Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 37 of 136
Found at i:12090815 original size:40 final size:41
Alignment explanation
Indices: 12090755--12090857 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 41
12090745 ATGCATAATA
12090755 AAATAAAATA-AAACATATAAATCTGAAAAAT-AAAATAAAAAC
1 AAATAAAATATAAA-A-ATAAATCT-AAAAATAAAAATAAAAAC
* ** ** *
12090797 AAATAACA-ATAAAAATAAAAGTACGAATAAAAATAAAAAT
1 AAATAAAATATAAAAATAAATCTAAAAATAAAAATAAAAAC
12090837 AAATAAAATATAAAAATAAAT
1 AAATAAAATATAAAAATAAAT
12090858 GAAATCACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
39 4 0.08
40 23 0.46
41 13 0.26
42 10 0.20
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (41 bp):
AAATAAAATATAAAAATAAATCTAAAAATAAAAATAAAAAC
Found at i:12090831 original size:24 final size:22
Alignment explanation
Indices: 12090780--12090856 Score: 86
Period size: 24 Copynumber: 3.4 Consensus size: 22
12090770 TATAAATCTG
12090780 AAAAAT-AAAATAAAAACAAAT
1 AAAAATAAAAATAAAAACAAAT
* *
12090801 AACAATAAAAATAAAAGTACGAAT
1 AAAAATAAAAATAAAA--ACAAAT
12090825 AAAAATAAAAATAAATAA-AATAT
1 AAAAATAAAAATAAA-AACAA-AT
12090848 AAAAATAAA
1 AAAAATAAA
12090857 TGAAATCACT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
21 5 0.11
22 10 0.21
23 12 0.26
24 19 0.40
25 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAAATAAAAATAAAAACAAAT
Found at i:12090851 original size:17 final size:16
Alignment explanation
Indices: 12090780--12090857 Score: 77
Period size: 16 Copynumber: 4.6 Consensus size: 16
12090770 TATAAATCTG
*
12090780 AAAAATAAAATAAAAAC
1 AAAAAT-AAATAAAAAT
*
12090797 AAATAA-CAATAAAAAT
1 AAA-AATAAATAAAAAT
*
12090813 AAAAGTACGAATAAAAAT
1 AAAAATA--AATAAAAAT
12090831 AAAAATAAATAAAATAT
1 AAAAATAAATAAAA-AT
12090848 AAAAATAAAT
1 AAAAATAAAT
12090858 GAAATCACTT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
15 1 0.02
16 18 0.35
17 15 0.29
18 17 0.33
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.18
Consensus pattern (16 bp):
AAAAATAAATAAAAAT
Found at i:12090857 original size:12 final size:11
Alignment explanation
Indices: 12090754--12090856 Score: 66
Period size: 12 Copynumber: 8.7 Consensus size: 11
12090744 AATGCATAAT
12090754 AAAATAAAATA
1 AAAATAAAATA
12090765 AAACATATAAATCTGA
1 AAA-ATA-AAA--T-A
12090781 AAAATAAAATA
1 AAAATAAAATA
*
12090792 AAAA-CAAATA
1 AAAATAAAATA
*
12090802 ACAATAAAAATA
1 AAAAT-AAAATA
* *
12090814 AAAGTACGAATA
1 AAAATA-AAATA
12090826 AAAATAAAAATA
1 AAAAT-AAAATA
*
12090838 AATAA-AATATA
1 AA-AATAAAATA
12090849 AAAATAAA
1 AAAATAAA
12090857 TGAAATCACT
Statistics
Matches: 71, Mismatches: 10, Indels: 22
0.69 0.10 0.21
Matches are distributed among these distances:
10 10 0.14
11 18 0.25
12 26 0.37
13 6 0.08
14 3 0.04
15 4 0.06
16 4 0.06
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:12090862 original size:17 final size:17
Alignment explanation
Indices: 12090804--12090862 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
12090794 AACAAATAAC
*
12090804 AATAAAA-ATAAAAGTA
1 AATAAAATATAAAAATA
12090820 CGAATAAAA-ATAAAAATA
1 --AATAAAATATAAAAATA
12090838 AATAAAATATAAAAATA
1 AATAAAATATAAAAATA
*
12090855 AATGAAAT
1 AATAAAAT
12090863 CACTTCTGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
16 7 0.18
17 16 0.42
18 15 0.39
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (17 bp):
AATAAAATATAAAAATA
Found at i:12091335 original size:21 final size:22
Alignment explanation
Indices: 12091311--12091353 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
12091301 TTTTCAAAAC
* *
12091311 GTTTTAGAT-TTTTTCCTTTTT
1 GTTTTAAATCTTTTTCATTTTT
12091332 GTTTTAAATCTTTTTCATTTTT
1 GTTTTAAATCTTTTTCATTTTT
12091354 TAAGTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.14, C:0.09, G:0.07, T:0.70
Consensus pattern (22 bp):
GTTTTAAATCTTTTTCATTTTT
Found at i:12094571 original size:33 final size:33
Alignment explanation
Indices: 12094529--12094618 Score: 135
Period size: 33 Copynumber: 2.7 Consensus size: 33
12094519 CTACCAAGAG
* *
12094529 AGTAAACACAAAATATAGTAGGTCCATAGGGAC
1 AGTAAACACAAAATAAAGTAAGTCCATAGGGAC
* * *
12094562 AGTAAACACATAATAGAGTAAGTCCATCGGGAC
1 AGTAAACACAAAATAAAGTAAGTCCATAGGGAC
12094595 AGTAAACACAAAATAAAGTAAGTC
1 AGTAAACACAAAATAAAGTAAGTC
12094619 TACTAGGCTA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.18
Consensus pattern (33 bp):
AGTAAACACAAAATAAAGTAAGTCCATAGGGAC
Found at i:12094632 original size:33 final size:32
Alignment explanation
Indices: 12094529--12094637 Score: 121
Period size: 33 Copynumber: 3.3 Consensus size: 32
12094519 CTACCAAGAG
* *
12094529 AGTAAACACAAAATATAGTAGGTCCATAGGGAC
1 AGTAAACACAAAATAAAGTAAGTCCATA-GGAC
* * *
12094562 AGTAAACACATAATAGAGTAAGTCCATCGGGAC
1 AGTAAACACAAAATAAAGTAAGTCCAT-AGGAC
*
12094595 AGTAAACACAAAATAAAGTAAGTCTACTAGG-C
1 AGTAAACACAAAATAAAGTAAGTCCA-TAGGAC
12094627 TAGTAAACACA
1 -AGTAAACACA
12094638 GAACAGAGAT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
32 1 0.02
33 63 0.97
34 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (32 bp):
AGTAAACACAAAATAAAGTAAGTCCATAGGAC
Found at i:12094632 original size:66 final size:66
Alignment explanation
Indices: 12094529--12094679 Score: 164
Period size: 66 Copynumber: 2.3 Consensus size: 66
12094519 CTACCAAGAG
* * * * *
12094529 AGTAAACACAAAATATAGTAGGTCCATAGGGACAGTAAACACATAATAGAG-TAAGTCCATCGGG
1 AGTAAACACAAAATAAAGTAAGTCCATAGGGACAGTAAACACAGAACAGAGAT-AGTACATCGGG
12094593 AC
65 AC
* *
12094595 AGTAAACACAAAATAAAGTAAGTCTACTA-GG-CTAGTAAACACAGAACAGAGATAGTACATTGG
1 AGTAAACACAAAATAAAGTAAGTCCA-TAGGGAC-AGTAAACACAGAACAGAGATAGTACATCGG
12094658 GAC
64 GAC
* * *
12094661 AATAAACACGAGATAAAGT
1 AGTAAACACAAAATAAAGT
12094680 CTATCGGGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
65 1 0.01
66 68 0.94
67 3 0.04
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (66 bp):
AGTAAACACAAAATAAAGTAAGTCCATAGGGACAGTAAACACAGAACAGAGATAGTACATCGGGA
C
Found at i:12096637 original size:21 final size:21
Alignment explanation
Indices: 12096611--12096655 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
12096601 TCTAAGATAG
12096611 TTCATTGGTAGATTCAAACTT
1 TTCATTGGTAGATTCAAACTT
12096632 TTCATTGGTAGATTCAAACTT
1 TTCATTGGTAGATTCAAACTT
12096653 TTC
1 TTC
12096656 TTTGATTAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (21 bp):
TTCATTGGTAGATTCAAACTT
Found at i:12097163 original size:3 final size:3
Alignment explanation
Indices: 12097155--12097185 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
12097145 ACGTAAGGAC
*
12097155 TTA TTA TTA TTA TTA TTA TTA TTA TTC TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
12097186 AATATGGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:12100951 original size:13 final size:13
Alignment explanation
Indices: 12100920--12100944 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12100910 GGTCACACGG
12100920 CCGTGTGGCCAAA
1 CCGTGTGGCCAAA
12100933 CCGTGTGGCCAA
1 CCGTGTGGCCAA
12100945 GCTGTGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (13 bp):
CCGTGTGGCCAAA
Found at i:12102046 original size:29 final size:29
Alignment explanation
Indices: 12101862--12102289 Score: 306
Period size: 29 Copynumber: 14.5 Consensus size: 29
12101852 TGATTGTTAT
* *
12101862 ACCATCCCTTTCCATAATTCGATAGCCGAA
1 ACCATCCCTTTTCAT-ATTCGATAGTCGAA
* * * *
12101892 GCTATCCATTTTCATGAATCGATAGTCG-A
1 ACCATCCCTTTTCAT-ATTCGATAGTCGAA
* * * * * * **
12101921 GCTATCCGTATTCATAATTTTGATGGTCGTC
1 ACCATCCCTTTTCAT-A-TTCGATAGTCGAA
* * **
12101952 ACCATCCCTTTTCATAATTTTGATGGTCGTC
1 ACCATCCCTTTTCAT-A-TTCGATAGTCGAA
* * **
12101983 ACCATCCCTTTTCATAATTTTGATGGTCGTC
1 ACCATCCCTTTTCAT-A-TTCGATAGTCGAA
*
12102014 ACCATCCCTTTTCATATTCGATGGTCGAA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
*
12102043 ACCATCCCTTTTCATATTCGATAGCCGAA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
* * * **
12102072 GCTATCCCTCTTT-ATATTCGATGGTCGTC
1 ACCATCCCT-TTTCATATTCGATAGTCGAA
* **
12102101 ACCATCCCTTTTCATAGTT-AAT-GTCGTC
1 ACCATCCCTTTTCATA-TTCGATAGTCGAA
* *
12102129 ACCATCCCTTTTCATAATCGATAGCCGAA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
* *
12102158 GCTATCCCTTTTCATATTCGATAGTCGAA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
***
12102187 GTTATCCCTTTTCATATTCGATAGTCGAA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
* * * **
12102216 GCTATCCCTTTTCATATTTGATAGTCGTC
1 ACCATCCCTTTTCATATTCGATAGTCGAA
* *
12102245 ACCATCCCTTTTCATTGTTCGATAGTTGAA
1 ACCATCCCTTTTCA-TATTCGATAGTCGAA
*
12102275 ACTATCCCTTTTCAT
1 ACCATCCCTTTTCAT
12102290 TAGTCGATGA
Statistics
Matches: 336, Mismatches: 54, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
27 1 0.00
28 27 0.08
29 177 0.53
30 58 0.17
31 73 0.22
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTCGATAGTCGAA
Found at i:12102150 original size:115 final size:116
Alignment explanation
Indices: 12101955--12102289 Score: 442
Period size: 115 Copynumber: 2.9 Consensus size: 116
12101945 GGTCGTCACC
* *
12101955 ATCCCTTTTCATAATTTTGATGGTCGTCACCATCCCTTTTCATAATTTTGATGGTCGTCACCATC
1 ATCCCTTTTCAT-A-TTCGATGGTCGTCACCATCCCTTTTCAT-A-TTTGATAGTCGTCACCATC
* *
12102020 CCTTTTCATATTCGATGGTCGAAACCATCCCTTTTCATATTCGATAGCCGAAGCT
62 CCTTTTCATATTCGATAGTCGAAACTATCCCTTTTCATATTCGATAGCCGAAGCT
* *
12102075 ATCCCTCTTT-ATATTCGATGGTCGTCACCATCCCTTTTCATAGTTAAT-GTCGTCACCATCCCT
1 ATCCCT-TTTCATATTCGATGGTCGTCACCATCCCTTTTCATATTTGATAGTCGTCACCATCCCT
* * * * *
12102138 TTTCATAATCGATAGCCGAAGCTATCCCTTTTCATATTCGATAGTCGAAGTT
65 TTTCATATTCGATAGTCGAAACTATCCCTTTTCATATTCGATAGCCGAAGCT
* * *
12102190 ATCCCTTTTCATATTCGATAGTCG-AAGCTATCCCTTTTCATATTTGATAGTCGTCACCATCCCT
1 ATCCCTTTTCATATTCGATGGTCGTCA-CCATCCCTTTTCATATTTGATAGTCGTCACCATCCCT
* *
12102254 TTTCATTGTTCGATAGTTGAAACTATCCCTTTTCAT
65 TTTCA-TATTCGATAGTCGAAACTATCCCTTTTCAT
12102290 TAGTCGATGA
Statistics
Matches: 190, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
114 4 0.02
115 97 0.51
116 24 0.13
117 26 0.14
118 27 0.14
119 1 0.01
120 8 0.04
121 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.13, T:0.39
Consensus pattern (116 bp):
ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATTTGATAGTCGTCACCATCCCTT
TTCATATTCGATAGTCGAAACTATCCCTTTTCATATTCGATAGCCGAAGCT
Found at i:12102155 original size:86 final size:87
Alignment explanation
Indices: 12101862--12102231 Score: 313
Period size: 86 Copynumber: 4.2 Consensus size: 87
12101852 TGATTGTTAT
* * * * *
12101862 ACCATCCCTTTCCATAATTCGATAGCCGAAGCTATCCATTTTCATGAATCGATAGTCG--AGCTA
1 ACCATCCCTTTTCATAA-TCGATAGCCGAAGCTATCCCTTTTCAT-ATTCGATGGTCGTCA-CCA
* * ** **
12101925 TCCGTATTCATAATTTTGATGGTCGTC
63 TCCCTTTTCAT-A-TTCAATGGTCGAA
