACT
1 TTGCTTAACT
8666457 TTGCTTAACT
1 TTGCTTAACT
8666467 TTGCTTAACT
1 TTGCTTAACT
8666477 T
1 T
8666478 ACATTATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.16, C:0.19, G:0.13, T:0.52
Consensus pattern (10 bp):
TTGCTTAACT
Found at i:8668310 original size:15 final size:14
Alignment explanation
Indices: 8668277--8668303 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8668267 TATCATAGAA
8668277 ATAAAAATTATTTG
1 ATAAAAATTATTTG
8668291 ATAAAAATTATTT
1 ATAAAAATTATTT
8668304 TTTTAAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (14 bp):
ATAAAAATTATTTG
Found at i:8668424 original size:43 final size:43
Alignment explanation
Indices: 8668319--8668541 Score: 317
Period size: 43 Copynumber: 5.2 Consensus size: 43
8668309 AAGATATGTT
***
8668319 TTTAGCGGCGTTT-TCAAAAAAGCGCCGCTAAAGGTCTAT--TC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCT-TGGTC
** * * *
8668360 GATAGCGGCGTTTGTGTGAAAAGTGTCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
8668403 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
8668446 TTTAGCGGCGTTTGTGGGAATAGCGCCGCTAAAGGCCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
8668489 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
8668532 TTTAGTGGCG
1 TTTAGCGGCG
8668542 CTGTCATTAG
Statistics
Matches: 162, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
41 12 0.07
42 19 0.12
43 131 0.81
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:8671399 original size:50 final size:50
Alignment explanation
Indices: 8671342--8671442 Score: 168
Period size: 50 Copynumber: 2.0 Consensus size: 50
8671332 ATAGATTCAA
* *
8671342 TATTATGCCAATGAAATCTCAAATTCAA-TTCTATGAAGTATTTAACATTT
1 TATTATGCCAATGAAATCTCAAATTAAATTTC-ATGAAATATTTAACATTT
8671392 TATTATGCCAATGAAATCTCAAATTAAATTTCATGAAATATTTAACATTT
1 TATTATGCCAATGAAATCTCAAATTAAATTTCATGAAATATTTAACATTT
8671442 T
1 T
8671443 CACATTTAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 45 0.94
51 3 0.06
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.41
Consensus pattern (50 bp):
TATTATGCCAATGAAATCTCAAATTAAATTTCATGAAATATTTAACATTT
Found at i:8673895 original size:88 final size:88
Alignment explanation
Indices: 8673797--8673969 Score: 204
Period size: 88 Copynumber: 2.0 Consensus size: 88
8673787 TAATAATTTG
* * * * *
8673797 ATAATCTGTTTCAGGATTTAATCCTGTCGTTTAACAAATTTTATT-CTATTCTAATTTTGTTTCC
1 ATAATCTGTTTCAGGATTTAATCCAGCCGTTCAACAAATTTTATTCCT-TTCTAATATTATTTCC
*
8673861 AAATGAGAAATAATTGAATAATGA
65 AAACGAGAAATAATTGAATAATGA
* ** * * * * *
8673885 ATAATTTGTTTTGGGATTTAGTCCAGCCGTTCGACAGATTTTATTCCTTTTTGATATTATTTCCA
1 ATAATCTGTTTCAGGATTTAATCCAGCCGTTCAACAAATTTTATTCCTTTCTAATATTATTTCCA
8673950 AACGAGAAATAATTGAATAA
66 AACGAGAAATAATTGAATAA
8673970 ACTGTTTCGA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
88 68 0.97
89 2 0.03
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.42
Consensus pattern (88 bp):
ATAATCTGTTTCAGGATTTAATCCAGCCGTTCAACAAATTTTATTCCTTTCTAATATTATTTCCA
AACGAGAAATAATTGAATAATGA
Found at i:8673984 original size:81 final size:82
Alignment explanation
Indices: 8673877--8674068 Score: 210
Period size: 81 Copynumber: 2.4 Consensus size: 82
8673867 GAAATAATTG
* * * * *
8673877 AATAA-TGAATAATTTGTTTTGGGATTTAGTCCAGCCGTTCGACAGATTTTATTCCTTTTTGATA
1 AATAATTGAATAATCTGTTTCGAGATTTAGTCCAGCCGTTCAACAGATTTTATTCCATTTTGATA
8673941 TTATTTCCAAACG-AGA
66 TTATTTCCAAACGAAGA
* * * * ** *
8673957 AATAATTGAATAAACTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTGATTTTGATT
1 AATAATTGAATAATCTGTTTCGAGATTTAGTCCAGCCGTTCAACAGATTTTATTCCATTTTGATA
*
8674022 TTATTTCCAAATGAAGA
66 TTATTTCCAAACGAAGA
* *
8674039 ATTAATTAAATAATTCTGTTTC-AGGATTTA
1 AATAATTGAATAA-TCTGTTTCGA-GATTTA
8674069 TTCCGTCATT
Statistics
Matches: 92, Mismatches: 16, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
80 5 0.05
81 59 0.64
82 15 0.16
83 13 0.14
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (82 bp):
AATAATTGAATAATCTGTTTCGAGATTTAGTCCAGCCGTTCAACAGATTTTATTCCATTTTGATA
TTATTTCCAAACGAAGA
Found at i:8676932 original size:20 final size:20
Alignment explanation
Indices: 8676907--8676967 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
8676897 ATATTTCCTG
8676907 ATTTTATTTGATTCTAATCA
1 ATTTTATTTGATTCTAATCA
* *
8676927 ATTTTATTTGATTCCAATAA
1 ATTTTATTTGATTCTAATCA
* *
8676947 ATTTGATTTGATTTTAATCA
1 ATTTTATTTGATTCTAATCA
8676967 A
1 A
8676968 ATTGATTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.52
Consensus pattern (20 bp):
ATTTTATTTGATTCTAATCA
Found at i:8676972 original size:20 final size:20
Alignment explanation
Indices: 8676912--8676975 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
8676902 TCCTGATTTT
* *
8676912 ATTTGATTCTAATCAATTTT
1 ATTTGATTCTAATCAAATTG
*
8676932 ATTTGATTCCAAT-AAATTTG
1 ATTTGATTCTAATCAAA-TTG
*
8676952 ATTTGATTTTAATCAAATTG
1 ATTTGATTCTAATCAAATTG
8676972 ATTT
1 ATTT
8676976 AATTTCTCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 2 0.05
20 32 0.86
21 3 0.08
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.52
Consensus pattern (20 bp):
ATTTGATTCTAATCAAATTG
Found at i:8678330 original size:26 final size:26
Alignment explanation
Indices: 8678301--8678353 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8678291 TAGGGTTTGT
8678301 ACTGGTCTCGTGCATATAATTGTTTA
1 ACTGGTCTCGTGCATATAATTGTTTA
8678327 ACTGGTCTCGTGCATATAATTGTTTA
1 ACTGGTCTCGTGCATATAATTGTTTA
8678353 A
1 A
8678354 GTATTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (26 bp):
ACTGGTCTCGTGCATATAATTGTTTA
Found at i:8684312 original size:17 final size:17
Alignment explanation
Indices: 8684290--8684332 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
8684280 TCAGGGATGA
8684290 ACCTCGCCAAGTCATCT
1 ACCTCGCCAAGTCATCT
*
8684307 ACCTCGCCAATTCATCT
1 ACCTCGCCAAGTCATCT
8684324 ACCTCGCCA
1 ACCTCGCCA
8684333 TTGCCATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.23, C:0.44, G:0.09, T:0.23
Consensus pattern (17 bp):
ACCTCGCCAAGTCATCT
Found at i:8685047 original size:13 final size:13
Alignment explanation
Indices: 8685009--8685056 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 13
8684999 GGAGATCGCA
8685009 AAAACATAGCTTAT
1 AAAACATA-CTTAT
8685023 AAAACTATACTTAT
1 AAAAC-ATACTTAT
*
8685037 AAAACATACTT-G
1 AAAACATACTTAT
8685049 AAAACATA
1 AAAACATA
8685057 GGCTCGCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 8 0.25
13 6 0.19
14 15 0.47
15 3 0.09
ACGTcount: A:0.54, C:0.15, G:0.04, T:0.27
Consensus pattern (13 bp):
AAAACATACTTAT
Found at i:8694680 original size:20 final size:20
Alignment explanation
Indices: 8694629--8694682 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
8694619 CCAAGCCCGG
8694629 TTGGA-CCAATTTTTGGGTC
1 TTGGACCCAATTTTTGGGTC
* * * * *
8694648 TCGGTCTCGATTTTTGGTTC
1 TTGGACCCAATTTTTGGGTC
8694668 TTGGACCCAATTTTT
1 TTGGACCCAATTTTT
8694683 TATTTTAGGT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 3 0.12
20 22 0.88
ACGTcount: A:0.13, C:0.19, G:0.22, T:0.46
Consensus pattern (20 bp):
TTGGACCCAATTTTTGGGTC
Found at i:8699078 original size:66 final size:65
Alignment explanation
Indices: 8698955--8699085 Score: 149
Period size: 66 Copynumber: 2.0 Consensus size: 65
8698945 TATTGAAATG
** *
8698955 TGAGAAATTGATTTGTACTGTTTGTTGAGCATTACTCATCTACTGTGACCTTTGATTGATAGGAA
1 TGAGAAATTGATTTGTAC-GTTTGTTGAGCATTACTCATCTACTGTGACCTGCGATTGACAGGAA
8699020 A
65 A
* ** *
8699021 TGAGAAATTGATTTGTA-GTATTGTTTGAGCATTACTTA-CTTGTTGTGAGCTGCGATTGACAGG
1 TGAGAAATTGATTTGTACGT-TTG-TTGAGCATTACTCATC-TACTGTGACCTGCGATTGACAGG
8699084 AA
63 AA
8699086 CTCTGTTAGT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
64 2 0.04
65 4 0.07
66 49 0.89
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.39
Consensus pattern (65 bp):
TGAGAAATTGATTTGTACGTTTGTTGAGCATTACTCATCTACTGTGACCTGCGATTGACAGGAAA
Found at i:8699852 original size:21 final size:21
Alignment explanation
Indices: 8699826--8699879 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
8699816 TGAGTTACAC
8699826 GGGTAGACACACGGGCGTGTG
1 GGGTAGACACACGGGCGTGTG
*
8699847 GGGTAGACACATGGGCGTGTG
1 GGGTAGACACACGGGCGTGTG
* *
8699868 GGATAGCCACAC
1 GGGTAGACACAC
8699880 AGTTTGGACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.22, C:0.20, G:0.43, T:0.15
Consensus pattern (21 bp):
GGGTAGACACACGGGCGTGTG
Found at i:8702878 original size:37 final size:37
Alignment explanation
Indices: 8702824--8702938 Score: 194
Period size: 37 Copynumber: 3.1 Consensus size: 37
8702814 AACCAACCAA
*
8702824 AACATGCCAAACACTCATGAGAGCTAATCCAATCGAT
1 AACATGCCAAACGCTCATGAGAGCTAATCCAATCGAT
*
8702861 AACATGCCAAACGCTCATGAGAGCTAATCCAACCGAT
1 AACATGCCAAACGCTCATGAGAGCTAATCCAATCGAT
* *
8702898 AACACGCCAAACGCTAATGAGAGCTAATCCAATCGAT
1 AACATGCCAAACGCTCATGAGAGCTAATCCAATCGAT
8702935 AACA
1 AACA
8702939 CACCTCGACA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.41, C:0.28, G:0.15, T:0.17
Consensus pattern (37 bp):
AACATGCCAAACGCTCATGAGAGCTAATCCAATCGAT
Found at i:8710484 original size:16 final size:17
Alignment explanation
Indices: 8710463--8710494 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8710453 AGATGAGAGC
8710463 TTTTTCTTAA-CTATCA
1 TTTTTCTTAACCTATCA
8710479 TTTTTCTTAACCTATC
1 TTTTTCTTAACCTATC
8710495 TTTGGGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTCTTAACCTATCA
Found at i:8710751 original size:15 final size:16
Alignment explanation
Indices: 8710731--8710763 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8710721 GATTTCTAGG
*
8710731 TTAAATTTTATTT-TA
1 TTAAATGTTATTTCTA
8710746 TTAAATGTTATTTCTA
1 TTAAATGTTATTTCTA
8710762 TT
1 TT
8710764 GTTTAATCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (16 bp):
TTAAATGTTATTTCTA
Found at i:8712586 original size:28 final size:28
Alignment explanation
