Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 46 of 136
Found at i:15218638 original size:125 final size:126
Alignment explanation
Indices: 15218417--15218677 Score: 506
Period size: 125 Copynumber: 2.1 Consensus size: 126
15218407 ACAAAGCAGA
15218417 TAATATATTAGGGATTAAGTGCAAAAGTTTACAATTATGAAACTAGATATTTGTTTTGAGTACAG
1 TAATATATTAGGGATTAAGTGCAAAAGTTTACAATTATGAAACTAGATATTTGTTTTGAGTACAG
15218482 ATGTTGTAGTTCTTATCATGTTATCTATTTGACTTTTATTAAAAATTTTAAATAATATTCT
66 ATGTTGTAGTTCTTATCATGTTATCTATTTGACTTTTATTAAAAATTTTAAATAATATTCT
15218543 TAATATATTA-GGATTAAGTGCAAAAGTTTACAATTATGAAACTAGATATTTGTTTTGAGTACAG
1 TAATATATTAGGGATTAAGTGCAAAAGTTTACAATTATGAAACTAGATATTTGTTTTGAGTACAG
*
15218607 ATGTTGTAGTTCTTATCATGTTATCTTTTTGACTTTTATTAAAAATTTTAAATAATATTCT
66 ATGTTGTAGTTCTTATCATGTTATCTATTTGACTTTTATTAAAAATTTTAAATAATATTCT
15218668 TAATATATTA
1 TAATATATTA
15218678 TTAAATTTTA
Statistics
Matches: 134, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
125 124 0.93
126 10 0.07
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (126 bp):
TAATATATTAGGGATTAAGTGCAAAAGTTTACAATTATGAAACTAGATATTTGTTTTGAGTACAG
ATGTTGTAGTTCTTATCATGTTATCTATTTGACTTTTATTAAAAATTTTAAATAATATTCT
Found at i:15219974 original size:3 final size:3
Alignment explanation
Indices: 15219968--15219999 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
15219958 GGAGGAGGAG
15219968 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
15220000 GAAAGCAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:15222722 original size:21 final size:22
Alignment explanation
Indices: 15222677--15222723 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
15222667 ATAAGGTCTA
* * *
15222677 TAGGCCGTTTTTATTTTTTATT
1 TAGGCCGATTTTATATTTTAAT
15222699 TAGGCCGATTTTA-ATTTTAAT
1 TAGGCCGATTTTATATTTTAAT
15222720 TAGG
1 TAGG
15222724 GAAATAGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.21, C:0.09, G:0.17, T:0.53
Consensus pattern (22 bp):
TAGGCCGATTTTATATTTTAAT
Found at i:15228885 original size:22 final size:21
Alignment explanation
Indices: 15228847--15228888 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
15228837 GTAACAATTT
*
15228847 AGATAAGATACAGAACATATC
1 AGATAAGATACAAAACATATC
*
15228868 AGATACAGATGCAAAACATAT
1 AGATA-AGATACAAAACATAT
15228889 TGGAATCAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.19
Consensus pattern (21 bp):
AGATAAGATACAAAACATATC
Found at i:15241045 original size:31 final size:27
Alignment explanation
Indices: 15241005--15241076 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 27
15240995 GTATCACTAC
*
15241005 AGAACAACTCTTATTTGGAACAACTATGTTG
1 AGAATAACTCTTATTTGGAAC-AC---GTTG
*
15241036 AGAATAACTCATATTTGGAACACGTTG
1 AGAATAACTCTTATTTGGAACACGTTG
15241063 -GAATAACTCTTATT
1 AGAATAACTCTTATT
15241077 CAAAGCAACC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
26 13 0.34
27 4 0.11
30 2 0.05
31 19 0.50
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
AGAATAACTCTTATTTGGAACACGTTG
Found at i:15241290 original size:28 final size:28
Alignment explanation
Indices: 15241250--15241306 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
15241240 AATATGAAGA
15241250 TAGTTAATAAGTTTTCCTCTTAACTTTT
1 TAGTTAATAAGTTTTCCTCTTAACTTTT
*
15241278 TAGTTAATAAGTTTTTCTCTTAACTTTT
1 TAGTTAATAAGTTTTCCTCTTAACTTTT
15241306 T
1 T
15241307 CCTGAAACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.56
Consensus pattern (28 bp):
TAGTTAATAAGTTTTCCTCTTAACTTTT
Found at i:15246277 original size:4 final size:4
Alignment explanation
Indices: 15246268--15246337 Score: 140
Period size: 4 Copynumber: 17.5 Consensus size: 4
15246258 GAGGCACCAA
15246268 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
15246316 TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TA
15246338 AGTCCCGCTG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 66 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:15247100 original size:11 final size:11
Alignment explanation
Indices: 15247086--15247126 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
15247076 TAAACTCTCT
15247086 TTAAAGTTTTG
1 TTAAAGTTTTG
*
15247097 TTAAAATTTT-
1 TTAAAGTTTTG
*
15247107 TTAAGGTTTTG
1 TTAAAGTTTTG
15247118 TT-AAGTTTT
1 TTAAAGTTTT
15247127 CATGAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
10 14 0.56
11 11 0.44
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.59
Consensus pattern (11 bp):
TTAAAGTTTTG
Found at i:15250734 original size:2 final size:2
Alignment explanation
Indices: 15250721--15250752 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
15250711 TTTTAGTATT
*
15250721 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15250753 CTTGATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:15252087 original size:41 final size:41
Alignment explanation
Indices: 15252035--15252180 Score: 175
Period size: 41 Copynumber: 3.6 Consensus size: 41
15252025 ACAAATTCAA
* * *
15252035 CGGCACATAGCCCGCTAGACTTATAGCCTGATTCAGATCAC
1 CGGCACGTAGCCTGCTAGACTTATAACCTGATTCAGATCAC
* **
15252076 CGGTACGTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACGTAGCCTGCTAGACTTATAACCTGATTCAGATCAC
* * **
15252117 CGGCACGCAGCCTACTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACGTAGCCTGCTAGACTTATAACCTGATTCAGATCAC
* **
15252158 TGGCAATTAGCCTGCTAGACTTA
1 CGGCACGTAGCCTGCTAGACTTA
15252181 AAGTCTGAAA
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 89 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (41 bp):
CGGCACGTAGCCTGCTAGACTTATAACCTGATTCAGATCAC
Found at i:15261888 original size:19 final size:19
Alignment explanation
Indices: 15261864--15261902 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
15261854 TATATATTCA
*
15261864 TATAGAATGTCGTAAAATT
1 TATAGAATGACGTAAAATT
*
15261883 TATAGAATGACGTGAAATT
1 TATAGAATGACGTAAAATT
15261902 T
1 T
15261903 GTTTGATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (19 bp):
TATAGAATGACGTAAAATT
Found at i:15274109 original size:28 final size:28
Alignment explanation
Indices: 15274087--15274181 Score: 145
Period size: 28 Copynumber: 3.4 Consensus size: 28
15274077 CTTCATGTAT
*
15274087 GAGTCCGCGTGGACTATCTTTCAAGCAA
1 GAGTCCGCATGGACTATCTTTCAAGCAA
* * * *
15274115 GAGTTCGTATAGACTATCTTTCAACCAA
1 GAGTCCGCATGGACTATCTTTCAAGCAA
15274143 GAGTCCGCATGGACTATCTTTCAAGCAA
1 GAGTCCGCATGGACTATCTTTCAAGCAA
15274171 GAGTCCGCATG
1 GAGTCCGCATG
15274182 AGCTAACTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (28 bp):
GAGTCCGCATGGACTATCTTTCAAGCAA
Found at i:15274398 original size:28 final size:28
Alignment explanation
Indices: 15274339--15274400 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
15274329 AATCTGCCTT
** *
15274339 TATGAATCTGTAACTATGATTCAACATG
1 TATGAATCTGTAACTATGAACCAACATA