* * * * * *
12101952 ACCATCCCTTTTCATAATTTTGATGGTCGTCA-CCATCCCTTTTCATAATTTTGATGGTCGTCAC
1 ACCATCCCTTTTCATAA--TCGATAGCCG-AAGCTATCCCTTTTCAT-A-TTCGATGGTCGTCAC
*
12102016 CATCCCTTTTCATATTCGATGGTCGAA
61 CATCCCTTTTCATATTCAATGGTCGAA
*
12102043 ACCATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTCTTT-ATATTCGATGGTCGTCACCATC
1 ACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCT-TTTCATATTCGATGGTCGTCACCATC
**
12102107 CCTTTTCATAGTT-AAT-GTCGTC
65 CCTTTTCATA-TTCAATGGTCGAA
* * **
12102129 ACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATATTCGATAGTCG-AAGTTATC
1 ACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATATTCGATGGTCGTCA-CCATC
* *
12102193 CCTTTTCATATTCGATAGTCGAA
65 CCTTTTCATATTCAATGGTCGAA
* *
12102216 GCTATCCCTTTTCATA
1 ACCATCCCTTTTCATA
12102232 TTTGATAGTC
Statistics
Matches: 231, Mismatches: 37, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
85 6 0.03
86 69 0.30
87 48 0.21
88 4 0.02
89 16 0.07
90 19 0.08
91 47 0.20
92 10 0.04
93 11 0.05
94 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.37
Consensus pattern (87 bp):
ACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATATTCGATGGTCGTCACCATCC
CTTTTCATATTCAATGGTCGAA
Found at i:12120947 original size:62 final size:64
Alignment explanation
Indices: 12120863--12120984 Score: 167
Period size: 66 Copynumber: 1.9 Consensus size: 64
12120853 AATTTTAATA
* * *
12120863 TTAAATTTAATTTATTACTTATC-AAAAT-AGTATTTTATTAATTTAATATTAAAGTGATTATC
1 TTAAATTAAATTTAATACTTATCTAAAATAAATATTTTATTAATTTAATATTAAAGTGATTATC
* *
12120925 TTAAATTAAATTTAATATTTATCTTTGAAATAAATATTTTATTAATTTAATATTAAAGTG
1 TTAAATTAAATTTAATACTTATC--TAAAATAAATATTTTATTAATTTAATATTAAAGTG
12120985 TGTGTTAGGT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
62 20 0.39
65 4 0.08
66 27 0.53
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (64 bp):
TTAAATTAAATTTAATACTTATCTAAAATAAATATTTTATTAATTTAATATTAAAGTGATTATC
Found at i:12130355 original size:129 final size:133
Alignment explanation
Indices: 12130221--12130531 Score: 459
Period size: 129 Copynumber: 2.4 Consensus size: 133
12130211 AAAGGTGATC
* * * *
12130221 TTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGATCATGACTTTTAACAGCGCTTTTCCCTCAA
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCATGACTTTTAACAGCGCCTTTCCCACAA
** *
12130286 ATGACGCTATAGATCATGACTTTTAGCGGTGCTTTTTCCACAAATGCCGC-T-AT-A-GATCATG
66 ATGACGCTATAGATCATGACTTTTAGCGACGCTTTTTCCACAAACGCCGCATAATCATGATCATG
12130347 ACT
131 ACT
* * *
12130350 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACTTTTAGCAGTGCCTTTCCCACAA
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCATGACTTTTAACAGCGCCTTTCCCACAA
*
12130415 ATGCCGCTATAGATCATGACTTTTAGCGACGCTTTTTCCACAAACGCCGCTATAGATCATGATCA
66 ATGACGCTATAGATCATGACTTTTAGCGACGCTTTTTCCACAAACGCCGC-ATA-ATCATGATCA
12130480 TGACT
129 TGACT
* *
12130485 TTTAGCGGTGCCTTTCCCACAAACGCCGCTATAGATCATGACTTTTA
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCATGACTTTTA
12130532 GCGACGCTTT
Statistics
Matches: 162, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
129 104 0.64
131 1 0.01
133 2 0.01
134 1 0.01
135 54 0.33
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (133 bp):
TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCATGACTTTTAACAGCGCCTTTCCCACAA
ATGACGCTATAGATCATGACTTTTAGCGACGCTTTTTCCACAAACGCCGCATAATCATGATCATG
ACT
Found at i:12130556 original size:43 final size:43
Alignment explanation
Indices: 12130221--12130586 Score: 408
Period size: 43 Copynumber: 8.4 Consensus size: 43
12130211 AAAGGTGATC
* * *
12130221 TTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGATCATGACT
1 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
* * * * * *
12130264 TTTAACAGCGCTTTTCCCTCAAATGACGCTATAGATCATGACT
1 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
* *
12130307 TTTAGCGGTGCTTTTTCCACAAATGCCGCTATAGATCATGACT
1 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
12130350 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
1 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
* * * * *
12130393 TTTAGCAGTGCCTTTCCCACAAATGCCGCTATAGATCATGACT
1 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
*
12130436 TTTAGCGACGCTTTTTCCACAAACGCCGCTATAGATCATGATCATGACT
1 TTTAGCGGCGCTTTTTCCACAAACGCCGC--T--AT-A-GATCATGACT
* * *
12130485 TTTAGCGGTGCCTTTCCCACAAACGCCGCTATAGATCATGACT
1 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
* ** * * * * * *
12130528 TTTAGCGACGCTTTTTTTATAAAAGCCGCTAAAGAACACGACC
1 TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
*
12130571 TTTAGCGGCGTTTTTT
1 TTTAGCGGCGCTTTTT
12130587 TAAAAAACGC
Statistics
Matches: 273, Mismatches: 44, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
43 230 0.84
44 1 0.00
45 3 0.01
47 3 0.01
48 1 0.00
49 35 0.13
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
Found at i:12130987 original size:16 final size:16
Alignment explanation
Indices: 12130944--12131065 Score: 62
Period size: 16 Copynumber: 7.9 Consensus size: 16
12130934 TATTAAGTAA
12130944 ATTATGTAAG-T-TGT
1 ATTATGTAAGTTATGT
* * *
12130958 CTTATATAAATTATGT
1 ATTATGTAAGTTATGT
12130974 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
* *
12130990 A-TATATCA--TA-GT
1 ATTATGTAAGTTATGT
* **
12131002 ATTCTGTATTTTATGT
1 ATTATGTAAGTTATGT
*
12131018 AAGTTATGT--CTTATGT
1 -A-TTATGTAAGTTATGT
*
12131034 AGGCTATGTAAGTTATGT
1 A--TTATGTAAGTTATGT
12131052 ATTATGTAAGTTAT
1 ATTATGTAAGTTAT
12131066 ATAAATATTT
Statistics
Matches: 80, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
12 3 0.04
13 5 0.06
14 7 0.09
15 9 0.11
16 43 0.54
17 1 0.01
18 12 0.15
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.49
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:12131024 original size:9 final size:9
Alignment explanation
Indices: 12131012--12131152 Score: 55
Period size: 9 Copynumber: 16.2 Consensus size: 9
12131002 ATTCTGTATT
12131012 TTATGTAAG
1 TTATGTAAG
*
12131021 TTATGT--C
1 TTATGTAAG
*
12131028 TTATGTAGG
1 TTATGTAAG
*
12131037 CTATGTAAG
1 TTATGTAAG
12131046 TTATGT-A-
1 TTATGTAAG
12131053 TTATGTAAG
1 TTATGTAAG
* *
12131062 TTATATAAA
1 TTATGTAAG
* **
12131071 TATTTGT-TT
1 T-TATGTAAG
*
12131080 TTGTGT-A-
1 TTATGTAAG
*
12131087 TTATGTAAC
1 TTATGTAAG
* *
12131096 TTATATAAT
1 TTATGTAAG
* *
12131105 TTATATAGG
1 TTATGTAAG
12131114 TTATGTATTA-
1 TTATGTA--AG
12131124 TTATGTAAG
1 TTATGTAAG
**
12131133 TTATGTTGG
1 TTATGTAAG
12131142 TTATGTAAG
1 TTATGTAAG
12131151 TT
1 TT
12131153 GTAATATGAT
Statistics
Matches: 98, Mismatches: 24, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
7 17 0.17
8 8 0.08
9 63 0.64
10 10 0.10
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (9 bp):
TTATGTAAG
Found at i:12131251 original size:23 final size:23
Alignment explanation
Indices: 12131223--12131266 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
12131213 AAATTATGTA
12131223 TTATGTAAGTTTATGT-ATGTAGG
1 TTATGTAAG-TTATGTAATGTAGG
12131246 TTATGTAAGTTATGTAATGTA
1 TTATGTAAGTTATGTAATGTA
12131267 TCAATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.48
Consensus pattern (23 bp):
TTATGTAAGTTATGTAATGTAGG
Found at i:12131306 original size:21 final size:20
Alignment explanation
Indices: 12131269--12131309 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
12131259 GTAATGTATC
*
12131269 AATTTTTAAAAATATATATA
1 AATTTTAAAAAATATATATA
12131289 AATTTTAAAAATATATATATA
1 AATTTTAAAAA-ATATATATA
12131310 TTAAATCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTTTAAAAAATATATATA
Found at i:12131313 original size:17 final size:18
Alignment explanation
Indices: 12131274--12131314 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
12131264 GTATCAATTT
*
12131274 TTAAAAATATATATAAATT
1 TTAAAAATATATAT-AATA
12131293 TTAAAAATATATAT-ATA
1 TTAAAAATATATATAATA
12131310 TTAAA
1 TTAAA
12131315 TCTTAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
19 14 0.67
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TTAAAAATATATATAATA
Found at i:12131320 original size:24 final size:23
Alignment explanation
Indices: 12131280--12131330 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
12131270 ATTTTTAAAA
*
12131280 ATATATATAAATTTTAAAAATAT
1 ATATATATAAATCTTAAAAATAT
*
12131303 ATATATATTAAATCTTAAATATAT
1 ATATATA-TAAATCTTAAAAATAT
12131327 ATAT
1 ATAT
12131331 TAATAAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATATATATAAATCTTAAAAATAT
Found at i:12132142 original size:49 final size:49
Alignment explanation
Indices: 12132085--12132182 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
12132075 CAAAATATTA
12132085 AATTTGATTCATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATT
1 AATTTGATTCATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATT
12132134 AATTTGATTCATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATT
1 AATTTGATTCATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATT
12132183 CTTTTACAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (49 bp):
AATTTGATTCATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATT
Found at i:12132198 original size:49 final size:49
Alignment explanation
Indices: 12132095--12132195 Score: 150
Period size: 49 Copynumber: 2.1 Consensus size: 49
12132085 AATTTGATTC
***
12132095 ATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATTAATTTGATTC
1 ATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATTAATTTGACAA
* *
12132144 ATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATT-CTTTTACAA
1 ATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATTAATTTGACAA
12132192 ATTT
1 ATTT
12132196 TGAACAGTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 8 0.17
49 39 0.83
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36
Consensus pattern (49 bp):
ATTTGACACTAGCCTAAATTTAGGATCTAAGCAACCATTAATTTGACAA
Found at i:12132529 original size:21 final size:21
Alignment explanation
Indices: 12132503--12132545 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
12132493 AGGTTAAGAC
12132503 ATATATAAATCTTCATTGAAT
1 ATATATAAATCTTCATTGAAT
*
12132524 ATATATATATCTTCATTGAAT
1 ATATATAAATCTTCATTGAAT
12132545 A
1 A
12132546 ACATGTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (21 bp):
ATATATAAATCTTCATTGAAT
Found at i:12133375 original size:14 final size:14
Alignment explanation
Indices: 12133356--12133388 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
12133346 AAGTTACAGT
12133356 TCCTACACTTTGAC
1 TCCTACACTTTGAC
12133370 TCCTACACTTTGAC
1 TCCTACACTTTGAC
12133384 TCCTA
1 TCCTA
12133389 TCCAGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (14 bp):
