Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 28 of 136
Found at i:8868150 original size:40 final size:38
Alignment explanation
Indices: 8868106--8868233 Score: 123
Period size: 40 Copynumber: 3.2 Consensus size: 38
8868096 AGCGGCATTT
*
8868106 TTAGCGGTGTTTTGACAAAAACGCCACTAAAAATAGAGCA
1 TTAGCGGTGCTTT-ACAAAAACGCCACTAAAAAT-GAGCA
* * * *
8868146 TTAGCGGCGCTTTACATAAAACACCGCTAAAGATCGAGCA
1 TTAGCGGTGCTTTACA-AAAACGCCACTAAAAAT-GAGCA
** *
8868186 TTAGCGGTGCTTT-CAGGAAAGTGCCATTAAAAATGAGCA
1 TTAGCGGTGCTTTACA--AAAACGCCACTAAAAATGAGCA
8868225 TTAGCGGTG
1 TTAGCGGTG
8868234 TTTTTTGGAA
Statistics
Matches: 72, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
39 19 0.26
40 53 0.74
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (38 bp):
TTAGCGGTGCTTTACAAAAACGCCACTAAAAATGAGCA
Found at i:8868353 original size:41 final size:41
Alignment explanation
Indices: 8868308--8868448 Score: 176
Period size: 41 Copynumber: 3.4 Consensus size: 41
8868298 TTTGACAGCA
* * * *
8868308 TTTTTGAAAAAGCGTCGCTAATGCTCAGAGCTTTAGCTGCG
1 TTTTTGAAAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCG
* *
8868349 TTTTT-AAAAATGCACCGCTAATGCTCAGGGATTTAGCGGCA
1 TTTTTGAAAAA-GCGCCGCTAATGCTCAGGGATTTAGCGGCG
** * *
8868390 TTTTCCAAGAAGCGCCGCTAATGCTCGGGGATTTAGCGGCG
1 TTTTTGAAAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCG
8868431 TTTTTGAAAAAGCGCCGC
1 TTTTTGAAAAAGCGCCGC
8868449 AAAAACATTT
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 5 0.06
41 75 0.89
42 4 0.05
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (41 bp):
TTTTTGAAAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCG
Found at i:8868483 original size:20 final size:19
Alignment explanation
Indices: 8868455--8868496 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
8868445 CCGCAAAAAC
*
8868455 ATTTTATTTGTCTATTTACT
1 ATTTAATTTGTCTATTTA-T
*
8868475 ATTTAATTTGTTTATTTAT
1 ATTTAATTTGTCTATTTAT
8868494 ATT
1 ATT
8868497 AGTTAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (19 bp):
ATTTAATTTGTCTATTTAT
Found at i:8871140 original size:24 final size:24
Alignment explanation
Indices: 8871098--8871157 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
8871088 AGAGACTACT
*
8871098 GTTATCTA-GTCTAAGTTGTTTAA
1 GTTATCTATTTCTAAGTTGTTTAA
* *
8871121 TTTATCTATTTCTAATTTGTTTAA
1 GTTATCTATTTCTAAGTTGTTTAA
8871145 GTTATCTATTTCT
1 GTTATCTATTTCT
8871158 GCCTTCAACG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 7 0.22
24 25 0.78
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57
Consensus pattern (24 bp):
GTTATCTATTTCTAAGTTGTTTAA
Found at i:8873387 original size:43 final size:41
Alignment explanation
Indices: 8873330--8873580 Score: 216
Period size: 43 Copynumber: 5.8 Consensus size: 41
8873320 AAAGATTAGT
* * *
8873330 TCTTTAGCGACGTTTGTGGG-GTATGCATCGCTAAAGTTCATGT
1 TCTTTAGCGGCGTTTGTGGGAG-ATGC--CGCTAAAGGTCATGG
*
8873373 TCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGGG-AGA-TGCCGCTAAAGGTCATGG
*
8873416 TCTTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGGGAG-A-TGCCGCTAAAGGTCATGG
* * * * *
8873459 TCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTCAAGGTCTTGG
1 TCTTTAGCGGCGTTTGTGG-GAGA-TGCCGCTAAAGGTCATGG
* * * * * *
8873502 TCTTTAACGGCGTTTGTGGGAAAAGCGCTACTAAAGGTCTTAG
1 TCTTTAGCGGCGTTTGTGGGAGATGC-C-GCTAAAGGTCATGG
* *
8873545 TCTTTAGCGGCGTTTTTGGGAAGAGCGCCGCTAAAG
1 TCTTTAGCGGCGTTTGTGGG-AGA-TGCCGCTAAAG
8873581 AGTCTTTAGC
Statistics
Matches: 178, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.01
42 5 0.03
43 161 0.90
44 5 0.03
45 5 0.03
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.29
Consensus pattern (41 bp):
TCTTTAGCGGCGTTTGTGGGAGATGCCGCTAAAGGTCATGG
Found at i:8873448 original size:86 final size:85
Alignment explanation
Indices: 8873296--8873580 Score: 331
Period size: 86 Copynumber: 3.3 Consensus size: 85
8873286 AATTTTAAGT
** * * * * * **
8873296 GGCGTTTGTGATAAAAGCGCCGCTAAAGATTA-GTTCTTTAGCGACGTTTGTGGG-GTATGCATC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAG-AAGCGCC
*
8873359 GCTAAAGTTCATGTTCTTTAGC
65 GCTAAAGGTCATG-TCTTTAGC
*
8873381 GGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAGAAGCGCCG
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAGAAGCGCCG
8873446 CTAAAGGTCATGGTCTTTAGC
66 CTAAAGGTCAT-GTCTTTAGC
* * * * * **
8873467 GGCGTTTGTGGAAAAAGCGCCGCTCAAGGTCTTGGTCTTTAACGGCGTTTGTGGGAAAAGCGCTA
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAGAAGCGCCG
*
8873532 CTAAAGGTCTTAGTCTTTAGC
66 CTAAAGGTCAT-GTCTTTAGC
* *
8873553 GGCGTTTTTGGGAAGAGCGCCGCTAAAG
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAG
8873581 AGTCTTTAGC
Statistics
Matches: 172, Mismatches: 25, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
85 27 0.16
86 143 0.83
87 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (85 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAGAAGCGCCG
CTAAAGGTCATGTCTTTAGC
Found at i:8874063 original size:50 final size:50
Alignment explanation
Indices: 8874009--8874235 Score: 265
Period size: 50 Copynumber: 4.4 Consensus size: 50
8873999 TATCTTAGAT
* ** * * * *
8874009 ATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
** *
8874059 ATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
8874109 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
* ** *
8874159 ATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATTCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAACGCCATGTCCCAAAC
*
8874215 ATGGTCTTACATGGGATCTCT
1 ATGGTCTTACATGGGACCTCT
8874236 TTACCCGAAT
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
50 109 0.71
53 5 0.03
56 39 0.25
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
Found at i:8880684 original size:53 final size:54
Alignment explanation
Indices: 8880530--8880700 Score: 249
Period size: 54 Copynumber: 3.2 Consensus size: 54
8880520 CTGGCGAACT
* *
8880530 GGTTCACTAAATAGACTGGTGAA-ACCCAAGTCGACACCTTACCTGGAGAACAT-C
1 GGTTCACCAAATAGACTGGTGAACCCCCAA-TCGACACCTTACCTGGAGAAC-TCC
*
8880584 GGTTCACCAAATAGACTGGTGAACCCCCAGTCGACACCTTACCTGGAGAACTCC
1 GGTTCACCAAATAGACTGGTGAACCCCCAATCGACACCTTACCTGGAGAACTCC
* * *
8880638 GGTTCGCCAAATAGACTGG-GAACCCCCAATCGGCACCTTACCTGGAGAACACC
1 GGTTCACCAAATAGACTGGTGAACCCCCAATCGACACCTTACCTGGAGAACTCC
8880691 GGTTCACCAA
1 GGTTCACCAA
8880701 TTACACTAGC
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
53 41 0.38
54 62 0.58
55 4 0.04
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (54 bp):
GGTTCACCAAATAGACTGGTGAACCCCCAATCGACACCTTACCTGGAGAACTCC
Found at i:8910774 original size:50 final size:50
Alignment explanation
Indices: 8910649--8910936 Score: 280
Period size: 50 Copynumber: 5.7 Consensus size: 50
8910639 TGATAATAAC
* * * *
8910649 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGA-TGTTTCATGT--
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACT-TCTCATATCG
* * *
8910697 ACTGCCAACGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCG
1 A-TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCG
* * * * **
8910748 GTGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCCCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACTTCTCATATCG
* * *
8910798 ATGCCAACGCCATGTCCCATACATGGTCTTACATGGGACCTCTCATCTCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCG
* *
8910848 GTGCCAACACCATGTCCCAGACATGGTCTTACATGGGA-TCTCTCATAATTTCAATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACT-TCTCAT-A--TC---G
*
8910904 ATGCCAATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACA
8910937 CTGGCTCACA
Statistics
Matches: 199, Mismatches: 28, Indels: 18
0.81 0.11 0.07
Matches are distributed among these distances:
48 1 0.01
49 40 0.20
50 124 0.62
51 1 0.01
53 2 0.01
56 31 0.16
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCG
Found at i:8913773 original size:23 final size:23
Alignment explanation
Indices: 8913742--8913789 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
8913732 ACCTACTTTC
*
8913742 TTACTGTAGTAATTTTC-GAGGTA
1 TTACAGTAGTAATTTTCAG-GGTA
8913765 TTACAGTAGTAATTTTCAGGGTA
1 TTACAGTAGTAATTTTCAGGGTA
8913788 TT
1 TT
8913790 GGACATCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCAGGGTA
Found at i:8914203 original size:52 final size:52
Alignment explanation
Indices: 8914139--8914243 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
8914129 TTTCAAGTAC
*
8914139 TAATTAGCTCTATTTATACTTAGGTTAGGATTAATTTAGTATTATCCTCCCT
1 TAATTACCTCTATTTATACTTAGGTTAGGATTAATTTAGTATTATCCTCCCT
* *
8914191 TAATTACCTCTATTTATGCTTAGGTTAGGATTAATTTAGTATTCTCCTCCCT
1 TAATTACCTCTATTTATACTTAGGTTAGGATTAATTTAGTATTATCCTCCCT
8914243 T
1 T
8914244 GGGTATGATC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (52 bp):
TAATTACCTCTATTTATACTTAGGTTAGGATTAATTTAGTATTATCCTCCCT
Found at i:8925831 original size:41 final size:41
Alignment explanation
Indices: 8925772--8925878 Score: 178
Period size: 41 Copynumber: 2.6 Consensus size: 41
8925762 GCATTTAGTG
*
8925772 GCGTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAACG
1 GCGTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAACA
* * *
8925813 GTGTTTTTGAAGAAGCGCCGCTAATGCTCGTACCTTTAGCA
1 GCGTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAACA
8925854 GCGTTTTTGAAAAAGCGCCGCTAAT
1 GCGTTTTTGAAAAAGCGCCGCTAAT
8925879 AATAAAATCT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (41 bp):
GCGTTTTTGAAAAAGCGCCGCTAATGCTCGTACCTTTAACA
Found at i:8927419 original size:20 final size:20
Alignment explanation
Indices: 8927397--8927459 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
8927387 TTCGTGATTT
8927397 AAAATTTTAAAATGAATTTTA
1 AAAATTTTAAAATG-ATTTTA
**
8927418 AAAGATTTT-AAATCTTTTTA
1 AAA-ATTTTAAAATGATTTTA
*
8927438 AAAATTTTAAAAAGATTTTA
1 AAAATTTTAAAATGATTTTA
8927458 AA
1 AA
8927460 CTTTTATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.14
20 18 0.51
21 7 0.20
22 5 0.14
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.43
Consensus pattern (20 bp):
AAAATTTTAAAATGATTTTA
Found at i:8927427 original size:10 final size:10
Alignment explanation
Indices: 8927400--8927459 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
8927390 GTGATTTAAA
8927400 ATTTTAAAATG
1 ATTTTAAAA-G
8927411 AATTTTAAAAG
1 -ATTTTAAAAG
**
8927422 ATTTTAAATC
1 ATTTTAAAAG
*
8927432 TTTTTAAAA-
1 ATTTTAAAAG
8927441 ATTTTAAAAAG
1 ATTTT-AAAAG
8927452 ATTTTAAA
1 ATTTTAAA
8927460 CTTTTATTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
9 4 0.10
10 22 0.54
11 6 0.15
12 9 0.22