* **
15274367 TATGAATCTGTACCTATGAACCCGCATA
1 TATGAATCTGTAACTATGAACCAACATA
15274395 TATGAA
1 TATGAA
15274401 ATCATTTGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (28 bp):
TATGAATCTGTAACTATGAACCAACATA
Found at i:15276158 original size:16 final size:17
Alignment explanation
Indices: 15276132--15276167 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
15276122 TCAGAATCAG
*
15276132 ATTGAGAAAATTATTTA
1 ATTGAGAAAATTAATTA
15276149 ATTG-GAAAATTAATTA
1 ATTGAGAAAATTAATTA
15276165 ATT
1 ATT
15276168 TCTTTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (17 bp):
ATTGAGAAAATTAATTA
Found at i:15283028 original size:43 final size:41
Alignment explanation
Indices: 15282971--15283214 Score: 166
Period size: 43 Copynumber: 5.7 Consensus size: 41
15282961 CATACTGACT
* *
15282971 CATA-AGTGTATCATCGGATGAACCAACACAATTATATTGGTA
1 CATATAGTGCATCATCGGAT-AACCAA-AGAATTATATTGGTA
** * *
15283013 CATATAGTGCATCATCGGATATACTGAAGAATTATACTGGCA
1 CATATAGTGCATCATCGGATA-ACCAAAGAATTATATTGGTA
* * *
15283055 CATACAGTGCATCATCGGATAAACCAAAGTATCTATATTAGTA
1 CATATAGTGCATCATCGGAT-AACCAAAGAAT-TATATTGGTA
* * * * *
15283098 CATATAGTGCATCATTGGATATACCGAAGAAAATATACTGGCA
1 CATATAGTGCATCATCGGATA-ACCAAAG-AATTATATTGGTA
* * * ** * * *
15283141 CACATAGTGTATCATCAGATAAACTGAAGAAAATATATCGGCA
1 CATATAGTGCATCATCGGAT-AACCAAAG-AATTATATTGGTA
* * *
15283184 CACACAGTGCATCATCGGATAAACCGAAGAA
1 CATATAGTGCATCATCGGAT-AACCAAAGAA
15283215 AATATACTGG
Statistics
Matches: 163, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
42 46 0.28
43 115 0.71
44 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (41 bp):
CATATAGTGCATCATCGGATAACCAAAGAATTATATTGGTA
Found at i:15283193 original size:86 final size:86
Alignment explanation
Indices: 15283018--15283336 Score: 363
Period size: 86 Copynumber: 3.7 Consensus size: 86
15283008 TGGTACATAT
* * * * *
15283018 AGTGCATCATCGGATATACTGAAG-AATTATACTGGCACATACAGTGCATCATCGGATAAACCAA
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACACAGTGCATCATCAGATAAACCAA
* ** * * * *
15283082 AGTATCTATATTAGTACATAT
66 AGAAAATATATCAGCACACAC
* * * * **
15283103 AGTGCATCATTGGATATACCGAAGAAAATATACTGGCACACATAGTGTATCATCAGATAAACTGA
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACACAGTGCATCATCAGATAAACCAA
*
15283168 AGAAAATATATCGGCACACAC
66 AGAAAATATATCAGCACACAC
* *
15283189 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACACAATACATCATC-GAATAAACCA
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACACAGTGCATCATCAG-ATAAACCA
*
15283253 AAGAAAATATACCAGCACACAC
65 AAGAAAATATATCAGCACACAC
* * * * * *
15283275 AATGCATCATCAGATAAATCGAAGTAAATATACTAGCACATACAGTGCATCATCAGATAAAC
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACACAGTGCATCATCAGATAAAC
15283337 AGAAGTATAA
Statistics
Matches: 196, Mismatches: 35, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
85 23 0.12
86 172 0.88
87 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (86 bp):
AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACACAGTGCATCATCAGATAAACCAA
AGAAAATATATCAGCACACAC
Found at i:15283215 original size:43 final size:43
Alignment explanation
Indices: 15283018--15283341 Score: 328
Period size: 43 Copynumber: 7.6 Consensus size: 43
15283008 TGGTACATAT
* * * *
15283018 AGTGCATCATCGGATATACTGAAG-AATTATACTGGCACATAC
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACAC
* * ** * * * * *
15283060 AGTGCATCATCGGATAAACCAAAGTATCTATATTAGTACATAT
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACAC
* * *
15283103 AGTGCATCATTGGATATACCGAAGAAAATATACTGGCACACAT
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACAC
* * *
15283146 AGTGTATCATCAGATAAACTGAAGAAAATATA-TCGGCACACAC
1 AGTGCATCATCGGATAAACCGAAGAAAATATACT-GGCACACAC
15283189 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACAC
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACAC
* * * * **
15283232 AATACATCATCGAATAAACCAAAGAAAATATACCAGCACACAC
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACAC
* * * * * *
15283275 AATGCATCATCAGATAAATCGAAGTAAATATACTAGCACATAC
1 AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACAC
* *
15283318 AGTGCATCATCAGATAAACAGAAG
1 AGTGCATCATCGGATAAACCGAAG
15283342 TATAACCTGT
Statistics
Matches: 234, Mismatches: 45, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
42 22 0.09
43 211 0.90
44 1 0.00
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (43 bp):
AGTGCATCATCGGATAAACCGAAGAAAATATACTGGCACACAC
Found at i:15286574 original size:70 final size:69
Alignment explanation
Indices: 15286500--15286752 Score: 292
Period size: 70 Copynumber: 3.6 Consensus size: 69
15286490 GTTTTAGATC
* * ** * * * *
15286500 GGACAACCAATGATTCAAATCACAACATTAGCATTTTAATCATCTAAATACCAT-AATTATGCCC
1 GGACAGCCAATGATTCAAAT-ATAACAACAGCATTTTAATTAGCTAAACACCATGAATT-TGTCC
15286564 TAATTT
64 TAATTT
* * *
15286570 GGACAGCCAATGATTCACATTATAACAACAACATTTTCATTAGCTAAACACCATGAATTTGTCCT
1 GGACAGCCAATGATTCA-AATATAACAACAGCATTTTAATTAGCTAAACACCATGAATTTGTCCT
15286635 AATTT
65 AATTT
* *
15286640 GGACAGCCAATGATTTACAATATAACAACAGCATATTAATTAGCTAAACACCATGAATTTGTCCT
1 GGACAGCCAATGATTCA-AATATAACAACAGCATTTTAATTAGCTAAACACCATGAATTTGTCCT
15286705 AATTT
65 AATTT
* * * * *
15286710 GGATAGCCAATGATTTACAATATAATAGCAGCATATTAATTAG
1 GGACAGCCAATGATTCA-AATATAACAACAGCATTTTAATTAG
15286753 TAATAAATTG
Statistics
Matches: 162, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
70 156 0.96
71 6 0.04
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (69 bp):
GGACAGCCAATGATTCAAATATAACAACAGCATTTTAATTAGCTAAACACCATGAATTTGTCCTA
ATTT
Found at i:15292670 original size:12 final size:12
Alignment explanation
Indices: 15292653--15292696 Score: 88
Period size: 12 Copynumber: 3.7 Consensus size: 12
15292643 TGGCTTCTAT
15292653 GCAGACCATGAA
1 GCAGACCATGAA
15292665 GCAGACCATGAA
1 GCAGACCATGAA
15292677 GCAGACCATGAA
1 GCAGACCATGAA
15292689 GCAGACCA
1 GCAGACCA
15292697 AGCTGCCCGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.41, C:0.27, G:0.25, T:0.07
Consensus pattern (12 bp):
GCAGACCATGAA
Found at i:15296482 original size:16 final size:16
Alignment explanation
Indices: 15296463--15296495 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15296453 TTCATGTTAC
*
15296463 TTTGGTTATCCTTTGT
1 TTTGCTTATCCTTTGT
15296479 TTTGCTTATCCTTTGT
1 TTTGCTTATCCTTTGT
15296495 T
1 T
15296496 ATATTGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.15, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTGCTTATCCTTTGT
Found at i:15298794 original size:47 final size:45
Alignment explanation
Indices: 15298743--15298910 Score: 132
Period size: 47 Copynumber: 3.6 Consensus size: 45
15298733 TATTTAATAT
*
15298743 TAATTATTTTAAATTGTATAAATTCATATAAGAAAAATTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTAT-AA