TCCTACACTTTGAC
Found at i:12133660 original size:28 final size:28
Alignment explanation
Indices: 12133620--12133677 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
12133610 GTGATTGAAG
*
12133620 TTGGTATCTAAACCCTAAATTCCCAAAT
1 TTGGTATCTAAACCCCAAATTCCCAAAT
*
12133648 TTGGTATCTAAACCCCAGATTCCCAAAT
1 TTGGTATCTAAACCCCAAATTCCCAAAT
12133676 TT
1 TT
12133678 CACTAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (28 bp):
TTGGTATCTAAACCCCAAATTCCCAAAT
Found at i:12133843 original size:14 final size:13
Alignment explanation
Indices: 12133825--12133849 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12133815 TCCTCTTCTT
12133825 TTTTTTCTTTGTA
1 TTTTTTCTTTGTA
12133838 TTTTTTCTTTGT
1 TTTTTTCTTTGT
12133850 TTCTGATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.08, G:0.08, T:0.80
Consensus pattern (13 bp):
TTTTTTCTTTGTA
Found at i:12133892 original size:18 final size:20
Alignment explanation
Indices: 12133857--12133899 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
12133847 TGTTTCTGAT
12133857 TTCTGATTTCCTCCTTTG-C
1 TTCTGATTTCCTCCTTTGCC
**
12133876 TTCTG-TTTCCTTTTTTGCC
1 TTCTGATTTCCTCCTTTGCC
12133895 TTCTG
1 TTCTG
12133900 GGATTCTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.02, C:0.28, G:0.12, T:0.58
Consensus pattern (20 bp):
TTCTGATTTCCTCCTTTGCC
Found at i:12141956 original size:2 final size:2
Alignment explanation
Indices: 12141949--12141982 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
12141939 TTGAAAACTA
12141949 AG AG AG AG AG AG AG AG AG AG AG AG -G AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
12141983 TGTCATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:12142191 original size:17 final size:18
Alignment explanation
Indices: 12142169--12142205 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
12142159 AAGTTTTATA
*
12142169 ATTTTTAGTATAT-TTTT
1 ATTTTTAATATATATTTT
12142186 ATTTTTAATATATATTTT
1 ATTTTTAATATATATTTT
12142204 AT
1 AT
12142206 AATTTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
ATTTTTAATATATATTTT
Found at i:12151748 original size:19 final size:18
Alignment explanation
Indices: 12151713--12151755 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
12151703 AAAAGTTAGA
12151713 AAATAT-TTAAAAAATTT
1 AAATATATTAAAAAATTT
*
12151730 AAATATATTAAATATATTT
1 AAATATATTAAA-AAATTT
*
12151749 ATATATA
1 AAATATA
12151756 AATGGAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 5 0.23
19 11 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATATATTAAAAAATTT
Found at i:12151999 original size:39 final size:39
Alignment explanation
Indices: 12151955--12152033 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
12151945 AAATTTGGAC
12151955 TTTCTTTTGTTGTTTTTTTCTCTGCTATAAGCTTGAGTG
1 TTTCTTTTGTTGTTTTTTTCTCTGCTATAAGCTTGAGTG
12151994 TTTCTTTTGTTGTTTTTTTCTCTGCTATAAGCTTGAGTG
1 TTTCTTTTGTTGTTTTTTTCTCTGCTATAAGCTTGAGTG
12152033 T
1 T
12152034 AAAAAGTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.10, C:0.13, G:0.18, T:0.59
Consensus pattern (39 bp):
TTTCTTTTGTTGTTTTTTTCTCTGCTATAAGCTTGAGTG
Found at i:12161613 original size:26 final size:26
Alignment explanation
Indices: 12161584--12161914 Score: 216
Period size: 26 Copynumber: 12.1 Consensus size: 26
12161574 CACCAAGACA
* * *
12161584 ATCTTATATGGAAGTCCATAAGGACT
1 ATCTTATGTGGAAGTCCGTGAGGACT
*
12161610 ATCTGATATGTGGAAAGTTCGCT-AGGACT
1 ATCT--TATGTGG-AAGTCCG-TGAGGACT
* * *
12161639 ATCTTATGTGGAAGTCTGTGTGGGCT
1 ATCTTATGTGGAAGTCCGTGAGGACT
*** *
12161665 ATCTGATATG-GAGAAAGTCCACCATGACT
1 ATCT--TATGTG-G-AAGTCCGTGAGGACT
* * *
12161694 ATCTTATATGAAAGTCCATGAGGACT
1 ATCTTATGTGGAAGTCCGTGAGGACT
* * *
12161720 ACCTGATATGTGGAAAGTCGGTCAGGACT
1 ATCT--TATGTGG-AAGTCCGTGAGGACT
*
12161749 ATCTTATGTGGAAGTCCGTAAGGACT
1 ATCTTATGTGGAAGTCCGTGAGGACT
* ** *
12161775 ATCTGATATGAGGAAAGTCCGCCAAGACT
1 ATCT--TATGTGG-AAGTCCGTGAGGACT
12161804 ATCTTATGTGGAAGTCCGTGAGGACT
1 ATCTTATGTGGAAGTCCGTGAGGACT
* * *
12161830 ATCTGGTATGGGGAATTCCGTTAGGACT
1 ATCT--TATGTGGAAGTCCGTGAGGACT
*
12161858 ATCTTATGTGGAAGTCTGTGAGGACT
1 ATCTTATGTGGAAGTCCGTGAGGACT
* * * *
12161884 ATTTGGTATGGGGAAGTCCATCAGGACT
1 ATCT--TATGTGGAAGTCCGTGAGGACT
12161912 ATC
1 ATC
12161915 CTTGTGAGGA
Statistics
Matches: 236, Mismatches: 49, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
25 1 0.00
26 86 0.36
27 24 0.10
28 66 0.28
29 58 0.25
30 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
ATCTTATGTGGAAGTCCGTGAGGACT
Found at i:12161621 original size:55 final size:55
Alignment explanation
Indices: 12161562--12161902 Score: 364
Period size: 55 Copynumber: 6.2 Consensus size: 55
12161552 ACATTCTTAA
* * * * *
12161562 ATGTGGAAAGTCCACCAAGACAATCTTATATGGAAGTCCATAAGGACTATCTGAT
1 ATGTGGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * * * * *
12161617 ATGTGGAAAGTTCGCTAGGACTATCTTATGTGGAAGTCTGTGTGGGCTATCTGAT
1 ATGTGGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * * * * *
12161672 ATG-GAGAAAGTCCACCATGACTATCTTATATGAAAGTCCATGAGGACTACCTGAT
1 ATGTG-GAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * * *
12161727 ATGTGGAAAGTCGGTCAGGACTATCTTATGTGGAAGTCCGTAAGGACTATCTGAT
1 ATGTGGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* *
12161782 ATGAGGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGGT
1 ATGTGGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * ** * * * *
12161837 ATG-GGGAATTCCGTTAGGACTATCTTATGTGGAAGTCTGTGAGGACTATTTGGT
1 ATGTGGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
*
12161891 ATG-GGGAAGTCC
1 ATGTGGAAAGTCC
12161903 ATCAGGACTA
Statistics
Matches: 239, Mismatches: 45, Indels: 5
0.83 0.16 0.02
Matches are distributed among these distances:
54 56 0.23
55 182 0.76
56 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (55 bp):
ATGTGGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
Found at i:12161698 original size:110 final size:110
Alignment explanation
Indices: 12161567--12161914 Score: 445
Period size: 110 Copynumber: 3.2 Consensus size: 110
12161557 CTTAAATGTG
* *
12161567 GAAAGTCCACCAAGACAATCTTATATGGAAGTCCATAAGGACTATCTGATATGTGGAAAGTTCGC
1 GAAAGTCCACCAAGACTATCTTATATGGAAGTCCATGAGGACTATCTGATATGTGGAAAGTTCGC
* *
12161632 TAGGACTATCTTATGTGGAAGTCTGTGTGGGCTATCTGATATGGA
66 TAGGACTATCTTATGTGGAAGTCTGTGAGGACTATCTGATATGGA
* * * *
12161677 GAAAGTCCACCATGACTATCTTATATGAAAGTCCATGAGGACTACCTGATATGTGGAAAG-TCGG
1 GAAAGTCCACCAAGACTATCTTATATGGAAGTCCATGAGGACTATCTGATATGTGGAAAGTTCGC
* *
12161741 TCAGGACTATCTTATGTGGAAGTCCGTAAGGACTATCTGATAT-GA
66 T-AGGACTATCTTATGTGGAAGTCTGTGAGGACTATCTGATATGGA
* * * * *
12161786 GGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGGTATG-GGGAA-TTCC
1 -GAAAGTCCACCAAGACTATCTTATATGGAAGTCCATGAGGACTATCTGATATGTGGAAAGTT-C
* * *
12161849 GTTAGGACTATCTTATGTGGAAGTCTGTGAGGACTATTTGGTATGG-
64 GCTAGGACTATCTTATGTGGAAGTCTGTGAGGACTATCTGATATGGA
* * *
12161895 GGAAGTCCATCAGGACTATC
1 GAAAGTCCACCAAGACTATC
12161915 CTTGTGAGGA
Statistics
Matches: 206, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
108 16 0.08
109 48 0.23
110 142 0.69
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (110 bp):
GAAAGTCCACCAAGACTATCTTATATGGAAGTCCATGAGGACTATCTGATATGTGGAAAGTTCGC
TAGGACTATCTTATGTGGAAGTCTGTGAGGACTATCTGATATGGA
Found at i:12163948 original size:41 final size:41
Alignment explanation
Indices: 12163891--12164010 Score: 144
Period size: 41 Copynumber: 3.0 Consensus size: 41
12163881 TTGACTTAAT
12163891 TTATTTAAATGATTTAAATACATATAAACATGATTCTAAAA
1 TTATTTAAATGATTTAAATACATATAAACATGATTCTAAAA
* * *
12163932 TTATTTAAATGATTTAAATTAGC--AT-AA-TTGA--CTTAAT
1 TTATTTAAATGATTTAAA-TA-CATATAAACATGATTCTAAAA
*
12163969 TTATTTAAATGATTTAAATACATATAAACATGGTTCTAAAA
1 TTATTTAAATGATTTAAATACATATAAACATGATTCTAAAA
12164010 T
1 T
12164011 GTGCTAGGGA
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
35 1 0.02
36 2 0.03
37 24 0.38
38 2 0.03
39 5 0.08
40 2 0.03
41 25 0.39
42 2 0.03
43 1 0.02
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.42
Consensus pattern (41 bp):
TTATTTAAATGATTTAAATACATATAAACATGATTCTAAAA
Found at i:12163982 original size:37 final size:37
Alignment explanation
Indices: 12163869--12163987 Score: 143
Period size: 37 Copynumber: 3.1 Consensus size: 37
12163859 TCTTTTAGCC
12163869 AAATTAGCATAATTGACTTAATTTATTTAAATGATTT
1 AAATTAGCATAATTGACTTAATTTATTTAAATGATTT
* * *
12163906 AAA-TA-CATATAAACATGATTCTAAAATTATTTAAATGATTT
1 AAATTAGC--AT-AA-TTGA--CTTAATTTATTTAAATGATTT
12163947 AAATTAGCATAATTGACTTAATTTATTTAAATGATTT
1 AAATTAGCATAATTGACTTAATTTATTTAAATGATTT
12163984 AAAT
1 AAAT
12163988 ACATATAAAC
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
35 1 0.01
36 2 0.03
37 28 0.41
38 2 0.03
39 6 0.09
40 2 0.03
41 24 0.35
42 2 0.03
43 1 0.01
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.43
Consensus pattern (37 bp):
AAATTAGCATAATTGACTTAATTTATTTAAATGATTT
Found at i:12165150 original size:236 final size:236
Alignment explanation
Indices: 12164737--12165444 Score: 1389
Period size: 236 Copynumber: 3.0 Consensus size: 236
12164727 CAATCCATAA
*
12164737 TCAAAGGTACCAGGTAAGAATACATATGAATAATAGACTCATGGCTGCATTTTCATTCAACACTT
1 TCAAAGGTACCAGGTAAGAATACATATGAATAATATACTCATGGCTGCATTTTCATTCAACACTT
*
12164802 CTTCATCTGAACAAATACGACCTAACATCCATCCTAGTAGGAAGTGGGACTCACTGAGTGTGAGT
66 CTTCATCTGAACAAATACGACCTAAAATCCATCCTAGTAGGAAGTGGGACTCACTGAGTGTGAGT
12164867 CGATAACTCATCACCTTGATGCAAGAATCGAATTGTTGGGGGTGAGTGGAAGCTTGTTTTCCATG
131 CGATAACTCATCACCTTGATGCAAGAATCGAATTGTTGGGGGTGAGTGGAAGCTTGTTTTCCATG
12164932 GGAGTCAATGGTAGTGTGCTCAAAGGGAGATGATTTGTTAC
196 GGAGTCAATGGTAGTGTGCTCAAAGGGAGATGATTTGTTAC
12164973 TCAAAGGTACCAGGTAAGAATACATATGAATAATATACTCATGGCTGCATTTTCATTCAACACTT
1 TCAAAGGTACCAGGTAAGAATACATATGAATAATATACTCATGGCTGCATTTTCATTCAACACTT
12165038 CTTCATCTGAACAAATACGACCTAAAATCCATCCTAGTAGGAAGTGGGACTCACTGAGTGTGAGT
66 CTTCATCTGAACAAATACGACCTAAAATCCATCCTAGTAGGAAGTGGGACTCACTGAGTGTGAGT
12165103 CGATAACTCATCACCTTGATGCAAGAATCGAATTGTTGGGGGTGAGTGGAAGCTTGTTTTCCATG
131 CGATAACTCATCACCTTGATGCAAGAATCGAATTGTTGGGGGTGAGTGGAAGCTTGTTTTCCATG
12165168 GGAGTCAATGGTAGTGTGCTCAAAGGGAGATGATTTGTTAC
196 GGAGTCAATGGTAGTGTGCTCAAAGGGAGATGATTTGTTAC
12165209 TCAAAGGTACCAGGTAAGAATACATATGAATAATATACTCATGGCTGCATTTTCATTCAACACTT
1 TCAAAGGTACCAGGTAAGAATACATATGAATAATATACTCATGGCTGCATTTTCATTCAACACTT
12165274 CTTCATCTGAACAAATACGACCTAAAATCCATCCTAGTAGGAAGTGGGACTCACTGAGTGTGAGT
66 CTTCATCTGAACAAATACGACCTAAAATCCATCCTAGTAGGAAGTGGGACTCACTGAGTGTGAGT
12165339 CGATAACTCATCACCTTGATGCAAGAATCGAATTGTTGGGGGTGAGTGGAAGCTTGTTTTCCATG
131 CGATAACTCATCACCTTGATGCAAGAATCGAATTGTTGGGGGTGAGTGGAAGCTTGTTTTCCATG
*