Indices: 8712554--8712612 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
8712544 TCTACGACCG
8712554 TACAAAGCTTCGTATGGTGCCATATTTA
1 TACAAAGCTTCGTATGGTGCCATATTTA
* ** * *
8712582 TACAAATCTTTTTTTGGTGCCATCTTTA
1 TACAAAGCTTCGTATGGTGCCATATTTA
8712610 TAC
1 TAC
8712613 TTGATACAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (28 bp):
TACAAAGCTTCGTATGGTGCCATATTTA
Found at i:8716263 original size:49 final size:48
Alignment explanation
Indices: 8716142--8716263 Score: 129
Period size: 49 Copynumber: 2.5 Consensus size: 48
8716132 CTTCTAAGGT
* * *
8716142 ATGTTAGTTGCTAACTAGAATGGGGAAGAAATGGGCCACTGGTAGGGC
1 ATGTTAGTTGCTAACTAGAATGGCGAAGAAATAGGCCACTAGTAGGGC
* ** * * *
8716190 AAGTTAGTTATTAACCA-AATTGGCGTATAAGATAGGCCACTAGTAGGGC
1 ATGTTAGTTGCTAACTAGAA-TGGCGAAGAA-ATAGGCCACTAGTAGGGC
*
8716239 ATGTTAATTGCTAACTAGAATGGCG
1 ATGTTAGTTGCTAACTAGAATGGCG
8716264 GATATGCTGG
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
47 2 0.04
48 20 0.35
49 33 0.58
50 2 0.04
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (48 bp):
ATGTTAGTTGCTAACTAGAATGGCGAAGAAATAGGCCACTAGTAGGGC
Found at i:8720811 original size:21 final size:21
Alignment explanation
Indices: 8720787--8720826 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8720777 TGCGTTTGAT
8720787 TTTGGTGTGGATGCATCTGGC
1 TTTGGTGTGGATGCATCTGGC
* *
8720808 TTTGTTGTGGATGTATCTG
1 TTTGGTGTGGATGCATCTG
8720827 AGAGTGCTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.10, G:0.35, T:0.45
Consensus pattern (21 bp):
TTTGGTGTGGATGCATCTGGC
Found at i:8732554 original size:54 final size:55
Alignment explanation
Indices: 8732479--8732588 Score: 152
Period size: 54 Copynumber: 2.0 Consensus size: 55
8732469 TGTGGTGAGG
* * *
8732479 CCGTGTAACCTTCAAACTAGGGACATACGGCCTTGTCCCA-GCTTGTGTCCTCAC
1 CCGTGTAACCTTCAAACTAGGGACACACAGCCTTGTCACATGCTTGTGTCCTCAC
* *
8732533 CCGTGTAACTTTCTAAA-TAGGGTCACACAGCCTTGTCACATGCTTGTGTCCTCAC
1 CCGTGTAACCTTC-AAACTAGGGACACACAGCCTTGTCACATGCTTGTGTCCTCAC
8732588 C
1 C
8732589 TAAGGAACTC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (55 bp):
CCGTGTAACCTTCAAACTAGGGACACACAGCCTTGTCACATGCTTGTGTCCTCAC
Found at i:8733387 original size:28 final size:23
Alignment explanation
Indices: 8733326--8733378 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
8733316 TAATATAAAG
8733326 CATAAGCATAATATAACCCAAAC
1 CATAAGCATAATATAACCCAAAC
8733349 CATAAGCATAATATAACCCAAAC
1 CATAAGCATAATATAACCCAAAC
8733372 CATAAGC
1 CATAAGC
8733379 TTGGCATAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.51, C:0.26, G:0.06, T:0.17
Consensus pattern (23 bp):
CATAAGCATAATATAACCCAAAC
Found at i:8735111 original size:22 final size:22
Alignment explanation
Indices: 8735070--8735111 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8735060 ACACCAAAAC
* * *
8735070 AGGCTTTTAGCGGTGCTTTTTT
1 AGGCCTTTAGCGGCGATTTTTT
8735092 AGGCCTTTAGCGGCGATTTT
1 AGGCCTTTAGCGGCGATTTT
8735112 CAGCGCCGCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.17, G:0.29, T:0.43
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGATTTTTT
Found at i:8735218 original size:43 final size:43
Alignment explanation
Indices: 8735170--8735350 Score: 123
Period size: 43 Copynumber: 4.2 Consensus size: 43
8735160 CGTCGCTAAG
* * *
8735170 TTTAGCGGCATTTTTAGAAAAAACGCCGCTAAAGACCAAGACC
1 TTTAGCGGCACTATTACAAAAAACGCCGCTAAAGACCAAGACC
* * * * * *
8735213 TTTAGCGGCGCTATTACCACAAACGCCGCTACAGGCCATGACC
1 TTTAGCGGCACTATTACAAAAAACGCCGCTAAAGACCAAGACC
* * * * ** * **
8735256 TTTAGCGGCGCT-TTCACCACAAACGCCACTAAAGGTCATGGTC
1 TTTAGCGGCACTATT-ACAAAAAACGCCGCTAAAGACCAAGACC
* * * *
8735299 TTTAGCGGCACT-TTCACCACAAACGCCACTAAAGACCATGACC
1 TTTAGCGGCACTATT-ACAAAAAACGCCGCTAAAGACCAAGACC
*
8735342 TTTTGCGGC
1 TTTAGCGGC
8735351 GTTTTCCCCA
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
42 2 0.02
43 115 0.98
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (43 bp):
TTTAGCGGCACTATTACAAAAAACGCCGCTAAAGACCAAGACC
Found at i:8735362 original size:43 final size:43
Alignment explanation
Indices: 8735190--8735478 Score: 287
Period size: 43 Copynumber: 6.7 Consensus size: 43
8735180 TTTTTAGAAA
*
8735190 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTATT-ACCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCT-TTCACCAC
* *
8735233 AAACGCCGCTACAGGCCATGACCTTTAGCGGCGCTTTCACCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTCACCAC
* ** ** *
8735276 AAACGCCACTAAAGGTCATGGTCTTTAGCGGCACTTTCACCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTCACCAC
* * * *
8735319 AAACGCCACTAAAGACCATGACCTTTTGCGGCGTTTTCCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTCACCAC
* * ** * *
8735362 AAACACCGCTAAAGGTCCATGGTCTTTAGCGGCGCTTGC-CAAAC
1 AAACGCCGCTAAA-GACCATGACCTTTAGCGGCGCTTTCAC-CAC
* * * *
8735406 AAACGTCGCTAAAGACCCTGATCTTTAGCGGCGCTTTTC-CTAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTCACCAC
* * *
8735449 AAACGCCGCAAAAGACCCTTACCTTTAGCG
1 AAACGCCGCTAAAGACCATGACCTTTAGCG
8735479 TCATTTTTTT
Statistics
Matches: 205, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.01
43 167 0.81
44 36 0.18
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTCACCAC
Found at i:8735437 original size:87 final size:86
Alignment explanation
Indices: 8735231--8735462 Score: 279
Period size: 87 Copynumber: 2.7 Consensus size: 86
8735221 CGCTATTACC
* * * * *
8735231 ACAAACGCCGCTACAGGCCATGACCTTTAGCGGCGCTTTCACCACAAACGCCACTAAAGGTCATG
1 ACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGTTTTCCCCACAAACGCCGCTAAAGGTCATG
* *
8735296 GTCTTTAGCGGCACTTTCACC
66 GTCTTTAGCGGCACTTCCACA
* * *
8735317 ACAAACGCCACTAAAGACCATGACCTTTTGCGGCGTTTTCCCCACAAACACCGCTAAAGGTCCAT
1 ACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGTTTTCCCCACAAACGCCGCTAAAGGT-CAT
*
8735382 GGTCTTTAGCGGCGCTTGCCA-A
65 GGTCTTTAGCGGCACTT-CCACA
* * * * *
8735404 ACAAACGTCGCTAAAGACCCTGATCTTTAGCGGCGCTTTT-CCTACAAACGCCGCAAAAG
1 ACAAACGCCGCTAAAGACCATGACCTTTAGCGGCG-TTTTCCCCACAAACGCCGCTAAAG
8735463 ACCCTTACCT
Statistics
Matches: 124, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
86 53 0.43
87 65 0.52
88 6 0.05
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.21
Consensus pattern (86 bp):
ACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGTTTTCCCCACAAACGCCGCTAAAGGTCATG
GTCTTTAGCGGCACTTCCACA
Found at i:8735451 original size:130 final size:129
Alignment explanation
Indices: 8735190--8735478 Score: 323
Period size: 130 Copynumber: 2.2 Consensus size: 129
8735180 TTTTTAGAAA
* * *
8735190 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTATTACCACAAACGCCGCTACAGGCCATGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTATTACCACAAACACCGCTAAAGGCCATGAC
* * ** *
8735255 CTTTAGCGGCGCTTTCACCACAAACGCCACTAAAGGTCATGGTCTTTAGCGGCACTTTCACCAC
66 CTTTAGCGGCGCTTCCACAACAAACGCCACTAAAGACCATGATCTTTAGCGGCACTTTCACCAC
* * * *
8735319 AAACGCCACTAAAGACCATGACCTTTTGCGGCG-TTTTCCCCACAAACACCGCTAAAGGTCCATG
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTATT-ACCACAAACACCGCTAAAGG-CCATG
** * * * *
8735383 GTCTTTAGCGGCGCTTGCCA-AACAAACGTCGCTAAAGACCCTGATCTTTAGCGGCGCTTTTC-C
64 ACCTTTAGCGGCGCTT-CCACAACAAACGCCACTAAAGACCATGATCTTTAGCGGCAC-TTTCAC
*
8735446 TAC
127 CAC
* * *
8735449 AAACGCCGCAAAAGACCCTTACCTTTAGCG
1 AAACGCCGCTAAAGACCATGACCTTTAGCG
8735479 TCATTTTTTT
Statistics
Matches: 132, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
128 3 0.02
129 47 0.36
130 76 0.58
131 6 0.05
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (129 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTATTACCACAAACACCGCTAAAGGCCATGAC
CTTTAGCGGCGCTTCCACAACAAACGCCACTAAAGACCATGATCTTTAGCGGCACTTTCACCAC
Found at i:8735853 original size:21 final size:21
Alignment explanation
Indices: 8735824--8735869 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
8735814 TTCTACGCTG
* * **
8735824 CTCTGCTTCCTTCGCTGTAGC
1 CTCTACTTCCCTCGCTACAGC
8735845 CTCTACTTCCCTCGCTACAGC
1 CTCTACTTCCCTCGCTACAGC
8735866 CTCT
1 CTCT
8735870 GGTTTAAGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.09, C:0.43, G:0.13, T:0.35
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTACAGC
Found at i:8735961 original size:66 final size:66
Alignment explanation
Indices: 8735885--8736011 Score: 202
Period size: 66 Copynumber: 1.9 Consensus size: 66
8735875 AAGCTGCAGG
* * *
8735885 TGGAGTTCTTCATA-CTTTCTTTGAACCTCAGCTTCTCTCGCTGTTGCATCTGCTTTAAGTTTTA
1 TGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTTTA
8735949 GC
65 GC
*
8735951 TGGAGTTCTTCATATCTTTTTTGAACCTCAGCTTCTCTCGATGCTGCCTCCGCTTTAAGTT
1 TGGAGTTCTTCATATCTTTTTTGAACCTCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTT
8736012 GTGTAATTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
66 52 0.93
67 4 0.07
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.43
Consensus pattern (66 bp):
TGGAGTTCTTCATATCTTTTTTGAACCTCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTTTAG
C
Found at i:8741047 original size:16 final size:16
Alignment explanation
Indices: 8741026--8741189 Score: 102
Period size: 16 Copynumber: 9.9 Consensus size: 16
8741016 GCTTGGAAAT
*
8741026 TTATGTATTATATAAG
1 TTATGTATTATGTAAG
* **
8741042 TTATGTAAGT-TGTATT
1 TTATGT-ATTATGTAAG
*
8741058 TTATGTTAGTTAT-TTA-
1 TTATG-TA-TTATGTAAG
8741074 TTATGTAAGTTATGTAAG
1 TTATGT-A-TTATGTAAG
*
8741092 TTGTGTATTATGTAAG
1 TTATGTATTATGTAAG
* *
8741108 CTATGTATTATGTTAG
1 TTATGTATTATGTAAG
*
8741124 TTTTATGTAAGT-TGTAAG
1 --TTATGT-ATTATGTAAG
*
8741142 TTGTGTATTATGTAAG
1 TTATGTATTATGTAAG
* *
8741158 CTATGTATTATGTTAG
1 TTATGTATTATGTAAG
8741174 TTATGTCACTTATGTA
1 TTATGT-A-TTATGTA
8741190 TTATGCATGT
Statistics
Matches: 113, Mismatches: 22, Indels: 24
0.71 0.14 0.15
Matches are distributed among these distances:
15 3 0.03
16 77 0.68
17 9 0.08
18 22 0.19
19 2 0.02
ACGTcount: A:0.27, C:0.02, G:0.19, T:0.51