* * **
15298790 TAATT-TTATGAAA-TTATATATT-AT-T-ATTAAATTATATGTAATAA
1 TAATTATT-TTAAATTTATAAATTCATATAAGAAAATT-TAT-T-ATAA
* * *
15298834 TAATTATTTTAAATTATACAAATTCATATAAGATAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA-TAA
15298881 TAATTATTTTAAATTTTATTAAA-TCATATA
1 TAATTATTTTAAA-TTTA-TAAATTCATATA
15298911 TTTTAATTAA
Statistics
Matches: 95, Mismatches: 13, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 14 0.15
45 12 0.13
46 10 0.11
47 36 0.38
48 9 0.09
49 5 0.05
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAATTTATTATAA
Found at i:15298816 original size:91 final size:91
Alignment explanation
Indices: 15298669--15298876 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
15298659 TTGATTTTAG
* *
15298669 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
15298734 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* * *
15298761 TAAATTCATATAAGAAAAATTATTATCAATAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
15298826 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
15298852 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
15298877 GTTATAATTA
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 89 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:15298837 original size:44 final size:43
Alignment explanation
Indices: 15298690--15298851 Score: 116
Period size: 44 Copynumber: 3.6 Consensus size: 43
15298680 AAGAACATTT
* * *
15298690 TATTATTAAGAATT-TTATGAAATTATATATCATTATTAAATTA
1 TATTAATAATAATTATT-TGAAATTATATATAATTATTAAATTA
* * * *
15298733 TATTTAATATTAATTATTTTAAATTGTATA-AATTCATATAAGA-AA
1 TA-TTAATAATAATTATTTGAAATTATATATAATT-AT-TAA-ATTA
* *
15298778 AATTATTATCAATAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTA--AT-AATAATTATT-TGAAATTATATATAATTATTAAATTA
*
15298824 TATGTAATAATAATTATTTTAAATTATA
1 TAT-TAATAATAATTATTTGAAATTATA
15298852 CAAATTCATA
Statistics
Matches: 91, Mismatches: 15, Indels: 25
0.69 0.11 0.19
Matches are distributed among these distances:
43 5 0.05
44 40 0.44
45 12 0.13
46 11 0.12
47 20 0.22
48 3 0.03
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (43 bp):
TATTAATAATAATTATTTGAAATTATATATAATTATTAAATTA
Found at i:15298851 original size:26 final size:28
Alignment explanation
Indices: 15298689--15298765 Score: 52
Period size: 28 Copynumber: 2.8 Consensus size: 28
15298679 TAAGAACATT
* *
15298689 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
* ** *
15298719 TCATTATTAAATTATATTTAATATTA-A
1 TTATTATTAAATTATATGAAATAATATA
*
15298746 TTATT-TTAAATTGTAT-AAAT
1 TTATTATTAAATTATATGAAAT
15298766 TCATATAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
25 3 0.08
26 10 0.26
27 5 0.13
28 12 0.32
29 1 0.03
30 7 0.18
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:15299047 original size:16 final size:16
Alignment explanation
Indices: 15299026--15299068 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
15299016 TTATTAAATT
15299026 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
15299042 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
15299057 AT-TATGTTAATT
1 ATATATTTTAATT
15299069 TATATTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 16 0.70
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:15299056 original size:12 final size:12
Alignment explanation
Indices: 15299039--15299092 Score: 51
Period size: 12 Copynumber: 4.5 Consensus size: 12
15299029 TATTTTAATT
15299039 ATAATATATTTA
1 ATAATATATTTA
15299051 ATAATAATTATGTTA
1 ATAAT-A-TAT-TTA
*
15299066 AT-TTATATTT-
1 ATAATATATTTA
15299076 -TAATATATTTA
1 ATAATATATTTA
15299087 ATAATA
1 ATAATA
15299093 ATTATGTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
9 1 0.03
10 7 0.21
11 2 0.06
12 13 0.38
13 2 0.06
14 4 0.12
15 5 0.15
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (12 bp):
ATAATATATTTA
Found at i:15299058 original size:21 final size:21
Alignment explanation
Indices: 15299034--15299097 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
15299024 TTATATATTT
15299034 TAATTATAATATATTTAATAA
1 TAATTATAATATATTTAATAA
**
15299055 TAATTATGTTA-ATTT-AT-A
1 TAATTATAATATATTTAATAA
15299073 T--TT-TAATATATTTAATAA
1 TAATTATAATATATTTAATAA
15299091 TAATTAT
1 TAATTAT
15299098 GTTAAATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
15 3 0.09
16 6 0.18
17 2 0.06
18 4 0.12
19 2 0.06
20 6 0.18
21 10 0.30
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TAATTATAATATATTTAATAA
Found at i:15299081 original size:36 final size:36
Alignment explanation
Indices: 15299032--15299113 Score: 139
Period size: 36 Copynumber: 2.3 Consensus size: 36
15299022 AATTATATAT
*
15299032 TTTA-ATTATAATATATTTAATAATAATTATGTTAA
1 TTTATATTTTAATATATTTAATAATAATTATGTTAA
15299067 TTTATATTTTAATATATTTAATAATAATTATGTTAA
1 TTTATATTTTAATATATTTAATAATAATTATGTTAA
*
15299103 ATTATATTTTA
1 TTTATATTTTA
15299114 TAGTACCATA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 4 0.09
36 40 0.91
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (36 bp):
TTTATATTTTAATATATTTAATAATAATTATGTTAA
Found at i:15299177 original size:153 final size:155
Alignment explanation
Indices: 15298921--15299217 Score: 483
Period size: 153 Copynumber: 1.9 Consensus size: 155
15298911 TTTTAATTAA
* * * *
15298921 AATATATTTAATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAA
1 AATATATTTAATAATAATTATTTCAAATTATATTTTATAGTACCATATATTATGATAT-AGTAAA
*
15298986 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTA
65 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTA
15299051 ATAATAATTATGTTAATTTATATTTT
130 ATAATAATTATGTTAATTTATATTTT
*
15299077 AATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTACCATATATTATTATAT-G-AAA
1 AATATATTTAATAATAATTAT-TTCAAATTATATTTTATAGTACCATATATTATGATATAGTAAA
* *
15299139 TTCATATAATAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTA
65 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTA
15299204 ATAATAATTATGTT
130 ATAATAATTATGTT
15299218 TAAATATGAT
Statistics
Matches: 132, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
153 79 0.60
154 1 0.01
156 50 0.38
157 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (155 bp):
AATATATTTAATAATAATTATTTCAAATTATATTTTATAGTACCATATATTATGATATAGTAAAT
TCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
TAATAATTATGTTAATTTATATTTT
Found at i:15299194 original size:18 final size:17
Alignment explanation
Indices: 15299166--15299200 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15299156 ATTATTAAGA
*
15299166 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15299183 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15299201 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15299444 original size:42 final size:41