12165404 GGAGTCAATGGTAGTGTACTCAAAGGGAGATGATTTGTTAC
196 GGAGTCAATGGTAGTGTGCTCAAAGGGAGATGATTTGTTAC
12165445 CTGCATACAC
Statistics
Matches: 469, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
236 469 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (236 bp):
TCAAAGGTACCAGGTAAGAATACATATGAATAATATACTCATGGCTGCATTTTCATTCAACACTT
CTTCATCTGAACAAATACGACCTAAAATCCATCCTAGTAGGAAGTGGGACTCACTGAGTGTGAGT
CGATAACTCATCACCTTGATGCAAGAATCGAATTGTTGGGGGTGAGTGGAAGCTTGTTTTCCATG
GGAGTCAATGGTAGTGTGCTCAAAGGGAGATGATTTGTTAC
Found at i:12172922 original size:25 final size:23
Alignment explanation
Indices: 12172894--12172943 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
12172884 GAACAAAAAG
*
12172894 AAAATATTTTATGTTTAAAATATTT
1 AAAATA-TATATGTTTAAAA-ATTT
*
12172919 AAAATATATATTTTTAAAAATTT
1 AAAATATATATGTTTAAAAATTT
12172942 AA
1 AA
12172944 TTAATAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 6 0.26
24 11 0.48
25 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
AAAATATATATGTTTAAAAATTT
Found at i:12176094 original size:19 final size:20
Alignment explanation
Indices: 12176070--12176108 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
12176060 CGGAAAATGA
*
12176070 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATATACT
12176089 TTTCTGGAAAATGATATACT
1 TTTCTGGAAAATGATATACT
12176109 GAAAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (20 bp):
TTTCTGGAAAATGATATACT
Found at i:12176312 original size:22 final size:24
Alignment explanation
Indices: 12176287--12176337 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
12176277 TTATTTATAA
12176287 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAATACTCAATATTAAAAT
12176307 ATATAATAATACTCAATTATTAAAAT
1 ATA-AATAATACTCAA-TATTAAAAT
12176333 ATAAA
1 ATAAA
12176338 AGCATTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAATACTCAATATTAAAAT
Found at i:12178565 original size:12 final size:12
Alignment explanation
Indices: 12178550--12178583 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
12178540 TGTCAAGGAT
12178550 AGGGGAAAGGGA
1 AGGGGAAAGGGA
*
12178562 AGGGGAAGGGGA
1 AGGGGAAAGGGA
*
12178574 AGGGAAAAGG
1 AGGGGAAAGG
12178584 AAGATCGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (12 bp):
AGGGGAAAGGGA
Found at i:12178585 original size:17 final size:18
Alignment explanation
Indices: 12178544--12178586 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
12178534 ATCAGGTGTC
12178544 AAGGATAGGGGAAAGGGAA
1 AAGGA-AGGGGAAAGGGAA
**
12178563 GGGGAAGGGG-AAGGGAA
1 AAGGAAGGGGAAAGGGAA
12178580 AAGGAAG
1 AAGGAAG
12178587 ATCGGTGTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 12 0.60
18 5 0.25
19 3 0.15
ACGTcount: A:0.44, C:0.00, G:0.53, T:0.02
Consensus pattern (18 bp):
AAGGAAGGGGAAAGGGAA
Found at i:12178746 original size:13 final size:14
Alignment explanation
Indices: 12178728--12178756 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
12178718 CTGGAAAAGG
12178728 CTGAAAAAT-TTTT
1 CTGAAAAATGTTTT
12178741 CTGAAAAATGTTTT
1 CTGAAAAATGTTTT
12178755 CT
1 CT
12178757 ATAATCAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.45
Consensus pattern (14 bp):
CTGAAAAATGTTTT
Found at i:12191143 original size:13 final size:13
Alignment explanation
Indices: 12191125--12191149 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12191115 GCTTGTCGAT
12191125 CAACTAAACAAGC
1 CAACTAAACAAGC
12191138 CAACTAAACAAG
1 CAACTAAACAAG
12191150 TCATTCAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.28, G:0.08, T:0.08
Consensus pattern (13 bp):
CAACTAAACAAGC
Found at i:12201902 original size:21 final size:21
Alignment explanation
Indices: 12201878--12201918 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
12201868 AGTATAGAAG
*
12201878 AAGCCACCTGGGAACCCGAGA
1 AAGCCACCTAGGAACCCGAGA
12201899 AAGCCACCTAGGAACCCGAG
1 AAGCCACCTAGGAACCCGAG
12201919 GGAGCTATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.34, G:0.27, T:0.05
Consensus pattern (21 bp):
AAGCCACCTAGGAACCCGAGA
Found at i:12209968 original size:20 final size:20
Alignment explanation
Indices: 12209919--12209968 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
12209909 TATCGATCTG
** *
12209919 GTATCGATACCTTTCTTAAT
1 GTATCGATATGTTTCCTAAT
12209939 GTATCGATATGTTTCCTAAT
1 GTATCGATATGTTTCCTAAT
*
12209959 GTATTGATAT
1 GTATCGATAT
12209969 TCCTGTTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (20 bp):
GTATCGATATGTTTCCTAAT
Found at i:12217610 original size:25 final size:25
Alignment explanation
Indices: 12217541--12217684 Score: 157
Period size: 25 Copynumber: 5.8 Consensus size: 25
12217531 TCTTGTATAT
*
12217541 GTATGCTCATACGAGCTGT-GAATCA
1 GTATGCTCACACGAGCTGTAG-ATCA
** * *
12217566 GTATGCTCACTTGAGTTGTAGATTA
1 GTATGCTCACACGAGCTGTAGATCA
* *
12217591 GTATGCTCTCACGAGCTGTAAATC-
1 GTATGCTCACACGAGCTGTAGATCA
*
12217615 GATATGCTCACACGAGCTGTAGATCG
1 G-TATGCTCACACGAGCTGTAGATCA
* * *
12217641 GTATGCTCATATGAGCTATAGATCA
1 GTATGCTCACACGAGCTGTAGATCA
12217666 GTATGCTCACACGAGCTGT
1 GTATGCTCACACGAGCTGT
12217685 GGGTCGAAAT
Statistics
Matches: 96, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
24 1 0.01
25 93 0.97
26 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAGATCA
Found at i:12217669 original size:75 final size:75
Alignment explanation
Indices: 12217542--12217684 Score: 200
Period size: 75 Copynumber: 1.9 Consensus size: 75
12217532 CTTGTATATG
* * * * *
12217542 TATGCTCATACGAGCTGTGAATCAGTATGCTCACTTGAGTTGTAGATTAGTATGCTCTCACGAGC
1 TATGCTCACACGAGCTGTGAATCAGTATGCTCACTTGAGCTATAGATCAGTATGCTCACACGAGC
12217607 TGTAAATCGA
66 TGTAAATCGA
*
12217617 TATGCTCACACGAGCTGT-AGATCGGTATGCTCA-TATGAGCTATAGATCAGTATGCTCACACGA
1 TATGCTCACACGAGCTGTGA-ATCAGTATGCTCACT-TGAGCTATAGATCAGTATGCTCACACGA
12217680 GCTGT
64 GCTGT
12217685 GGGTCGAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
74 2 0.03
75 58 0.97
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (75 bp):
TATGCTCACACGAGCTGTGAATCAGTATGCTCACTTGAGCTATAGATCAGTATGCTCACACGAGC
TGTAAATCGA
Found at i:12220192 original size:20 final size:20
Alignment explanation
Indices: 12220169--12220209 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
12220159 GTGCGTACGT
12220169 GCGTGTATATGCGCGCGCGC
1 GCGTGTATATGCGCGCGCGC
* *
12220189 GCGTGTGTGTGCGCGCGCGC
1 GCGTGTATATGCGCGCGCGC
12220209 G
1 G
12220210 TTTCCTTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.29, G:0.46, T:0.20
Consensus pattern (20 bp):
GCGTGTATATGCGCGCGCGC
Found at i:12243247 original size:103 final size:102
Alignment explanation
Indices: 12243127--12243335 Score: 364
Period size: 103 Copynumber: 2.0 Consensus size: 102
12243117 ACTTTTTTTC
*
12243127 TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTC
1 TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTTC
* *
12243192 AAAATAAAAGTTTTGATTTTTAAGAAAAATAGTATTT
66 AAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
12243229 TTTTAAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTT
1 TTTT-AGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTT
* *
12243294 CAAAATAAAAGCTTTGATCTTTAATAAAAATAGTGTTT
65 CAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
12243332 TTTT
1 TTTT
12243336 TTAAAAGAGA
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
102 4 0.04
103 97 0.96
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (102 bp):
TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTTC
AAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
Found at i:12243480 original size:147 final size:147
Alignment explanation
Indices: 12243198--12243482 Score: 321
Period size: 147 Copynumber: 1.9 Consensus size: 147
12243188 TTTCAAAATA
* *
12243198 AAAGTTTTGATTTTTAAGAAAAATAGTATTTTTTTAAGTCATTTTAAAGGAAAGTTTAAATTTTT
1 AAAGTTTAGATTTTTAAGAAAAATAGTATTTTTTTAAGTAATTTTAAAGGAAAGTTTAAATTTTT
* * ** * * *
12243263 AAAATAAAGTTTTGATTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAATAAAAATAGT
66 AAAACAAAATTTCAATTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAACACT
12243328 GTTTTTTTTTAAAAGAG
131 GTTTTTTTTTAAAAGAG
* *
12243345 AAAGTTTAGATTTTTAA-AATAAA-ATTATGTTTTTT-AGTAATTTTAAAGGAGAA-TTTGAATT
1 AAAGTTTAGATTTTTAAGAA-AAATAGTAT-TTTTTTAAGTAATTTTAAAGGA-AAGTTT-AAAT
* ** * *
12243406 TTTTAAAACAAAATTTCAATCTT-TTTCAATTATTTTGAAAT-AAAGTTTTGATTTTTAAGAAAA
62 TTTTAAAACAAAATTTCAAT-TTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAA
* *
12243469 GCACTGATTTTTTT
126 ACACTGTTTTTTTT
12243483 AAAGAAAAAT
Statistics
Matches: 115, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
146 52 0.45
147 61 0.53
148 2 0.02
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (147 bp):
AAAGTTTAGATTTTTAAGAAAAATAGTATTTTTTTAAGTAATTTTAAAGGAAAGTTTAAATTTTT
AAAACAAAATTTCAATTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAACACT
GTTTTTTTTTAAAAGAG
Found at i:12244241 original size:31 final size:31
Alignment explanation
Indices: 12244206--12244268 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
12244196 CATCATCATG
12244206 TCAATGTCTTATTTATTTAACTTATTTAAGT
1 TCAATGTCTTATTTATTTAACTTATTTAAGT
* * *
12244237 TCAATGTCTTATTTATTTCAGTTATTTCAGT
1 TCAATGTCTTATTTATTTAACTTATTTAAGT
12244268 T
1 T
12244269 TTCTTTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.56
Consensus pattern (31 bp):
TCAATGTCTTATTTATTTAACTTATTTAAGT
Found at i:12244709 original size:14 final size:14
Alignment explanation
Indices: 12244690--12244719 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
12244680 AGAAACTTTT
12244690 TAAGAAAGCTAATA
1 TAAGAAAGCTAATA
12244704 TAAGAAAGCTAATA
1 TAAGAAAGCTAATA
12244718 TA
1 TA
12244720 CATTACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (14 bp):
TAAGAAAGCTAATA
Found at i:12245553 original size:23 final size:20
Alignment explanation
Indices: 12245527--12245576 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
12245517 GGTTTTTTAG
12245527 TATTTGTGCATATTAGATTTATT
1 TATTTGTGC--ATTA-ATTTATT
*
12245550 TATTCGTGCATTAATTTATT
1 TATTTGTGCATTAATTTATT
*
12245570 TAGTTGT
1 TATTTGT
12245577 CCAATGTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.50
21 4 0.17
23 8 0.33
ACGTcount: A:0.24, C:0.06, G:0.14, T:0.56
Consensus pattern (20 bp):
TATTTGTGCATTAATTTATT
Found at i:12246134 original size:24 final size:26
Alignment explanation
Indices: 12246102--12246155 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
12246092 CTTCATAAGC
* *
12246102 ATTTATTCA-TATGTTTTGTG-TTTA
1 ATTTATTCACAATGTTTTATGATTTA
*
12246126 ATTTTTTCACAATGTTTTATGATTTA
1 ATTTATTCACAATGTTTTATGATTTA
12246152 ATTT
1 ATTT
12246156 CAATTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.32