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:8931907 original size:43 final size:43
Alignment explanation
Indices: 8931801--8932167 Score: 364
Period size: 43 Copynumber: 8.8 Consensus size: 43
8931791 GTTATGTTTT
* * * * * *
8931801 TAGCGGCGTTTTTGCGAGAAGCGCCGCTAAAGGT-TTGTTCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* * ** * * * *
8931843 TAGTGGCGTTTATGATAAAAAGCGTCGCTAAAGGTCATGATCTT
1 TAGCGGCGTTTGTG-GGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* ** *
8931887 TAGCGGCATTTGTGGGAAAAGCGCCATTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* * *
8931930 TAGCGGCGTTTGTGGCAAAAGCGCCACTAAAGGTCGTGGTTTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
*
8931973 TAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* *
8932016 TAGCGGCGTTTGTGGGAAAAGCGCCGCAAAAGATCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
8932059 TAGCGGCGTTTGT-------G-G--G-TAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* * *
8932091 TAGTGGCGTTT-TCAGGAAAAGCGCTGCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* *
8932134 TAGCGGCGTTTGCGAGAAAAGCGCCGCTAAAGGT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGT
8932168 AATGACTTTT
Statistics
Matches: 272, Mismatches: 38, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
31 1 0.00
32 24 0.09
33 1 0.00
35 1 0.00
36 1 0.00
39 1 0.00
40 1 0.00
42 13 0.05
43 212 0.78
44 17 0.06
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
Found at i:8932128 original size:75 final size:75
Alignment explanation
Indices: 8932000--8932145 Score: 231
Period size: 75 Copynumber: 1.9 Consensus size: 75
8931990 AAAGCGCCGC
*
8932000 TAAAGGTCGTGGTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCAAAAGATCGTGGTCTATAGCGG
1 TAAAGGTCGTGGTCTATAGCGGCGTTTGTAGGAAAAGCGCCGCAAAAGATCGTGGTCTATAGCGG
8932065 CGTTTGTGGG
66 CGTTTGTGGG
* * * *
8932075 TAAAGGTCGTGGTCTATAGTGGCGTTT-TCAGGAAAAGCGCTGCTAAAGGTCGTGGTCTATAGCG
1 TAAAGGTCGTGGTCTATAGCGGCGTTTGT-AGGAAAAGCGCCGCAAAAGATCGTGGTCTATAGCG
8932139 GCGTTTG
65 GCGTTTG
8932146 CGAGAAAAGC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 1 0.02
75 64 0.98
ACGTcount: A:0.21, C:0.16, G:0.36, T:0.27
Consensus pattern (75 bp):
TAAAGGTCGTGGTCTATAGCGGCGTTTGTAGGAAAAGCGCCGCAAAAGATCGTGGTCTATAGCGG
CGTTTGTGGG
Found at i:8932181 original size:118 final size:118
Alignment explanation
Indices: 8931957--8932187 Score: 313
Period size: 118 Copynumber: 2.0 Consensus size: 118
8931947 AAAGCGCCAC
* *
8931957 TAAAGGTCGTGGTTTATAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGG
1 TAAAGGTCGTGGTCTATAGCAGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGG
* * ** *
8932022 CGTTTGTGGGAAAAGCGCCGCAAAAGATCGTGGTCTATAGCGGCGTTTGTGGG
66 CGTTTGCGAGAAAAGCGCCGCAAAAGATAATGCTCTATAGCGGCGTTTGTGGG
** *
8932075 TAAAGGTCGTGGTCTATAGTGGCGTTT-TCAGGAAAAGCGCTGCTAAAGGTCGTGGTCTATAGCG
1 TAAAGGTCGTGGTCTATAGCAGCGTTTGT-AGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAGCG
* * *
8932139 GCGTTTGCGAGAAAAGCGCCGCTAAAGGTAATGACT-TTTAGCGGCGTTT
65 GCGTTTGCGAGAAAAGCGCCGCAAAAGATAATG-CTCTATAGCGGCGTTT
8932188 ATTTCTAAAA
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
117 1 0.01
118 96 0.98
119 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.26
Consensus pattern (118 bp):
TAAAGGTCGTGGTCTATAGCAGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGG
CGTTTGCGAGAAAAGCGCCGCAAAAGATAATGCTCTATAGCGGCGTTTGTGGG
Found at i:8933883 original size:40 final size:40
Alignment explanation
Indices: 8933839--8934017 Score: 209
Period size: 40 Copynumber: 4.5 Consensus size: 40
8933829 ATAACTATTA
*
8933839 CCTGAATGCACATATGTGCCCCTGTTTGTACTTCGATACC
1 CCTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACC
* * * *
8933879 CCTGAATGCACATACGTGTCACTGTTTGTACTCCGATATC
1 CCTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACC
* * **
8933919 CCTAAACT-CACATACGTGCCCCTGTTTGCACTTC-AGTATG
1 CCTGAA-TGCACATACGTGCCCCTGTTTGTACTTCGA-TACC
* *
8933959 CCTGAATGCACATACGTGCCCCTGTTTGTAATTTGATACC
1 CCTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACC
* *
8933999 TCTGAATGCATATACGTGC
1 CCTGAATGCACATACGTGC
8934018 TCATGATTGT
Statistics
Matches: 116, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 2 0.02
40 112 0.97
41 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.32
Consensus pattern (40 bp):
CCTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACC
Found at i:8938892 original size:27 final size:27
Alignment explanation
Indices: 8938860--8938926 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
8938850 CATTCTGACC
*
8938860 CACAGCTCGTGTGAAG-AGGGCCCATTT
1 CACAGCTCGTGTGAAGCA-GACCCATTT
* *
8938887 CACAGCTTGTGTG-AGCAGATCCATTT
1 CACAGCTCGTGTGAAGCAGACCCATTT
*
8938913 CACAACTCGTGTGA
1 CACAGCTCGTGTGA
8938927 GCAATGATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (27 bp):
CACAGCTCGTGTGAAGCAGACCCATTT
Found at i:8943958 original size:40 final size:40
Alignment explanation
Indices: 8943901--8944197 Score: 380
Period size: 40 Copynumber: 7.4 Consensus size: 40
8943891 AATTATTGCT
* * *
8943901 TGAATGCACATATGTGCCCCTTTTTCTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * *
8943941 TGAATGCACACACGTGCCCCTGTTTATACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * ** * *
8943981 TAAATGCACATACATGCTGCTGTTTGTACTTCAATACTCTC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATAC-CCC
*
8944022 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
8944062 TGAATGCACAT-CGTGCCCCTGTTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * * *
8944101 TGAATGCACATATGTGCCCCTATTTATACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * **
8944141 TGAATGCACATACGCGCCCCTATTTGTACTTCGATACCTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
*
8944181 TGAATGCATATACGTGC
1 TGAATGCACATACGTGC
8944198 TCGCTTGATA
Statistics
Matches: 221, Mismatches: 34, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 38 0.17
40 150 0.68
41 33 0.15
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
Found at i:8944063 original size:20 final size:20
Alignment explanation
Indices: 8944038--8944102 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
8944028 CACATACGTG
8944038 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
** * * *
8944058 CCCCTGAATGCACATC-GTG
1 CCCCTGTTTGTACTTCGGTA
*
8944077 CCCCTGTTTGTACTTCGATA
1 CCCCTGTTTGTACTTCGGTA
8944097 CCCCTG
1 CCCCTG
8944103 AATGCACATA
Statistics
Matches: 33, Mismatches: 11, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
19 14 0.42
20 19 0.58
ACGTcount: A:0.14, C:0.35, G:0.18, T:0.32
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:8946375 original size:17 final size:19
Alignment explanation
Indices: 8946337--8946375 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
8946327 ACTCATGCAC
8946337 CAAC-AAAAAATCCTAAAA
1 CAACAAAAAAATCCTAAAA
8946355 -AACAAAAAAAT-C-AAAA
1 CAACAAAAAAATCCTAAAA
8946371 CAACA
1 CAACA
8946376 TATTAACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.21
17 8 0.42
18 7 0.37
ACGTcount: A:0.72, C:0.21, G:0.00, T:0.08
Consensus pattern (19 bp):
CAACAAAAAAATCCTAAAA
Found at i:8958624 original size:18 final size:18
Alignment explanation
Indices: 8958601--8958645 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
8958591 AGTATGGGTT
8958601 ATGCACTTATGCCCCAGG
1 ATGCACTTATGCCCCAGG
* **
8958619 ATGCACCTTGTGTGCCAGG
1 ATGCA-CTTATGCCCCAGG
8958638 ATGCACTT
1 ATGCACTT
8958646 CATATGCTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (18 bp):
ATGCACTTATGCCCCAGG
Found at i:8969803 original size:21 final size:20
Alignment explanation
Indices: 8969777--8969817 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
8969767 GATTTAGAAA
* *
8969777 TTATTATCAATTTTATTGTTT
1 TTATTATAAATTCTA-TGTTT
8969798 TTATTATAAATTCTATGTTT
1 TTATTATAAATTCTATGTTT
8969818 GAATATGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (20 bp):
TTATTATAAATTCTATGTTT
Found at i:8970183 original size:18 final size:19
Alignment explanation
Indices: 8970143--8970184 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
8970133 TTTCAAAAAG
* **
8970143 AAAAAATAAAAATAATTTT
1 AAAATATAAAAATAATTCC
8970162 AAAATATAAAAAT-ATTCC
1 AAAATATAAAAATAATTCC
8970180 AAAAT
1 AAAAT
8970185 TCAATGTTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATATAAAAATAATTCC
Found at i:8970589 original size:20 final size:21
Alignment explanation
Indices: 8970566--8970604 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8970556 GAAATTTTTG
8970566 AAATTT-TTTTTATATTTAAA
1 AAATTTATTTTTATATTTAAA
*
8970586 AAATTTATTTTTATTTTTA
1 AAATTTATTTTTATATTTA
8970605 TTTTTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
AAATTTATTTTTATATTTAAA
Found at i:8970618 original size:34 final size:36
Alignment explanation
Indices: 8970570--8970643 Score: 91
Period size: 34 Copynumber: 2.1 Consensus size: 36
8970560 TTTTTGAAAT
*
8970570 TTTTTTTATATTTAAAAAATTTATTTTTA-TTTTT-A
1 TTTTTTAATATTTAAAAAATTT-TTTTTACTTTTTCA
* *
8970605 TTTTTTAAT-TTTAATAAGTTTTTTTTACTTTTTCA
1 TTTTTTAATATTTAAAAAATTTTTTTTACTTTTTCA
8970640 TTTT
1 TTTT
8970644 AAAAAATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 6 0.18
34 15 0.44
35 13 0.38
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (36 bp):
TTTTTTAATATTTAAAAAATTTTTTTTACTTTTTCA
Found at i:8972188 original size:18 final size:18
Alignment explanation
Indices: 8972165--8972202 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8972155 AAACGGTTAG
* *
8972165 ATTAAAAAATTATTAAAA
1 ATTAAAAAATAATAAAAA
8972183 ATTAAAAAATAATAAAAA
1 ATTAAAAAATAATAAAAA
8972201 AT
1 AT
8972203 CTATTTCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
ATTAAAAAATAATAAAAA
Found at i:8973965 original size:106 final size:106
Alignment explanation
Indices: 8973774--8974312 Score: 875
Period size: 106 Copynumber: 5.1 Consensus size: 106
8973764 ATAACATGGA
* *
8973774 TTGAAA-TTTAAGAGGATATTTGGCTATTTGGTCGAACGAGAAAAAC-AAACCCAGCACGTTAGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAG-AAATCGAAACCCAGCACGTTAGG
* * * *
8973837 GCACGTTTTCTCAAATTTCCAAACGCAAAATATTACCTTGCT
65 GCACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
* *
8973879 TTGAAATTTTAAAAGTATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
* *
8973944 CACGTTTTCTCGATTTTCCAAACGTAAAATATTGCCTTACG
66 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
8973985 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
* *
8974050 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTGCT
66 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
* * *