Alignment explanation
Indices: 15299346--15299446 Score: 107
Period size: 44 Copynumber: 2.4 Consensus size: 41
15299336 TTTTCCATTA
*
15299346 TGCTATTACACCTC--TATTCCATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATATTACATTCAACCAAACACAAGAT
* ***
15299385 TACTATTACGACGCCTCTATATTACATTCAACCAAACAGTTGATT
1 TGCTATTAC-A--CCTCTATATTACATTCAACCAAACACAAGA-T
15299430 TGCTATTACACCTCTAT
1 TGCTATTACACCTCTAT
15299447 TCCATTACAC
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
39 8 0.16
40 1 0.02
42 11 0.22
44 21 0.42
45 9 0.18
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (41 bp):
TGCTATTACACCTCTATATTACATTCAACCAAACACAAGAT
Found at i:15299455 original size:16 final size:16
Alignment explanation
Indices: 15299434--15299514 Score: 91
Period size: 16 Copynumber: 5.4 Consensus size: 16
15299424 TTGATTTGCT
15299434 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
15299450 ATTACACCTCTATT-C
1 ATTACACCTCTATTCC
15299465 ----CACCTCTATTCC
1 ATTACACCTCTATTCC
*
15299477 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
* *
15299493 AATACACCTCTAATCC
1 ATTACACCTCTATTCC
*
15299509 AATACA
1 ATTACA
15299515 GCGAACCAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
11 10 0.17
12 1 0.02
15 1 0.02
16 46 0.79
ACGTcount: A:0.31, C:0.37, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:15299470 original size:27 final size:27
Alignment explanation
Indices: 15299432--15299493 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
15299422 AGTTGATTTG
*
15299432 CTATTACACCTCTATTCCATTACACCT
1 CTATTCCACCTCTATTCCATTACACCT
15299459 CTATTCCACCTCTATTCCATTACACCT
1 CTATTCCACCTCTATTCCATTACACCT
*
15299486 CTAATCCA
1 CTATTCCA
15299494 ATACACCTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.39, G:0.00, T:0.35
Consensus pattern (27 bp):
CTATTCCACCTCTATTCCATTACACCT
Found at i:15305859 original size:16 final size:16
Alignment explanation
Indices: 15305838--15305870 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15305828 GATACAATAT
*
15305838 AACAAAGGATAAGCAA
1 AACAAAGGATAACCAA
15305854 AACAAAGGATAACCAA
1 AACAAAGGATAACCAA
15305870 A
1 A
15305871 GTAACATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.64, C:0.15, G:0.15, T:0.06
Consensus pattern (16 bp):
AACAAAGGATAACCAA
Found at i:15317317 original size:15 final size:14
Alignment explanation
Indices: 15317276--15317317 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
15317266 TAATTTTTAA
15317276 TATTTTATTTTA-T
1 TATTTTATTTTATT
15317289 TATTTTAGTTTTATT
1 TATTTTA-TTTTATT
*
15317304 TCTCTTTATTTTAT
1 TAT-TTTATTTTAT
15317318 AATATTTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 7 0.28
14 5 0.20
15 9 0.36
16 4 0.16
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (14 bp):
TATTTTATTTTATT
Found at i:15330101 original size:2 final size:2
Alignment explanation
Indices: 15330094--15330118 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15330084 AACAGAGGGT
15330094 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
15330119 AGGAGCAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15334818 original size:31 final size:31
Alignment explanation
Indices: 15334771--15334829 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
15334761 ATCAACACTA
* * *
15334771 TTGTTATATACTTTTATTATTTTAGTCATTG
1 TTGTTACATACATTTATCATTTTAGTCATTG
15334802 TTGTTACATACATTTATCATTTTAGTCA
1 TTGTTACATACATTTATCATTTTAGTCA
15334830 CCCGTCATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.56
Consensus pattern (31 bp):
TTGTTACATACATTTATCATTTTAGTCATTG
Found at i:15335187 original size:12 final size:12
Alignment explanation
Indices: 15335170--15335199 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15335160 TCCTCTTACC
*
15335170 AGAAAAAGGAAA
1 AGAAAAAAGAAA
15335182 AGAAAAAAGAAA
1 AGAAAAAAGAAA
15335194 AGAAAA
1 AGAAAA
15335200 GATAAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (12 bp):
AGAAAAAAGAAA
Found at i:15336714 original size:20 final size:20
Alignment explanation
Indices: 15336689--15336748 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
15336679 AATTTATTTC
*
15336689 ATCTTGGACTTTTCTAAGTG
1 ATCTTGGACTTTTCTAAGTA
* *
15336709 ATCTTGTA-TTATTCTAAATA
1 ATCTTGGACTT-TTCTAAGTA
* *
15336729 ATCTTCGACTTTTTTAAGTA
1 ATCTTGGACTTTTCTAAGTA
15336749 TGTTTTATCA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.48
Consensus pattern (20 bp):
ATCTTGGACTTTTCTAAGTA
Found at i:15356889 original size:57 final size:57
Alignment explanation
Indices: 15356820--15356932 Score: 140
Period size: 61 Copynumber: 1.9 Consensus size: 57
15356810 GTACTAAGAT
* *
15356820 TTTGCAAATAAAT-AGT-GATTCCAATACAATGCAGTTAGCTACCAAAAAGGTTAATA
1 TTTGCAAATAAATGAGTGGATTCCAATACAATGCACTTAGCAACC-AAAAGGTTAATA
* *
15356876 TTTGACAAATAAATGGGTGGAGATTCTAATACAATGCACTTAGCAACCAAAAGGTTA
1 TTTG-CAAATAAATGAGT-G-GATTCCAATACAATGCACTTAGCAACCAAAAGGTTA
15356933 TGACTTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
56 4 0.08
57 9 0.19
58 2 0.04
60 9 0.19
61 24 0.50
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (57 bp):
TTTGCAAATAAATGAGTGGATTCCAATACAATGCACTTAGCAACCAAAAGGTTAATA
Found at i:15356890 original size:112 final size:110
Alignment explanation
Indices: 15356669--15356872 Score: 241
Period size: 112 Copynumber: 1.8 Consensus size: 110
15356659 TTGATACACT
* * *
15356669 AATACAATTACCATGGTGATTCCAATACAATACTAAGATTTTGCAAATGAATGGTGGTGATTCCG
1 AATACAATTACCATGGTGATTCCAATACAATACTAAGATTTTGCAAATGAA-GATAGTGATTCCA
** * * * * *
15356734 ATGTAGTGCACTTAGCCACTAAAATGTTATGAATTTTCTAAAATGTC
65 ATACAATGCACTTAGCCACAAAAAGGTTAT-AATTTACAAAAATGTC
* *
15356781 AATACAATTACCATGGTGATTCTAATACAGTACTAAGATTTTGCAAAT-AA-ATAGTGATTCCAA
1 AATACAATTACCATGGTGATTCCAATACAATACTAAGATTTTGCAAATGAAGATAGTGATTCCAA
* *
15356844 TACAATGCAGTTAGCTACCAAAAAGGTTA
66 TACAATGCACTTAGCCA-CAAAAAGGTTA
15356873 ATATTTGACA
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
109 22 0.28
110 9 0.11
111 2 0.03
112 46 0.58
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (110 bp):
AATACAATTACCATGGTGATTCCAATACAATACTAAGATTTTGCAAATGAAGATAGTGATTCCAA
TACAATGCACTTAGCCACAAAAAGGTTATAATTTACAAAAATGTC
Found at i:15360718 original size:31 final size:29
Alignment explanation
Indices: 15360683--15360765 Score: 78
Period size: 29 Copynumber: 2.8 Consensus size: 29
15360673 ATAATATGAA
*
15360683 ATTATAAATAAAATTTGATTTAATGTCTAAT
1 ATTATAAATAAAATTTGATTT--TGTATAAT
* * *
15360714 ATTATATATGAATTTTGATTTTGTATAAT
1 ATTATAAATAAAATTTGATTTTGTATAAT
* *
15360743 TTTATAAGTGAAAATTT-ATTTTG
1 ATTATAAAT-AAAATTTGATTTTG
15360766 ATTCAATTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
29 19 0.45
30 5 0.12
31 18 0.43
ACGTcount: A:0.39, C:0.01, G:0.10, T:0.51
Consensus pattern (29 bp):