Consensus pattern (16 bp):
TTATGTATTATGTAAG
Found at i:8741080 original size:25 final size:25
Alignment explanation
Indices: 8741058--8741354 Score: 112
Period size: 25 Copynumber: 11.6 Consensus size: 25
8741048 AAGTTGTATT
* *
8741058 TTATGTTAGTTATTTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
*
8741083 TTATGTAAGTTGTGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
8741108 CTATGTATTATGTTA-GTTTTATGTAAG
1 TTATGTA--A-GTTATGTATTATGTAAG
*
8741135 -T-TGTAAGTTGTGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * *
8741158 CTATGT-A-TTATGTTAGTTATGTCAC
1 TTATGTAAGTTATG-TA-TTATGTAAG
*
8741183 TTATGT-A-TTATGCATGTCATGTAAG
1 TTATGTAAGTTATGTAT-T-ATGTAAG
* *
8741208 TTGTGTAGAG--A-GTAAGCTATGTAAG
1 TTATGTA-AGTTATGT-A-TTATGTAAG
* * * *
8741233 TTATGTGAGTTATATATAAGTTATCTTAATAA
1 TTATGTAAG-T-TATGT-A-TTAT-GT-A-AG
* * *
8741265 TTATATAAGCTATGTATTATGTTAG
1 TTATGTAAGTTATGTATTATGTAAG
*
8741290 TTATGCT-AGTTATGTATTATGTATG
1 TTATG-TAAGTTATGTATTATGTAAG
* * **
8741315 TTTTGTAAGTTGTGTAGAATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * *
8741340 CTACGTTAGTTATGT
1 TTATGTAAGTTATGT
8741355 TAGAAATTTT
Statistics
Matches: 202, Mismatches: 45, Indels: 50
0.68 0.15 0.17
Matches are distributed among these distances:
22 3 0.01
23 17 0.08
24 9 0.04
25 124 0.61
26 5 0.02
27 14 0.07
28 8 0.04
29 8 0.04
30 5 0.02
31 1 0.00
32 8 0.04
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTAAG
Found at i:8741085 original size:41 final size:41
Alignment explanation
Indices: 8741026--8741211 Score: 147
Period size: 41 Copynumber: 4.7 Consensus size: 41
8741016 GCTTGGAAAT
* * *
8741026 TTATGTATTATATAAGTTATGTAAGTTGTATTTTATGTTAG
1 TTATGTATTATGTAAGTTATGTAAGTTGTATATTATGTAAG
* *
8741067 TTATTTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAGTTGTATATTATGTAAG
* * *
8741108 CTATGTATTATGTTAGTT-T-T-A--TGTA-AGT-TGTAAG
1 TTATGTATTATGTAAGTTATGTAAGTTGTATATTATGTAAG
* * * * *
8741142 TTGTGTATTATGTAAGCTATGT-ATTATGT-TAGTTATGTCAC
1 TTATGTATTATGTAAGTTATGTAAGT-TGTATA-TTATGTAAG
* * *
8741183 TTATGTATTATGCATGTCATGTAAGTTGT
1 TTATGTATTATGTAAGTTATGTAAGTTGT
8741212 GTAGAGAGTA
Statistics
Matches: 113, Mismatches: 23, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
34 20 0.18
35 3 0.03
36 5 0.04
38 1 0.01
39 5 0.04
40 2 0.02
41 75 0.66
42 2 0.02
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.51
Consensus pattern (41 bp):
TTATGTATTATGTAAGTTATGTAAGTTGTATATTATGTAAG
Found at i:8741113 original size:50 final size:50
Alignment explanation
Indices: 8741059--8741189 Score: 155
Period size: 50 Copynumber: 2.6 Consensus size: 50
8741049 AGTTGTATTT
8741059 TATGTTAGTTATTTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGC
1 TATGTTAGTTATTTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGC
*
8741109 TATGTATTATGTTAGTT-TTATGTAAG-T-TGTAAGTTGTGTATTATGTAAGC
1 TATG--TTA-GTTATTTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGC
* *
8741159 TATG-TA-TTATGTTAGTTATGTCACTTATGTA
1 TATGTTAGTTAT-TTA-TTATGTAAGTTATGTA
8741190 TTATGCATGT
Statistics
Matches: 69, Mismatches: 4, Indels: 16
0.78 0.04 0.18
Matches are distributed among these distances:
45 3 0.04
46 2 0.03
47 2 0.03
48 7 0.10
49 1 0.01
50 35 0.51
51 1 0.01
52 12 0.17
53 6 0.09
ACGTcount: A:0.27, C:0.03, G:0.20, T:0.50
Consensus pattern (50 bp):
TATGTTAGTTATTTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGC
Found at i:8741402 original size:128 final size:128
Alignment explanation
Indices: 8741247--8742048 Score: 1595
Period size: 128 Copynumber: 6.3 Consensus size: 128
8741237 GTGAGTTATA
8741247 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
1 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
8741312 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
66 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
8741375 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
1 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
8741440 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
66 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
8741503 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
1 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
8741568 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
66 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
8741631 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
1 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
8741696 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
66 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
8741759 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
1 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
8741824 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
66 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
8741887 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
1 TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
8741952 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
66 ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
*
8742015 TATAAGTTATCTTAATAATTATATAAGTTATGTA
1 TATAAGTTATCTTAATAATTATATAAGCTATGTA
8742049 ATTAGAAATT
Statistics
Matches: 673, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
128 673 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (128 bp):
TATAAGTTATCTTAATAATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGT
ATGTTTTGTAAGTTGTGTAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATAT
Found at i:8741851 original size:384 final size:384
Alignment explanation
Indices: 8741148--8742048 Score: 1605
Period size: 384 Copynumber: 2.4 Consensus size: 384
8741138 TAAGTTGTGT
* * * **
8741148 ATTATGTAAGCTATGTATTATGTTAGTTATG-TCACTTATGTATTATGCATGTCATGTAAGTTGT
1 ATTATATAAGCTATGTATTATGTTAGTTATGCT-AGTTATGTATTATGTATGTTTTGTAAGTTGT
* * *
8741212 GTAGAGA-GTAAGCTATGTAAGTTATG-T-G-------A-GTT-ATA-TATAAGTTATCTTAATA
65 GTAGA-ATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATA
8741264 ATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTG
129 ATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTG
8741329 TAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAAT
194 TAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAAT
8741394 TATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTGTA
259 TATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTGTA
8741459 GAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATA
324 GAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATA
8741520 ATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTG
1 ATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTG
8741585 TAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAAT
66 TAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAAT
8741650 TATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTGTA
131 TATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTGTA
8741715 GAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAATTA
196 GAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAATTA
8741780 TATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTGTAGA
261 TATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTGTAGA
8741845 ATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATA
326 ATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATA
8741904 ATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTG
1 ATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTG
8741969 TAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAAT
66 TAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAAT
*
8742034 TATATAAGTTATGTA
131 TATATAAGCTATGTA
8742049 ATTAGAAATT
Statistics
Matches: 506, Mismatches: 9, Indels: 16
0.95 0.02 0.03
Matches are distributed among these distances:
371 1 0.00
372 79 0.16
373 2 0.00
374 1 0.00
381 1 0.00
382 2 0.00
383 3 0.01
384 417 0.82
ACGTcount: A:0.32, C:0.04, G:0.17, T:0.47
Consensus pattern (384 bp):
ATTATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTG
TAGAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAAT
TATATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTGTA
GAATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATAATTA
TATAAGCTATGTATTATGTTAGTTATGCTAGTTATGTATTATGTATGTTTTGTAAGTTGTGTAGA
ATGTAAGCTACGTTAGTTATGTTAGAAATTTTATATTAATATTATAAGTTATCTTAATA
Found at i:8745238 original size:20 final size:20
Alignment explanation
Indices: 8745213--8745255 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8745203 NNNNNNATAC
8745213 TATATAAGTAATCTTAATAT
1 TATATAAGTAATCTTAATAT
* * *
8745233 TATATAGGTTATCTTAATTT
1 TATATAAGTAATCTTAATAT
8745253 TAT
1 TAT
8745256 GTAATTAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (20 bp):
TATATAAGTAATCTTAATAT
Found at i:8745327 original size:16 final size:17
Alignment explanation
Indices: 8745306--8745337 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8745296 TATTATATAA
8745306 TATAAGTTAT-TAATTG
1 TATAAGTTATGTAATTG
8745322 TATAAGTTATGTAATT
1 TATAAGTTATGTAATT
8745338 AGAAATTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (17 bp):
TATAAGTTATGTAATTG
Found at i:8745378 original size:20 final size:20
Alignment explanation
Indices: 8745349--8745388 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8745339 GAAATTGTCG
8745349 TAATACTATATAAGTAATCT
1 TAATACTATATAAGTAATCT
* *
8745369 TAATATTATATAAGTTATCT
1 TAATACTATATAAGTAATCT
8745389 GAATTTTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.45
Consensus pattern (20 bp):
TAATACTATATAAGTAATCT
Found at i:8745397 original size:20 final size:20
Alignment explanation
Indices: 8745350--8745397 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8745340 AAATTGTCGT
* *
8745350 AATACTATATAAGTAATCTT
1 AATATTATATAAGTAATCTG
*
8745370 AATATTATATAAGTTATCTG