8974091 TTGAAATTTTAAAAGAATATTTGGCTATTTGGTCGAACGACAAATCAAAACCCAGCACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
*
8974156 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACG
66 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
* *
8974197 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAAACCAGCACGTTAGGC
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
* *
8974262 CACGTTTTCTCGATTTTCCGAACGCAAAATATTGTCTTACT
66 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
8974303 TTGAAATTTT
1 TTGAAATTTT
8974313 TGAATTAGAA
Statistics
Matches: 402, Mismatches: 30, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
105 10 0.02
106 392 0.98
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (106 bp):
TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
Found at i:8976534 original size:44 final size:44
Alignment explanation
Indices: 8976382--8976720 Score: 168
Period size: 44 Copynumber: 7.8 Consensus size: 44
8976372 GGATTCATCA
* * * * * *
8976382 TTTTAATCCGCTCCATTACAGCTTCAGGGAGATAGGAT-TAATAG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCT-GTGG
* * * * *
8976426 CTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAG-GCT-T-G
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGG
* ** * * * **
8976467 ATGCAAACTGCTCTACTGCAACTTCAGAAAGATAAGATCTGTGG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGG
* *
8976511 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATATGAT-TG-GT
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGG
** * *
8976553 TTCTTCTGTCTC-CTCCACTACAACTTCAGGGAGATAAGAACTGATGCG
1 TT-TT-AATC-CGCTCCACTGCAACTTCAGGGAGATAAGATCTG-TG-G
* * * *
8976601 -----ATCTGCTCTACTGCAACTTCAGAGAGATAACA-CATGTGG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATC-TGTGG
* * *
8976640 TTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGAT-TG-GT
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGG
* * * *
8976682 TTCTTATTTCTGCTCCACTGCAACTTCAGGTATATAAGA
1 TT-TTA-ATCCGCTCCACTGCAACTTCAGGGAGATAAGA
8976721 CTGGATGCGA
Statistics
Matches: 222, Mismatches: 52, Indels: 42
0.70 0.16 0.13
Matches are distributed among these distances:
39 1 0.00
40 3 0.01
41 57 0.26
42 9 0.04
43 10 0.05
44 138 0.62
45 3 0.01
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGG
Found at i:8976582 original size:129 final size:129
Alignment explanation
Indices: 8976382--8976785 Score: 501
Period size: 129 Copynumber: 3.1 Consensus size: 129
8976372 GGATTCATCA
* * ** ** * *
8976382 TTTTAATCCGCTCCATTACAGCTTCAGGGAGATAGGATTAATAGCTTCAATCTGCTCCGCTGCAA
1 TTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGGTTTCTTCTATCTGCTCCACTGCAA
* *
8976447 CTTCAGGGAGATAAGGCTTGATGCAAACTGCTCTACTGCAACTTCAGAAAGATAAGATCTGTGG
66 CTTCAGGGAGATAAGACTTGATGCAAACTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
* * * * *
8976511 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATATGATTGGTTTCTTCTGTCTCCTCCACTACAA
1 TTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGGTTTCTTCTATCTGCTCCACTGCAA
* * *
8976576 CTTCAGGGAGATAAGAAC-TGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAACA-CATGTG
66 CTTCAGGGAGATAAG-ACTTGATGCAAACTGCTCTACTGCAACTTCAGAGAGATAAGATC-TGTG
8976639 G
129 G
* *
8976640 TTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGGTTTCTTATTTCTGCTCCACTGCAA
1 TTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGGTTTCTTCTATCTGCTCCACTGCAA
* * * * * *
8976705 CTTCAGGTATATAAGACTGGATGCGATA-TGCTCTACTGCAACTTTAGAGAGATAATG-TATGTG
66 CTTCAGGGAGATAAGACTTGATGC-AAACTGCTCTACTGCAACTTCAGAGAGATAA-GATCTGTG
8976768 G
129 G
*
8976769 TTTTAATCCACTCCACT
1 TTTTAATCCGCTCCACT
8976786 GTCTGCTCCA
Statistics
Matches: 235, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
128 3 0.01
129 231 0.98
130 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (129 bp):
TTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGGTTTCTTCTATCTGCTCCACTGCAA
CTTCAGGGAGATAAGACTTGATGCAAACTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
Found at i:8976869 original size:97 final size:97
Alignment explanation
Indices: 8976690--8976870 Score: 283
Period size: 97 Copynumber: 1.9 Consensus size: 97
8976680 GTTTCTTATT
* * *
8976690 TCTGCTCCACTGCAACTTCAGGTATATAAGACTGGATGCGATATGCTCTACTGCAACTTTAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATATGCTCTACTGCAACTTCAGAGA
*
8976755 GATAATGTATGTGGTTTTAATCCACTCCACTG
66 GATAATGTATGTAGTTTTAATCCACTCCACTG
* *
8976787 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATATGCTCTACTGCAACTTCAGAGA
*
8976852 GATAA-GATCTGTAGTTTTA
66 GATAATG-TATGTAGTTTTA
8976871 CTGATCTGTT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
96 1 0.01
97 75 0.99
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (97 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATATGCTCTACTGCAACTTCAGAGA
GATAATGTATGTAGTTTTAATCCACTCCACTG
Found at i:8982142 original size:3 final size:3
Alignment explanation
Indices: 8982134--8982191 Score: 66
Period size: 3 Copynumber: 19.3 Consensus size: 3
8982124 ATAAATATAT
* *
8982134 ATA ATA ATA AAA ATA ATA ATA AGTA AT- ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
8982179 TATA AT- ATA ATA A
1 -ATA ATA ATA ATA A
8982192 CAAAGATAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
2 4 0.09
3 37 0.79
4 6 0.13
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8982142 original size:12 final size:12
Alignment explanation
Indices: 8982127--8982191 Score: 53
Period size: 12 Copynumber: 5.2 Consensus size: 12
8982117 TATGCGCATA
8982127 AATATATATAAT
1 AATATATATAAT
* *
8982139 AATAAAAATAAT
1 AATATATATAAT
8982151 AATAAGTAATATAAT
1 AAT-A-T-ATATAAT
8982166 AATA-ATAGTAAT
1 AATATATA-TAAT
8982178 -ATATAATATAAT
1 AATAT-ATATAAT
8982190 AA
1 AA
8982192 CAAAGATAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
11 6 0.14
12 21 0.50
13 5 0.12
14 1 0.02
15 9 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
AATATATATAAT
Found at i:8982154 original size:24 final size:25
Alignment explanation
Indices: 8982127--8982200 Score: 80
Period size: 24 Copynumber: 3.0 Consensus size: 25
8982117 TATGCGCATA
8982127 AATAT-ATATAATAATAAAAATAAT
1 AATATAATATAATAATAAAAATAAT
* *
8982151 AATAAGTAATATAATAATAATAGTAAT
1 AAT-A-TAATATAATAATAAAAATAAT
* *
8982178 -ATATAATATAATAACAAAGATAA
1 AATATAATATAATAATAAAAATAA
8982201 CAGCAGCTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
24 19 0.46
25 2 0.05
26 3 0.07
27 17 0.41
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (25 bp):
AATATAATATAATAATAAAAATAAT
Found at i:8982752 original size:21 final size:21
Alignment explanation
Indices: 8982726--8982767 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8982716 TGTTTTAAAG
8982726 AACAAGAAAG-AAAATAAAGAA
1 AACAAGAAAGTAAAA-AAAGAA
*
8982747 AACAAGACAGTAAAAAAAGAA
1 AACAAGAAAGTAAAAAAAGAA
8982768 GAAAATAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.74, C:0.07, G:0.14, T:0.05
Consensus pattern (21 bp):
AACAAGAAAGTAAAAAAAGAA
Found at i:8983611 original size:44 final size:42
Alignment explanation
Indices: 8983471--8983880 Score: 252
Period size: 44 Copynumber: 9.7 Consensus size: 42
8983461 TATTTTTAGT
* * *
8983471 CTGCTCCACTGCAACTTCAGGGAGATAAGACTGGA-TGCGAT-
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTC-TTC
* * ** **
8983512 CTGCT-CTCTGCAACCTCAGAAAGATAAGATCTTGATGTTAATC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGAT-TTCTTC
* *
8983555 C-GCTACACTGCAACTTCAGGGAGATAGGA-TTGATTTCTTC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTC
* * **
8983595 TGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGA-TGCGAC
1 ---CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTC
* * * * ** **
8983639 CTACT-CTCTGTAACCTCAGAAAGATAAGATCTTGATGTTAATC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGAT-TTCTTC
*
8983682 C-GCTCCACTGCAACTTCAGGGAGATAGGA-TTGATTTCTTC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTC
* * **
8983722 TGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGA-TGCGAC
1 ---CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTC
* * * * ** **
8983766 CTACT-CTCTGTAACCTCAGAAAGATAAGATCTTGATGTTAATC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGAT-TTCTTC
*
8983809 C-GCTCCACTGCAACTTCAGGGAGATAGGA-TTGATTTCTTC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTC
8983849 TGTCTGCTCCACTGCAACTTCAGGGAGATAAG
1 ---CTGCTCCACTGCAACTTCAGGGAGATAAG
8983881 TCTGTTTCAC
Statistics
Matches: 276, Mismatches: 66, Indels: 51
0.70 0.17 0.13
Matches are distributed among these distances:
40 70 0.25
41 40 0.14
42 9 0.03
43 66 0.24
44 85 0.31
45 6 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (42 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTC
Found at i:8983695 original size:127 final size:127
Alignment explanation
Indices: 8983469--8983880 Score: 788
Period size: 127 Copynumber: 3.2 Consensus size: 127
8983459 GCTATTTTTA
* * *
8983469 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTCTGCAACCTCAGAAA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGACCTACTCTCTGTAACCTCAGAAA
*
8983534 GATAAGATCTTGATGTTAATCCGCTACACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
66 GATAAGATCTTGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
8983596 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGACCTACTCTCTGTAACCTCAGAAA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGACCTACTCTCTGTAACCTCAGAAA
8983661 GATAAGATCTTGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
66 GATAAGATCTTGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
8983723 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGACCTACTCTCTGTAACCTCAGAAA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGACCTACTCTCTGTAACCTCAGAAA
8983788 GATAAGATCTTGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
66 GATAAGATCTTGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
8983850 GTCTGCTCCACTGCAACTTCAGGGAGATAAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAG
8983881 TCTGTTTCAC
Statistics
Matches: 281, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 281 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (127 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGACCTACTCTCTGTAACCTCAGAAA
GATAAGATCTTGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
Found at i:8989397 original size:25 final size:25
Alignment explanation
Indices: 8989362--8989423 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
8989352 ATTATGAAAT
*
8989362 GAAT-AAAGAATGATGTA-GAAAAAA
1 GAATAAAAGAATAAT-TACGAAAAAA