ATTATAAATAAAATTTGATTTTGTATAAT
Found at i:15376099 original size:30 final size:30
Alignment explanation
Indices: 15376065--15376140 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 30
15376055 ACAAAAATAC
15376065 AAATTACATTTT-AGCCCCTAAACTTTTCAA
1 AAATTACATTTTGA-CCCCTAAACTTTTCAA
* *
15376095 AAATTACATTTTGACCCCTAACCTTTTCTA
1 AAATTACATTTTGACCCCTAAACTTTTCAA
* *
15376125 AATTTACATATTGACC
1 AAATTACATTTTGACC
15376141 TTTAATATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 40 0.98
31 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (30 bp):
AAATTACATTTTGACCCCTAAACTTTTCAA
Found at i:15376780 original size:15 final size:15
Alignment explanation
Indices: 15376756--15376805 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
15376746 CCAGAAGAAG
15376756 AAGAAA-AAGAAAAA
1 AAGAAAGAAGAAAAA
15376770 AAGAAAGAAGAAAAA
1 AAGAAAGAAGAAAAA
*
15376785 GAGAGAAG-AGAAAAA
1 AAGA-AAGAAGAAAAA
*
15376800 GAGAAA
1 AAGAAA
15376806 AAATATCACA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
14 8 0.24
15 22 0.67
16 3 0.09
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AAGAAAGAAGAAAAA
Found at i:15376785 original size:13 final size:13
Alignment explanation
Indices: 15376750--15376798 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
15376740 GTTCGGCCAG
*
15376750 AAGAAGAAGAA-A
1 AAGAAGAAAAAGA
15376762 AAGAA-AAAAAGA
1 AAGAAGAAAAAGA
15376774 AAGAAGAAAAAGA
1 AAGAAGAAAAAGA
*
15376787 GAGAAGAGAAAA
1 AAGAAGA-AAAA
15376799 AGAGAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 4 0.12
12 11 0.34
13 13 0.41
14 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAAAGA
Found at i:15376801 original size:21 final size:20
Alignment explanation
Indices: 15376750--15376806 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
15376740 GTTCGGCCAG
*
15376750 AAGAAGAAGAAAAAGAAAAA
1 AAGAAAAAGAAAAAGAAAAA
*
15376770 AAGAAAGAAGAAAAAGAGAGAA
1 AAGAAA-AAGAAAAAGA-AAAA
*
15376792 GAGAAAAAGAGAAAA
1 AAGAAAAAGA-AAAA
15376807 AATATCACAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 5 0.16
21 14 0.45
22 12 0.39
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (20 bp):
AAGAAAAAGAAAAAGAAAAA
Found at i:15376802 original size:13 final size:12
Alignment explanation
Indices: 15376751--15376808 Score: 50
Period size: 13 Copynumber: 4.8 Consensus size: 12
15376741 TTCGGCCAGA
15376751 AGAAGAAGAAAA-
1 AGAAGAA-AAAAG
*
15376763 AGAA-AAAAAGAA
1 AGAAGAAAAA-AG
15376775 AGAAGAAAAAGAG
1 AGAAGAAAAA-AG
15376788 AGAAGAGAAAAAG
1 AGAAGA-AAAAAG
15376801 AGAA-AAAA
1 AGAAGAAAA
15376809 TATCACAGTC
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
10 3 0.07
11 6 0.15
12 9 0.22
13 19 0.46
14 4 0.10
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAGAAAAAAG
Found at i:15376805 original size:30 final size:27
Alignment explanation
Indices: 15376748--15376801 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
15376738 GAGTTCGGCC
*
15376748 AGAAGAAGAAGAAAAAGAAAAAAAGAA
1 AGAAGAAAAAGAAAAAGAAAAAAAGAA
* *
15376775 AGAAGAAAAAGAGAGAAGAGAAAAAGA
1 AGAAGAAAAAGA-AAAAGAAAAAAAGA
15376802 GAAAAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (27 bp):
AGAAGAAAAAGAAAAAGAAAAAAAGAA
Found at i:15376906 original size:32 final size:33
Alignment explanation
Indices: 15376865--15376930 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 33
15376855 CAGCAGCCCC
*
15376865 AAAACAGCAGGCTTGTC-CAG-AAAAAAAACAAA
1 AAAACAGCAGGCCTG-CACAGAAAAAAAAACAAA
*
15376897 AAAATAGCAGGCCTGCAGCAGAAAAAAAAACAAA
1 AAAACAGCAGGCCTGCA-CAGAAAAAAAAACAAA
15376931 GCAGGCCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 1 0.03
32 13 0.45
33 3 0.10
34 12 0.41
ACGTcount: A:0.58, C:0.18, G:0.17, T:0.08
Consensus pattern (33 bp):
AAAACAGCAGGCCTGCACAGAAAAAAAAACAAA
Found at i:15376998 original size:20 final size:20
Alignment explanation
Indices: 15376975--15377012 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15376965 GCAGCTCTAG
15376975 CAGGCCAGCTCCAGCAGCCC
1 CAGGCCAGCTCCAGCAGCCC
* *
15376995 CAGGCCCGTTCCAGCAGC
1 CAGGCCAGCTCCAGCAGC
15377013 AGTCTAGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.47, G:0.26, T:0.08
Consensus pattern (20 bp):
CAGGCCAGCTCCAGCAGCCC
Found at i:15377127 original size:10 final size:9
Alignment explanation
Indices: 15377099--15377135 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
15377089 CCCAATCTGT
15377099 AGAAAAAAA
1 AGAAAAAAA
*
15377108 AGAAGAAAA
1 AGAAAAAAA
15377117 AGAAAAGAAA
1 AGAAAA-AAA
15377127 AGAAAAAAA
1 AGAAAAAAA
15377136 CAAAAAAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:15377141 original size:19 final size:18
Alignment explanation
Indices: 15377101--15377142 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
15377091 CAATCTGTAG
15377101 AAAAAAAAGAAGAAAAAGA
1 AAAAAAAAGAAGAAAAA-A
*
15377120 AAAGAAAAGAA-AAAAACA
1 AAAAAAAAGAAGAAAAA-A
15377138 AAAAA
1 AAAAA
15377143 GTCCCGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.86, C:0.02, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAAAAAAGAAGAAAAAA
Found at i:15377668 original size:36 final size:34
Alignment explanation
Indices: 15377626--15377969 Score: 169
Period size: 39 Copynumber: 9.3 Consensus size: 34
15377616 CGATACGTCT
*
15377626 TTTCAAAAATTTTCGTGTTTAAAAAATTTCTTGTG
1 TTTCAAAAATTTTCGTGTTTAAAAAATTT-TCGTG
*
15377661 TTTTCAAAAAAATTCTT-GTGTTT-AAAAATTTTCGTA
1 -TTTC--AAAAATT-TTCGTGTTTAAAAAATTTTCGTG
* * *
15377697 TTTCAAAACTTTTCATGTTTTCAAAAAATTCTCGTG
1 TTTCAAAAATTTTCGTG-TTT-AAAAAATTTTCGTG
* *
15377733 TTT-AAAAATTTTTTGCGT-TTTCAAAAATTTTTAGTG
1 TTTCAAAAA--TTTT-CGTGTTT-AAAAAATTTTCGTG
* * *
15377769 TTTCAAAAATTTTCGCGTTTTCAAAATAAAAATTTCATG
1 TTTCAAAAATTTTCGTG-TTT---AA-AAAATTTTCGTG
*
15377808 TTTCAAAGAA-TTTCGTGTTTTCAAAAAAAAGTTCTCGTG
1 TTTCAAA-AATTTTCGTG-TTT---AAAAAA-TTTTCGTG
** *
15377847 TTT-AAAAATTTTCGTGTTTTCAAAAAAAAAAGTTCTTG
1 TTTCAAAAATTTTCGTG-TTT----AAAAAATTTTCGTG
* * *
15377885 TTTCAAAAGTTTTCGTGTTTTCAAAAAAGTTTAGTG
1 TTTCAAAAATTTTCGTG-TTT-AAAAAATTTTCGTG
* * *
15377921 TTTCCAAAAAAATTCTCGTGTTTCAAAAATTTCCGTG
1 TTT-C--AAAAATTTTCGTGTTTAAAAAATTTTCGTG
15377958 TTTTCAAAAATT
1 -TTTCAAAAATT
15377970 ATTATGGTGT
Statistics
Matches: 245, Mismatches: 38, Indels: 51
0.73 0.11 0.15
Matches are distributed among these distances:
32 2 0.01
33 8 0.03
34 5 0.02
35 19 0.08
36 55 0.22
37 31 0.13
38 48 0.20
39 75 0.31
40 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (34 bp):
TTTCAAAAATTTTCGTGTTTAAAAAATTTTCGTG
Found at i:15377781 original size:18 final size:18
Alignment explanation
Indices: 15377626--15378018 Score: 154
Period size: 18 Copynumber: 21.3 Consensus size: 18
15377616 CGATACGTCT
15377626 TTTCAAAAA-TTTTCGTG
1 TTTCAAAAATTTTTCGTG
*
15377643 TTTAAAAAATTTCTT-GTG
1 TTTCAAAAATTT-TTCGTG
*