25 9 0.36
26 8 0.32
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.61
Consensus pattern (26 bp):
ATTTATTCACAATGTTTTATGATTTA
Found at i:12248286 original size:4 final size:4
Alignment explanation
Indices: 12248267--12248309 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
12248257 GTGCCCCAAT
* * * *
12248267 TTCA ATCA TGCA TTCA TTCA TTCA TCCA TTCA TTCA CTCA TTC
1 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTC
12248310 GCTCATTTGT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.30, G:0.02, T:0.42
Consensus pattern (4 bp):
TTCA
Found at i:12253429 original size:17 final size:17
Alignment explanation
Indices: 12253407--12253442 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
12253397 AGGAGTATTT
12253407 AAGGGCTCGTAATCACC
1 AAGGGCTCGTAATCACC
12253424 AAGGGCTCGTAATCACC
1 AAGGGCTCGTAATCACC
12253441 AA
1 AA
12253443 TCAGAGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (17 bp):
AAGGGCTCGTAATCACC
Found at i:12269527 original size:23 final size:23
Alignment explanation
Indices: 12269499--12269542 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
12269489 CTTTCTTACT
* *
12269499 GTAGTAATTTTTGGGGTATTATA
1 GTAGTAATTTTCGGGATATTATA
12269522 GTAGTAATTTTCGGGATATTA
1 GTAGTAATTTTCGGGATATTA
12269543 CAGGAAGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (23 bp):
GTAGTAATTTTCGGGATATTATA
Found at i:12269620 original size:42 final size:42
Alignment explanation
Indices: 12269561--12269900 Score: 450
Period size: 42 Copynumber: 8.1 Consensus size: 42
12269551 ATAGAAAGCA
12269561 TTCATTGCATTTAGAGGCCCAGGTGTGGAGG-CTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTC-CATTTACTT
* *
12269603 TTCATTGCATTTAGAGGCCCACGTGTGGAGGTCCATTGACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
12269645 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
12269687 TTCATTGCATTTAGAGGCCCACGTGTAGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
12269729 TTTATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
12269771 TTCATTGCATTTAGAGGCCCTA-GTGTAGAGGTTCATTCACTT
1 TTCATTGCATTTAGAGGCCC-AGGTGTGGAGGTCCATTTACTT
* * **
12269813 TTCATTGCATTTAAAGACTTAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
12269855 TTCATTGCATTTAAAAGCCCAAGTGTGGATGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
12269897 TTCA
1 TTCA
12269901 CTATATTGTA
Statistics
Matches: 264, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.00
42 261 0.99
43 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:12272495 original size:20 final size:21
Alignment explanation
Indices: 12272453--12272498 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
12272443 AAATAGTGTT
*
12272453 TTTTTAAAGAGAAAGTTTAGA
1 TTTTTAAAGAGAAAATTTAGA
* *
12272474 TTTTTAAA-ATAAAATTTTGA
1 TTTTTAAAGAGAAAATTTAGA
12272494 TTTTT
1 TTTTT
12272499 TTCAACTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (21 bp):
TTTTTAAAGAGAAAATTTAGA
Found at i:12272499 original size:21 final size:22
Alignment explanation
Indices: 12272452--12272499 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
12272442 AAAATAGTGT
*
12272452 TTTTTTAAAGAGAAAGTTTAGA
1 TTTTTTAAAGAGAAAATTTAGA
* *
12272474 -TTTTTAAA-ATAAAATTTTGA
1 TTTTTTAAAGAGAAAATTTAGA
12272494 TTTTTT
1 TTTTTT
12272500 TCAACTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (22 bp):
TTTTTTAAAGAGAAAATTTAGA
Found at i:12272500 original size:145 final size:147
Alignment explanation
Indices: 12272210--12272487 Score: 454
Period size: 145 Copynumber: 1.9 Consensus size: 147
12272200 AAAAAAAATT
*
12272210 TAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTTGATTTTTTTTAACTATTTCAAA
1 TAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAA-TTTGATTTTTTTCAACTATTTCAAA
* *
12272275 ATAAAAGCTTTGATCATTAATAAAAATAATGTTTTTTTAAAAAGAGAGTTTAGATTTTAAAAAAT
65 ATAAAAGCTTTGATCATTAAGAAAAATAATGTTTTTTTAAAAAGAAAGTTTAGATTTTAAAAAAT
12272340 AAAAATCTATCTTTTTTG
130 AAAAATCTATCTTTTTTG
*
12272358 TAGTCATTTTAAAGGAAAGTTT-AAATTTTTAAAAAAAA-TTGATTTTTTTCAACTATTTCAAAA
1 TAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTGATTTTTTTCAACTATTTCAAAA
* * * *
12272421 TAAAAGCTTTGATCTTTAAGAAAAATAGTGTTTTTTTAAAGAGAAAGTTTAGATTTT-TAAAATA
66 TAAAAGCTTTGATCATTAAGAAAAATAATGTTTTTTTAAAAAGAAAGTTTAGATTTTAAAAAATA
12272485 AAA
131 AAA
12272488 TTTTGATTTT
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
144 9 0.07
145 76 0.62
147 15 0.12
148 22 0.18
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.42
Consensus pattern (147 bp):
TAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTGATTTTTTTCAACTATTTCAAAA
TAAAAGCTTTGATCATTAAGAAAAATAATGTTTTTTTAAAAAGAAAGTTTAGATTTTAAAAAATA
AAAATCTATCTTTTTTG
Found at i:12272508 original size:94 final size:91
Alignment explanation
Indices: 12272364--12272556 Score: 266
Period size: 94 Copynumber: 2.1 Consensus size: 91
12272354 TTTGTAGTCA
12272364 TTTTAAAG-GAAAGTTTAAATTTTTAAAAAAAATTGATTTTTTTCAACTATTTCAAAATAAAAGC
1 TTTTAAAGAGAAAGTTTAAATTTTTAAAAAAAATTGATTTTTTTCAACTATTTCAAAATAAAA-C
* *
12272428 TTTGATCT-TTAAGAAAAATAGT-GTTT
65 TTTGAT-TGTTAAGAAAAATAATAATTT
* *
12272454 TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTCGAAATAAA
1 TTTTAAAGAGAAAGTTTAAATTTTTAAAA-AAAA--TTGATTTTTTTCAACTATTTCAAAATAAA
* *
12272519 ATTTTGATTGTTAAGAAAAGTAATAATTT
63 ACTTTGATTGTTAAGAAAAATAATAATTT
12272548 TTTTAAAGA
1 TTTTAAAGA
12272557 AAACTTTGAT
Statistics
Matches: 91, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
90 8 0.09
91 19 0.21
92 5 0.05
93 18 0.20
94 41 0.45
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (91 bp):
TTTTAAAGAGAAAGTTTAAATTTTTAAAAAAAATTGATTTTTTTCAACTATTTCAAAATAAAACT
TTGATTGTTAAGAAAAATAATAATTT
Found at i:12272548 original size:145 final size:145
Alignment explanation
Indices: 12272213--12272551 Score: 357
Period size: 145 Copynumber: 2.3 Consensus size: 145
12272203 AAAAATTTAG
* * * *
12272213 TCATTTTAAAGGAAAGTTTAAAATT-TTAAAAAAAAATTTTGATTTTTTTTAACTATTTCAAAAT
1 TCATTTGAAAGGAAAATTT-AAATTGTT-AAAAAAAA--TTAATTTTTTTCAACTATTTCAAAAT
* *
12272277 AAAAGCTTTGATCATTAATAAAAATAATGTTTTTTTAAAAAGAGAGTTTAGATTTTAAAAAATAA
62 AAAAGCTTTGATCATTAAGAAAAATAATGTTTTTTTAAAAAGAAAGTTTAGATTTTAAAAAATAA
** *
12272342 AAATCTATCTTTTTTGTAG
127 AAATCTATCTTTTTTCAAC
* * * *
12272361 TCATTTTAAAGGAAAGTTTAAATTTTTAAAAAAAATTGATTTTTTTCAACTATTTCAAAATAAAA
1 TCATTTGAAAGGAAAATTTAAATTGTTAAAAAAAATTAATTTTTTTCAACTATTTCAAAATAAAA
* * * * *
12272426 GCTTTGATCTTTAAGAAAAATAGTGTTTTTTTAAAGAGAAAGTTTAGATTTT-TAAAATAAAATT
66 GCTTTGATCATTAAGAAAAATAATGTTTTTTTAAAAAGAAAGTTTAGATTTTAAAAAATAAAAAT
*
12272490 TTGAT-TTTTTTCAAC
131 CT-ATCTTTTTTCAAC
* **
12272505 T-ATTTCGAAA-TAAAATTTTGATTGTTAAGAAAAGTAA-TAATTTTTTT
1 TCATTT-GAAAGGAAAATTTAAATTGTTAA-AAAA--AATTAATTTTTTT
12272552 AAAGAAAACT
Statistics
Matches: 166, Mismatches: 19, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
143 17 0.10
144 26 0.16
145 87 0.52
146 2 0.01
147 13 0.08
148 21 0.13
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (145 bp):
TCATTTGAAAGGAAAATTTAAATTGTTAAAAAAAATTAATTTTTTTCAACTATTTCAAAATAAAA
GCTTTGATCATTAAGAAAAATAATGTTTTTTTAAAAAGAAAGTTTAGATTTTAAAAAATAAAAAT
CTATCTTTTTTCAAC
Found at i:12273833 original size:3 final size:3
Alignment explanation
Indices: 12273825--12273850 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
12273815 TCTTTTACAA
12273825 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
12273851 AAGATCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:12274868 original size:27 final size:27
Alignment explanation
Indices: 12274838--12274895 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
12274828 TCCATGATGG
* * *
12274838 TAAACACGGGTTAGTCTACCGAGACAA
1 TAAACACAGGATAGTCCACCGAGACAA
*
12274865 TAAACACAGGATAGTCCATCGAGACAA
1 TAAACACAGGATAGTCCACCGAGACAA
12274892 TAAA
1 TAAA
12274896 AATAGGGTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.17
Consensus pattern (27 bp):
TAAACACAGGATAGTCCACCGAGACAA
Found at i:12279842 original size:23 final size:23
Alignment explanation
Indices: 12279810--12279867 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
12279800 TGACTATTAA
*
12279810 GCCTTAGTGGTGTATTTTGTGTT
1 GCCTTTGTGGTGTATTTTGTGTT
12279833 GCCTTTGTGGTGTATTTTGTGTT
1 GCCTTTGTGGTGTATTTTGTGTT
12279856 GCCTTTGTGGTG
1 GCCTTTGTGGTG
12279868 AATTCTGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.05, C:0.10, G:0.33, T:0.52
Consensus pattern (23 bp):
GCCTTTGTGGTGTATTTTGTGTT
Found at i:12281689 original size:98 final size:98
Alignment explanation
Indices: 12281575--12281769 Score: 329
Period size: 98 Copynumber: 2.0 Consensus size: 98
12281565 TTTGCTCAAA
*
12281575 TACTTTAGTTTTAATCATTTGTTTTCTTTTCT-TCTTATTTTTAGTTTGTCTATTTTTGTTTTTG
1 TACTTTAGTTTTAATCATGTGTTTTCTTTT-TGTCTTATTTTTAGTTTGTCTATTTTTGTTTTTG
* * *
12281639 TTTTTTGTTTACTTGAGGACAAGCAACGACTTAG
65 TTTTTCGTTTACTTAAGGACAAACAACGACTTAG
12281673 TACTTTAGTTTTAATCATGTGTTTTCTTTTTGTCTTATTTTTAGTTTGTCTATTTTTGTTTTTGT
1 TACTTTAGTTTTAATCATGTGTTTTCTTTTTGTCTTATTTTTAGTTTGTCTATTTTTGTTTTTGT
*
12281738 TTTTCGTTTACTTAAGGACAAACAATGACTTA
66 TTTTCGTTTACTTAAGGACAAACAACGACTTA
12281770 AGTGTGGGGG
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
97 1 0.01
98 90 0.99
ACGTcount: A:0.18, C:0.11, G:0.13, T:0.58
Consensus pattern (98 bp):
TACTTTAGTTTTAATCATGTGTTTTCTTTTTGTCTTATTTTTAGTTTGTCTATTTTTGTTTTTGT
TTTTCGTTTACTTAAGGACAAACAACGACTTAG
Found at i:12281728 original size:15 final size:15
Alignment explanation
Indices: 12281701--12281733 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
12281691 GTGTTTTCTT
12281701 TTTGTCTTATTTTTAG
1 TTTGTCTTATTTTT-G
12281717 TTTGTC-TATTTTTG
1 TTTGTCTTATTTTTG
12281731 TTT
1 TTT
12281734 TTGTTTTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 7 0.41
16 6 0.35
ACGTcount: A:0.09, C:0.06, G:0.12, T:0.73
Consensus pattern (15 bp):
TTTGTCTTATTTTTG
Found at i:12281869 original size:24 final size:24
Alignment explanation
Indices: 12281839--12281887 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
12281829 TTAATGAGAT
12281839 TGTTTTTCTAGTTATTTTAATATC
1 TGTTTTTCTAGTTATTTTAATATC
12281863 TGTTTTTCTAGTTATTTTAATATC
1 TGTTTTTCTAGTTATTTTAATATC
12281887 T
1 T
12281888 TTTATTACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.08, G:0.08, T:0.63
Consensus pattern (24 bp):
TGTTTTTCTAGTTATTTTAATATC
Found at i:12283865 original size:15 final size:16
Alignment explanation
Indices: 12283840--12283870 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
12283830 GCAAAACGAA
12283840 AAAGAAAAGGAGAAAG
1 AAAGAAAAGGAGAAAG
12283856 AAAG-AAAGGAGAAAG
1 AAAGAAAAGGAGAAAG