**
8989386 GAATAAAAGAATAATTACTCAAAAA
1 GAATAAAAGAATAATTACGAAAAAA
8989411 GAATAAAAGAATA
1 GAATAAAAGAATA
8989424 CTGGCTCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 6 0.18
25 27 0.82
ACGTcount: A:0.65, C:0.03, G:0.15, T:0.18
Consensus pattern (25 bp):
GAATAAAAGAATAATTACGAAAAAA
Found at i:8989431 original size:25 final size:25
Alignment explanation
Indices: 8989381--8989435 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
8989371 ATGATGTAGA
*
8989381 AAAAAGAATAAAAGAATAATTACTC
1 AAAAAGAATAAAAGAATAATGACTC
* *
8989406 AAAAAGAATAAAAGAATACTGGCTC
1 AAAAAGAATAAAAGAATAATGACTC
8989431 AAAAA
1 AAAAA
8989436 TGCATACGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.64, C:0.09, G:0.11, T:0.16
Consensus pattern (25 bp):
AAAAAGAATAAAAGAATAATGACTC
Found at i:8992657 original size:38 final size:38
Alignment explanation
Indices: 8992601--8992677 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
8992591 ACATAGAATA
8992601 GGCTACAAATATGACTTTGCCCTAATACTTAAAACCTT
1 GGCTACAAATATGACTTTGCCCTAATACTTAAAACCTT
* *
8992639 GGCTACAAATATGGCTTTGCCCTAATACTTAAGACCTT
1 GGCTACAAATATGACTTTGCCCTAATACTTAAAACCTT
8992677 G
1 G
8992678 ATCTTTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (38 bp):
GGCTACAAATATGACTTTGCCCTAATACTTAAAACCTT
Found at i:8996579 original size:21 final size:21
Alignment explanation
Indices: 8996553--8996594 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8996543 TGTTTTAAAG
8996553 AACAAGAAAG-AAAATAAAGAA
1 AACAAGAAAGTAAAA-AAAGAA
*
8996574 AACAAGACAGTAAAAAAAGAA
1 AACAAGAAAGTAAAAAAAGAA
8996595 GAAAATAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.74, C:0.07, G:0.14, T:0.05
Consensus pattern (21 bp):
AACAAGAAAGTAAAAAAAGAA
Found at i:9004221 original size:106 final size:106
Alignment explanation
Indices: 9003955--9004386 Score: 654
Period size: 106 Copynumber: 4.1 Consensus size: 106
9003945 ATAACATGGA
* * *
9003955 TTGAAA-TTTAAGAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCA-AGTTAGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCAAAACCCAGCACA-TTAGG
* * * *
9004018 GCACGTTTTCTCGAATTTCCCAACGCAAAATATTACCTTGCT
65 GCACGTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTACT
*
9004060 TTGAAA-TTTAATAGGATATTTGGCTATTTGGTCGAACGAGAAATCAAAACCCAGCACATTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCAAAACCCAGCACATTAGGG
* *
9004124 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
66 CACGTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTACT
* *
9004165 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCAAAACCCAGCACATTAGGG
* * *
9004230 CACATTTTCTCAAATTTCCAAACGCAAAATATTTCCTTGCT
66 CACGTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTACT
* * *
9004271 TTGAAATTTTAAAAGGATATTTGACTATTTGGTCGAACGAGAAATCAAAACCCAACACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCAAAACCCAGCACATTAGGG
* *
9004336 CATGTTTTCTCAATTTTCCAAACGCAAAATATTGCCTTACT
66 CACGTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTACT
9004377 TTGAAATTTT
1 TTGAAATTTT
9004387 TGAATTAGAA
Statistics
Matches: 302, Mismatches: 23, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
105 102 0.34
106 200 0.66
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (106 bp):
TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCAAAACCCAGCACATTAGGG
CACGTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTACT
Found at i:9004684 original size:4 final size:4
Alignment explanation
Indices: 9004675--9004708 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
9004665 TAGTAAAAAG
9004675 TAAA TAAA TAAA TAAA TAAA T-AA TAGAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA-AA TAAA TA
9004709 GAATTATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 21 0.75
5 4 0.14
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:9015627 original size:19 final size:19
Alignment explanation
Indices: 9015603--9015641 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
9015593 CAAGTGAGGC
*
9015603 AAGCGCTAGATCAATTCTA
1 AAGCGCTAGATAAATTCTA
9015622 AAGCGCTAGATAAATTCTA
1 AAGCGCTAGATAAATTCTA
9015641 A
1 A
9015642 CCTAAACACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (19 bp):
AAGCGCTAGATAAATTCTA
Found at i:9021139 original size:19 final size:19
Alignment explanation
Indices: 9021111--9021150 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9021101 ATTAATTTTG
*
9021111 ATCAAGTAAAATTAAATTA
1 ATCAAATAAAATTAAATTA
*
9021130 ATCAAATAAATTTAAATTA
1 ATCAAATAAAATTAAATTA
9021149 AT
1 AT
9021151 ATGATGTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATCAAATAAAATTAAATTA
Found at i:9023035 original size:17 final size:18
Alignment explanation
Indices: 9023005--9023040 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
9022995 TACATTCTTG
*
9023005 ATATGTTGTTGAATACAA
1 ATATGTTGTAGAATACAA
9023023 ATAT-TTGTAGAATACAA
1 ATATGTTGTAGAATACAA
9023040 A
1 A
9023041 AATAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (18 bp):
ATATGTTGTAGAATACAA
Found at i:9026026 original size:56 final size:51
Alignment explanation
Indices: 9025948--9026139 Score: 194
Period size: 50 Copynumber: 3.7 Consensus size: 51
9025938 GGTGATGAGA
9025948 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGACTATGAGAGG
1 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCA-C---GAGA-TATGAGAGG
* *
9026004 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG--ATGAGAGG
1 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCA-CGAGATATGAGAGG
** * * * **
9026054 TCCCCCATAAGACCATGTTTGGGAC-TGGCATGGGCAC-CGATATGAGAAC
1 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCACGAGATATGAGAGG
* * *
9026103 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCA
9026140 GTACAGGAAA
Statistics
Matches: 114, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 34 0.30
50 39 0.34
53 3 0.03
56 36 0.32
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (51 bp):
TCCCATATAAGACCATGTCTGGGACATGGCATTGGCACGAGATATGAGAGG
Found at i:9026114 original size:49 final size:50
Alignment explanation
Indices: 9025948--9026178 Score: 189
Period size: 49 Copynumber: 4.5 Consensus size: 50
9025938 GGTGATGAGA
* * *
9025948 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGACTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-C----CGA-TATGAGAGG
* * *
9026004 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAGG
*** * **
9026054 TCCCCCATAAGACCATGTTTGGGAC-TGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAGG
* * * * * * **
9026103 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAGGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCG-ATATGAGAGG
*
9026152 TCCCATGTAAGACTATGTCTGGGACAT
1 TCCCATGTAAGACCATGTCTGGGACAT
9026179 AGCTTTGGCA
Statistics
Matches: 145, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 67 0.46
50 39 0.27
51 2 0.01
55 1 0.01
56 35 0.24
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAGG
Found at i:9026440 original size:20 final size:20
Alignment explanation
Indices: 9026402--9026440 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9026392 TAAGCAAGCA
*
9026402 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
9026422 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
9026441 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:9027953 original size:30 final size:30
Alignment explanation
Indices: 9027917--9028107 Score: 161
Period size: 30 Copynumber: 6.3 Consensus size: 30
9027907 GTTACTCCAA
** *
9027917 CCCTTTTCATAGCTCGATAGCTGAAGCTAT
1 CCCTTTTCATAATTCGATAGCCGAAGCTAT
* * * * *
9027947 CCCTTTTCATTATTTGATGGTCGTTAGC-AT
1 CCCTTTTCATAATTCGATAGCCG-AAGCTAT
* *
9027977 CCATTTTCATAATTGGATAGCCGAAGCTAT
1 CCCTTTTCATAATTCGATAGCCGAAGCTAT
* * * *
9028007 CCCTTTCCATGATTCGATAGCCAAAGCTAC
1 CCCTTTTCATAATTCGATAGCCGAAGCTAT
* *
9028037 CCCTTTTCATAATTTGATAGCCGAAACTAT
1 CCCTTTTCATAATTCGATAGCCGAAGCTAT
* * *
9028067 CCCTTTTCATTATTTTGAAAGCC-ATAGCTAT
1 CCCTTTTCA-TAATTCGATAGCCGA-AGCTAT
*
9028098 CTCTTTTCAT
1 CCCTTTTCAT
9028108 TAGCCGAGGA
Statistics
Matches: 127, Mismatches: 30, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
29 3 0.02
30 97 0.76
31 27 0.21
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (30 bp):
CCCTTTTCATAATTCGATAGCCGAAGCTAT
Found at i:9027996 original size:60 final size:60
Alignment explanation
Indices: 9027932--9028096 Score: 179
Period size: 60 Copynumber: 2.7 Consensus size: 60
9027922 TTCATAGCTC
* * *** *
9027932 GATAGCTGAAGCTATCCCTTTTCATTATTTGATGGTCGTTAGC-ATCCATTTTCATAATTG
1 GATAGCCGAAGCTATCCCTTTTCATTATTTGATAG-CCAAAGCTACCCATTTTCATAATTG
* * * * *
9027992 GATAGCCGAAGCTATCCCTTTCCATGATTCGATAGCCAAAGCTACCCCTTTTCATAATTT
1 GATAGCCGAAGCTATCCCTTTTCATTATTTGATAGCCAAAGCTACCCATTTTCATAATTG
* * *
9028052 GATAGCCGAAACTATCCCTTTTCATTATTTTGAAAGCCATAGCTA
1 GATAGCCGAAGCTATCCCTTTTCATTA-TTTGATAGCCAAAGCTA
9028097 TCTCTTTTCA
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
59 4 0.05
60 68 0.79
61 14 0.16
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (60 bp):
GATAGCCGAAGCTATCCCTTTTCATTATTTGATAGCCAAAGCTACCCATTTTCATAATTG
Found at i:9030316 original size:45 final size:44
Alignment explanation
Indices: 9030134--9030323 Score: 166
Period size: 45 Copynumber: 4.2 Consensus size: 44
9030124 TACACAGTTG
* * * * * *
9030134 ATCAGCACACAG-TACCACCCTTATAGTCAATAGTACTCGGTGAA
1 ATCAGCACATAGCAACCACCTTTATAATCATTGGTA-TCGGTGAA
* * * *
9030178 ATCAGTACATAGCAACCACCTTTATACTCAATGGTACCGGGTGAA
1 ATCAGCACATAGCAACCACCTTTATAATCATTGGTATC-GGTGAA
* * * *
9030223 GTAAGCACATAGCAACCACCTATATAACCATTGGTATTCGGTGAA
1 ATCAGCACATAGCAACCACCTTTATAATCATTGGTA-TCGGTGAA
** ** *
9030268 ATCAGCACATAGCAACCACCTTTATTTTCATTAATATCAGGTGGA
1 ATCAGCACATAGCAACCACCTTTATAATCATTGGTATC-GGTGAA
9030313 ATCAGCACATA
1 ATCAGCACATA
9030324 ACATCCATCT
Statistics
Matches: 118, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
44 13 0.11
45 104 0.88
46 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (44 bp):
ATCAGCACATAGCAACCACCTTTATAATCATTGGTATCGGTGAA
Found at i:9030320 original size:90 final size:90
Alignment explanation
Indices: 9030170--9030337 Score: 212
Period size: 90 Copynumber: 1.9 Consensus size: 90
9030160 TCAATAGTAC
* ** * *
9030170 TCGGTGAAATCAGTACATAGCAACCACCTTTATACTCAATGGTACCGGGTGAAGTAAGCACATAG
1 TCGGTGAAATCAGCACATAGCAACCACCTTTATACTCAATAATACCAGGTGAAGTAAGCACATAA
9030235 CAACCACCTATATAACCATTGGTAT
66 CAACCACCTATATAACCATTGGTAT
** * * *
9030260 TCGGTGAAATCAGCACATAGCAACCACCTTTATTTTCATTAATATCAGGTGGAA-TCAGCACATA
1 TCGGTGAAATCAGCACATAGCAACCACCTTTATACTCAATAATACCAGGT-GAAGTAAGCACATA