15377661 TTTTCAAAAAAATTCTT-GTG
1 -TTTC--AAAAATTTTTCGTG
*
15377681 TTT-AAAAA-TTTTCGTA
1 TTTCAAAAATTTTTCGTG
* *
15377697 TTTC-AAAACTTTTCATG
1 TTTCAAAAATTTTTCGTG
* *
15377714 TTTTCAAAAAATTCTCGTG
1 -TTTCAAAAATTTTTCGTG
15377733 TTT-AAAAATTTTTTGCGT-
1 TTTCAAAAA-TTTTT-CGTG
*
15377751 TTTCAAAAATTTTTAGTG
1 TTTCAAAAATTTTTCGTG
*
15377769 TTTCAAAAA-TTTTCGCG
1 TTTCAAAAATTTTTCGTG
** *
15377786 TTTTCAAAATAAAAATTTCATG
1 -TTTC--AA-AAATTTTTCGTG
15377808 TTTCAAAGAA--TTTCGTG
1 TTTCAAA-AATTTTTCGTG
* *
15377825 TTTTCAAAAAAAAGTTCTCGTG
1 -TTTC---AAAAATTTTTCGTG
15377847 TTT-AAAAA-TTTTCGTG
1 TTTCAAAAATTTTTCGTG
*** *
15377863 TTTTCAAAAAAAAAAGTTCTTG
1 -TTTC---AAAAATTTTTCGTG
*
15377885 TTTC-AAAAGTTTTCGTG
1 TTTCAAAAATTTTTCGTG
** *
15377902 TTTTCAAAAAAGTTTAGTG
1 -TTTCAAAAATTTTTCGTG
* *
15377921 TTTCCAAAAAAATTCTCGTG
1 TTT-C-AAAAATTTTTCGTG
*
15377941 TTTCAAAAA-TTTCCGTG
1 TTTCAAAAATTTTTCGTG
*
15377958 TTTTCAAAAATTATTATGGTG
1 -TTTCAAAAATT-TT-TCGTG
*
15377979 TTTCAAAAA--TCTCGTG
1 TTTCAAAAATTTTTCGTG
* ** *
15377995 TTTTAAAAAAATATCGTG
1 TTTCAAAAATTTTTCGTG
15378013 TTTCAA
1 TTTCAA
15378019 TCGGATCACG
Statistics
Matches: 291, Mismatches: 43, Indels: 83
0.70 0.10 0.20
Matches are distributed among these distances:
15 3 0.01
16 33 0.11
17 57 0.20
18 73 0.25
19 43 0.15
20 34 0.12
21 32 0.11
22 16 0.05
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (18 bp):
TTTCAAAAATTTTTCGTG
Found at i:15377822 original size:39 final size:38
Alignment explanation
Indices: 15377697--15377912 Score: 189
Period size: 39 Copynumber: 5.7 Consensus size: 38
15377687 AATTTTCGTA
* * *
15377697 TTTCAAAACTTTTCATGTTTTC---AAAAAATTCTCGTG
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAAATT-TCATG
* * * *
15377733 TTT-AAAAATTTTTTGCGTTTTC---AAAAATTTTTAGTG
1 TTTCAAAAA-TTTTCGTGTTTTCAAAAAAAAATTTCA-TG
*
15377769 TTTCAAAAATTTTCGCGTTTTCAAAATAAAAATTTCATG
1 TTTCAAAAATTTTCGTGTTTTCAAAA-AAAAATTTCATG
* *
15377808 TTTCAAAGAA-TTTCGTGTTTTCAAAAAAAAGTTCTCGTG
1 TTTCAAA-AATTTTCGTGTTTTCAAAAAAAAATT-TCATG
* *
15377847 TTT-AAAAATTTTCGTGTTTTCAAAAAAAAAAGTTCTTG
1 TTTCAAAAATTTTCGTGTTTTC-AAAAAAAAATTTCATG
*
15377885 TTTCAAAAGTTTTCGTGTTTTCAAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAA
15377913 GTTTAGTGTT
Statistics
Matches: 151, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
35 5 0.03
36 37 0.25
37 7 0.05
38 34 0.23
39 58 0.38
40 10 0.07
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (38 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAAAATTTCATG
Found at i:15377931 original size:77 final size:75
Alignment explanation
Indices: 15377731--15377949 Score: 237
Period size: 77 Copynumber: 2.9 Consensus size: 75
15377721 AAAATTCTCG
* * * * ** * *
15377731 TGTTTAAAAATTTTTTGCGTTTTCAAAAATTTTTAGTGTTTCAAAAATTTTCGCGTTTTCAAAAT
1 TGTTTCAAAAGTTTTCGTGTTTTCAAAAAAGTTTAGTGTTTCAAAAATTTTCGTGTTTTCAAAAA
*
15377796 AAAAATTTCA
66 AAAAAGTTCA
* *
15377806 TGTTTC-AAAGAATTTCGTGTTTTCAAAAAAAAGTTCTCGTGTTT-AAAAATTTTCGTGTTTTCA
1 TGTTTCAAAAG-TTTTCGTGTTTTC--AAAAAAGTT-TAGTGTTTCAAAAATTTTCGTGTTTTCA
*
15377869 AAAAAAAAAGTTCT
62 AAAAAAAAAGTTCA
*
15377883 TGTTTCAAAAGTTTTCGTGTTTTCAAAAAAGTTTAGTGTTTCCAAAAAAATTCTCGTG-TTTCAA
1 TGTTTCAAAAGTTTTCGTGTTTTCAAAAAAGTTTAGTGTTT-C--AAAAATTTTCGTGTTTTCAA
15377947 AAA
63 AAA
15377950 TTTCCGTGTT
Statistics
Matches: 120, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
74 10 0.08
75 24 0.20
77 63 0.52
78 23 0.19
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (75 bp):
TGTTTCAAAAGTTTTCGTGTTTTCAAAAAAGTTTAGTGTTTCAAAAATTTTCGTGTTTTCAAAAA
AAAAAGTTCA
Found at i:15377949 original size:37 final size:35
Alignment explanation
Indices: 15377897--15378018 Score: 120
Period size: 38 Copynumber: 3.3 Consensus size: 35
15377887 TCAAAAGTTT
* *
15377897 TCGTGTTTTCAAAAAAGTTTAGTGTTTCCAAAAAAATTC
1 TCGTG-TTTC-AAAAA-TTTCGTGTTT-CAAAAAAATTA
*
15377936 TCGTGTTTCAAAAATTTCCGTGTTTTCAAAAATTATTA
1 TCGTGTTTCAAAAATTT-CGTG-TTTCAAAAA-AATTA
* * *
15377974 TGGTGTTTCAAAAATCTCGTGTTTTAAAAAAA-TA
1 TCGTGTTTCAAAAATTTCGTGTTTCAAAAAAATTA
15378008 TCGTGTTTCAA
1 TCGTGTTTCAA
15378019 TCGGATCACG
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
34 12 0.17
35 1 0.01
36 11 0.15
37 18 0.25
38 25 0.35
39 5 0.07
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (35 bp):
TCGTGTTTCAAAAATTTCGTGTTTCAAAAAAATTA
Found at i:15377987 original size:56 final size:54
Alignment explanation
Indices: 15377883--15378003 Score: 140
Period size: 56 Copynumber: 2.2 Consensus size: 54
15377873 AAAAAGTTCT
* *
15377883 TGTTTCAAAAGTTTTCGTGTTTTCAAAAAAGTTTAGTGTTTCCAAAAAAATTCTCG
1 TGTTTCAAAAATTTCCGTGTTTTCAAAAAAGTTTAGTGTTTCC-AAAAAA-TCTCG
*
15377939 TGTTTCAAAAATTTCCGTGTTTTCAAAAATTA-TTATGGTGTTT-C-AAAAATCTCG
1 TGTTTCAAAAATTTCCGTGTTTTCAAAAA--AGTT-TAGTGTTTCCAAAAAATCTCG
*
15377993 TGTTTTAAAAA
1 TGTTTCAAAAA
15378004 AATATCGTGT
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
54 15 0.26
55 5 0.09
56 27 0.47
57 3 0.05
58 8 0.14
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (54 bp):
TGTTTCAAAAATTTCCGTGTTTTCAAAAAAGTTTAGTGTTTCCAAAAAATCTCG
Found at i:15379069 original size:4 final size:4
Alignment explanation
Indices: 15379060--15379084 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15379050 CGTTCATTGG
15379060 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
15379085 GCATGTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:15384044 original size:75 final size:75
Alignment explanation
Indices: 15383920--15384599 Score: 946
Period size: 75 Copynumber: 9.1 Consensus size: 75
15383910 AGAATTATAT
* *
15383920 TTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGGTCAC
1 TTTTC-ATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCAC
15383985 ATCCTGAGGTA
65 ATCCTGAGGTA
*
15383996 TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTTGGGTCACA
1 TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
15384061 TCCTGAGGTA
66 TCCTGAGGTA
*
15384071 TTTTCATTTCTGTTTTTCAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
1 TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
*
15384136 TCCTGAAGTA
66 TCCTGAGGTA
* *
15384146 TTTTCATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGTCACA
1 TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
15384211 TCCTGAGGTA
66 TCCTGAGGTA
*
15384221 TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC-
1 TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
*
15384285 -GCTGAGGTA
66 TCCTGAGGTA
** *
15384294 TTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTC-ATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCA
15384359 CA--CTGAGGTA
64 CATCCTGAGGTA
* * * * *
15384369 TTTTCAATTTATGTTTTTCAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCATCGGGCTGC
1 TTTTC-ATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGG-T-C
15384434 AC-TCC-GAGGTA
63 ACATCCTGAGGTA
* * * * *
15384445 TTTTTAATTTC--TTTTTAAAAAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCTCGGGTCAC
1 -TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCAC
*
15384508 ATGCTGAGGTATA
65 ATCCTGAGG--TA
* * * * * *
15384521 TTTTAATTTCTATTTTCCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCATTGGGTCATA
1 TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
15384586 TGCC-GAGGTA
66 T-CCTGAGGTA
15384596 TTTT
1 TTTT
15384600 TCAAAGGTCA
Statistics
Matches: 549, Mismatches: 40, Indels: 31
0.89 0.06 0.05
Matches are distributed among these distances:
72 3 0.01
73 16 0.03
74 96 0.17
75 358 0.65
76 20 0.04
77 55 0.10
78 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (75 bp):
TTTTCATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
TCCTGAGGTA
Found at i:15384985 original size:30 final size:30
Alignment explanation
Indices: 15384951--15385028 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
15384941 ACAAAAATAC
*
15384951 AAATTACATTTT-AGCCCCTAAACTTTTCAA
1 AAATTACATTTTGA-CCCCCAAACTTTTCAA
* *
15384981 AAATTACATTTTGACCCCCAACCTTTTCTA
1 AAATTACATTTTGACCCCCAAACTTTTCAA
* *
15385011 AATTTACATATTGACCCC
1 AAATTACATTTTGACCCC
15385029 TAATATTTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
30 41 0.98
31 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (30 bp):
AAATTACATTTTGACCCCCAAACTTTTCAA
Found at i:15385043 original size:30 final size:30
Alignment explanation
Indices: 15384974--15385044 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 30
15384964 GCCCCTAAAC
* * * *
15384974 TTTTCAAAAATTACATTTTGACCCCCAACC
1 TTTTCTAAATTTACATATTGACCCCCAACA
* *
15385004 TTTTCTAAATTTACATATTGACCCCTAATA
1 TTTTCTAAATTTACATATTGACCCCCAACA
*
15385034 TTTTGTAAATT
1 TTTTCTAAATT
15385045 ATATTTGGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.42
Consensus pattern (30 bp):
TTTTCTAAATTTACATATTGACCCCCAACA
Found at i:15385441 original size:14 final size:14
Alignment explanation
Indices: 15385406--15385450 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
15385396 CGATCCCGCA
*
15385406 ACCACCATCGTCGC
1 ACCACCACCGTCGC
*
15385420 ACCGCCACCGT-GAC
1 ACCACCACCGTCG-C
15385434 ACCACCACCGTCGC
1 ACCACCACCGTCGC
15385448 ACC
1 ACC
15385451 TACACAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 1 0.04
14 24 0.92
15 1 0.04
ACGTcount: A:0.22, C:0.53, G:0.16, T:0.09
Consensus pattern (14 bp):
ACCACCACCGTCGC
Found at i:15385651 original size:13 final size:13
Alignment explanation
Indices: 15385624--15385686 Score: 58
Period size: 13 Copynumber: 4.8 Consensus size: 13
15385614 CGGCCCGAAG
*
15385624 AAGAAGAAAAA-A
1 AAGAAAAAAAAGA
15385636 AAGAAAAAAAAGA
1 AAGAAAAAAAAGA
15385649 AAGAAGAAAAAGAGA
1 AAGAA-AAAAA-AGA
*
15385664 CAAG-AAAAAGAGA
1 -AAGAAAAAAAAGA
*
15385677 GAGAAAAAAA
1 AAGAAAAAAA
15385687 TATCATAGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
12 12 0.29
13 14 0.33
14 9 0.21
15 4 0.10
16 3 0.07
ACGTcount: A:0.78, C:0.02, G:0.21, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAAGA
Found at i:15385654 original size:25 final size:27
Alignment explanation
Indices: 15385624--15385686 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 27
15385614 CGGCCCGAAG
15385624 AAGAAGAAAAAAAAGA-AA-AAAAAGA
1 AAGAAGAAAAAAAAGACAAGAAAAAGA
*
15385649 AAGAAG-AAAAAGAGACAAGAAAAAGA
1 AAGAAGAAAAAAAAGACAAGAAAAAGA
*
15385675 GAG-AGAAAAAAA
1 AAGAAGAAAAAAA
15385687 TATCATAGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 8 0.25
25 10 0.31
26 14 0.44
ACGTcount: A:0.78, C:0.02, G:0.21, T:0.00
Consensus pattern (27 bp):
AAGAAGAAAAAAAAGACAAGAAAAAGA
Found at i:15385855 original size:17 final size:17
Alignment explanation
Indices: 15385835--15385900 Score: 51
Period size: 20 Copynumber: 3.5 Consensus size: 17
15385825 CCAGCAGCTC
*
15385835 CAGCAGGCCAGCTCTAG
1 CAGCAGGCCAGCTCCAG
* *
15385852 CAGCCCCAGGCCTGTTCCAG
1 CAG---CAGGCCAGCTCCAG
15385872 CAGCAGGCCAGCATCCAG
1 CAGCAGGCCAGC-TCCAG
15385890 TCTAGCAGGCC
1 -C-AGCAGGCC
15385901 TAGTCCGCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
17 10 0.26
18 5 0.13
19 1 0.03
20 22 0.58
ACGTcount: A:0.21, C:0.39, G:0.27, T:0.12
Consensus pattern (17 bp):
CAGCAGGCCAGCTCCAG
Found at i:15386579 original size:16 final size:17
Alignment explanation
Indices: 15386558--15386856 Score: 135
Period size: 17 Copynumber: 16.3 Consensus size: 17
15386548 GTGTTTTCAA
15386558 AAAAATTCTT-GTGTTT-
1 AAAAATT-TTCGTGTTTC
*
15386574 AAAAATTTTCGTATTTC
1 AAAAATTTTCGTGTTTC
* *
15386591 AAAACTTTTCATGTTTTC
1 AAAAATTTTCGTG-TTTC
15386609 AAAAAATTCTT-GTGTTT-
1 -AAAAATT-TTCGTGTTTC
*
15386626 AAAAATTTTTCGCGTTTTC
1 AAAAA-TTTTCGTG-TTTC
*
15386645 AAAAAATTTTTGGTGTTTC
1 -AAAAA-TTTTCGTGTTTC
15386664 AAAAATTTTCGCAT-TTTC
1 AAAAATTTTCG--TGTTTC
*
15386682 AAAATTTTTTTCGTGTTTC
1 AAAA--ATTTTCGTGTTTC
15386701 AAAGAA-TTTCGTGTTTTC
1 AAA-AATTTTCGTG-TTTC
** *
15386719 AAAAAAAAAAAGTTCTTGTTTC
1 -----AAAAATTTTCGTGTTTC
*
15386741 AAAAGTTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* *
15386759 AAAAAAGTTTAGTGTTTCC
1 -AAAAATTTTCGTGTTT-C
*
15386778 AAAAAAATTCTCGTGTTTC
1 --AAAAATTTTCGTGTTTC
*
15386797 AAAAATTTCCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
*
15386815 AGAAAATTATTATGGTGTTTC
1 A-AAAA-T-TT-TCGTGTTTC
* *
15386836 AAAAA-TCTCGTGTTTT
1 AAAAATTTTCGTGTTTC
15386852 AAAAA
1 AAAAA
15386857 AAATATCATG
Statistics
Matches: 220, Mismatches: 31, Indels: 64
0.70 0.10 0.20
Matches are distributed among these distances:
15 2 0.01
16 31 0.14
17 47 0.21
18 40 0.18
19 36 0.16
20 40 0.18
21 7 0.03
22 9 0.04
23 8 0.04
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:15386648 original size:18 final size:18
Alignment explanation
Indices: 15386627--15386722 Score: 72
Period size: 18 Copynumber: 5.2 Consensus size: 18
15386617 CTTGTGTTTA
15386627 AAAATTTTTCGCGTTTTC
1 AAAATTTTTCGCGTTTTC
15386645 AAAAAATTTTT-G-GTGTTTC
1 --AAAATTTTTCGCGT-TTTC
* *
15386664 AAAAATTTTCGCATTTTC
1 AAAATTTTTCGCGTTTTC
**
15386682 AAAATTTTTTTCGTGTTTC
1 AAAATTTTTCGCGT-TTTC
* *
15386701 AAAGA-ATTTCGTGTTTTC
1 AAA-ATTTTTCGCGTTTTC
15386719 AAAA
1 AAAA
15386723 AAAAAAAGTT
Statistics
Matches: 61, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
17 9 0.15
18 24 0.39
19 18 0.30
20 10 0.16
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.47
Consensus pattern (18 bp):
AAAATTTTTCGCGTTTTC
Found at i:15386661 original size:37 final size:36
Alignment explanation
Indices: 15386574--15386801 Score: 165
Period size: 37 Copynumber: 6.1 Consensus size: 36
15386564 TCTTGTGTTT
* * * **
15386574 AAAAATTTTCGTATTTCAAAACTTTTCATGTTTTCA
1 AAAAATTTTTGTGTTTCAAAAATTTTCGCGTTTTCA
*
15386610 AAAAATTCTTGTGTTT-AAAAATTTTTCGCGTTTTCA