12283871 CAAACCTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AAAGAAAAGGAGAAAG
Found at i:12284797 original size:37 final size:38
Alignment explanation
Indices: 12284699--12284799 Score: 96
Period size: 37 Copynumber: 2.6 Consensus size: 38
12284689 CTTTGAGTCG
* ** *
12284699 ATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATTCG
1 ATGAGACACTGGGTGTCAA-TT--TACTTCAGATTAAGCCA
* * * *
12284740 ATGAGGCACTAGGTGCCAATTTACTTCAG-TTTAGCCA
1 ATGAGACACTGGGTGTCAATTTACTTCAGATTAAGCCA
12284777 ATGAGACACTGGGTGTCAATTTA
1 ATGAGACACTGGGTGTCAATTTA
12284800 TTACTTCAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
37 24 0.49
38 7 0.14
40 2 0.04
41 16 0.33
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (38 bp):
ATGAGACACTGGGTGTCAATTTACTTCAGATTAAGCCA
Found at i:12286445 original size:20 final size:20
Alignment explanation
Indices: 12286412--12286450 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
12286402 TTTTAAAGTT
*
12286412 AATAATAATTTTAAAATTTA
1 AATAATAATCTTAAAATTTA
* *
12286432 AATAATACTCTTAATATTT
1 AATAATAATCTTAAAATTT
12286451 TACAAAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
AATAATAATCTTAAAATTTA
Found at i:12286482 original size:24 final size:23
Alignment explanation
Indices: 12286444--12286490 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
12286434 TAATACTCTT
*
12286444 AATATTTTACAAAAATATTATATA
1 AATATTTTACAAAAA-AATATATA
**
12286468 AATATTTTAGTAAAAAATATATA
1 AATATTTTACAAAAAAATATATA
12286491 CTACAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (23 bp):
AATATTTTACAAAAAAATATATA
Found at i:12287997 original size:3 final size:3
Alignment explanation
Indices: 12287989--12288015 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
12287979 NNNNNNNNCT
12287989 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
12288016 GTGAGATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:12289284 original size:31 final size:31
Alignment explanation
Indices: 12289249--12289366 Score: 88
Period size: 31 Copynumber: 3.9 Consensus size: 31
12289239 AAAGATTAAC
* * * *
12289249 TACCAAATTA-AAAATAATTGTTAAGTTTAGG
1 TACCAAATTAGAAAA-AAGTGTCAAGTTCAAG
*
12289280 TACCAAATTAGGAAAAAGTGTCAAGTTCAAG
1 TACCAAATTAGAAAAAAGTGTCAAGTTCAAG
*
12289311 TACCAAATTAGACCAAAAAATGTC-A--T--A-
1 TACCAAATTAGA--AAAAAGTGTCAAGTTCAAG
* *
12289338 TACCAAATTAGAAAAAATTGTTAAGTTCA
1 TACCAAATTAGAAAAAAGTGTCAAGTTCA
12289367 TGAACCTAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
25 8 0.11
26 1 0.01
27 12 0.17
28 2 0.03
30 1 0.01
31 33 0.47
32 4 0.06
33 9 0.13
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (31 bp):
TACCAAATTAGAAAAAAGTGTCAAGTTCAAG
Found at i:12289361 original size:89 final size:92
Alignment explanation
Indices: 12289183--12289364 Score: 223
Period size: 91 Copynumber: 2.0 Consensus size: 92
12289173 AAACAAAAGA
* * * ** * *
12289183 TTAGGTACTAAATTAGGGAAAAAGTGGTAAGTTGAGGTACTTAATTGGACCGAAAAAAAGATTAA
1 TTAGGTACCAAATTAGGGAAAAAGTGGTAAGTTCAAGTACCAAATTAGACCGAAAAAAAGATCAA
12289248 CTACCAAATTAAAAATAATTGTTAAGT
66 CTACCAAATTAAAAATAATTGTTAAGT
*
12289275 TTAGGTACCAAATTA-GGAAAAAGT-GTCAAGTTCAAGTACCAAATTAGACC-AAAAAATG-TCA
1 TTAGGTACCAAATTAGGGAAAAAGTGGT-AAGTTCAAGTACCAAATTAGACCGAAAAAAAGATCA
12289336 TA-TACCAAATTAGAAAA-AATTGTTAAGT
65 -ACTACCAAATTA-AAAATAATTGTTAAGT
12289364 T
1 T
12289365 CATGAACCTA
Statistics
Matches: 79, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
89 24 0.30
90 14 0.18
91 27 0.34
92 14 0.18
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (92 bp):
TTAGGTACCAAATTAGGGAAAAAGTGGTAAGTTCAAGTACCAAATTAGACCGAAAAAAAGATCAA
CTACCAAATTAAAAATAATTGTTAAGT
Found at i:12295519 original size:26 final size:26
Alignment explanation
Indices: 12295490--12295599 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
12295480 GTGTTGATCG
12295490 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCA
* *
12295516 AAATACCCTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCA
* *
12295542 AAATACCCTGGATGGGTAAATTATCA
1 AAATACCCTCGATGGGTAAATTACCA
* *
12295568 AAATGCCCTCGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCA
12295594 AAATAC
1 AAATAC
12295600 TCCCGTAGGG
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTACCA
Found at i:12295543 original size:52 final size:52
Alignment explanation
Indices: 12295486--12295599 Score: 192
Period size: 52 Copynumber: 2.2 Consensus size: 52
12295476 CATGGTGTTG
12295486 ATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATT
1 ATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATT
* * *
12295538 ATCGAAATACCCTGGATGGGTAAATTATCAAAATGCCCTCGATGGGTAAATT
1 ATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATT
*
12295590 ACCGAAATAC
1 ATCGAAATAC
12295600 TCCCGTAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (52 bp):
ATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATT
Found at i:12300802 original size:18 final size:18
Alignment explanation
Indices: 12300770--12300820 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
12300760 AAATTTTATT
*
12300770 TATTTTTCTTGGGAATCTA
1 TATTTTCCTT-GGAATCTA
12300789 TATTTTCCTTGGAATCTA
1 TATTTTCCTTGGAATCTA
*
12300807 -ACTTTCCCTTGGAA
1 TA-TTTTCCTTGGAA
12300821 GTTATTTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 1 0.03
18 19 0.66
19 9 0.31
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.47
Consensus pattern (18 bp):
TATTTTCCTTGGAATCTA
Found at i:12304926 original size:40 final size:41
Alignment explanation
Indices: 12304871--12304948 Score: 131
Period size: 40 Copynumber: 1.9 Consensus size: 41
12304861 GCCATTTTTC
*
12304871 AGCAAAAGCGCTTCCAGTAGGAAGCTCTTTT-CTCCAAGTT
1 AGCAAAAGCGCTTCCACTAGGAAGCTCTTTTCCTCCAAGTT
*
12304911 AGCAAAATCGCTTCCACTAGGAAGCTCTTTTCCTCCAA
1 AGCAAAAGCGCTTCCACTAGGAAGCTCTTTTCCTCCAA
12304949 CTGTCACCTG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 29 0.83
41 6 0.17
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (41 bp):
AGCAAAAGCGCTTCCACTAGGAAGCTCTTTTCCTCCAAGTT
Found at i:12307385 original size:19 final size:20
Alignment explanation
Indices: 12307352--12307390 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
12307342 TAGTTTAGTT
* *
12307352 ATTTTTTTATCTTTTTATTA
1 ATTTTTTAATCTTTTAATTA
12307372 ATTTTTTAAT-TTTTAATTA
1 ATTTTTTAATCTTTTAATTA
12307391 TTCATTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTTTTTAATCTTTTAATTA
Found at i:12320099 original size:22 final size:23
Alignment explanation
Indices: 12320074--12320126 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
12320064 AAGGAACTTG
*
12320074 AATTGATATATAA-TAACTA-GAA
1 AATT-ATATAGAATTAACTATGAA
*
12320096 AATTATTTAGAATTAACTATGAA
1 AATTATATAGAATTAACTATGAA
12320119 AATT-TATA
1 AATTATATA
12320127 AATATTAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 6 0.23
22 13 0.50
23 7 0.27
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.38
Consensus pattern (23 bp):
AATTATATAGAATTAACTATGAA
Found at i:12322396 original size:10 final size:11
Alignment explanation
Indices: 12322368--12322400 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
12322358 TTATATTACT
*
12322368 TAAAATAGAAA
1 TAAAATAAAAA
12322379 TAAAATAAAAA
1 TAAAATAAAAA
12322390 T-AAATAAAAA
1 TAAAATAAAAA
12322400 T
1 T
12322401 TATTTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:12324932 original size:14 final size:14
Alignment explanation
Indices: 12324913--12324943 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
12324903 ACAAATATCC
*
12324913 CAGATAAGATTACA
1 CAGATAAGAGTACA
12324927 CAGATAAGAGTACA
1 CAGATAAGAGTACA
12324941 CAG
1 CAG
12324944 TCAATGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (14 bp):
CAGATAAGAGTACA
Found at i:12329452 original size:21 final size:21
Alignment explanation
Indices: 12329426--12329474 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
12329416 TCTACATGGT
12329426 CGTGTGAAAGAGACACATTGCC
1 CGTGTGAAAGAGACACA-TGCC
**
12329448 C-TGTGGTAGAGACACATGCC
1 CGTGTGAAAGAGACACATGCC
12329468 CGTGTGA
1 CGTGTGA
12329475 GTAGCCTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 5 0.22
21 17 0.74
22 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.20
Consensus pattern (21 bp):
CGTGTGAAAGAGACACATGCC
Found at i:12331693 original size:19 final size:18
Alignment explanation
Indices: 12331669--12331707 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
12331659 ATTCCGTGTT
*
12331669 TGAATAGAAATAAAATAAA
1 TGAATAGAAA-AAAAGAAA
*
12331688 TGAATAGGAAAAAAGAAA
1 TGAATAGAAAAAAAGAAA
12331706 TG
1 TG
12331708 GGAAACATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (18 bp):
TGAATAGAAAAAAAGAAA
Found at i:12339246 original size:14 final size:15
Alignment explanation
Indices: 12339224--12339259 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
12339214 ACAAATGAGT
12339224 TATAT-GAAATTG-C
1 TATATGGAAATTGAC
12339237 TATATGGAAATTGAC
1 TATATGGAAATTGAC
12339252 T-TATGGAA
1 TATATGGAA
12339260 GGGACGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.24
14 14 0.67
15 2 0.10
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.36
Consensus pattern (15 bp):
TATATGGAAATTGAC
Found at i:12341206 original size:31 final size:31
Alignment explanation
Indices: 12341171--12341230 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
12341161 GATTCCAAGT
*
12341171 TCTAAGAAATAGCTAGAAAGATGAGGTGGGC
1 TCTAAGAAATAGCTAGAAAGATAAGGTGGGC
*
12341202 TCTAAGAAATAGCTAGAAAGCTAAGGTGG
1 TCTAAGAAATAGCTAGAAAGATAAGGTGG
12341231 AATCTTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.10, G:0.30, T:0.20
Consensus pattern (31 bp):
TCTAAGAAATAGCTAGAAAGATAAGGTGGGC
Found at i:12345713 original size:27 final size:27
Alignment explanation
Indices: 12345673--12345924 Score: 185
Period size: 27 Copynumber: 9.4 Consensus size: 27
12345663 GATTCATGGG
* * *
12345673 AAAATGACTGAAATACCCTCAAAAGGT
1 AAAATGACTAAAATACCCTCGAAGGGT
12345700 AAAATGACTAAAATACCC-CTGAAGGGT
1 AAAATGACTAAAATACCCTC-GAAGGGT
* *
12345727 AAAATGACTGAAATACCC-CTGAAGGGG
1 AAAATGACTAAAATACCCTC-GAAGGGT
* * *
12345754 AAAATTACCAAAATACCC-CAAAGGGT
1 AAAATGACTAAAATACCCTCGAAGGGT
** * *
12345780 GGAATGA-TCGAAATA-CCTCCGCAGGGT
1 AAAATGACT-AAAATACCCT-CGAAGGGT
* *
12345807 AAAATGACCAAAATACCCTTGAAGGGT
1 AAAATGACTAAAATACCCTCGAAGGGT
* * * *
12345834 AAAATGATTAAGATACCCCCGGAGGGT
1 AAAATGACTAAAATACCCTCGAAGGGT
* * *
12345861 AAAAT-AATCGAAATACTCTCGAAGGGT
1 AAAATGACT-AAAATACCCTCGAAGGGT
* * *
12345888 AAAATGACTGAAATACCCT-TATAGGAT
1 AAAATGACTAAAATACCCTCGA-AGGGT
12345915 AAAATGACTA
1 AAAATGACTA
12345925 TGATACCCCT
Statistics
Matches: 176, Mismatches: 40, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
25 2 0.01