* *
9030324 ACATCCATCTATAT
65 ACAACCACCTATAT
9030338 TTCCAACGAT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
90 62 0.95
91 3 0.05
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (90 bp):
TCGGTGAAATCAGCACATAGCAACCACCTTTATACTCAATAATACCAGGTGAAGTAAGCACATAA
CAACCACCTATATAACCATTGGTAT
Found at i:9038179 original size:30 final size:30
Alignment explanation
Indices: 9038145--9038214 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
9038135 GTTGTTCCAA
* * *
9038145 CCCTTTTCATAGTTCGATAG-CTGAAGCTAT
1 CCCTTTTCATAGCTCAATAGCCT-AAGCCAT
*
9038175 CCCTTTTTATAGCTCAATAGCCTAAGCCAT
1 CCCTTTTCATAGCTCAATAGCCTAAGCCAT
9038205 CCCTTTTCAT
1 CCCTTTTCAT
9038215 TATTTGATGG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (30 bp):
CCCTTTTCATAGCTCAATAGCCTAAGCCAT
Found at i:9038235 original size:30 final size:30
Alignment explanation
Indices: 9038201--9038486 Score: 258
Period size: 30 Copynumber: 9.6 Consensus size: 30
9038191 ATAGCCTAAG
9038201 CCATCCCTTTTCATTATTTGATGGTCGTCA
1 CCATCCCTTTTCATTATTTGATGGTCGTCA
* * *
9038231 CCATCCTTTTTCATT-GTTGATGGTCATCA
1 CCATCCCTTTTCATTATTTGATGGTCGTCA
9038260 CCATCCCTTTTCATTATTTGATGGTCGTCA
1 CCATCCCTTTTCATTATTTGATGGTCGTCA
* *
9038290 CCATCCTTTTTCATTA-TTGATGGCCGTCA
1 CCATCCCTTTTCATTATTTGATGGTCGTCA
* * * * * **
9038319 CTATCCCTTTTCATAATTTAATAGCCGAAA
1 CCATCCCTTTTCATTATTTGATGGTCGTCA
* * * ** *
9038349 CTATCCCTTTTCATAATTAGACAG-C-TGAA
1 CCATCCCTTTTCATTATTTGATGGTCGT-CA
* * * * *
9038378 GCTATCCATTTTCATTGTTCGATGGTCATCA
1 -CCATCCCTTTTCATTATTTGATGGTCGTCA
9038409 CCATCCCTTTTCATTA-TTGATGGTCGTCA
1 CCATCCCTTTTCATTATTTGATGGTCGTCA
* * **
9038438 CCATCCCTTTTCATAATTTGATAGTCGAAA
1 CCATCCCTTTTCATTATTTGATGGTCGTCA
* *
9038468 CTATCCTTTTTCATTATTT
1 CCATCCCTTTTCATTATTT
9038487 TCATAGTCGA
Statistics
Matches: 211, Mismatches: 38, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
29 80 0.38
30 128 0.61
31 2 0.01
32 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.42
Consensus pattern (30 bp):
CCATCCCTTTTCATTATTTGATGGTCGTCA
Found at i:9038239 original size:59 final size:59
Alignment explanation
Indices: 9038176--9038303 Score: 170
Period size: 59 Copynumber: 2.2 Consensus size: 59
9038166 TGAAGCTATC
*
9038176 CCTTTTT-ATAGCTCAATAG-CCTAAGCCATCCCTTTTCATTATTTGATGGTCGTCACCAT
1 CCTTTTTCATAG-TCAATAGTCATAA-CCATCCCTTTTCATTATTTGATGGTCGTCACCAT
* ** * *
9038235 CCTTTTTCATTGTTGATGGTCATCACCATCCCTTTTCATTATTTGATGGTCGTCACCAT
1 CCTTTTTCATAGTCAATAGTCATAACCATCCCTTTTCATTATTTGATGGTCGTCACCAT
9038294 CCTTTTTCAT
1 CCTTTTTCAT
9038304 TATTGATGGC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
59 55 0.90
60 6 0.10
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.43
Consensus pattern (59 bp):
CCTTTTTCATAGTCAATAGTCATAACCATCCCTTTTCATTATTTGATGGTCGTCACCAT
Found at i:9038304 original size:59 final size:59
Alignment explanation
Indices: 9038201--9038485 Score: 286
Period size: 59 Copynumber: 4.8 Consensus size: 59
9038191 ATAGCCTAAG
* *
9038201 CCATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTGTTGATGGTCATCA
1 CCATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTATTGATGGTCGTCA
*
9038260 CCATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTATTGATGGCCGTCA
1 CCATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTATTGATGGTCGTCA
* * * * * ** * * * ** *
9038319 CTATCCCTTTTCATAATTTAATAGCCGAAACTATCCCTTTTCATAATTAGACAG-C-TGAA
1 CCATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTATT-GATGGTCGT-CA
* * * * * *
9038378 GCTATCCATTTTCATTGTTCGATGGTCATCACCATCCCTTTTCATTATTGATGGTCGTCA
1 -CCATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTATTGATGGTCGTCA
* * ** *
9038438 CCATCCCTTTTCATAATTTGATAGTCGAAACTATCCTTTTTCATTATT
1 CCATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTATT
9038486 TTCATAGTCG
Statistics
Matches: 179, Mismatches: 42, Indels: 10
0.77 0.18 0.04
Matches are distributed among these distances:
58 1 0.01
59 136 0.76
60 41 0.23
61 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.42
Consensus pattern (59 bp):
CCATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTATTGATGGTCGTCA
Found at i:9038410 original size:119 final size:119
Alignment explanation
Indices: 9038262--9038481 Score: 350
Period size: 119 Copynumber: 1.8 Consensus size: 119
9038252 GGTCATCACC
* * * * *
9038262 ATCCCTTTTCATTATTTGATGGTCGTCACCATCCTTTTTCATTATTGATGGCCGTCACTATCCCT
1 ATCCATTTTCATTATTCGATGGTCATCACCATCCCTTTTCATTATTGATGGCCGTCACCATCCCT
9038327 TTTCATAATTTAATAGCCGAAACTATCCCTTTTCATAATTAGACAGCTGAAGCT
66 TTTCATAATTTAATAGCCGAAACTATCCCTTTTCATAATTAGACAGCTGAAGCT
* *
9038381 ATCCATTTTCATTGTTCGATGGTCATCACCATCCCTTTTCATTATTGATGGTCGTCACCATCCCT
1 ATCCATTTTCATTATTCGATGGTCATCACCATCCCTTTTCATTATTGATGGCCGTCACCATCCCT
* * *
9038446 TTTCATAATTTGATAGTCGAAACTATCCTTTTTCAT
66 TTTCATAATTTAATAGCCGAAACTATCCCTTTTCAT
9038482 TATTTTCATA
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
119 91 1.00
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (119 bp):
ATCCATTTTCATTATTCGATGGTCATCACCATCCCTTTTCATTATTGATGGCCGTCACCATCCCT
TTTCATAATTTAATAGCCGAAACTATCCCTTTTCATAATTAGACAGCTGAAGCT
Found at i:9038495 original size:31 final size:31
Alignment explanation
Indices: 9038318--9038514 Score: 124
Period size: 30 Copynumber: 6.5 Consensus size: 31
9038308 GATGGCCGTC
* *
9038318 ACTATCCCTTTTCA-TAATTTAATAGCCGAA
1 ACTATCCCTTTTCATTAATTTCATAGTCGAA
** *
9038348 ACTATCCCTTTTCA-TAATTAGACAG-CTGAA
1 ACTATCCCTTTTCATTAATTTCATAGTC-GAA
* * * * *
9038378 GCTATCCATTTTCATT--GTTCGATGGTC-ATC
1 ACTATCCCTTTTCATTAATTTC-ATAGTCGA-A
* * * **
9038408 ACCATCCCTTTTCATT-A-TTGATGGTCGTC
1 ACTATCCCTTTTCATTAATTTCATAGTCGAA
* *
9038437 ACCATCCCTTTTCA-TAATTTGATAGTCGAA
1 ACTATCCCTTTTCATTAATTTCATAGTCGAA
* *
9038467 ACTATCCTTTTTCATTATTTTCATAGTCGAA
1 ACTATCCCTTTTCATTAATTTCATAGTCGAA
*
9038498 GCTATCCCTTTTCATTA
1 ACTATCCCTTTTCATTA
9038515 GCCGAGGATT
Statistics
Matches: 132, Mismatches: 25, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
28 1 0.01
29 25 0.19
30 75 0.57
31 31 0.23
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.41
Consensus pattern (31 bp):
ACTATCCCTTTTCATTAATTTCATAGTCGAA
Found at i:9041029 original size:654 final size:654
Alignment explanation
Indices: 9039781--9041090 Score: 2620
Period size: 654 Copynumber: 2.0 Consensus size: 654
9039771 GAAACCAACT
9039781 ATGCCTTCGGTTCTACCTCGTGTAGATAGGAAGAAGGCTAAGAAGTCAAAAGATCCTAAAATGAT
1 ATGCCTTCGGTTCTACCTCGTGTAGATAGGAAGAAGGCTAAGAAGTCAAAAGATCCTAAAATGAT
9039846 CAAATGTTTCTTCTGCAACTAGAATGGGCATTTAAAATCAAACTGTAAGTAATATTTGTGTTACC
66 CAAATGTTTCTTCTGCAACTAGAATGGGCATTTAAAATCAAACTGTAAGTAATATTTGTGTTACC
9039911 TAGCAAAAAAAGGCAAAGGTATGAAACTCTTTATGGTTGAAGCTTGCTTAGTGGAAGAATTAATT
131 TAGCAAAAAAAGGCAAAGGTATGAAACTCTTTATGGTTGAAGCTTGCTTAGTGGAAGAATTAATT
9039976 GACAACTAGGTTATTAATTCTAGAGCCACTAACCATGTTTATGTTTCTTTATAGGGTTTCAACAA
196 GACAACTAGGTTATTAATTCTAGAGCCACTAACCATGTTTATGTTTCTTTATAGGGTTTCAACAA
9040041 AAAAAAAAGTCTGCATGATAGCTGTCTCTAGTTGCTGACTGAAAATGGGAGCTATGTTTTAGCTG
261 AAAAAAAAGTCTGCATGATAGCTGTCTCTAGTTGCTGACTGAAAATGGGAGCTATGTTTTAGCTG
9040106 AAGCAGTGGCAGAAGTTATTTTACACTTTGATAATTTCTGGAATATTGTTTTAAAGAACGTGTTT
326 AAGCAGTGGCAGAAGTTATTTTACACTTTGATAATTTCTGGAATATTGTTTTAAAGAACGTGTTT
9040171 TGTGTACCTCATTTTAAGAGGAATTTAATTTCTATAGCATGTTTATTTTATGACAGTTATACCGT
391 TGTGTACCTCATTTTAAGAGGAATTTAATTTCTATAGCATGTTTATTTTATGACAGTTATACCGT
9040236 GACATTCAATAAAGGGATTGGTATTCAAATAAATTGTTCTTTAATTTGTAATTGATGGATCAAAA
456 GACATTCAATAAAGGGATTGGTATTCAAATAAATTGTTCTTTAATTTGTAATTGATGGATCAAAA
9040301 ATAATCTTTACTTTATCAAACCGAATAACTAATCGATGCTTGAAACTGAAATAGTGAATAAAAAG
521 ATAATCTTTACTTTATCAAACCGAATAACTAATCGATGCTTGAAACTGAAATAGTGAATAAAAAG
9040366 CTTAAAACTTCTTACTTTAATGAGGGTTACCTATGAAACTAAAGACTTGGTCATATTAACCAAGA
586 CTTAAAACTTCTTACTTTAATGAGGGTTACCTATGAAACTAAAGACTTGGTCATATTAACCAAGA
9040431 AAGA
651 AAGA
9040435 ATGCCTTCGGTTCTACCTCGTGTAGATAGGAAGAAGGCTAAGAAGTCAAAAGATCCTAAAATGAT
1 ATGCCTTCGGTTCTACCTCGTGTAGATAGGAAGAAGGCTAAGAAGTCAAAAGATCCTAAAATGAT
9040500 CAAATGTTTCTTCTGCAACTAGAATGGGCATTTAAAATCAAACTGTAAGTAATATTTGTGTTACC
66 CAAATGTTTCTTCTGCAACTAGAATGGGCATTTAAAATCAAACTGTAAGTAATATTTGTGTTACC
9040565 TAGCAAAAAAAGGCAAAGGTATGAAACTCTTTATGGTTGAAGCTTGCTTAGTGGAAGAATTAATT
131 TAGCAAAAAAAGGCAAAGGTATGAAACTCTTTATGGTTGAAGCTTGCTTAGTGGAAGAATTAATT
9040630 GACAACTAGGTTATTAATTCTAGAGCCACTAACCATGTTTATGTTTCTTTATAGGGTTTCAACAA
196 GACAACTAGGTTATTAATTCTAGAGCCACTAACCATGTTTATGTTTCTTTATAGGGTTTCAACAA
9040695 AAAAAAAAGTCTGCATGATAGCTGTCTCTAGTTGCTGACTGAAAATGGGAGCTATGTTTTAGCTG
261 AAAAAAAAGTCTGCATGATAGCTGTCTCTAGTTGCTGACTGAAAATGGGAGCTATGTTTTAGCTG
9040760 AAGCAGTGGCAGAAGTTATTTTACACTTTGATAATTTCTGGAATATTGTTTTAAAGAACGTGTTT
326 AAGCAGTGGCAGAAGTTATTTTACACTTTGATAATTTCTGGAATATTGTTTTAAAGAACGTGTTT
9040825 TGTGTACCTCATTTTAAGAGGAATTTAATTTCTATAGCATGTTTATTTTATGACAGTTATACCGT
391 TGTGTACCTCATTTTAAGAGGAATTTAATTTCTATAGCATGTTTATTTTATGACAGTTATACCGT
9040890 GACATTCAATAAAGGGATTGGTATTCAAATAAATTGTTCTTTAATTTGTAATTGATGGATCAAAA
456 GACATTCAATAAAGGGATTGGTATTCAAATAAATTGTTCTTTAATTTGTAATTGATGGATCAAAA
9040955 ATAATCTTTACTTTATCAAACCGAATAACTAATCGATGCTTGAAACTGAAATAGTGAATAAAAAG
521 ATAATCTTTACTTTATCAAACCGAATAACTAATCGATGCTTGAAACTGAAATAGTGAATAAAAAG
9041020 CTTAAAACTTCTTACTTTAATGAGGGTTACCTATGAAACTAAAGACTTGGTCATATTAACCAAGA
586 CTTAAAACTTCTTACTTTAATGAGGGTTACCTATGAAACTAAAGACTTGGTCATATTAACCAAGA
9041085 AAGA
651 AAGA
9041089 AT
1 AT
9041091 CACTAGACTT
Statistics
Matches: 656, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
654 656 1.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (654 bp):
ATGCCTTCGGTTCTACCTCGTGTAGATAGGAAGAAGGCTAAGAAGTCAAAAGATCCTAAAATGAT
CAAATGTTTCTTCTGCAACTAGAATGGGCATTTAAAATCAAACTGTAAGTAATATTTGTGTTACC
TAGCAAAAAAAGGCAAAGGTATGAAACTCTTTATGGTTGAAGCTTGCTTAGTGGAAGAATTAATT
GACAACTAGGTTATTAATTCTAGAGCCACTAACCATGTTTATGTTTCTTTATAGGGTTTCAACAA
AAAAAAAAGTCTGCATGATAGCTGTCTCTAGTTGCTGACTGAAAATGGGAGCTATGTTTTAGCTG
AAGCAGTGGCAGAAGTTATTTTACACTTTGATAATTTCTGGAATATTGTTTTAAAGAACGTGTTT
TGTGTACCTCATTTTAAGAGGAATTTAATTTCTATAGCATGTTTATTTTATGACAGTTATACCGT
GACATTCAATAAAGGGATTGGTATTCAAATAAATTGTTCTTTAATTTGTAATTGATGGATCAAAA
ATAATCTTTACTTTATCAAACCGAATAACTAATCGATGCTTGAAACTGAAATAGTGAATAAAAAG
CTTAAAACTTCTTACTTTAATGAGGGTTACCTATGAAACTAAAGACTTGGTCATATTAACCAAGA
AAGA
Found at i:9042889 original size:26 final size:26
Alignment explanation
Indices: 9042853--9042904 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
9042843 CAGTCGACTG
*
9042853 TATCAGGTTCTCATTTTTCTTAAGAT
1 TATCAAGTTCTCATTTTTCTTAAGAT
9042879 TATCAAGTTCTCATTTTTCTTAAGAT