1 AATATTATATAAGTAATCTG
*
8745390 AATTTTAT
1 AATATTAT
8745398 GTAATTAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (20 bp):
AATATTATATAAGTAATCTG
Found at i:8745733 original size:22 final size:22
Alignment explanation
Indices: 8745708--8745776 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 22
8745698 ACTTTAAAAC
8745708 AAATAAAAAATTACTTTGAATT
1 AAATAAAAAATTACTTTGAATT
8745730 AAAT--AAAA-TA-TTT-AATT
1 AAATAAAAAATTACTTTGAATT
* *
8745747 ATATAAATTAAATAACTTTGAATT
1 AAATAAA--AAATTACTTTGAATT
8745771 AAATAA
1 AAATAA
8745777 CTTTGAATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
17 7 0.19
18 3 0.08
19 3 0.08
20 4 0.11
21 3 0.08
22 5 0.14
23 3 0.08
24 9 0.24
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (22 bp):
AAATAAAAAATTACTTTGAATT
Found at i:8745772 original size:15 final size:15
Alignment explanation
Indices: 8745752--8745785 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
8745742 TAATTATATA
8745752 AATTAAATAACTTTG
1 AATTAAATAACTTTG
8745767 AATTAAATAACTTTG
1 AATTAAATAACTTTG
8745782 AATT
1 AATT
8745786 CTGTCGTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (15 bp):
AATTAAATAACTTTG
Found at i:8746629 original size:22 final size:23
Alignment explanation
Indices: 8746604--8746651 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
8746594 AGTATCAATT
8746604 GATAAAG-T-CAAGTGAAACATAA
1 GATAAAGTTGCAAGT-AAACATAA
*
8746626 GATAAAGTTGCATGTAAACATAA
1 GATAAAGTTGCAAGTAAACATAA
8746649 GAT
1 GAT
8746652 CAACTAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 7 0.30
23 12 0.52
24 4 0.17
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.23
Consensus pattern (23 bp):
GATAAAGTTGCAAGTAAACATAA
Found at i:8748167 original size:16 final size:16
Alignment explanation
Indices: 8748146--8748178 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8748136 ATAAAATACA
*
8748146 ATTAATTGTATCTTTT
1 ATTAATTGCATCTTTT
8748162 ATTAATTGCATCTTTT
1 ATTAATTGCATCTTTT
8748178 A
1 A
8748179 ATTACTAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (16 bp):
ATTAATTGCATCTTTT
Found at i:8749222 original size:41 final size:40
Alignment explanation
Indices: 8749141--8749415 Score: 221
Period size: 41 Copynumber: 6.8 Consensus size: 40
8749131 AAATGTTTTT
*
8749141 GCGGCGCTTCT-TCAAAAACGCCGCT---GGCCCGAGCATTA
1 GCGGCGTTTCTCT-AAAAACGCCGCTAAAGG-CCGAGCATTA
*
8749179 GCGGCGTTTCTCTAAAAACACCGCTAAAGGACCGAGCATTA
1 GCGGCGTTTCTCTAAAAACGCCGCTAAAGG-CCGAGCATTA
*
8749220 GCGGCGCATTT-TC-AAAAACGCCGCTAAAGGCCTAAGCATTA
1 GCGGCG--TTTCTCTAAAAACGCCGCTAAAGGCC-GAGCATTA
* *
8749261 GTGGCAAATTT-TC-AAAAACGCCGCTAAAGGCTCGAGCATTA
1 GCGGC--GTTTCTCTAAAAACGCCGCTAAAGGC-CGAGCATTA
* * * *
8749302 GTGGCGCTCCT-TCAAAAACGTCGCTAAAGGCCTGAGCATTA
1 GCGGCGTTTCTCT-AAAAACGCCGCTAAAGGCC-GAGCATTA
* *
8749343 GTGGTGTTTCTCTAAAAACGCCGCTAAAGGACCGAGCATTA
1 GCGGCGTTTCTCTAAAAACGCCGCTAAAGG-CCGAGCATTA
* * *
8749384 GCTGTGCATCT-TC-AAAAATGCCGCTAAAGGCC
1 GC-G-GCGTTTCTCTAAAAACGCCGCTAAAGGCC
8749416 CCAAAAAGTC
Statistics
Matches: 198, Mismatches: 21, Indels: 34
0.78 0.08 0.13
Matches are distributed among these distances:
38 21 0.11
39 2 0.01
40 6 0.03
41 154 0.78
42 9 0.05
43 6 0.03
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
GCGGCGTTTCTCTAAAAACGCCGCTAAAGGCCGAGCATTA
Found at i:8749288 original size:82 final size:82
Alignment explanation
Indices: 8749141--8749415 Score: 321
Period size: 82 Copynumber: 3.4 Consensus size: 82
8749131 AAATGTTTTT
* ** * ** *
8749141 GCGGCGCTTCTTCAAAAACGCCGCT---GGCCCGAGCATTAGCGGCGTTTCTCTAAAAACACCGC
1 GCGGCGCATCTTCAAAAACGCCGCTAAAGGCCTAAGCATTAGTGGAATTTCTCTAAAAACGCCGC
8749203 TAAAGGACCGAGCATTA
66 TAAAGGACCGAGCATTA
*
8749220 GCGGCGCATTTTCAAAAACGCCGCTAAAGGCCTAAGCATTAGTGGCAAATTT-TC-AAAAACGCC
1 GCGGCGCATCTTCAAAAACGCCGCTAAAGGCCTAAGCATTAGTGG--AATTTCTCTAAAAACGCC
8749283 GCTAAAGG-CTCGAGCATTA
64 GCTAAAGGAC-CGAGCATTA
* * * **
8749302 GTGGCGC-TCCTTCAAAAACGTCGCTAAAGGCCTGAGCATTAGTGGTGTTTCTCTAAAAACGCCG
1 GCGGCGCAT-CTTCAAAAACGCCGCTAAAGGCCTAAGCATTAGTGGAATTTCTCTAAAAACGCCG
8749366 CTAAAGGACCGAGCATTA
65 CTAAAGGACCGAGCATTA
* * *
8749384 GCTGTGCATCTTCAAAAATGCCGCTAAAGGCC
1 GCGGCGCATCTTCAAAAACGCCGCTAAAGGCC
8749416 CCAAAAAGTC
Statistics
Matches: 166, Mismatches: 19, Indels: 19
0.81 0.09 0.09
Matches are distributed among these distances:
79 23 0.14
80 3 0.02
81 4 0.02
82 129 0.78
83 4 0.02
84 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (82 bp):
GCGGCGCATCTTCAAAAACGCCGCTAAAGGCCTAAGCATTAGTGGAATTTCTCTAAAAACGCCGC
TAAAGGACCGAGCATTA
Found at i:8749398 original size:123 final size:121
Alignment explanation
Indices: 8749149--8749416 Score: 300
Period size: 123 Copynumber: 2.2 Consensus size: 121
8749139 TTGCGGCGCT
* *
8749149 TCTTCAAAAACGCCGCT---GGCCCGAGCATTAGCGGCGTTTCTCTAAAAACACCGCTAAAGGAC
1 TCTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTCCTCTAAAAACACCGCTAAAGGAC
8749211 CGAGCATTAGCGGCGCATTTTCAAAAACGCCGCTAAAGGCCTAAGCATTAGTGGCAAA
66 CGAGCATTAGCGGCG-ATTTTCAAAAACGCCGCTAAAGGCCTAAGCATTAGTGGC-AA
* * * **
8749269 TTTTCAAAAACGCCGCTAAAGGCTCGAGCATTAGTGGCGCTCCT-TCAAAAACGTCGCTAAAGG-
1 TCTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTCCTCT-AAAAACACCGCTAAAGGA
* * *
8749332 CCTGAGCATTAGTGGTG-TTTCTCTAAAAACGCCGCTAAAGGACC-GAGCATTAGCTGTGC-A
65 CC-GAGCATTAGCGGCGATTT-TC-AAAAACGCCGCTAAAGG-CCTAAGCATTAG-TG-GCAA
*
8749392 TCTTCAAAAATGCCGCTAAAGGCCC
1 TCTTCAAAAACGCCGCTAAAGGCCC
8749417 CAAAAAGTCA
Statistics
Matches: 125, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
120 16 0.13
121 3 0.02
122 5 0.04
123 95 0.76
124 4 0.03
125 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.21
Consensus pattern (121 bp):
TCTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTCCTCTAAAAACACCGCTAAAGGAC
CGAGCATTAGCGGCGATTTTCAAAAACGCCGCTAAAGGCCTAAGCATTAGTGGCAA
Found at i:8753787 original size:735 final size:736
Alignment explanation
Indices: 8752376--8754059 Score: 2908
Period size: 735 Copynumber: 2.3 Consensus size: 736
8752366 TTGTGGTACC
8752376 TTATATGGCATATTAGTTTAATGAAATTTGGTCATTTGAATTGGTCATATTATGTATGTTTAGGT
1 TTATATGGCATATTAGTTTAATGAAATTTGGTCATTTGAATTGGTCATATTATGTATGTTTAGGT
* *
8752441 ATGTTTTAAGGTCTTAATTATATGTGCAAGCTAATTGTAGGTTCAATCTTGAATGGGTGAAAGAA
66 ATGTTTTAAGGTCTTAATTATATGTGCAAGTTAATTGTAGGTTCAAGCTTGAATGGGTGAAAGAA
* *
8752506 ATGGCTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGGGGAG-GTGTCACAACCA
131 ATTGCTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGGGG-GTGTGTCACAACCG
*
8752570 TGTGTGACACACAACCATGCGACACGACCGTGTATCCCCTGTAGGTTTTAAAGGTTGGTTTTCAA
195 TGTGTGACACACAACCATGCGACACGACCGTGTATCCCCTGTAGGTTTTAAAGGTTGCTTTTCAA
* * *
8752635 AAGTTACACGACCTGGCACACGGGCGTGCAAGGTCATCTTGAATGTTGACCATGTAATCCAAGTT
260 AAGTAACACGACCTGGCACACGGGCGTGCAAGGTCATCTTGAAGGTTGACCATGTAATCCAAGTC
*
8752700 AAAGAGTTACATGAGCACGGACACGGACTGGGACACAACTGTGTGTCCCTATTTCAAATTTTACA
325 AAAGAGTTACATGAGCACGGACACGGACTGGGACACAACTGTGTGTCCCTACTTCAAATTTTACA
* *
8752765 TGGCCTGAGGCATGGGCGTGTTTCTCAATCGTGTGACCCCTGCAGCTTAAATTTTTCTAACTTTC
390 TGGCCTGAGACATGGGCCTGTTTCTCAATCGTGTGACCCCTGCAGCTTAAATTTTTCTAACTTTC
* *
8752830 TCCTTAATGTTTTAAATATTCCCGATTTAGTCCCGAATTATTTCTAAAGTGTTTCTAGGGCCTGG
455 TCCTTAATGTTTTAAATATCCCCAATTTAGTCCCGAATTATTTCTAAAGTGTTTCTAGGGCCTGG
* *
8752895 AAGGCTCGATTAAGCGACAATAAGTATGTGTATGTGTGGACTTTGCTATGCCTAATGAAATGTTT
520 AAGGCTCGATTAAGCGACAATAAGCATGTGTATGTGTGGACTTTGCTATGCATAATGAAATGTTT
*
8752960 AGAAATGAATGTTGTGATGTTATGGTTTTACGGTAATGCTCTGTAACCCTATTCCAGTGACAGAT
585 AGAAATGAATGTTGTGATGTTATGGTTTTACGGTAATGCTCCGTAACCCTATTCCAGTGACAGAT
8753025 ACAAGTTAAGGGTGTTACAATTTTACTTAATCAAAATTAATTTTCCCAAAAATTACATAGATTTT
650 ACAAGTTAAGGGTGTTACAATTTTACTTAATCAAAATTAATTTTCCCAAAAATTACATAGATTTT
*
8753090 CAAAATTAATTTTTTAAGAAAA
715 CAAAATTAAATTTTTAAGAAAA
*
8753112 TTATATGGCATATTAGTTTAATGAAATTTGGTCATTTGAATTGGTAATATTATGTATGTTTAGGT
1 TTATATGGCATATTAGTTTAATGAAATTTGGTCATTTGAATTGGTCATATTATGTATGTTTAGGT
* * * *
8753177 ATGTTTTAAGGTCTTAATTATATGTGCAAGTTAATTGTATGCTCAAGCTTGAAAGGGGGAAAGAA
66 ATGTTTTAAGGTCTTAATTATATGTGCAAGTTAATTGTAGGTTCAAGCTTGAATGGGTGAAAGAA
8753242 ATTGCTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGGGGGTGTGTCACAACCGT
131 ATTGCTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGGGGGTGTGTCACAACCGT
* *
8753307 GTGTGACACACAACCATTCGACACGACCGTGTGTCCCCTGTAGGTTTTAAAGGTTGCTTTTCAAA
196 GTGTGACACACAACCATGCGACACGACCGTGTATCCCCTGTAGGTTTTAAAGGTTGCTTTTCAAA
* **
8753372 AGTAACACGACCTGGCACACGTGCGTGCAAGGTCATCTTGAAGGTTGACTGTGTAA-CCAAGTCA
261 AGTAACACGACCTGGCACACGGGCGTGCAAGGTCATCTTGAAGGTTGACCATGTAATCCAAGTCA
* * ** *
8753436 GAGAGTTACATGAGCACGGACACGGGCTGGGACACAGTTGTGTGTCCCTACTTCAAATTTTGCAT
326 AAGAGTTACATGAGCACGGACACGGACTGGGACACAACTGTGTGTCCCTACTTCAAATTTTACAT
*
8753501 GGCCTGAGACATGGGCCTGTTTCTCAGTCGTGTGACCCCTGCAGCTTAAATTTTTCTAACTTTCT
391 GGCCTGAGACATGGGCCTGTTTCTCAATCGTGTGACCCCTGCAGCTTAAATTTTTCTAACTTTCT
*
8753566 CCTTAATGTTTTAAATATCCCCAATTTAGTCCCGAATTATTTCTAAAAT-TGTTCTAGGGCCTGG
456 CCTTAATGTTTTAAATATCCCCAATTTAGTCCCGAATTATTTCTAAAGTGT-TTCTAGGGCCTGG
* *
8753630 AAGGCTCTATTAAGCGACAATAAGCATGTGTATGTGTGGACTTTGCTATGCATATTGAAATGTTT
520 AAGGCTCGATTAAGCGACAATAAGCATGTGTATGTGTGGACTTTGCTATGCATAATGAAATGTTT
8753695 AGAAATGAATGTTGTGATGTTATGGTTTTACGGTAATGCTCCGTAACCCTATTCCAGTGACAGAT
585 AGAAATGAATGTTGTGATGTTATGGTTTTACGGTAATGCTCCGTAACCCTATTCCAGTGACAGAT
*
8753760 ACAGGTTAAGGGTGTTACAATTTTACTTAATCAAAATTAATTTTCCCAAAAATTACATAGATTTT
650 ACAAGTTAAGGGTGTTACAATTTTACTTAATCAAAATTAATTTTCCCAAAAATTACATAGATTTT
*
8753825 CCAAATTAAATTTTTAAGAAAA
715 CAAAATTAAATTTTTAAGAAAA
* *
8753847 TTATATGGCATATTAGTTTAATGGAATTTGGTCATTTAAATTGGTCATATTATGTATGTTTAGGT
1 TTATATGGCATATTAGTTTAATGAAATTTGGTCATTTGAATTGGTCATATTATGTATGTTTAGGT
* * *
8753912 ATGTTTTAAGTTCTTAATTATATGGGCAAGTCAATTGTAGGTTCAAGCTTGAATGGGTGAAAGAA
66 ATGTTTTAAGGTCTTAATTATATGTGCAAGTTAATTGTAGGTTCAAGCTTGAATGGGTGAAAGAA