26 18 0.10
27 151 0.86
28 5 0.03
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
AAAATGACTAAAATACCCTCGAAGGGT
Found at i:12345737 original size:54 final size:54
Alignment explanation
Indices: 12345673--12345934 Score: 216
Period size: 54 Copynumber: 4.9 Consensus size: 54
12345663 GATTCATGGG
* *
12345673 AAAATGACTGAAATACCCTCAAAAGGTAAAATGACTAAAATACCCCTGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCCTGAAGGGT
* * * *
12345727 AAAATGACTGAAATACCC-CTGAAGGGGAAAATTACCAAAATACCCC-AAAGGGT
1 AAAATGACTGAAATACCCTC-GAAGGGTAAAATGACTAAAATACCCCTGAAGGGT
** * * *
12345780 GGAATGA-TCGAAATA-CCTCCGCAGGGTAAAATGACCAAAATACCCTTGAAGGGT
1 AAAATGACT-GAAATACCCT-CGAAGGGTAAAATGACTAAAATACCCCTGAAGGGT
* * * * * *
12345834 AAAATGA-TTAAGATACCCCCGGAGGGTAAAAT-AATCGAAATA-CTCTCGAAGGGT
1 AAAATGACTGAA-ATACCCTCGAAGGGTAAAATGACT-AAAATACCCCT-GAAGGGT
* * **
12345888 AAAATGACTGAAATACCCT-TATAGGATAAAATGACTATGATACCCCT
1 AAAATGACTGAAATACCCTCGA-AGGGTAAAATGACTAAAATACCCCT
12345935 AGGAGATGAA
Statistics
Matches: 162, Mismatches: 33, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
52 3 0.02
53 45 0.28
54 104 0.64
55 10 0.06
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (54 bp):
AAAATGACTGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCCTGAAGGGT
Found at i:12345894 original size:81 final size:81
Alignment explanation
Indices: 12345673--12345933 Score: 255
Period size: 81 Copynumber: 3.2 Consensus size: 81
12345663 GATTCATGGG
* * * *
12345673 AAAATGACTGAA-ATACCCTCAAAAGGTAAAATGA-CTAAAATACC-CCTGAAGGGTAAAATGAC
1 AAAATGACT-AAGATACCCCCAAAGGGTAAAATAATC-GAAATACCTCC-GAAGGGTAAAATGAC
* *
12345735 TGAAATACCCCTGAAGGGG
63 TGAAATACCCTTGAAGGGT
* * * ** * * **
12345754 AAAATTACCAAAATA-CCCCAAAGGGTGGAATGATCGAAATACCTCCGCAGGGTAAAATGACCAA
1 AAAATGACTAAGATACCCCCAAAGGGTAAAATAATCGAAATACCTCCGAAGGGTAAAATGACTGA
12345818 AATACCCTTGAAGGGT
66 AATACCCTTGAAGGGT
* **
12345834 AAAATGATTAAGATACCCCCGGAGGGTAAAATAATCGAAATA-CTCTCGAAGGGTAAAATGACTG
1 AAAATGACTAAGATACCCCCAAAGGGTAAAATAATCGAAATACCTC-CGAAGGGTAAAATGACTG
*
12345898 AAATACCCTT-ATAGGAT
65 AAATACCCTTGA-AGGGT
*
12345915 AAAATGACTATGATACCCC
1 AAAATGACTAAGATACCCC
12345934 TAGGAGATGA
Statistics
Matches: 147, Mismatches: 27, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
80 67 0.46
81 80 0.54
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (81 bp):
AAAATGACTAAGATACCCCCAAAGGGTAAAATAATCGAAATACCTCCGAAGGGTAAAATGACTGA
AATACCCTTGAAGGGT
Found at i:12346330 original size:28 final size:28
Alignment explanation
Indices: 12346275--12346330 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
12346265 CACTATACTG
*
12346275 GTTACTGTATTGGGCTAAGGCCGGCACT
1 GTTACTGTATTGGGCTAAGGCCGACACT
*
12346303 GTTACTGTTTTGGGCTAAGGTCC-ACACT
1 GTTACTGTATTGGGCTAAGG-CCGACACT
12346331 ATACTGTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.92
29 2 0.08
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (28 bp):
GTTACTGTATTGGGCTAAGGCCGACACT
Found at i:12350379 original size:18 final size:19
Alignment explanation
Indices: 12350358--12350405 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 19
12350348 TGCTCATCTC
12350358 AGCTTGTT-TGATGATGGT
1 AGCTTGTTGTGATGATGGT
* *
12350376 AGCTTATTGGCTGATGATTGT
1 AGCTTGTT-G-TGATGATGGT
12350397 AGCTTGTTG
1 AGCTTGTTG
12350406 GCTGAGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 7 0.29
20 1 0.04
21 16 0.67
ACGTcount: A:0.17, C:0.08, G:0.31, T:0.44
Consensus pattern (19 bp):
AGCTTGTTGTGATGATGGT
Found at i:12350392 original size:21 final size:21
Alignment explanation
Indices: 12350366--12350410 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
12350356 TCAGCTTGTT
12350366 TGATGATGGTAGCTTATTGGC
1 TGATGATGGTAGCTTATTGGC
* *
12350387 TGATGATTGTAGCTTGTTGGC
1 TGATGATGGTAGCTTATTGGC
12350408 TGA
1 TGA
12350411 GCTACAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.09, G:0.33, T:0.40
Consensus pattern (21 bp):
TGATGATGGTAGCTTATTGGC
Found at i:12353180 original size:27 final size:27
Alignment explanation
Indices: 12353141--12353308 Score: 164
Period size: 27 Copynumber: 6.3 Consensus size: 27
12353131 AATTCGTAGG
* * *
12353141 AAAATAACCGAAATACCCTCGAAGGAT
1 AAAATGACTGAAATACCCTCGAAGGGT
* *
12353168 AAAATGACTGAAATACCTTAGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* *
12353195 AAAATGACTAAAATACCCCCGAAAGGG-
1 AAAATGACTGAAATACCCTCG-AAGGGT
* *
12353222 -AAATAACGGAAATACCC-CTGAAGGGT
1 AAAATGACTGAAATACCCTC-GAAGGGT
** *
12353248 AAAATGACCAAAATACCCCCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
*
12353275 AAAATGACTGAAACACCCTC-ATAGGGT
1 AAAATGACTGAAATACCCTCGA-AGGGT
12353302 AAAATGA
1 AAAATGA
12353309 TTGTGATACC
Statistics
Matches: 116, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
25 6 0.05
26 16 0.14
27 88 0.76
28 6 0.05
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.15
Consensus pattern (27 bp):
AAAATGACTGAAATACCCTCGAAGGGT
Found at i:12353275 original size:80 final size:80
Alignment explanation
Indices: 12353142--12353292 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
12353132 ATTCGTAGGA
** **
12353142 AAATAACCGAAATACCCTCGAAGGATAAAATGACTGAAATACCTTAGAAGGGTAAAATGACTAAA
1 AAATAACCGAAATACCCTCGAAGGATAAAATGACCAAAATACCCCAGAAGGGTAAAATGACTAAA
*
12353207 ATACCCCCGAAAGGG
66 ACACCCCCGAAAGGG
* * * *
12353222 AAATAACGGAAATACCC-CTGAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGACTGA
1 AAATAACCGAAATACCCTC-GAAGGATAAAATGACCAAAATACCCCAGAAGGGTAAAATGACTAA
12353286 AACACCC
65 AACACCC
12353293 TCATAGGGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.02
80 60 0.98
ACGTcount: A:0.46, C:0.21, G:0.19, T:0.15
Consensus pattern (80 bp):
AAATAACCGAAATACCCTCGAAGGATAAAATGACCAAAATACCCCAGAAGGGTAAAATGACTAAA
ACACCCCCGAAAGGG
Found at i:12353702 original size:28 final size:28
Alignment explanation
Indices: 12353662--12353719 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
12353652 CACTGTACTA
* * *
12353662 GTTACTGTATTGGGCTAAGGCCCGCATT
1 GTTACTATATTGGGCTAAAGCCCACATT
*
12353690 GTTACTATTTTGGGCTAAAGCCCACATT
1 GTTACTATATTGGGCTAAAGCCCACATT
12353718 GT
1 GT
12353720 ACTGTGACTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (28 bp):
GTTACTATATTGGGCTAAAGCCCACATT
Found at i:12370667 original size:35 final size:35
Alignment explanation
Indices: 12370599--12370739 Score: 140
Period size: 35 Copynumber: 4.0 Consensus size: 35
12370589 AGTACATCGA
* *
12370599 CAATCCAACCAAAATACACCAAATGCTCATAAGAGC
1 CAATCCATCCAAAACACACC-AATGCTCATAAGAGC
* *
12370635 CAATCCATCCAAAACACACCAATGCTCGTAAGAGT
1 CAATCCATCCAAAACACACCAATGCTCATAAGAGC
* * * * *
12370670 TAATCCCTCCAAAACACACCGATGCTCATAACAGT
1 CAATCCATCCAAAACACACCAATGCTCATAAGAGC
* * * *
12370705 TAATCCCTCCTAAACATACCAATGCTCGA-AAGAGC
1 CAATCCATCCAAAACACACCAATGCTC-ATAAGAGC
12370740 TAGTCCAACT
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
35 71 0.79
36 19 0.21
ACGTcount: A:0.40, C:0.32, G:0.10, T:0.18
Consensus pattern (35 bp):
CAATCCATCCAAAACACACCAATGCTCATAAGAGC
Found at i:12370755 original size:70 final size:70
Alignment explanation
Indices: 12370600--12370759 Score: 176
Period size: 70 Copynumber: 2.3 Consensus size: 70
12370590 GTACATCGAC
* * * *
12370600 AATCCAACCAAAATACACCAAATGCTCATAAGAGCCAATCCATCCAAAACACACCAATGCTCGTA
1 AATCCAACCAAAACACACC-GATGCTCATAACAGCCAATCCATCCAAAACACACCAATGCTCGAA
*
12370665 AGAGTT
65 AGAGCT
** ** * * *
12370671 AATCCCTCCAAAACACACCGATGCTCATAACAGTTAATCCCTCCTAAACATACCAATGCTCGAAA
1 AATCCAACCAAAACACACCGATGCTCATAACAGCCAATCCATCCAAAACACACCAATGCTCGAAA
12370736 GAGCT
66 GAGCT
* **
12370741 AGTCCAACTGAAACACACC
1 AATCCAACCAAAACACACC
12370760 AAAACAAAGA
Statistics
Matches: 72, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
70 56 0.78
71 16 0.22
ACGTcount: A:0.41, C:0.32, G:0.10, T:0.17
Consensus pattern (70 bp):
AATCCAACCAAAACACACCGATGCTCATAACAGCCAATCCATCCAAAACACACCAATGCTCGAAA
GAGCT
Found at i:12390067 original size:44 final size:44
Alignment explanation
Indices: 12390017--12390239 Score: 176
Period size: 44 Copynumber: 5.1 Consensus size: 44
12390007 TTCTAACCCA
12390017 CTGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
1 CTGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
* * *** * * * * * * * * *
12390061 CTGTAATTTTAAGAAGGTTACACTTGTGGTTTCAATATGCTCCA
1 CTGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
*
12390105 ATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
1 CTGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
* * *** * * * * * * * * *
12390149 CTGTAATTTTAAGAAGGTTACACTTGTGGTTTCAATATGCTCCA
1 CTGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
*
12390193 ATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
1 CTGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
12390237 CTG
1 CTG
12390240 AAACTTCAAG
Statistics
Matches: 119, Mismatches: 60, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
44 119 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.37
Consensus pattern (44 bp):
CTGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCG
Found at i:12390167 original size:88 final size:88
Alignment explanation
Indices: 12390018--12390239 Score: 444
Period size: 88 Copynumber: 2.5 Consensus size: 88
12390008 TCTAACCCAC
12390018 TGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGTAATTTTAAGAAGGTTACA
1 TGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGTAATTTTAAGAAGGTTACA
12390083 CTTGTGGTTTCAATATGCTCCAA
66 CTTGTGGTTTCAATATGCTCCAA
12390106 TGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGTAATTTTAAGAAGGTTACA
1 TGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGTAATTTTAAGAAGGTTACA
12390171 CTTGTGGTTTCAATATGCTCCAA
66 CTTGTGGTTTCAATATGCTCCAA
12390194 TGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTG
1 TGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTG
12390240 AAACTTCAAG
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 134 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (88 bp):
TGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTGTAATTTTAAGAAGGTTACA
CTTGTGGTTTCAATATGCTCCAA
Found at i:12390326 original size:44 final size:44
Alignment explanation
Indices: 12390267--12390632 Score: 201
Period size: 44 Copynumber: 7.8 Consensus size: 44
12390257 GAATTGGTAA
* *
12390267 CTTCAATCTGTTCCACTGCAACTTTAGGGAGATAAGGCTAGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGG
* *
12390311 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-T-A---GTGG
* * * ** * ** * *
12390365 CTTTAATCAGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAG-TGG
* * *
12390410 CTTCAGTCTGCTCCACCGCAACTTCAGGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGG
* * * *
12390454 CTTCACTCTGCTCCACTGCAAGTTCAGGAAGATAAGATCCGCCATAATTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-T-A---GTGG
* * * ** * ** * *
12390508 CTTTAATCAGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAG-TGG
* * *
12390553 CTTCAGTCTGCTCCACCGCAACTTCAGGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGG
* * *
12390597 CTTCACTCTGCTCCACTGCAAGTTCAGGAAGATAAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
12390633 ATCCGCCATA
Statistics
Matches: 236, Mismatches: 64, Indels: 44
0.69 0.19 0.13
Matches are distributed among these distances:
44 103 0.44
45 62 0.26
48 4 0.02
49 2 0.01
50 2 0.01
51 1 0.00
54 62 0.26
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGG
Found at i:12390472 original size:143 final size:143
Alignment explanation
Indices: 12390267--12390695 Score: 750
Period size: 143 Copynumber: 3.0 Consensus size: 143
12390257 GAATTGGTAA
* * * * * *
12390267 CTTCAATCTGTTCCACTGCAACTTTAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAA
1 CTTCAGTCTGCTCCACCGCAACTTCAGGGAGATAAGGCTGGTGGCTTCACTCTGCTCCACTGCAA
*
12390332 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCAGTTCCACTGCAACGCCAGGGAAA
66 GTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCAGTTCCACTGCAACGCCAGGGAAA
12390397 TAAGATTCGCTGT
131 TAAGATTCGCTGT
12390410 CTTCAGTCTGCTCCACCGCAACTTCAGGGAGATAAGGCTGGTGGCTTCACTCTGCTCCACTGCAA
1 CTTCAGTCTGCTCCACCGCAACTTCAGGGAGATAAGGCTGGTGGCTTCACTCTGCTCCACTGCAA
12390475 GTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCAGTTCCACTGCAACGCCAGGGAAA
66 GTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCAGTTCCACTGCAACGCCAGGGAAA
12390540 TAAGATTCGCTGT
131 TAAGATTCGCTGT
12390553 CTTCAGTCTGCTCCACCGCAACTTCAGGGAGATAAGGCTGGTGGCTTCACTCTGCTCCACTGCAA
1 CTTCAGTCTGCTCCACCGCAACTTCAGGGAGATAAGGCTGGTGGCTTCACTCTGCTCCACTGCAA
** * *
12390618 GTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAA
66 GTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCAGTTCCACTGCAACGCCAGGGAAA
*
12390683 TAAGATTCTCTGT
131 TAAGATTCGCTGT
12390696 AATGACTTCA
Statistics
Matches: 274, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
143 274 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (143 bp):
CTTCAGTCTGCTCCACCGCAACTTCAGGGAGATAAGGCTGGTGGCTTCACTCTGCTCCACTGCAA
GTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCAGTTCCACTGCAACGCCAGGGAAA
TAAGATTCGCTGT
Found at i:12392425 original size:29 final size:26
Alignment explanation
Indices: 12392367--12392459 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 26
12392357 CCCGGTAGAG
12392367 GTTTTTATTTTTTTGTTT-TTTTGTTCTTT
1 GTTTTT-TTTTTTT-TTTGTTTT-TT-TTT
12392396 GTTTTGTTTTTTGTTCTTTGTTTTTTTTT
1 GTTTT-TTTTTT-TT-TTTGTTTTTTTTT
*
12392425 GTTTTTTTTGTATTTTTTTGTTATTTTTT
1 G-TTTTTTT-T-TTTTTTTGTTTTTTTTT
12392454 GTTTTT
1 GTTTTT
12392460 CTTTCCTCTA
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
28 5 0.09
29 30 0.54
30 15 0.27
31 6 0.11
ACGTcount: A:0.03, C:0.02, G:0.12, T:0.83
Consensus pattern (26 bp):
GTTTTTTTTTTTTTTTGTTTTTTTTT
Found at i:12392427 original size:10 final size:10
Alignment explanation
Indices: 12392374--12392459 Score: 86
Period size: 10 Copynumber: 8.3 Consensus size: 10
12392364 GAGGTTTTTA
12392374 TTTTTTTGTT
1 TTTTTTTGTT
*
12392384 TTTTTGTTCTT
1 TTTTT-TTGTT
12392395 TGTTTTGTT-TT
1 T-TTTT-TTGTT
12392406 TTGTTCTTTGTT
1 TT-TT-TTTGTT
12392418 TTTTTTTG-T
1 TTTTTTTGTT
*
12392427 TTTTTTTGTA
1 TTTTTTTGTT
12392437 TTTTTTTGTT
1 TTTTTTTGTT
*
12392447 ATTTTTTGTT
1 TTTTTTTGTT
12392457 TTT
1 TTT
12392460 CTTTCCTCTA
Statistics
Matches: 65, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
9 9 0.14
10 30 0.46
11 14 0.22
12 12 0.18
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:12392434 original size:19 final size:19
Alignment explanation
Indices: 12392367--12392459 Score: 84
Period size: 19 Copynumber: 4.8 Consensus size: 19
12392357 CCCGGTAGAG
12392367 GTTTTTATTT-TTTTGTTTTT
1 GTTTTT-TTTGTTTT-TTTTT
*
12392387 -TTGTTCTTTGTTTTGTTTTT
1 GTT-TTTTTTGTTTT-TTTTT
* *
12392407 -TGTTCTTTGTTTTTTTTT
1 GTTTTTTTTGTTTTTTTTT
*
12392425 GTTTTTTTTGTATTTTTTT
1 GTTTTTTTTGTTTTTTTTT
12392444 GTTATTTTTTGTTTTT
1 GTT-TTTTTTGTTTTT
12392460 CTTTCCTCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
18 5 0.08
19 34 0.54
20 24 0.38
ACGTcount: A:0.03, C:0.02, G:0.12, T:0.83
Consensus pattern (19 bp):
GTTTTTTTTGTTTTTTTTT
Found at i:12400570 original size:12 final size:13
Alignment explanation
Indices: 12400541--12400574 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
12400531 ATTTGGGTTA
12400541 GGGTTTGGTAATTT
1 GGGTTT-GTAATTT
12400555 GGGTTTGTAA-TT
1 GGGTTTGTAATTT
12400567 GGGTTTGT
1 GGGTTTGT
12400575 TGTATTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 10 0.50
13 4 0.20
14 6 0.30
ACGTcount: A:0.12, C:0.00, G:0.38, T:0.50
Consensus pattern (13 bp):
GGGTTTGTAATTT
Found at i:12401463 original size:44 final size:44
Alignment explanation
Indices: 12401414--12401621 Score: 155
Period size: 44 Copynumber: 4.5 Consensus size: 44
12401404 GTCTACTCTG
12401414 CTGCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCA
* * * * *
12401458 CTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCAGTTCCA
1 CTGCAACTTCAGGGAGATAAG----G-C-T-A---GTGGCTTCAATCTGCTCCA
** * ** * * *
12401512 CTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGGCTAG-TGGCTTCAATCTGCTCCA
* * *
12401557 CCGCAACTTCAGGGAGATAAGGCTGGTGGCTTCACTCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCA
* *
12401601 CTGCAAGTTCAGGAAGATAAG
1 CTGCAACTTCAGGGAGATAAG
12401622 ATCCGCCATA
Statistics
Matches: 123, Mismatches: 30, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
44 55 0.45
45 31 0.25
48 2 0.02
49 1 0.01
50 1 0.01
51 1 0.01
54 32 0.26
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCA
Found at i:12401466 original size:143 final size:143
Alignment explanation
Indices: 12401300--12401684 Score: 538
Period size: 143 Copynumber: 2.7 Consensus size: 143
12401290 GATTTGGTAA
* * * * * ** *
12401300 CTTCAACCTACTCCACTGTAACTTCAGGGAGATAAGGTTTGCCATAATTTGTAACTTTAATTTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATTTGT
** * * ** *
12401365 TCCGTTGCAACGCCAGAGAAATAAGATTTGTTGTCTTCAGTCTACTCTGCTGCAACTTCAGGGAG
66 TCCACTGCAACGCCAGAGAAATAAGATTCGCTGTCTTCAGTCTACTCCACCGCAACTTCAGGGAG
12401430 ATAAGGCTAGTGG
131 ATAAGGCTAGTGG
**
12401443 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCAGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATTTGT
* *
12401508 TCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACCGCAACTTCAGGGAG
66 TCCACTGCAACGCCAGAGAAATAAGATTCGCTGTCTTCAGTCTACTCCACCGCAACTTCAGGGAG
*
12401573 ATAAGGCTGGTGG
131 ATAAGGCTAGTGG
* *
12401586 CTTCACTCTGCTCCACTGCAAGTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATTTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATTTGT
* *
12401651 TCCACTGCAATGCCA-AGGAAATAAGATTCTCTGT
66 TCCACTGCAACGCCAGA-GAAATAAGATTCGCTGT
12401685 AATGACTTCA
Statistics
Matches: 214, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
143 214 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (143 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATTTGT
TCCACTGCAACGCCAGAGAAATAAGATTCGCTGTCTTCAGTCTACTCCACCGCAACTTCAGGGAG
ATAAGGCTAGTGG
Found at i:12403400 original size:29 final size:26
Alignment explanation
Indices: 12403342--12403434 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 26
12403332 CCCGGTAGAG
12403342 GTTTTTATTTTTTTGTTT-TTTTGTTCTTT
1 GTTTTT-TTTTTTT-TTTGTTTT-TT-TTT
12403371 GTTTTGTTTTTTGTTCTTTGTTTTTTTTT
1 GTTTT-TTTTTT-TT-TTTGTTTTTTTTT
*
12403400 GTTTTTTTTGTATTTTTTTGTTATTTTTT
1 G-TTTTTTT-T-TTTTTTTGTTTTTTTTT
12403429 GTTTTT
1 GTTTTT
12403435 CTTTCCTCTA
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
28 5 0.09
29 30 0.54
30 15 0.27
31 6 0.11
ACGTcount: A:0.03, C:0.02, G:0.12, T:0.83
Consensus pattern (26 bp):
GTTTTTTTTTTTTTTTGTTTTTTTTT
Found at i:12403402 original size:10 final size:10
Alignment explanation
Indices: 12403349--12403434 Score: 86
Period size: 10 Copynumber: 8.3 Consensus size: 10
12403339 GAGGTTTTTA
12403349 TTTTTTTGTT
1 TTTTTTTGTT
*
12403359 TTTTTGTTCTT
1 TTTTT-TTGTT
12403370 TGTTTTGTT-TT
1 T-TTTT-TTGTT
12403381 TTGTTCTTTGTT
1 TT-TT-TTTGTT
12403393 TTTTTTTG-T
1 TTTTTTTGTT
*
12403402 TTTTTTTGTA
1 TTTTTTTGTT
12403412 TTTTTTTGTT
1 TTTTTTTGTT
*
12403422 ATTTTTTGTT
1 TTTTTTTGTT
12403432 TTT
1 TTT
12403435 CTTTCCTCTA
Statistics
Matches: 65, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
9 9 0.14
10 30 0.46
11 14 0.22
12 12 0.18
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:12403409 original size:19 final size:19
Alignment explanation
Indices: 12403342--12403434 Score: 84
Period size: 19 Copynumber: 4.8 Consensus size: 19
12403332 CCCGGTAGAG
12403342 GTTTTTATTT-TTTTGTTTTT
1 GTTTTT-TTTGTTTT-TTTTT
*
12403362 -TTGTTCTTTGTTTTGTTTTT
1 GTT-TTTTTTGTTTT-TTTTT
* *
12403382 -TGTTCTTTGTTTTTTTTT
1 GTTTTTTTTGTTTTTTTTT
*
12403400 GTTTTTTTTGTATTTTTTT
1 GTTTTTTTTGTTTTTTTTT
12403419 GTTATTTTTTGTTTTT
1 GTT-TTTTTTGTTTTT
12403435 CTTTCCTCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
18 5 0.08
19 34 0.54
20 24 0.38
ACGTcount: A:0.03, C:0.02, G:0.12, T:0.83
Consensus pattern (19 bp):
GTTTTTTTTGTTTTTTTTT
Found at i:12412150 original size:12 final size:14
Alignment explanation
Indices: 12412121--12412152 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
12412111 GTTTGGGATA
12412121 GGGTTTGGTAATTT
1 GGGTTTGGTAATTT
12412135 GGGTTT-GTAA-TT
1 GGGTTTGGTAATTT
12412147 GGGTTT
1 GGGTTT
12412153 TTGTATTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 4 0.22
14 6 0.33
ACGTcount: A:0.12, C:0.00, G:0.38, T:0.50
Consensus pattern (14 bp):
GGGTTTGGTAATTT
Found at i:12415423 original size:13 final size:14
Alignment explanation
Indices: 12415405--12415433 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12415395 AAAAATGAAC
12415405 AAAATGA-ATAGGA
1 AAAATGACATAGGA
12415418 AAAATGACATAGGA
1 AAAATGACATAGGA
12415432 AA
1 AA
12415434 TATTCAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.62, C:0.03, G:0.21, T:0.14
Consensus pattern (14 bp):
AAAATGACATAGGA
Found at i:12415671 original size:26 final size:26
Alignment explanation
Indices: 12415635--12415684 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12415625 GAACATGTTG
*
12415635 ATCGTTAAAATTTTATAAGGGGTACA
1 ATCGTTAAAATTTAATAAGGGGTACA
*
12415661 ATCGTTAAAATTTAATTAGGGGTA
1 ATCGTTAAAATTTAATAAGGGGTA
12415685 AAATAGGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (26 bp):
ATCGTTAAAATTTAATAAGGGGTACA
Done.