1 TATCAAGTTCTCATTTTTCTTAAGAT
9042905 GACTGTCCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (26 bp):
TATCAAGTTCTCATTTTTCTTAAGAT
Found at i:9043695 original size:15 final size:15
Alignment explanation
Indices: 9043675--9043706 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9043665 CATTTCATTA
*
9043675 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
9043690 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
9043705 TT
1 TT
9043707 TGAATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:9051346 original size:22 final size:22
Alignment explanation
Indices: 9051321--9051362 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
9051311 AATTAAAGAA
9051321 ATGTAAAT-AAAATTAATTAAAT
1 ATGT-AATCAAAATTAATTAAAT
9051343 ATGTAATCAAAATTAATTAA
1 ATGTAATCAAAATTAATTAA
9051363 GTATAATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (22 bp):
ATGTAATCAAAATTAATTAAAT
Found at i:9068028 original size:23 final size:23
Alignment explanation
Indices: 9067979--9068038 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
9067969 AACTTTCACT
* * *
9067979 TATGGAAAGAAATAACAAAGATT
1 TATGGTAATAAATAACAAAGATA
* *
9068002 TATGGTAATAAATATCAAATATA
1 TATGGTAATAAATAACAAAGATA
*
9068025 TATGCTAATAAATA
1 TATGGTAATAAATA
9068039 CTAAAACTCC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (23 bp):
TATGGTAATAAATAACAAAGATA
Found at i:9069970 original size:15 final size:15
Alignment explanation
Indices: 9069952--9069993 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
9069942 GTATATCAAC
*
9069952 TCATAATATAAGGTT
1 TCATAATATAAAGTT
*
9069967 TCATAATCTAAAGTT
1 TCATAATATAAAGTT
*
9069982 TCA-AGTATAAAG
1 TCATAATATAAAG
9069994 AGTACTGATC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.36
Consensus pattern (15 bp):
TCATAATATAAAGTT
Found at i:9070077 original size:11 final size:12
Alignment explanation
Indices: 9070061--9070089 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9070051 AGTCAATAGC
9070061 AAAATACT-TTT
1 AAAATACTCTTT
9070072 AAAATACTCTTT
1 AAAATACTCTTT
9070084 AAAATA
1 AAAATA
9070090 TGCATACAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (12 bp):
AAAATACTCTTT
Found at i:9070771 original size:15 final size:15
Alignment explanation
Indices: 9070751--9070783 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
9070741 GTCTTATAAC
9070751 AAGTTAAATAACAAT
1 AAGTTAAATAACAAT
9070766 AAGTTAAATAACAAT
1 AAGTTAAATAACAAT
9070781 AAG
1 AAG
9070784 CACATACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.61, C:0.06, G:0.09, T:0.24
Consensus pattern (15 bp):
AAGTTAAATAACAAT
Found at i:9071021 original size:43 final size:44
Alignment explanation
Indices: 9070960--9071081 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 44
9070950 ACGAAGCCAT
* * *
9070960 CAATATTCGCAGACAAGCTGCCATGGAGGTTGTGGATAAACCAC
1 CAATATTTGCAGGCAAGCTGCCATGTAGGTTGTGGATAAACCAC
* * * * *
9071004 CAA-ATTTGCAGGCAAGCTACTATGTTGGTAGTGAATAAACCAC
1 CAATATTTGCAGGCAAGCTGCCATGTAGGTTGTGGATAAACCAC
* * * *
9071047 CAATTTTTGTAGGCAAGTTGGCATGTAGGTTGTGG
1 CAATATTTGCAGGCAAGCTGCCATGTAGGTTGTGG
9071082 GCGAAGCCAC
Statistics
Matches: 60, Mismatches: 17, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
43 35 0.58
44 25 0.42
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (44 bp):
CAATATTTGCAGGCAAGCTGCCATGTAGGTTGTGGATAAACCAC
Found at i:9073028 original size:17 final size:17
Alignment explanation
Indices: 9073006--9073040 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
9072996 TTTACATTCT
9073006 AGTTCGCCAAAGTAATA
1 AGTTCGCCAAAGTAATA
*
9073023 AGTTCGTCAAAGTAATA
1 AGTTCGCCAAAGTAATA
9073040 A
1 A
9073041 TCTCGCCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (17 bp):
AGTTCGCCAAAGTAATA
Found at i:9080975 original size:16 final size:17
Alignment explanation
Indices: 9080954--9080985 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
9080944 ATAAATTAAA
9080954 GTGAATAATT-ATGTTG
1 GTGAATAATTAATGTTG
9080970 GTGAATAATTAATGTT
1 GTGAATAATTAATGTT
9080986 TAAATTCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (17 bp):
GTGAATAATTAATGTTG
Found at i:9084373 original size:43 final size:41
Alignment explanation
Indices: 9084280--9084373 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 41
9084270 CATTGAATGT
* *
9084280 AAGGGGTTGCTAAGTGCAGATTCCCCGAATTATTGATTCTA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATTATA
* *
9084321 AAGGTGGTTGCTAAGTGCAGATTCCACCGTATCCTTGATTATGA
1 AAGG-GGTTGCTAAGTGCAGATTCC-CCGAATCATTGATTAT-A
9084365 AAGGGGTTG
1 AAGGGGTTG
9084374 TTATGAGTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
41 4 0.09
42 20 0.43
43 17 0.37
44 5 0.11
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATTATA
Found at i:9085808 original size:16 final size:17
Alignment explanation
Indices: 9085787--9085820 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9085777 TGATATGCAT
9085787 AAGAAA-GGGGATAGAA
1 AAGAAATGGGGATAGAA
*
9085803 AAGAAATGGGTATAGAA
1 AAGAAATGGGGATAGAA
9085820 A
1 A
9085821 GGTAATGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.32, T:0.12
Consensus pattern (17 bp):
AAGAAATGGGGATAGAA
Found at i:9098352 original size:25 final size:28
Alignment explanation
Indices: 9098294--9098352 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 28
9098284 TTTTACTTTC
*
9098294 AATCATTATTCAATTCAATTCCACACAT
1 AATCATTAATCAATTCAATTCCACACAT
*
9098322 -AT-ATTAATC-ATTCAA-T-CACACTT
1 AATCATTAATCAATTCAATTCCACACAT
9098345 AATCATTA
1 AATCATTA
9098353 CATGATCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
23 6 0.22
24 3 0.11
25 10 0.37
26 6 0.22
27 2 0.07
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (28 bp):
AATCATTAATCAATTCAATTCCACACAT
Found at i:9098507 original size:51 final size:51
Alignment explanation
Indices: 9098444--9098685 Score: 276
Period size: 50 Copynumber: 4.8 Consensus size: 51
9098434 CAGCATCCGA
* *
9098444 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTC-GG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCAAGCTATTCTGG
* * * * * *
9098495 TACGCATCGTAGCCTGCACATAGTACTACACATGCGACCTATC-ATTCTGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAGCTATTCTGG
* *
9098545 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTC-GG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCAAGCTATTCTGG
* * * * * *
9098596 TACGCATCGTAGCCTGCACATAGTACTACACATGCGACCTA-CCATTCTGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAGCTATTCTGG
* *
9098646 TACACGTAGTAGCCTGCACATCGTACTACACACGTGACCA
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCA
9098686 TCACTTTCAG
Statistics
Matches: 156, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
49 9 0.06
50 74 0.47
51 69 0.44
52 4 0.03
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAGCTATTCTGG
Found at i:9098619 original size:101 final size:101
Alignment explanation
Indices: 9098444--9098682 Score: 460
Period size: 101 Copynumber: 2.4 Consensus size: 101
9098434 CAGCATCCGA
9098444 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATCGTAGCC
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATCGTAGCC
*
9098509 TGCACATAGTACTACACATGCGACCTATCATTCTGG
66 TGCACATAGTACTACACATGCGACCTACCATTCTGG
9098545 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATCGTAGCC
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATCGTAGCC
9098610 TGCACATAGTACTACACATGCGACCTACCATTCTGG
66 TGCACATAGTACTACACATGCGACCTACCATTCTGG
*
9098646 TACACGTAGTAGCCTGCACATCGTACTACACACGTGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGA
9098683 CCATCACTTT
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 136 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (101 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCATCGTAGCC
TGCACATAGTACTACACATGCGACCTACCATTCTGG
Found at i:9098928 original size:16 final size:16
Alignment explanation
Indices: 9098907--9098937 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9098897 AATCCAATCC
9098907 AAAAATCACATTTTGG
1 AAAAATCACATTTTGG
*
9098923 AAAAATTACATTTTG
1 AAAAATCACATTTTG
9098938 CCCCTAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAATCACATTTTGG
Found at i:9101573 original size:20 final size:20
Alignment explanation
Indices: 9101545--9101591 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
9101535 TTATTTAAAT
*
9101545 TAATAAAATGCAAAGGAAAG
1 TAATGAAATGCAAAGGAAAG
*
9101565 TAATGAAATGCAAATGAAAG
1 TAATGAAATGCAAAGGAAAG
9101585 TAA-GAAA
1 TAATGAAA
9101592 ATTTGGAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.60, C:0.04, G:0.19, T:0.17
Consensus pattern (20 bp):
TAATGAAATGCAAAGGAAAG
Found at i:9105577 original size:4 final size:4
Alignment explanation
Indices: 9105568--9105609 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
9105558 TTGCATGTCA
* *
9105568 TTAT TTAT TTAT TTA- TTAT TTAT TTAT GTAT TCAT ATTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT TT
9105610 TTATACAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 3 0.09
4 26 0.81
5 3 0.09
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (4 bp):
TTAT
Found at i:9105585 original size:15 final size:15
Alignment explanation
Indices: 9105562--9105609 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 15
9105552 GATATTTTGC
9105562 ATGTCATTATTTATTT
1 ATGT-ATTATTTATTT
*
9105578 ATTTATTATTTATTT
1 ATGTATTATTTATTT
9105593 ATGTATTCATATTATTT
1 ATGTATT-AT-TTATTT
9105610 TTATACAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 17 0.61
16 5 0.18
17 6 0.21
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (15 bp):
ATGTATTATTTATTT
Found at i:9105588 original size:11 final size:11
Alignment explanation
Indices: 9105572--9105613 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
9105562 ATGTCATTAT
9105572 TTATTTATTTA
1 TTATTTATTTA
9105583 TTATTTATTTA
1 TTATTTATTTA
*
9105594 TGTATTCATATTA
1 T-TATTTAT-TTA
9105607 TT-TTTAT
1 TTATTTAT
9105614 ACAATTGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 16 0.59
12 7 0.26
13 4 0.15
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:9106751 original size:27 final size:27
Alignment explanation
Indices: 9106649--9106783 Score: 116
Period size: 27 Copynumber: 5.0 Consensus size: 27
9106639 AGGGGTATAA
*
9106649 CAGTCATTTTA-CCATAT-AGGGTATTT
1 CAGTAATTTTACCCAT-TGAGGGTATTT
** *
9106675 TGGTAATTTTTCCCATTGAGGGTATTT
1 CAGTAATTTTACCCATTGAGGGTATTT
* * * * * *
9106702 CGGTCATTGTA-TCTTTCGGGGGTATTT
1 CAGTAATTTTACCCATT-GAGGGTATTT
9106729 CAGTAATTTTACCCATTGAGGGTATTT
1 CAGTAATTTTACCCATTGAGGGTATTT