* *
8753977 A-TGACTTGAATTTTAGCCAATTTCTTGTCCACATGGCCTAAGACACGGGGGTGTGTCACGACCG
131 ATTG-CTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGGGGGTGTGTCACAACCG
8754041 TGTGTGACACACAACCATG
195 TGTGTGACACACAACCATG
8754060 AGACTGTTAA
Statistics
Matches: 894, Mismatches: 51, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
734 3 0.00
735 594 0.66
736 297 0.33
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (736 bp):
TTATATGGCATATTAGTTTAATGAAATTTGGTCATTTGAATTGGTCATATTATGTATGTTTAGGT
ATGTTTTAAGGTCTTAATTATATGTGCAAGTTAATTGTAGGTTCAAGCTTGAATGGGTGAAAGAA
ATTGCTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGGGGGTGTGTCACAACCGT
GTGTGACACACAACCATGCGACACGACCGTGTATCCCCTGTAGGTTTTAAAGGTTGCTTTTCAAA
AGTAACACGACCTGGCACACGGGCGTGCAAGGTCATCTTGAAGGTTGACCATGTAATCCAAGTCA
AAGAGTTACATGAGCACGGACACGGACTGGGACACAACTGTGTGTCCCTACTTCAAATTTTACAT
GGCCTGAGACATGGGCCTGTTTCTCAATCGTGTGACCCCTGCAGCTTAAATTTTTCTAACTTTCT
CCTTAATGTTTTAAATATCCCCAATTTAGTCCCGAATTATTTCTAAAGTGTTTCTAGGGCCTGGA
AGGCTCGATTAAGCGACAATAAGCATGTGTATGTGTGGACTTTGCTATGCATAATGAAATGTTTA
GAAATGAATGTTGTGATGTTATGGTTTTACGGTAATGCTCCGTAACCCTATTCCAGTGACAGATA
CAAGTTAAGGGTGTTACAATTTTACTTAATCAAAATTAATTTTCCCAAAAATTACATAGATTTTC
AAAATTAAATTTTTAAGAAAA
Found at i:8769748 original size:735 final size:735
Alignment explanation
Indices: 8766771--8770843 Score: 5215
Period size: 736 Copynumber: 5.5 Consensus size: 735
8766761 NNNNNNNNNN
8766771 ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
1 ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
8766836 GGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGTG
66 GGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGTG
*
8766901 TCACGACCGTGTGTGACACACAACCATGCGACACGATCGTGTGTCCCCTATACATTTTAAATGTG
131 TCACGACCGTGTGTGACACACAACCATGCGACACGGTCGTGTGTCCCCTATACATTTTAAATGTG
*
8766966 GTATTTCAAAAGTTACACGACTTGGCACACAGGCATGTAAGGTGATTTTGAAGGTTGACCGTGTA
196 GCATTTCAAAAGTTACACGACTTGGCACACAGGCATGTAAGGTGATTTTGAAGGTTGACCGTGTA
* * *
8767031 ACCCAGGTCAGAGAGTTACATGAGTAGGGACACGGGTTGCGACACAGCTGTGTGCCCCTATTTCA
261 ACCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATTTCA
* *
8767096 AATTTTAAATGGCTTGAGAGACGGGCATGTTTCTCAGCCCTGTGACCCCTGCAGCTTAAATTTTT
326 AATTTTAAATGGCTTGAGAGACGGGCATGTTCCTCAGCCGTGTGACCCCTGCAGCTTAAATTTTT
* * *
8767161 GTAACTTTCACCTTAATATTTTAAATATTCTTAATTTAGTCCCGAATTGTTTCTAAAGTGTTTCT
391 GTAACTTTCTCCTTAATGTTTTAAATATTCTTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCT
*
8767226 AGGGCCTGGAAGGCTCGATTAAGGGGCAATAAGCATGTGTATGTGTGGACTTTGCTATGCTTAAT
456 A-GGCCTGGAAGGCTCGATTAAGGGACAATAAGCATGTGTATGTGTGGACTTTGCTATGCTTAAT
8767291 GAAATATTTAGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCG
520 GAAATATTTAGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCG
* * *
8767356 GGGATAGATACAGGTTCGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCAAAAAATTAC
585 GTGATAGATACAGGTTAGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATTAC
*
8767421 TTAGATTTTCGAAAATAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCA
650 TTAGATTTTCGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCA
*
8767486 TTTGAATTGGTCATATTA-TG
715 TTTGAATTGGTCGTATTATTG
* * *
8767506 TATGTTTAGGTATGTTTTAAGGTCTTAATTATATGGGCAAATCAATTGTAGGTTCAAGCTTGAAT
1 -ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAAT
8767571 GGGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGT
65 GGGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGT
*
8767636 GTCACGACCGTGTGTGACACACAACCATGCGACACGATCGTGTGTCCCCTATACATTTTAAATGT
130 GTCACGACCGTGTGTGACACACAACCATGCGACACGGTCGTGTGTCCCCTATACATTTTAAATGT
* * *
8767701 GGTATTTCGAAAGTTACACGACTTGGCACACAGGCATGTAAGGTGATTTTCAAGGTTGACCGTGT
195 GGCATTTCAAAAGTTACACGACTTGGCACACAGGCATGTAAGGTGATTTTGAAGGTTGACCGTGT
*
8767766 AGCCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATTTC
260 AACCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATTTC
* *
8767831 AAATTTTAAATGGCTTGAGAGACGGGCATGTTTCTCAGCCCTGTGACCCCTGCAGCTTAAATTTT
325 AAATTTTAAATGGCTTGAGAGACGGGCATGTTCCTCAGCCGTGTGACCCCTGCAGCTTAAATTTT
*
8767896 TGTAACTTTCTCCTTAATGTTTTAAATATTCTCGATTTAGTCCCGAATTGTTTCTAAAGTGTTTC
390 TGTAACTTTCTCCTTAATGTTTTAAATATTCTTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTC
* * **********************************
8767961 TAGGGCGTAGAAGGCTCGATTAAGGGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
455 TA-GGCCTGGAAGGCTCGATTAAGGGACAA-TAAGCATGTGTATGTGTGGACTTTGCTATGCTTA
*****************************************************************
8768026 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
518 ATGAAATATTTAGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTC
************************************** *
8768091 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCAAAATTAATTTTCCCAAAAATT
583 CGGTGATAGATACAGGTTAGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATT
* *
8768156 ACATAGATTTTCCAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGT
648 ACTTAGATTTTCGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGT
8768221 CATTTGAATTGGTCGTATTATTG
713 CATTTGAATTGGTCGTATTATTG
8768244 ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
1 ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
* *
8768309 GGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGG--TAAGACACG-GGCGTGT
66 GGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGG-GTGT
* * *
8768371 GTCACAACCGTGTGTGACACACAACCATGCGACACGGTCGCGTGTCCCCTAT-CAGTTTTAAAGG
130 GTCACGACCGTGTGTGACACACAACCATGCGACACGGTCGTGTGTCCCCTATACA-TTTTAAATG
** * * * *
8768435 TTTC-TTTCCAAAAGTTACACGAC-TGGCACACGGGCATGTAAGGTTATTTTGAAGGTTCACCAT
194 TGGCATTT-CAAAAGTTACACGACTTGGCACACAGGCATGTAAGGTGATTTTGAAGGTTGACCGT
* * * * * * * * ** * * *
8768498 GCAACCCAAGCCATAGAGTTAAATGAGTACGGACAGGGGCTATGACACTGTTGTGTATCCCTATT
258 GTAACCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATT
* * * * * * * *
8768563 TCTAATTTTACATGGCTTGAGACACGAGCGTGTTTCC-CAG-CGACGTGACCCCTGCACCTTATA
323 TCAAATTTTAAATGGCTTGAGAGACGGGCATG-TTCCTCAGCCG-TGTGACCCCTGCAGCTTAAA
* * * * * * *
8768626 TTTTTCTATCTTTCTCTTTAATGTTTAAAATATTCCTAATTAAGTCCCGAATTGTTTCTAAAGTG
386 TTTTTGTAACTTTCTCCTTAATGTTTTAAATATTCTTGATTTAGTCCCGAATTGTTTCTAAAGTG
* * *
8768691 CTTCTAGGACCTGGAAGGCTCGATTAAGGGGCAATAAGCATGTATATGTGTGGACTTTGCTATGC
451 TTTCTAGG-CCTGGAAGGCTCGATTAAGGGACAATAAGCATGTGTATGTGTGGACTTTGCTATGC
8768756 TTAATGAAATATTTAGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTA
515 TTAATGAAATATTTAGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTA
*
8768821 TTCCGGTGATAGATACATGTTAGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAA
580 TTCCGGTGATAGATACAGGTTAGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAA
8768886 ATTACTTAGATTTTCGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTT
645 ATTACTTAGATTTTCGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTT
8768951 GGTCATTTGAATTGGTCGTATTATTG
710 GGTCATTTGAATTGGTCGTATTATTG
8768977 ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
1 ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
8769042 GGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGTG
66 GGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGTG
* * * *
8769107 TCACGACTGTGGGTGACACACAACCGTGCGACACGGCCGTGTGTCCCCTATACATTTTAAATGTG
131 TCACGACCGTGTGTGACACACAACCATGCGACACGGTCGTGTGTCCCCTATACATTTTAAATGTG
8769172 GCATTTCAAAAGTTACACGACTTGGCACACAGGCATGTAAGGTGATTTTGAAGGTTGACCGTGTA
196 GCATTTCAAAAGTTACACGACTTGGCACACAGGCATGTAAGGTGATTTTGAAGGTTGACCGTGTA
*
8769237 ACCCAGGTCGGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATTTCA
261 ACCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATTTCA
*
8769302 AATTTTACATGGCTTGAGAGACGGGCATGTTCCTCAGCCGTGTGACCCCTGCAGCTTAAATTTTT
326 AATTTTAAATGGCTTGAGAGACGGGCATGTTCCTCAGCCGTGTGACCCCTGCAGCTTAAATTTTT
*
8769367 GTAACTTTCACCTTAATGTTTTAAATATTCTTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCT
391 GTAACTTTCTCCTTAATGTTTTAAATATTCTTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCT
* * * * * *
8769432 AGGCCGTAGAAGGCTCGATTAAGGGACAATAGGTATGTGTACGTGTGGACTATCCTATGCTTAAT
456 AGGCC-TGGAAGGCTCGATTAAGGGACAATAAGCATGTGTATGTGTGGACTTTGCTATGCTTAAT
* * * *
8769497 -AAA-ATTCTCAGAAATGAATGTTGTGATGTTATGGTTTTACGGTAATGCTCCGTAACCCTATTT
520 GAAATATT-T-AGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTC
* * * * * * * *
8769560 CGGTGACAAATATAGGTTAAGGG-GTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATT
583 CGGTGATAGATACAGGTTAGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATT
* * *
8769624 ACATAGATTTTCCAAATTAAATTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGT
648 ACTTAGATTTTCGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGT
8769689 CATTTGAATTGGTCGTATTATTG
713 CATTTGAATTGGTCGTATTATTG
*
8769712 ATGTTTAGGTATGTTTTAAGTTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
1 ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
* *
8769777 GGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGG--TAAGACACG-GGCGTGT
66 GGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGG-GTGT
* * * * *
8769839 GTCACAACCGTGGGTGACACACAACCATGCGACACGGTCGCGTGTCCCCTAT-CGGTTTTAAAGG
130 GTCACGACCGTGTGTGACACACAACCATGCGACACGGTCGTGTGTCCCCTATAC-ATTTTAAATG
** * * *
8769903 TTACTTTTCAAAAGTTACACGAC-TGGCACAC-GGACATGTAAGTTCG-TTTTGAAGGTTCACCG
194 TGGCATTTCAAAAGTTACACGACTTGGCACACAGG-CATGTAAGGT-GATTTTGAAGGTTGACCG
* * * * * ** *
8769965 TGCAACCCAAGTCATAGAGTTATATGAGCACGGACACGGGCTATGACACTGCTGTGTGTCCCTAT
257 TGTAACCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTAT
* * * * * **
8770030 TTCTAATTTTACATGGCTTGAGACACGAGCGTGTTTCC-CAGCCACGTGACCCCTGCAGCTTAAA
322 TTCAAATTTTAAATGGCTTGAGAGACGGGCATG-TTCCTCAGCCGTGTGACCCCTGCAGCTTAAA
* * * * *
8770094 TTTTTCTATCTTTCTCTTTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTG
386 TTTTTGTAACTTTCTCCTTAATGTTTTAAATATTCTTGATTTAGTCCCGAATTGTTTCTAAAGTG
8770159 TTTCTAGGGCCTGGAAGGCTCGATTAATGGG-CAATAAGCATGTGTATGTGTGGACTTTGCTATG
451 TTTCTA-GGCCTGGAAGGCTCGATTAA-GGGACAATAAGCATGTGTATGTGTGGACTTTGCTATG
8770223 CTTAATGAAATATTTAGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCT
514 CTTAATGAAATATTTAGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCT
*
8770288 ATTCCGGTGATAGATACATGTTAGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAA
579 ATTCCGGTGATAGATACAGGTTAGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAA
*
8770353 AATTACTTAGATTTTCGAAATTAATTTTTGAAGAAAATTATATGGCATATTAGTTTAATGGAATT
644 AATTACTTAGATTTTCGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATT
*
8770418 TGGTCATTTGAATTGGTCATATTA-TG
709 TGGTCATTTGAATTGGTCGTATTATTG
* * *
8770444 TATGTTTAGGTATGTTTTAAGGTCTTAATTATTTGGGCAAGTCAATTGTAGGTTCAAGCTTGAAT
1 -ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAAT
8770509 GGGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGT
65 GGGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGT
* *
8770574 GTTCACGACCGT-TGTGATACACAACCATGCGACACGGCCGTGTGTCCCCTATACATTTTAAATG
130 G-TCACGACCGTGTGTGACACACAACCATGCGACACGGTCGTGTGTCCCCTATACATTTTAAATG
8770638 TGGCATTTCAAAAGTTACACGACTTGGC-CAACAGGCATGTAAGGTGATTTTGAAGGTTGACCGT
194 TGGCATTTCAAAAGTTACACGACTTGGCAC-ACAGGCATGTAAGGTGATTTTGAAGGTTGACCGT
*
8770702 GTAACCCAGGTCGGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATT
258 GTAACCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATT
* *
8770767 TCAAATTTTAAATGGCTTGAGAGACGGGCATGTTTCTCAGCCGTGGGACCCCTGCAGCTTAAATT
323 TCAAATTTTAAATGGCTTGAGAGACGGGCATGTTCCTCAGCCGTGTGACCCCTGCAGCTTAAATT
8770832 TTTGTAACTTTC
388 TTTGTAACTTTC
8770844 GTTGTGATAT
Statistics
Matches: 2777, Mismatches: 520, Indels: 80
0.82 0.15 0.02
Matches are distributed among these distances:
731 2 0.00
732 328 0.12
733 550 0.20
734 230 0.08
735 495 0.18
736 954 0.34
737 216 0.08
738 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.32
Consensus pattern (735 bp):
ATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAATG
GGTGAAAGAAATGACTTGAATTTTAGCCAATTTCTTGTCCACACGGCCTAAGACACGTGGGTGTG
TCACGACCGTGTGTGACACACAACCATGCGACACGGTCGTGTGTCCCCTATACATTTTAAATGTG
GCATTTCAAAAGTTACACGACTTGGCACACAGGCATGTAAGGTGATTTTGAAGGTTGACCGTGTA
ACCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCTGTGTGTCCCTATTTCA
AATTTTAAATGGCTTGAGAGACGGGCATGTTCCTCAGCCGTGTGACCCCTGCAGCTTAAATTTTT
GTAACTTTCTCCTTAATGTTTTAAATATTCTTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCT
AGGCCTGGAAGGCTCGATTAAGGGACAATAAGCATGTGTATGTGTGGACTTTGCTATGCTTAATG
AAATATTTAGAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCGG
TGATAGATACAGGTTAGGGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATTACT
TAGATTTTCGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCAT
TTGAATTGGTCGTATTATTG
Found at i:8772562 original size:735 final size:730
Alignment explanation
Indices: 8770843--8772998 Score: 3223
Period size: 733 Copynumber: 2.9 Consensus size: 730
8770833 TTGTAACTTT
*
8770843 CGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCGGTGATAGATACAGGTTCG
1 CGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCGGTGATAGATACAGGTT-A
* *
8770908 GGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCAAAAAATTACTTAGATTTTCGAAAATAA
65 GGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAAATTAA
8770973 TTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCATATTA
130 TTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCATATTA
8771038 TGTATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGA
195 TGTATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGA
8771103 ATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTAAGACACGGGCGTGT
260 ATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTAAGACACGGG-GTGT
*
8771168 GTCACAACCGTGTGTGACACACAACCATGCGACACGGTCGCGTGTCCCCTAT-CAGTTTTAAAGG
324 GTCACAACCGTGTGTGACACACAACCATGCGACACGGCCGCGTGTCCCCTATACA-TTTTAAAGG
*
8771232 TTTCTTTTCAAAAGTTACACGACTGGCACACGGGCATGTAAGGTCG-TTTTGAAGGTTCACCGTG
388 TTTC-TTTCAAAAGTTACACGACTGGCACACGGGCATGTAAGGT-GATTTTGAAGGTTCACAGTG
8771296 CAACCCAAGTCATAGAGTTACATGAGCACGGACACGGGCTATGACACTGCTGTGTGTCCCTATTT
451 CAACCCAAGTCATAGAGTTACATGAGCACGGACACGGGCTATGACACTGCTGTGTGTCCCTATTT
8771361 CTAATTTTACATGGCTTGAGACACGAGCGTGTTTCCCAGCGACGTGACCCCTGCACCTTATATTT
516 CTAATTTTACATGGCTTGAGACACGAGCGTGTTTCCCAGCGACGTGACCCCTGCACCTTATATTT
* *
8771426 TTCTATCTTTCTCTTTAATGTTTTAAATACTACT-GATTTAGTCCCGAATTGTTTCTAAAGT-TT
581 TTCTATCTTTCTCTTTAATGTTTTAAATA-TTCTCAATTTAGTCCCGAATTGTTTCTAAAGTGTT
* * * * *
8771489 TTCTAGGGCCTGGAAGGCTCGATTAAGGGGCAATAAGCATGTGTATGTGTGGACTTTGCTATGCT
645 TT-TAGGGCCTGGAAGGCTCGATTAAGGGACAACAAGCATGTGTACGTGTGGACTATCCTATGCT
*
8771554 TAATGAAATATTTAGAAATGAA
709 TAATGAAATATTCAGAAATGAA
*
8771576 CGTTGTGGTATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCGGTGATAGATACAGGTTAG
1 CGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCGGTGATAGATACAGGTTAG
8771641 GAGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAAATTAA
66 G-GTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAAATTAA
* * *
8771706 ATTTTGAAGAAAATTATATGGCATATTAGTTTAACGGAATTTGGTCATTTGAATTGGTCATATTA
130 TTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCATATTA
* * *
8771771 TGTATGTTTAGGTATGTTTTAAGGTCTTAATTATTTGGGCAAGTCAATTGTAGGTTCAAGCTTGA
195 TGTATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGA
* * *
8771836 ATGGGTGAAAGAAATGACTTGAATTTTAGCCAATTTATTGTCCACACGGCCTAAGACACGTGGGT
260 ATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGG--TAAGACACG-GGGT
* * * * *
8771901 GTGTCACGACCGTGTGTGACACACAACCGTGCGACACGGCCGTGTGTCCCCTATACATTTGAAAT
322 GTGTCACAACCGTGTGTGACACACAACCATGCGACACGGCCGCGTGTCCCCTATACATTTTAAAG
** * * *
8771966 GTGGCATTTCAAAAGTTACACGACTTAGCACACAGGCATGTAAGGTGATTTTGAAGGTTGACAGT
387 GTTTC-TTTCAAAAGTTACACGAC-TGGCACACGGGCATGTAAGGTGATTTTGAAGGTTCACAGT
** * * * * ** * *
8772031 GTTACCCAGGTCAAAGAGTTACATGACCAAGGACACGGGCTGCGACACAGCTATGTGTCCCTATT
450 GCAACCCAAGTCATAGAGTTACATGAGCACGGACACGGGCTATGACACTGCTGTGTGTCCCTATT
* * * * * * * * *
8772096 TCAAATTTTACATGGCCTGAGAGACGGGCATGTTTCTCAGCCG-TGTGACCCCTGCAGCTTAAAT
515 TCTAATTTTACATGGCTTGAGACACGAGCGTGTTTCCCAG-CGACGTGACCCCTGCACCTTATAT
* * *
8772160 TTTTGTAACTTTCTCCTTAATGTTTTAAATATTCTCAATTTAGTCCCGAATTGTTTCTAAAGTGT
579 TTTTCTATCTTTCTCTTTAATGTTTTAAATATTCTCAATTTAGTCCCGAATTGTTTCTAAAGTGT
* * *
8772225 TTTTAGGGCGTAGAAGGCTCGATTAAGGGACAACAAGTATGTGTACGTGTGGACTATCCTATGCT
644 TTTTAGGGCCTGGAAGGCTCGATTAAGGGACAACAAGCATGTGTACGTGTGGACTATCCTATGCT
8772290 TAATGAAAT-TCTCAGAAATGAA
709 TAATGAAATAT-TCAGAAATGAA
* * * * * * * * * *
8772312 TGTTGTGATGTTTTGGATTTACGGTAATGCTCCGTAACCCTATTTCGGTTAGAAATATAGGTTAA
1 CGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCGGTGATAGATACAGGTT-A
* * * * * *
8772377 GGG-GTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACATAGATTTTCCAAATTAA
65 GGGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAAATTAA
8772441 TTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCATATTA
130 TTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCATATTA
*
8772506 TGTATGTTTAGGTATGTTTTAAGGTCTTAATTATATACGCAAGTTAATTGTAGGTTCAAGCTTGA
195 TGTATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGA
*
8772571 ATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTTAAGACACGGCGTGT
260 ATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGG-TAAGACACGGGGTGT
* * **
8772636 GTCACAATCGTGTGTGACACACAACCATGCGACACGGCCGCATGTCCCCTATAGGTTTTAAAGGT
324 GTCACAACCGTGTGTGACACACAACCATGCGACACGGCCGCGTGTCCCCTATACATTTTAAAGGT
*
8772701 TTCTTTCCAAAAGTTACACGACTGGCACACGGGCATGTAAGGTTATTTTGAAGGTTCACCA-TGC
389 TTCTTT-CAAAAGTTACACGACTGGCACACGGGCATGTAAGGTGATTTTGAAGGTTCA-CAGTGC
* * * * * *
8772765 AACCCAAGCCATAGAGTTAAATGAGTACGGACAGGGGCTATGACACTGTTGTGTATCCCTATTTC
452 AACCCAAGTCATAGAGTTACATGAGCACGGACACGGGCTATGACACTGCTGTGTGTCCCTATTTC
8772830 TAATTTTACATGGCTTGAGACACGAGCGTGTTTCCCAGCGACGTGACCCCTGCACCTTATATTTT
517 TAATTTTACATGGCTTGAGACACGAGCGTGTTTCCCAGCGACGTGACCCCTGCACCTTATATTTT
* * *
8772895 TCTATCTTTCTCTTTAATGTTTAAAATATTC-CTAATTAAGTCCCGAATTGTTTCTAAAGTGCTT
582 TCTATCTTTCTCTTTAATGTTTTAAATATTCTC-AATTTAGTCCCGAATTGTTTCTAAAGTGTTT
* * * *
8772959 CTAGGACCTGGAAGGCTCGATTAAGGGGCAATAAGCATGT
646 TTAGGGCCTGGAAGGCTCGATTAAGGGACAACAAGCATGT
8772999 ATATGTGNNN
Statistics
Matches: 1266, Mismatches: 141, Indels: 33
0.88 0.10 0.02
Matches are distributed among these distances:
731 3 0.00
732 231 0.18
733 372 0.29
734 9 0.01
735 317 0.25
736 325 0.26
737 9 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (730 bp):
CGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCCTATTCCGGTGATAGATACAGGTTAG
GGTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAAATTAAT
TTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCATATTAT
GTATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAGCTTGAA
TGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTAAGACACGGGGTGTGT
CACAACCGTGTGTGACACACAACCATGCGACACGGCCGCGTGTCCCCTATACATTTTAAAGGTTT
CTTTCAAAAGTTACACGACTGGCACACGGGCATGTAAGGTGATTTTGAAGGTTCACAGTGCAACC
CAAGTCATAGAGTTACATGAGCACGGACACGGGCTATGACACTGCTGTGTGTCCCTATTTCTAAT
TTTACATGGCTTGAGACACGAGCGTGTTTCCCAGCGACGTGACCCCTGCACCTTATATTTTTCTA
TCTTTCTCTTTAATGTTTTAAATATTCTCAATTTAGTCCCGAATTGTTTCTAAAGTGTTTTTAGG
GCCTGGAAGGCTCGATTAAGGGACAACAAGCATGTGTACGTGTGGACTATCCTATGCTTAATGAA
ATATTCAGAAATGAA
Found at i:8786360 original size:387 final size:387
Alignment explanation
Indices: 8785646--8786419 Score: 1512
Period size: 387 Copynumber: 2.0 Consensus size: 387
8785636 TCTCTTTCTC
8785646 TTTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAA
1 TTTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAA
8785711 GGCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAATAAAATTCTCAG
66 GGCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAATAAAATTCTCAG
8785776 AAATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATAT
131 AAATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATAT
8785841 AGGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACATAGATTTTCCA
196 AGGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACATAGATTTTCCA
8785906 AATTAAATTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTC
261 AATTAAATTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTC
*
8785971 GTATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATGTGCAAGTTAATTGTAGGTT
326 GTATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTT
8786033 TTTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAA
1 TTTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAA
8786098 GGCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAATAAAATTCTCAG
66 GGCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAATAAAATTCTCAG
8786163 AAATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATAT
131 AAATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATAT
* *
8786228 AGGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGA
196 AGGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACATAGATTTTCCA
*
8786293 AATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTC
261 AATTAAATTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTC
8786358 GTATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTT
326 GTATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTT
8786420 CAAGCTTGAA
Statistics
Matches: 383, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
387 383 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (387 bp):
TTTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAA
GGCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAATAAAATTCTCAG
AAATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATAT
AGGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACATAGATTTTCCA
AATTAAATTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTC
GTATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTT
Found at i:8787684 original size:736 final size:730
Alignment explanation
Indices: 8786034--8787987 Score: 2972
Period size: 736 Copynumber: 2.7 Consensus size: 730
8786024 TTGTAGGTTT
8786034 TTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAAG
1 TTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAAG
8786099 GCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAATAAAATTCTCAGA
66 GCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAAT-AAATTCTCAGA
8786164 AATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATATA
130 AATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATATA
8786229 GGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAA
195 GGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAA
8786294 ATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCG
260 ATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCG
*
8786359 TATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATGCGCAAGTTAATTGTAGGTTCAAG
325 TATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATG-GCAAGTCAATTGTAGGTTCAAG
8786424 CTTGAATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTAAGACACGGG
389 CTTGAATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTAAGACACGGG
* *
8786489 CGTGTGTCACAACCGTGTGTGACACACAACCATGCGACACGGTCGCGTGTCCCCTATCGGTTTTA
454 CGTGTGTCACAACCGTGTGTGACACACAACCATGCGACACGGCCGCGTGTCCCCTATCGATTTTA
** * *
8786554 AAGGTTTCTTTTCAAAAGTTACACGACTGGCACACGGGCATGTAAGGTCGTTTTGAAGGTTCACC
519 AAGGTGGCATTTCAAAAGTTACACGACTGGCACACAGGCATGTAAGGTCGTTTTGAAGGTTCACC
* * * *
8786619 GTGCAACCCAAGTCATAGAGTTACATGAGCACGGACACGGGCTATGACACTGCTGTGTGTCCCTA
584 GTGCAACCCAAGTCAGAGAGTTACATGAGCACGGACACGGGCTACGACACAGCTATGTGTCCCTA
* *
8786684 TTTCTAATTTTACATGGCTTGAGACACGAACGTGTTTCCCAGCCACGTGACCCCTGCAGCTTAAA
649 TTTCAAATTTTACATGGCTTGAGACACGAACATGTTTCCCAGCCACGTGACCCCTGCAGCTTAAA
** * *
8786749 TTTTTCTCTCTTTCTCT
714 TTTTTCTAACTTTCACC
* *
8786766 TTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCCTGGAAG
1 TTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAAG
* * * * * *
8786831 GCTCGATTAATGGG-CAATAAGCATGTATATGTGTGGACTTTGCTATGCTTAATGAAATAT-TTA
66 GCTCGATTAA-GGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAAT-AAAT-TCTCA
* * * * * * *
8786894 GAAATGAACGTTGTGATATTATGGTTTTACGGTAATGCTCCATAACCATATTTCGGTGATAGATA
128 GAAATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATA
* * * * * *
8786959 CATGTT-AGGGTTGTTAGAATTTTACGTAATCAAAATTAATTTTCCCAAAAATTACTTAGATTTT
193 TAGGTTAAGGG--GTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACTTAGATTTT
8787023 CGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTG
256 CGAAATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTG
* *
8787088 GTCATATTA-TGTATGTTTAGGTATGTTTTAAGGTCCTAATTATATGGGCAAGTCAATTGTAGGT
321 GTCGTATTATTG-ATGTTTAGGTATGTTTTAAGGTCTTAATTATAT-GGCAAGTCAATTGTAGGT
* * *
8787152 TCAAGCTTGAATGGGTGAAAGAAATGACTTGAATTTTTGCCAATTTCTTGTCCACACGGCCTAAG
384 TCAAGCTTGAATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGG--TAAG
* * * * *
8787217 ACACGTGG-GTGTGTCACGATCATGTGTGATACACAACCATGCGACACGGCCGTGTGTCCCCTAT
447 ACACG-GGCGTGTGTCACAACCGTGTGTGACACACAACCATGCGACACGGCCGCGTGTCCCCTAT
* * *
8787281 AC-ATTTTAAATGTGGCATTTCAAAAGTTACATGACTTGGCACACATGCATGTAAGGT-GATTTT
511 -CGATTTTAAAGGTGGCATTTCAAAAGTTACACGAC-TGGCACACAGGCATGTAAGGTCG-TTTT
* * * * *
8787344 GAAGGTTGACCGTGTAACCCAGGTCAGAGAGTTACATGAGCAGGGACACGGGCTGCGACACAGCT
573 GAAGGTTCACCGTGCAACCCAAGTCAGAGAGTTACATGAGCACGGACACGGGCTACGACACAGCT
* * **
8787409 ATGTGTCCCTATTTCAAATTTTACATGGCTTGAGAGACGAGCATG-TTCCTCAGCCGTGTGACCC
638 ATGTGTCCCTATTTCAAATTTTACATGGCTTGAGACACGAACATGTTTCC-CAGCCACGTGACCC
*
8787473 CTGCAGCTTAAATTTTTGTAACTTTCACC
702 CTGCAGCTTAAATTTTTCTAACTTTCACC
* *
8787502 TTAATGTTTTAAATATTCTTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAAG
1 TTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAAG
* *
8787567 GCTCGATTAAGGGACAATAAGTATGTGTACGCGTGGACTATCCTATGCCTAATAAAGTTCTCAGA
66 GCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAATAAA-TTCTCAGA
*
8787632 AATGAATGTTGTGATGTTATGGTTTTATGGTACTGCTCCGTAACCCTATTTCGGTGACAAATATA
130 AATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATATA
* *
8787697 GGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACATAGATTTTCCAA
195 GGTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAA
* * *
8787762 ATTAAATTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTAGTCATTTGAATTAGTCG
260 ATTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCG
* *
8787827 TATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATAT-GC--G-CAAGT-TA-ATT----C
325 TATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATGGCAAGTCAATTGTAGGTTCAAGC
8787882 TTGAATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTAAGACACGGGC
390 TTGAATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTAAGACACGGGC
8787947 GTGTGTCACAACCGTGTGTGACACACAACCATGCGACACGG
455 GTGTGTCACAACCGTGTGTGACACACAACCATGCGACACGG
8787988 NNNNNNNNNN
Statistics
Matches: 1099, Mismatches: 104, Indels: 48
0.88 0.08 0.04
Matches are distributed among these distances:
721 2 0.00
722 46 0.04
724 51 0.05
728 2 0.00
729 2 0.00
730 4 0.00
731 5 0.00
732 177 0.16
733 231 0.21
734 1 0.00
735 246 0.22
736 328 0.30
737 4 0.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (730 bp):
TTAATGTTTTAAATACTCCTGATTTAGTCCCGAATTGTTTCTAAAGTGTTTCTAGGGCGTAGAAG
GCTCGATTAAGGGACAATAAGTATGTGTACGTGTGGACTATCCTATGCTTAATAAATTCTCAGAA
ATGAATGTTGTGATGTTATGGTTTTACGGTACTGCTCCGTAACCCTATTTCGGTGACAAATATAG
GTTAAGGGGTTACAATTTTTCTTCATCAAAATTAATTTTCCCAAAAATTACTTAGATTTTCGAAA
TTAATTTTTTAAGAAAATTATATGGCATATTAGTTTAATGGAATTTGGTCATTTGAATTGGTCGT
ATTATTGATGTTTAGGTATGTTTTAAGGTCTTAATTATATGGCAAGTCAATTGTAGGTTCAAGCT
TGAATGGGTGAAAGAAATGGCTTGAATTTTAGCCAATTTCTTGTGCACACGGTAAGACACGGGCG
TGTGTCACAACCGTGTGTGACACACAACCATGCGACACGGCCGCGTGTCCCCTATCGATTTTAAA
GGTGGCATTTCAAAAGTTACACGACTGGCACACAGGCATGTAAGGTCGTTTTGAAGGTTCACCGT
GCAACCCAAGTCAGAGAGTTACATGAGCACGGACACGGGCTACGACACAGCTATGTGTCCCTATT
TCAAATTTTACATGGCTTGAGACACGAACATGTTTCCCAGCCACGTGACCCCTGCAGCTTAAATT
TTTCTAACTTTCACC
Found at i:8792638 original size:29 final size:29
Alignment explanation
Indices: 8792605--8792660 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
8792595 CTATCAAACT
*
8792605 ATGAAAAATGACGGTGACGACCATCAACA
1 ATGAAAAAGGACGGTGACGACCATCAACA
* *
8792634 ATGAAAAGGGATGGTGACGACCATCAA
1 ATGAAAAAGGACGGTGACGACCATCAA
8792661 AATTATGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.43, C:0.18, G:0.25, T:0.14
Consensus pattern (29 bp):
ATGAAAAAGGACGGTGACGACCATCAACA
Found at i:8792672 original size:31 final size:29
Alignment explanation
Indices: 8792617--8792676 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
8792607 GAAAAATGAC
*
8792617 GGTGACGACCATCAACAATGAAAAGGGAT
1 GGTGACGACCATCAAAAATGAAAAGGGAT
8792646 GGTGACGACCATCAAAATTATGAAAAGGGAT
1 GGTGACGACCATCAAAA--ATGAAAAGGGAT
8792677 CGCTTTGGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 16 0.57
31 12 0.43
ACGTcount: A:0.42, C:0.15, G:0.27, T:0.17
Consensus pattern (29 bp):
GGTGACGACCATCAAAAATGAAAAGGGAT
Found at i:8796505 original size:48 final size:48
Alignment explanation
Indices: 8796446--8796642 Score: 218
Period size: 48 Copynumber: 4.1 Consensus size: 48
8796436 AAGAGATTTC
* * * *
8796446 TCGGTGGCCTGCACACAGTCCGTACCACCTTTGTCTAATAACAGATTC
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTCTCATAACAGATTA
* * * * *
8796494 TCGGTGACCTGCACATAGTCCGTGCCACCCTTGTATCTTAACA-AGTAA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTCTCATAACAGA-TTA
* * * *
8796542 TTGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCACAACAGAATA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTCTCATAACAGATTA
* * *
8796590 TCAGTGGCCTCCACACAGTCTGTGCCACCCTTGTGC-CATAACAGATTA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGT-CTCATAACAGATTA
8796638 TCGGT
1 TCGGT
8796643 ATGCATAGTA
Statistics
Matches: 121, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
48 119 0.98
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (48 bp):
TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTCTCATAACAGATTA
Found at i:8796615 original size:96 final size:96
Alignment explanation
Indices: 8796448--8796623 Score: 244
Period size: 96 Copynumber: 1.8 Consensus size: 96
8796438 GAGATTTCTC
* * * * * * *
8796448 GGTGGCCTGCACACAGTCCGTACCACCTTTGTCTAATAACAGATTCTCGGTGACCTGCACATAGT
1 GGTGGCCTGCACACAGTCCGTACCACCCTTGTCTAACAACAGAATATCAGTGACCTCCACACAGT
8796513 CCGTGCCACCCTTGTATCTTAACAAGTAATT
66 CCGTGCCACCCTTGTATCTTAACAAGTAATT
* * * *
8796544 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCACAACAGAATATCAGTGGCCTCCACACAGT
1 GGTGGCCTGCACACAGTCCGTACCACCCTTGTCTAACAACAGAATATCAGTGACCTCCACACAGT
*
8796609 CTGTGCCACCCTTGT
66 CCGTGCCACCCTTGT
8796624 GCCATAACAG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 68 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (96 bp):
GGTGGCCTGCACACAGTCCGTACCACCCTTGTCTAACAACAGAATATCAGTGACCTCCACACAGT
CCGTGCCACCCTTGTATCTTAACAAGTAATT
Found at i:8804143 original size:48 final size:48
Alignment explanation
Indices: 8804053--8804249 Score: 198
Period size: 48 Copynumber: 4.1 Consensus size: 48
8804043 AAGAGATTTC
* * * ** * *
8804053 TCGGTGGCCTGCACACAGCCCGTACCACCTTTGCCTAATAACAGATTC
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
* * * * *
8804101 TCGGTGGCCTGTACATAGTCCGTGCCACCCTTGTATCTTAACA-AGTAA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGA-TTA
** * * * *
8804149 TTAGTGGCCTACACACAGTCCGTGCCACCCTTGTGTCACAATAGAATA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
* *
8804197 TCGGTGGCCTGCACACATTCCGTGCCACCCTTGTGTTATAACAGATTA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
8804245 TCGGT
1 TCGGT
8804250 ACGCATAGTA
Statistics
Matches: 117, Mismatches: 30, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
47 1 0.01
48 115 0.98
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
Found at i:8809322 original size:9 final size:9
Alignment explanation
Indices: 8809308--8809332 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8809298 TCTGGACCTT
8809308 TCGAAGTTG
1 TCGAAGTTG
8809317 TCGAAGTTG
1 TCGAAGTTG
8809326 TCGAAGT
1 TCGAAGT
8809333 ATTTCCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (9 bp):
TCGAAGTTG
Found at i:8811771 original size:17 final size:17
Alignment explanation
Indices: 8811749--8811781 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8811739 GTTAGTGAAC
*
8811749 ATTGTCGTTGCATTTTT
1 ATTGTCATTGCATTTTT
8811766 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
8811782 AGTGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:8815839 original size:20 final size:20
Alignment explanation
Indices: 8815814--8815855 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8815804 GCGACTGACG
*
8815814 TTGTCTGATGATGGTTCGAT
1 TTGTCTGATGATGGTTCAAT
8815834 TTGTCTGATGATGGTTCAAT
1 TTGTCTGATGATGGTTCAAT
8815854 TT
1 TT
8815856 TAGCTGAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.10, G:0.26, T:0.48
Consensus pattern (20 bp):
TTGTCTGATGATGGTTCAAT
Found at i:8826794 original size:29 final size:29
Alignment explanation
Indices: 8826750--8826824 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
8826740 TCGTATGTCA
* *
8826750 CACACGGCCTATCACA-TGGCTGTGTGTTG
1 CACACGGCCTACCACACTGGC-ATGTGTTG
* *
8826779 CACACGGCGTACCACACTGTCATGTGTTG
1 CACACGGCCTACCACACTGGCATGTGTTG
8826808 CACACGGCCTACCACAC
1 CACACGGCCTACCACAC
8826825 GACCTTCTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 37 0.93
30 3 0.08
ACGTcount: A:0.21, C:0.35, G:0.23, T:0.21
Consensus pattern (29 bp):
CACACGGCCTACCACACTGGCATGTGTTG
Found at i:8828785 original size:59 final size:60
Alignment explanation
Indices: 8828708--8828831 Score: 169
Period size: 59 Copynumber: 2.1 Consensus size: 60
8828698 AACAAGCTGG
* * * * * *
8828708 TGACTAAAAAAGATAAAATTAAATAGTTGGGTGATCGTTTTGTAACTTTTCATAGTTGAA
1 TGACCAAAAAAGACAAAATTAAATAGTAGAGTAATCATTTTGTAACTTTTCATAGTTGAA
* *
8828768 TGACCAAAAAA-ACAAAATTGAATAGTAGAGTAATCATTTTGTAACTTTTCATAGTTGGA
1 TGACCAAAAAAGACAAAATTAAATAGTAGAGTAATCATTTTGTAACTTTTCATAGTTGAA
8828827 TGACC
1 TGACC
8828832 TCTACCTAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 46 0.82
60 10 0.18
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.34
Consensus pattern (60 bp):
TGACCAAAAAAGACAAAATTAAATAGTAGAGTAATCATTTTGTAACTTTTCATAGTTGAA
Found at i:8831486 original size:15 final size:15
Alignment explanation
Indices: 8831434--8831489 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
8831424 ATATACTAAA
8831434 TTAATTTTTTCAATAC
1 TTAA-TTTTTCAATAC
* * * *
8831450 TAAAATATT-AATAT
1 TTAATTTTTCAATAC
8831464 TTAATTTTTCAATAC
1 TTAATTTTTCAATAC
*
8831479 TTATTTTTTCA
1 TTAATTTTTCA
8831490 TTTTATCAAC
Statistics
Matches: 30, Mismatches: 9, Indels: 3
0.71 0.21 0.07
Matches are distributed among these distances:
14 10 0.33
15 17 0.57
16 3 0.10
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (15 bp):
TTAATTTTTCAATAC
Found at i:8837340 original size:185 final size:186
Alignment explanation
Indices: 8837028--8837398 Score: 735
Period size: 185 Copynumber: 2.0 Consensus size: 186
8837018 ACTATCCCTG
8837028 CCAAACCTTAGTTTCTCCCTTTCTTCTCTCCTCCAACTTCAGCCTCCTTTGTCACCGACTCTTCG
1 CCAAACCTTAGTTTCTCCCTTTCTTCTCTCCTCCAACTTCAGCCTCCTTTGTCACCGACTCTTCG
8837093 CCAATCTTGTATAGGATGAATCAACCATCTTCGCTACCAAGCCATCTGTGTATCAACGCTATTAA
66 CCAATCTTGTATAGGATGAATCAACCATCTTCGCTACCAAGCCATCTGTGTATCAACGCTATTAA
8837158 TTATTTTCTATAATTAGGCTAGAGAAAATGCTAATATCAATTTTA-TATCATATAT
131 TTATTTTCTATAATTAGGCTAGAGAAAATGCTAATATCAATTTTATTATCATATAT
8837213 CCAAACCTTAGTTTCTCCCTTTCTTCTCTCCTCCAACTTCAGCCTCCTTTGTCACCGACTCTTCG
1 CCAAACCTTAGTTTCTCCCTTTCTTCTCTCCTCCAACTTCAGCCTCCTTTGTCACCGACTCTTCG
8837278 CCAATCTTGTATAGGATGAATCAACCATCTTCGCTACCAAGCCATCTGTGTATCAACGCTATTAA
66 CCAATCTTGTATAGGATGAATCAACCATCTTCGCTACCAAGCCATCTGTGTATCAACGCTATTAA
8837343 TTATTTTCTATAATTAGGCTAGAGAAAATGCTAATATCAATTTTATTATCATATAT
131 TTATTTTCTATAATTAGGCTAGAGAAAATGCTAATATCAATTTTATTATCATATAT
8837399 TATAAATTAA
Statistics
Matches: 185, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
185 175 0.95
186 10 0.05
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.36
Consensus pattern (186 bp):
CCAAACCTTAGTTTCTCCCTTTCTTCTCTCCTCCAACTTCAGCCTCCTTTGTCACCGACTCTTCG
CCAATCTTGTATAGGATGAATCAACCATCTTCGCTACCAAGCCATCTGTGTATCAACGCTATTAA
TTATTTTCTATAATTAGGCTAGAGAAAATGCTAATATCAATTTTATTATCATATAT
Found at i:8837791 original size:21 final size:23
Alignment explanation
Indices: 8837761--8837811 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
8837751 CCTAATTTTA
8837761 ATATTTTTT-TAATGTGGTACTT
1 ATATTTTTTCTAATGTGGTACTT
*
8837783 GTATTTTTTCTAATGTGGTACTT
1 ATATTTTTTCTAATGTGGTACTT
8837806 ATATTT
1 ATATTT
8837812 AGCAAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.22, C:0.06, G:0.14, T:0.59
Consensus pattern (23 bp):
ATATTTTTTCTAATGTGGTACTT
Found at i:8846690 original size:27 final size:27
Alignment explanation
Indices: 8846649--8846705 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
8846639 TTAAGCAACA
* *
8846649 CCTTTGTGGCGAAATAAGAAA-GAGTAG
1 CCTTTGTGACAAAATAAGAAATGA-TAG
*
8846676 CCTTTGTGACAAAATATGAAATGATAG
1 CCTTTGTGACAAAATAAGAAATGATAG
8846703 CCT
1 CCT
8846706 CTATGGTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (27 bp):
CCTTTGTGACAAAATAAGAAATGATAG
Found at i:8858511 original size:50 final size:50
Alignment explanation
Indices: 8858457--8858697 Score: 295
Period size: 50 Copynumber: 4.7 Consensus size: 50
8858447 AGGTATCCAT
* * *
8858457 GCCATGTCCCAGACATGGTCTTACGA-GGGACCTCACATCTTGGGGCCAAC
1 GCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGGTGCCAAC
8858507 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * *
8858557 GCCATGTCCCAGACATGGTCTTACATGGGACATTTCATCTCGATGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * * * *
8858607 GCCATCTCCCAGACGTGGTCTTACATGGGATCTCTCATAATCTCAATGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-C-CTC-TCATCTC---GGTGCCAAC
* *
8858663 GTCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8858698 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
49 1 0.01
50 120 0.71
51 1 0.01
52 1 0.01
53 7 0.04
54 3 0.02
56 35 0.21
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
Found at i:8858527 original size:100 final size:100
Alignment explanation
Indices: 8858402--8858692 Score: 271
Period size: 100 Copynumber: 2.9 Consensus size: 100
8858392 TCTTGTACTA
* * ** * *
8858402 CCAATGCCATATCCCAGATATGGTCTTACATGAAAGTTCTCATATAGGTATCC-ATGCCATGTCC
1 CCAACGCCATATCCCAGACATGGTCTTACATGAAACCTCTCATATAGGT-GCCAACGCCATGTCC
* * *
8858466 CAGACATGGTCTTACGA-GGGACCTCACATCTTGGGG
65 CAGACATGGTCTTAC-ATGGGACATCACATCTCGAGG
* ** * *
8858502 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCC
1 CCAACGCCATATCCCAGACATGGTCTTACATGAAACCTCTCATATAGGTGCCAACGCCATGTCCC
** *
8858567 AGACATGGTCTTACATGGGACATTTCATCTCGATG
66 AGACATGGTCTTACATGGGACATCACATCTCGAGG
* * ** * * * *
8858602 CCAACGCCATCTCCCAGACGTGGTCTTACATGGGATCTCTCATAATCTCAATGATGCCAATGTCA
1 CCAACGCCATATCCCAGACATGGTCTTACATGAAACCTCTCAT-A--T--A-GGTGCCAACGCCA
8858667 TGTCCCAGACATGGTCTTACATGGGA
60 TGTCCCAGACATGGTCTTACATGGGA
8858693 TCTCTTTACC
Statistics
Matches: 158, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
99 3 0.02
100 118 0.75
103 1 0.01
106 36 0.23
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (100 bp):
CCAACGCCATATCCCAGACATGGTCTTACATGAAACCTCTCATATAGGTGCCAACGCCATGTCCC
AGACATGGTCTTACATGGGACATCACATCTCGAGG
Done.