*
9106756 C-GATAATTTTACCCATCGAGGGTATTT
1 CAG-TAATTTTACCCATTGAGGGTATTT
9106783 C
1 C
9106784 GAACATTTAA
Statistics
Matches: 86, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
26 12 0.14
27 71 0.83
28 3 0.03
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (27 bp):
CAGTAATTTTACCCATTGAGGGTATTT
Found at i:9106779 original size:54 final size:54
Alignment explanation
Indices: 9106666--9106783 Score: 146
Period size: 54 Copynumber: 2.2 Consensus size: 54
9106656 TTTACCATAT
** * * * * **
9106666 AGGGTATTTTGGTAATTTTTCCCATTGAGGGTATTTCGGTCATTGTATCTTTCG
1 AGGGTATTTCAGTAATTTTACCCATTGAGGGTATTTCGATAATTGTACCCATCG
* *
9106720 GGGGTATTTCAGTAATTTTACCCATTGAGGGTATTTCGATAATTTTACCCATCG
1 AGGGTATTTCAGTAATTTTACCCATTGAGGGTATTTCGATAATTGTACCCATCG
9106774 AGGGTATTTC
1 AGGGTATTTC
9106784 GAACATTTAA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.42
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACCCATTGAGGGTATTTCGATAATTGTACCCATCG
Found at i:9106791 original size:27 final size:26
Alignment explanation
Indices: 9106721--9106796 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
9106711 TATCTTTCGG
* *
9106721 GGGTATTTCAGTAATTTTACCCATTGA
1 GGGTATTTC-GAAATTTTACCCATCGA
9106748 GGGTATTTCGATAATTTTACCCATCGA
1 GGGTATTTCGA-AATTTTACCCATCGA
*
9106775 GGGTATTTCGAACATTTAACCC
1 GGGTATTTCGAA-ATTTTACCC
9106797 TACGGGGGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.05
27 42 0.95
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (26 bp):
GGGTATTTCGAAATTTTACCCATCGA
Found at i:9106803 original size:81 final size:80
Alignment explanation
Indices: 9106640--9106805 Score: 183
Period size: 81 Copynumber: 2.1 Consensus size: 80
9106630 TCATCTCCTA
* * * * * *
9106640 GGGGTATAACAGTCATTTTACCATATAGGGTATTTTGGTAATTTTTCCCATTGAGGGTATTTCGG
1 GGGGTATAACAGTAATTTTACCATATAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGA
* * * *
9106705 TCATTGTATCTTTCG
66 ACATTGTACCCTACG
**
9106720 GGGGTATTTCAGTAATTTTACCCAT-TGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTC
1 GGGGTATAACAGTAATTTTA-CCATAT-AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTC
9106784 GAACATT-TAACCCTACG
64 GAACATTGT-ACCCTACG
9106801 GGGGT
1 GGGGT
9106806 CTTGGTATAG
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
80 19 0.27
81 52 0.73
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (80 bp):
GGGGTATAACAGTAATTTTACCATATAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGA
ACATTGTACCCTACG
Found at i:9108686 original size:40 final size:40
Alignment explanation
Indices: 9108642--9108781 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 40
9108632 AGCTCATATA
* *
9108642 GGGAGCTTTGCTGAAACAAAGCTTATCCATAAGCTTACAG
1 GGGAGCTTTGCTGATACAAAGCTTATCCATAAGCTCACAG
* * * *
9108682 GGGAGGTTTGCTGATACATAGCTTCATTACTTAAGCTCACATG
1 GGGAGCTTTGCTGATACAAAGCTT-A-TCCATAAGCTCACA-G
* * ** *
9108725 GGG-GATTTGTTGATACGCAGCTTACCCATAAGCTCACAG
1 GGGAGCTTTGCTGATACAAAGCTTATCCATAAGCTCACAG
9108764 GGGAGCTTTGCTGATACA
1 GGGAGCTTTGCTGATACA
9108782 CAACTTGTAA
Statistics
Matches: 80, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
39 4 0.05
40 43 0.54
41 2 0.03
42 27 0.34
43 4 0.05
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (40 bp):
GGGAGCTTTGCTGATACAAAGCTTATCCATAAGCTCACAG
Found at i:9114669 original size:15 final size:15
Alignment explanation
Indices: 9114649--9114678 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9114639 CCTATAGAAA
9114649 TTAAATAAAACTAAT
1 TTAAATAAAACTAAT
*
9114664 TTAAATAAAGCTAAT
1 TTAAATAAAACTAAT
9114679 GGAATTAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (15 bp):
TTAAATAAAACTAAT
Found at i:9117275 original size:50 final size:50
Alignment explanation
Indices: 9117166--9117462 Score: 254
Period size: 50 Copynumber: 5.8 Consensus size: 50
9117156 ATTTGGGTAA
* * *
9117166 AGAGATCCCATGTAATACCATGTATGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC-T-AGA-C--G
9117222 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGACG
* * * * *
9117272 AGAGGCCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGACG
*** * * * * * *
9117322 AGAGGTCCCCCATAAGACCATGTCTGGGACATGGAATGGGAACCAATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGACG
** * * * * * * *
9117372 AGAACTCCGATGTAAGACCATATCTAGGATATGGCATTGGCA-GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGACG
* ** * *
9117421 AAACATCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
9117463 TGTTATTATC
Statistics
Matches: 199, Mismatches: 42, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
49 37 0.19
50 116 0.58
52 1 0.01
53 3 0.02
54 1 0.01
55 2 0.01
56 39 0.20
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGACG
Found at i:9123766 original size:16 final size:16
Alignment explanation
Indices: 9123745--9123777 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9123735 CTTTCCCCCC
9123745 AATAAAAATTCATCCA
1 AATAAAAATTCATCCA
9123761 AATAAAAATTCATCCA
1 AATAAAAATTCATCCA
9123777 A
1 A
9123778 TTTTTTTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (16 bp):
AATAAAAATTCATCCA
Found at i:9124526 original size:3 final size:3
Alignment explanation
Indices: 9124518--9124552 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
9124508 GAATTCAACC
9124518 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9124553 AAGACGAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9125635 original size:3 final size:3
Alignment explanation
Indices: 9125627--9125699 Score: 137
Period size: 3 Copynumber: 24.3 Consensus size: 3
9125617 GCTTATGTGA
9125627 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
*
9125675 TTG TTG TTG TTG TTG TTG CTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
9125700 AGCTGTTGGT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.00, C:0.01, G:0.33, T:0.66
Consensus pattern (3 bp):
TTG
Found at i:9127095 original size:34 final size:34
Alignment explanation
Indices: 9127054--9127139 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 34
9127044 ACACGGTTAA
* *
9127054 CCATCCAGCACATCAGATGCTCATATGAGCTAAT
1 CCATCCAGCACACCAAATGCTCATATGAGCTAAT
*
9127088 CCATCCAGCACACCAAATGTTCATATGAGCTAAT
1 CCATCCAGCACACCAAATGCTCATATGAGCTAAT
9127122 CCATCCAGCACACCAAAT
1 CCATCCAGCACACCAAAT
9127140 AACACTGTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.35, C:0.33, G:0.12, T:0.21
Consensus pattern (34 bp):
CCATCCAGCACACCAAATGCTCATATGAGCTAAT
Found at i:9128088 original size:16 final size:16
Alignment explanation
Indices: 9128063--9128108 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
9128053 CACATTAAAA
9128063 TTACCA-AAAATTACT
1 TTACCATAAAATTACT
*
9128078 TTACCATAAAAACTACT
1 TTACCAT-AAAATTACT
9128095 TTA-CATTAAAATTA
1 TTACCA-TAAAATTA
9128109 ACAAACAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 6 0.23
16 8 0.31
17 12 0.46
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (16 bp):
TTACCATAAAATTACT
Found at i:9129740 original size:21 final size:21
Alignment explanation
Indices: 9129715--9129775 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
9129705 ATGGAGTAAC
9129715 TTGTTGATGAGTTGGGGCAG-
1 TTGTTGATGAGTTGGGGCAGA
*
9129735 TATGTTGATGAGTTGGGACAGA
1 T-TGTTGATGAGTTGGGGCAGA
* *
9129757 TTCTTGTTGAGTTGGGGCA
1 TTGTTGATGAGTTGGGGCA
9129776 AACACTTGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 1 0.03
21 33 0.94
22 1 0.03
ACGTcount: A:0.18, C:0.07, G:0.39, T:0.36
Consensus pattern (21 bp):
TTGTTGATGAGTTGGGGCAGA
Found at i:9130240 original size:25 final size:25
Alignment explanation
Indices: 9130206--9130256 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
9130196 CTTTTTAATG
9130206 AATGACAGCCATTGCATGCATGCTA
1 AATGACAGCCATTGCATGCATGCTA
9130231 AATGACAGCCATTGCATGCATGCTA
1 AATGACAGCCATTGCATGCATGCTA
9130256 A
1 A
9130257 GGATGCCAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (25 bp):
AATGACAGCCATTGCATGCATGCTA
Found at i:9135010 original size:33 final size:34
Alignment explanation
Indices: 9134969--9135034 Score: 82
Period size: 36 Copynumber: 1.9 Consensus size: 34
9134959 TAATAATTTT
9134969 ATTTATA-TT-TACTATTTATATTATTAAATTAA
1 ATTTATATTTGTACTATTTATATTATTAAATTAA
* *
9135001 ATTTCATATTTTGTACTTTTTATATTATTGAATT
1 ATTT-ATA-TTTGTACTATTTATATTATTAAATT
9135035 GTTTAATCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 4 0.14
33 3 0.11
35 2 0.07
36 19 0.68
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (34 bp):
ATTTATATTTGTACTATTTATATTATTAAATTAA
Found at i:9150232 original size:40 final size:42
Alignment explanation
Indices: 9150177--9150269 Score: 122
Period size: 40 Copynumber: 2.3 Consensus size: 42
9150167 AAATATATTT
9150177 ATTTTTTAAAATTTTAAAATA-TTTT-TTAGATACTT-TTTTA
1 ATTTTTTAAAATTTTAAAATACTTTTATTA-ATACTTGTTTTA
* **
9150217 ATTTTTTTAAATTTTAAAATACTTTTATTAATTTTTGTTTTA
1 ATTTTTTAAAATTTTAAAATACTTTTATTAATACTTGTTTTA
9150259 A-TTTTTAAAAT
1 ATTTTTTAAAAT
9150270 AATTTTTTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
40 20 0.43
41 17 0.37
42 9 0.20
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (42 bp):
ATTTTTTAAAATTTTAAAATACTTTTATTAATACTTGTTTTA
Found at i:9150258 original size:33 final size:29
Alignment explanation
Indices: 9150206--9150277 Score: 90
Period size: 33 Copynumber: 2.3 Consensus size: 29
9150196 TATTTTTTAG
9150206 ATACTTTTTTAATTTTTTTAAATTTTAAA
1 ATACTTTTTTAATTTTTTTAAATTTTAAA
*
9150235 ATACTTTTATTAATTTTTGTTTTAATTTTTAAA
1 ATACTTTT-TTAA--TTT-TTTTAAATTTTAAA
*
9150268 ATAATTTTTT
1 ATACTTTTTT
9150278 GGTATTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
29 8 0.22
30 4 0.11
32 5 0.14
33 20 0.54
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (29 bp):
ATACTTTTTTAATTTTTTTAAATTTTAAA
Found at i:9150264 original size:41 final size:39
Alignment explanation
Indices: 9150177--9150269 Score: 107
Period size: 41 Copynumber: 2.3 Consensus size: 39
9150167 AAATATATTT
9150177 ATTTTTTAAAATTTTAAAATATTTTTTAGATACTTTTTTA
1 ATTTTTT-AAATTTTAAAATATTTTTTAGATACTTTTTTA
**
9150217 ATTTTTTTAAATTTTAAAATACTTTTATTA-ATTTTTGTTTTA
1 A-TTTTTTAAATTTTAAAATA-TTTT-TTAGATACTT-TTTTA
*
9150259 ATTTTTAAAAT
1 ATTTTTTAAAT
9150270 AATTTTTTGG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
40 14 0.30
41 23 0.50
42 9 0.20
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (39 bp):
ATTTTTTAAATTTTAAAATATTTTTTAGATACTTTTTTA
Found at i:9150960 original size:13 final size:13
Alignment explanation
Indices: 9150942--9150968 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9150932 ATAAACCAAT
9150942 AAACTCCTAACAC
1 AAACTCCTAACAC
9150955 AAACTCCTAACAC
1 AAACTCCTAACAC
9150968 A
1 A
9150969 TCATATCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (13 bp):
AAACTCCTAACAC
Found at i:9152900 original size:82 final size:82
Alignment explanation
Indices: 9152814--9152978 Score: 224
Period size: 82 Copynumber: 2.0 Consensus size: 82
9152804 AACTATGTGA
* * ** * *
9152814 CAACTAAGGTACTTGTGGCATATTAACAATTTAAATTCCT-AGTATGAAATAAATCTAATTTCTC
1 CAACTAAGGTACTTATAGCATATTAACAATTTAAACCCCTCACT-TGAAATAAATCTAACTTCTC
9152878 ACCATTTAGACATTGACC
65 ACCATTTAGACATTGACC
* *
9152896 CAACTAAGGTACTTATAGCATATTAACAATTTAAACCCCTCACTTGAACTAAATCTAACTTCTTA
1 CAACTAAGGTACTTATAGCATATTAACAATTTAAACCCCTCACTTGAAATAAATCTAACTTCTCA
* *
9152961 TCATTTAGACTTTGACC
66 CCATTTAGACATTGACC
9152978 C
1 C
9152979 CATTTATTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
82 70 0.97
83 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (82 bp):
CAACTAAGGTACTTATAGCATATTAACAATTTAAACCCCTCACTTGAAATAAATCTAACTTCTCA
CCATTTAGACATTGACC
Found at i:9154734 original size:9 final size:9
Alignment explanation
Indices: 9154720--9154756 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
9154710 TATAGTTTGA
9154720 TATTCGAAT
1 TATTCGAAT
9154729 TATTCGAAT
1 TATTCGAAT
*
9154738 TATTCGAGT
1 TATTCGAAT
9154747 TATTCGAAT
1 TATTCGAAT
9154756 T
1 T
9154757 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:9154825 original size:9 final size:9
Alignment explanation
Indices: 9154808--9154838 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
9154798 TCGAGTTGAT
9154808 TCGAATAAC
1 TCGAATAAC
*
9154817 TCGATTAAC
1 TCGAATAAC
9154826 TCGAATAAC
1 TCGAATAAC
9154835 TCGA
1 TCGA
9154839 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:9155269 original size:17 final size:17
Alignment explanation
Indices: 9155247--9155284 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
9155237 TTGTAACTAT
9155247 CCATACCATCCACATAC
1 CCATACCATCCACATAC
9155264 CCATACCATCCACATAC
1 CCATACCATCCACATAC
9155281 CCAT
1 CCAT
9155285 GGTCACCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.47, G:0.00, T:0.18
Consensus pattern (17 bp):
CCATACCATCCACATAC
Found at i:9158759 original size:5 final size:5
Alignment explanation
Indices: 9158749--9158802 Score: 58
Period size: 5 Copynumber: 10.8 Consensus size: 5
9158739 AAATACTACA
* *
9158749 AAAAG AAAAG AAAAG AAAA- AGACAG AAAAG AAGAG AAAAG AAAA- AAAATG
1 AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG AAAAG AAAA-G
9158799 AAAA
1 AAAA
9158803 CCTAAACTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
4 5 0.12
5 31 0.76
6 5 0.12
ACGTcount: A:0.78, C:0.02, G:0.19, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:9158801 original size:25 final size:25
Alignment explanation
Indices: 9158749--9158802 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
9158739 AAATACTACA
*
9158749 AAAAGAAAAGAAAAGAAAAAGACAG
1 AAAAGAAAAGAAAAGAAAAAGAAAG
*
9158774 AAAAGAAGAGAAAAGAAAAA-AAATG
1 AAAAGAAAAGAAAAGAAAAAGAAA-G
9158799 AAAA
1 AAAA
9158803 CCTAAACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.78, C:0.02, G:0.19, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAGAAAAGAAAAAGAAAG
Found at i:9193135 original size:18 final size:18
Alignment explanation
Indices: 9193109--9193144 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9193099 ATTTTGTTGT
9193109 ACTAAAAAAATAAACTGA
1 ACTAAAAAAATAAACTGA
*
9193127 ACTAGAAAAATAAACTGA
1 ACTAAAAAAATAAACTGA
9193145 TTAGTACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.11, G:0.08, T:0.17
Consensus pattern (18 bp):
ACTAAAAAAATAAACTGA
Found at i:9201737 original size:41 final size:41
Alignment explanation
Indices: 9201674--9201778 Score: 147
Period size: 41 Copynumber: 2.6 Consensus size: 41
9201664 TAATTATTCA
* ** *
9201674 CTGACTTGCACATGTGTTCCCCTATTTGTACTTAGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
*
9201715 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
* *
9201756 TTGAATTGCACATACTTGCCCCT
1 CTGAATTGCACATACGTGCCCCT
9201779 GTTTACACTT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.34
Consensus pattern (41 bp):
CTGAATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
Found at i:9201789 original size:41 final size:41
Alignment explanation
Indices: 9201674--9201790 Score: 126
Period size: 41 Copynumber: 2.9 Consensus size: 41
9201664 TAATTATTCA
* ** * ** *
9201674 CTGACTTGCACATGTGTTCCCCTATTTGTACTTAGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTACACTTCGGTACCC
**
9201715 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTACACTTCGGTACCC
* * *
9201756 TTGAATTGCACATACTTGCCCCTGTTTACACTTCG
1 CTGAATTGCACATACGTGCCCCTATTTACACTTCG
9201791 ATAACTTTGA
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (41 bp):
CTGAATTGCACATACGTGCCCCTATTTACACTTCGGTACCC
Found at i:9201801 original size:41 final size:41
Alignment explanation
Indices: 9201716--9201802 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 41
9201706 TAGGTACCCC
** * *
9201716 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCT
1 TGAATTGCACATACGTGCCCCTATTTACACTTCGATAACCT
* * *
9201757 TGAATTGCACATACTTGCCCCTGTTTACACTTCGATAACTT
1 TGAATTGCACATACGTGCCCCTATTTACACTTCGATAACCT
9201798 TGAAT
1 TGAAT
9201803 CGAGTAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTATTTACACTTCGATAACCT
Found at i:9220786 original size:15 final size:15
Alignment explanation
Indices: 9220766--9220794 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9220756 CAAACATACT
9220766 TTAACACATATCAAA
1 TTAACACATATCAAA
9220781 TTAACACATATCAA
1 TTAACACATATCAA
9220795 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTAACACATATCAAA
Found at i:9226413 original size:7 final size:7
Alignment explanation
Indices: 9226401--9226425 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9226391 GAAAACCCTA
9226401 TACAATT
1 TACAATT
9226408 TACAATT
1 TACAATT
9226415 TACAATT
1 TACAATT
9226422 TACA
1 TACA
9226426 CCTAACCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (7 bp):
TACAATT
Found at i:9226921 original size:19 final size:20
Alignment explanation
Indices: 9226884--9226922 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9226874 TATATTTTGA
*
9226884 TTATTTTGTTTTTGGTATGT
1 TTATTTTGTTTTTGCTATGT
9226904 TTATTTTGTTTTT-CTATGT
1 TTATTTTGTTTTTGCTATGT
9226923 AAATCTACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTATTTTGTTTTTGCTATGT
Found at i:9230128 original size:20 final size:22
Alignment explanation
Indices: 9230098--9230138 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
9230088 CTGGCAATTG
9230098 GTAACTTTCATTTTTA-TTATT
1 GTAACTTTCATTTTTAGTTATT
9230119 GTAA-TTTCATTTTTAGTTAT
1 GTAACTTTCATTTTTAGTTAT
9230139 AATTTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.61
Consensus pattern (22 bp):
GTAACTTTCATTTTTAGTTATT
Found at i:9230327 original size:15 final size:15
Alignment explanation
Indices: 9230279--9230320 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
9230269 AACAAGCAAT
*
9230279 GAATCAAGAGGGTAA
1 GAATCAAGAGGGTCA
*
9230294 CAATCAAGAGGGTCA
1 GAATCAAGAGGGTCA
9230309 GAATCAATGAGG
1 GAATCAA-GAGG
9230321 TTAGAATGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.43, C:0.12, G:0.31, T:0.14
Consensus pattern (15 bp):
GAATCAAGAGGGTCA
Found at i:9231721 original size:25 final size:24
Alignment explanation
Indices: 9231693--9231766 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 24
9231683 TTAGGGTTAC
*
9231693 CGATTTATAGCTCATGA-GAGCATAT
1 CGATTTA-AGCTCA-AATGAGCATAT
9231718 CGATCTTCAA-CTCAAATGAGCATAT
1 CGAT-TT-AAGCTCAAATGAGCATAT
**
9231743 CGATTTACAGCTCGTATGAGCATA
1 CGATTTA-AGCTCAAATGAGCATA
9231767 CATGTACATG
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
23 1 0.02
24 4 0.10
25 32 0.78
26 3 0.07
27 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (24 bp):
CGATTTAAGCTCAAATGAGCATAT
Found at i:9244233 original size:96 final size:96
Alignment explanation
Indices: 9244069--9244262 Score: 363
Period size: 96 Copynumber: 2.0 Consensus size: 96
9244059 GAATAGTAGC
9244069 AAGGCACGACACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTATCGGGCTAT
1 AAGGCACGACACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTATCGGGCTAT
9244134 AACTATGCATTTCAAACACCGTGCATATCAA
66 AACTATGCATTTCAAACACCGTGCATATCAA
*
9244165 AAGGCAC-AGCACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTGTCGGGCTA
1 AAGGCACGA-CACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTATCGGGCTA
9244229 TAACTATGCATTTCAAACACCGTGCATATCAA
65 TAACTATGCATTTCAAACACCGTGCATATCAA
9244261 AA
1 AA
9244263 ATAGCATACA
Statistics
Matches: 96, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
95 1 0.01
96 95 0.99
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.26
Consensus pattern (96 bp):
AAGGCACGACACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTATCGGGCTAT
AACTATGCATTTCAAACACCGTGCATATCAA
Found at i:9252264 original size:46 final size:46
Alignment explanation
Indices: 9252197--9252289 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
9252187 ATCATGTTTT
9252197 TGATGAATGCCTATCCAATCTAGCCTCTGCATATTACATGGGGAAA
1 TGATGAATGCCTATCCAATCTAGCCTCTGCATATTACATGGGGAAA
*
9252243 TGATGAATGCCTATCCAATCTAGCCTCTGCGTATTACATGGGGAAA
1 TGATGAATGCCTATCCAATCTAGCCTCTGCATATTACATGGGGAAA
9252289 T
1 T
9252290 TTATTCGTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (46 bp):
TGATGAATGCCTATCCAATCTAGCCTCTGCATATTACATGGGGAAA
Found at i:9259904 original size:6 final size:6
Alignment explanation
Indices: 9259888--9259943 Score: 76
Period size: 6 Copynumber: 9.0 Consensus size: 6
9259878 AAATATAAAC
* *
9259888 AAATAA AAATTA AAATTTTA AAATTG AAATTA AAATTA AAATTA AAATTA
1 AAATTA AAATTA AAA--TTA AAATTA AAATTA AAATTA AAATTA AAATTA
9259938 AAATTA
1 AAATTA
9259944 TTTTCTGTCT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
6 39 0.87
8 6 0.13
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (6 bp):
AAATTA
Found at i:9268085 original size:41 final size:41
Alignment explanation
Indices: 9268022--9268126 Score: 138
Period size: 41 Copynumber: 2.6 Consensus size: 41
9268012 TAATTATTCA
* ** *
9268022 CTGACTTGCACATGTGTTCCCCTATTTGTACTTAGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
*
9268063 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
* * *
9268104 TTGAATTGTACATACTTGCCCCT
1 CTGAATTGCACATACGTGCCCCT
9268127 GTTTACACTT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (41 bp):
CTGAATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
Done.