1 AAAAATTTTTGTGTTTCAAAAA-TTTTCGCGTTTTCA
*
15386646 AAAAATTTTTGGTGTTTCAAAAATTTTCGCATTTTCA
1 AAAAATTTTT-GTGTTTCAAAAATTTTCGCGTTTTCA
** *
15386683 AAATTTTTTTCGTGTTTCAAAGAA-TTTCGTGTTTTCAAAAAA
1 AAAAATTTTT-GTGTTTCAAA-AATTTTCGCGTTTTC-----A
* * * *
15386725 AAAAAGTTCT-TGTTTCAAAAGTTTTCGTGTTTTCA
1 AAAAATTTTTGTGTTTCAAAAATTTTCGCGTTTTCA
* * ** *
15386760 AAAAAGTTTAGTGTTTCCAAAAAAATTCTCGTGTTTCA
1 AAAAATTTTTGTGTTT-CAAAAATTTTCGCGT-TTTCA
15386798 AAAA
1 AAAA
15386802 TTTCCGTGTT
Statistics
Matches: 154, Mismatches: 25, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
35 13 0.08
36 39 0.25
37 57 0.37
38 16 0.10
39 1 0.01
40 21 0.14
42 7 0.05
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (36 bp):
AAAAATTTTTGTGTTTCAAAAATTTTCGCGTTTTCA
Found at i:15386758 original size:18 final size:18
Alignment explanation
Indices: 15386737--15386856 Score: 77
Period size: 19 Copynumber: 6.5 Consensus size: 18
15386727 AAAGTTCTTG
*
15386737 TTTCAAAAGTTTTCGTGT
1 TTTCAAAAATTTTCGTGT
* *
15386755 TTTCAAAAAAGTTTAGTGT
1 TTTC-AAAAATTTTCGTGT
* *
15386774 TTCCAAAAAAATTCTCGTG-
1 TTTC--AAAAATTTTCGTGT
*
15386793 TTTCAAAAATTTCCGTGT
1 TTTCAAAAATTTTCGTGT
*
15386811 TTTCAGAAAATTATT-ATGGT
1 TTTCA-AAAATT-TTCGT-GT
*
15386831 GTTTCAAAAA-TCTCGTGT
1 -TTTCAAAAATTTTCGTGT
15386849 TTT-AAAAA
1 TTTCAAAAA
15386857 AAATATCATG
Statistics
Matches: 80, Mismatches: 14, Indels: 18
0.71 0.12 0.16
Matches are distributed among these distances:
16 5 0.06
17 14 0.17
18 12 0.15
19 26 0.32
20 18 0.22
21 5 0.06
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:15386763 original size:19 final size:19
Alignment explanation
Indices: 15386540--15386822 Score: 159
Period size: 19 Copynumber: 15.2 Consensus size: 19
15386530 TAAAAATAAG
15386540 AATTTCTCGTGTTTTCAAAAA
1 AATTT-TCGTGTTTTC-AAAA
15386561 AATTCTT-GTG-TTT--AAA
1 AATT-TTCGTGTTTTCAAAA
*
15386577 AATTTTCGT-ATTTC-AAA
1 AATTTTCGTGTTTTCAAAA
* *
15386594 ACTTTTCATGTTTTCAAAA
1 AATTTTCGTGTTTTCAAAA
15386613 AATTCTT-GTG-TTT-AAAA
1 AATT-TTCGTGTTTTCAAAA
* *
15386630 ATTTTTCGCGTTTTCAAAA
1 AATTTTCGTGTTTTCAAAA
*
15386649 AATTTTTG-GTGTTTC-AAA
1 AATTTTCGTGT-TTTCAAAA
**
15386667 AATTTTCGCATTTTCAAAA
1 AATTTTCGTGTTTTCAAAA
** *
15386686 TTTTTTTCGTG-TTTCAAAG
1 -AATTTTCGTGTTTTCAAAA
15386705 AA-TTTCGTGTTTTCAAAAAAAA
1 AATTTTCGTGTTTTC----AAAA
** *
15386727 AAAGTTCTTG-TTTC-AAA
1 AATTTTCGTGTTTTCAAAA
*
15386744 AGTTTTCGTGTTTTCAAAA
1 AATTTTCGTGTTTTCAAAA
* * *
15386763 AAGTTTAGTGTTTCCAAAAA
1 AATTTTCGTGTTTTC-AAAA
*
15386783 AATTCTCGTG-TTTC-AAA
1 AATTTTCGTGTTTTCAAAA
* *
15386800 AATTTCCGTGTTTTCAGAA
1 AATTTTCGTGTTTTCAAAA
15386819 AATT
1 AATT
15386823 ATTATGGTGT
Statistics
Matches: 201, Mismatches: 36, Indels: 52
0.70 0.12 0.18
Matches are distributed among these distances:
15 2 0.01
16 14 0.07
17 46 0.23
18 38 0.19
19 59 0.29
20 22 0.11
21 5 0.02
22 10 0.05
23 5 0.02
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (19 bp):
AATTTTCGTGTTTTCAAAA
Found at i:15386840 original size:56 final size:54
Alignment explanation
Indices: 15386735--15386856 Score: 140
Period size: 56 Copynumber: 2.2 Consensus size: 54
15386725 AAAAAGTTCT
* *
15386735 TGTTTCAAAAGTTTTCGTGTTTTCAAAAAAGTTTAGTGTTTCCAAAAAAATTCTCG
1 TGTTTCAAAAATTTCCGTGTTTTCAAAAAAGTTTAGTGTTTCC-AAAAAA-TCTCG
* *
15386791 TGTTTCAAAAATTTCCGTGTTTTCAGAAAATTATTATGGTGTTT-C-AAAAATCTCG
1 TGTTTCAAAAATTTCCGTGTTTTCAAAAAAGT-TTA--GTGTTTCCAAAAAATCTCG
*
15386846 TGTTTTAAAAA
1 TGTTTCAAAAA
15386857 AAATATCATG
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
55 15 0.26
56 33 0.57
57 3 0.05
58 1 0.02
59 6 0.10
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (54 bp):
TGTTTCAAAAATTTCCGTGTTTTCAAAAAAGTTTAGTGTTTCCAAAAAATCTCG
Found at i:15389101 original size:24 final size:23
Alignment explanation
Indices: 15389074--15389121 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
15389064 TAGTTTTAAG
15389074 ATTTATCCTTTTATAAAAAATTTC
1 ATTTAT-CTTTTATAAAAAATTTC
* *
15389098 ATTTATTTTTTATAAATAATTTC
1 ATTTATCTTTTATAAAAAATTTC
15389121 A
1 A
15389122 AAAAAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (23 bp):
ATTTATCTTTTATAAAAAATTTC
Found at i:15389835 original size:345 final size:346
Alignment explanation
Indices: 15389194--15389885 Score: 1377
Period size: 345 Copynumber: 2.0 Consensus size: 346
15389184 ATCCAATACA
15389194 ATGCTCAAATTTGATATTACTATTCAATTATTTAAAAATTTTATATAAATATATTTTTGCCAAAG
1 ATGCTCAAATTTGATATTACTATTCAATTATTTAAAAATTTTATATAAATATATTTTTGCCAAAG
15389259 AAGTTTGTTTATACTACCAATAATTACTCTTTTCGGGGATAACCACGTTGAAAACAATTTCTTTT
66 AAGTTTGTTTATACTACCAATAATTACTCTTTTCGGGGATAACCACGTTGAAAACAATTTCTTTT
15389324 TAAATCACACGATTTTTAGATTTCCATTTTAATACTATTTTTTAATTTTACTTATTTAGTATTTA
131 TAAATCACACGATTTTTAGATTTCCATTTTAATACTATTTTTTAATTTTACTTATTTAGTATTTA
15389389 AAAATATTTTTTTCTTATTATATATTACTTTCGTACTTAGATTATTTAGTAAAATATTAATCTAA
196 AAAATATTTTTTTCTTATTATATATTACTTTCGTACTTAGATTATTTAGTAAAATATTAATCTAA
15389454 TTAATACAAAATTTAAACAATTCAATTAATATAAACATTGAATGAGATTTTGTTTTTTTACATTA
261 TTAATACAAAATTTAAACAATTCAATTAATATAAACATTGAATGAGATTTTGTTTTTTTACATTA
15389519 TTAACAAATTGGTTAGATTTT
326 TTAACAAATTGGTTAGATTTT
15389540 ATGCTCAAA-TTGATATTACTATTCAATTATTTAAAAATTTTATATAAATATATTTTTGCCAAAG
1 ATGCTCAAATTTGATATTACTATTCAATTATTTAAAAATTTTATATAAATATATTTTTGCCAAAG
15389604 AAGTTTGTTTATACTACCAATAATTACTCTTTTCGGGGATAACCACGTTGAAAACAATTTCTTTT
66 AAGTTTGTTTATACTACCAATAATTACTCTTTTCGGGGATAACCACGTTGAAAACAATTTCTTTT
15389669 TAAATCACACGATTTTTAGATTTCCATTTTAATACTATTTTTTAATTTTACTTATTTAGTATTTA
131 TAAATCACACGATTTTTAGATTTCCATTTTAATACTATTTTTTAATTTTACTTATTTAGTATTTA
15389734 AAAATATTTTTTTCTTATTATATATTACTTTCGTACTTAGATTATTTAGTAAAATATTAATCTAA
196 AAAATATTTTTTTCTTATTATATATTACTTTCGTACTTAGATTATTTAGTAAAATATTAATCTAA
15389799 TTAATACAAAATTTAAACAATTCAATTAATATAAACATTGAATGAGATTTTGTTTTTTTACATTA
261 TTAATACAAAATTTAAACAATTCAATTAATATAAACATTGAATGAGATTTTGTTTTTTTACATTA
15389864 TTAACAAATTGGTTAGATTTT
326 TTAACAAATTGGTTAGATTTT
15389885 A
1 A
15389886 GATTATATAT
Statistics
Matches: 346, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
345 337 0.97
346 9 0.03
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.46
Consensus pattern (346 bp):
ATGCTCAAATTTGATATTACTATTCAATTATTTAAAAATTTTATATAAATATATTTTTGCCAAAG
AAGTTTGTTTATACTACCAATAATTACTCTTTTCGGGGATAACCACGTTGAAAACAATTTCTTTT
TAAATCACACGATTTTTAGATTTCCATTTTAATACTATTTTTTAATTTTACTTATTTAGTATTTA
AAAATATTTTTTTCTTATTATATATTACTTTCGTACTTAGATTATTTAGTAAAATATTAATCTAA
TTAATACAAAATTTAAACAATTCAATTAATATAAACATTGAATGAGATTTTGTTTTTTTACATTA
TTAACAAATTGGTTAGATTTT
Found at i:15390260 original size:14 final size:14
Alignment explanation
Indices: 15390241--15390279 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
15390231 TTGTTTCACT
*
15390241 GAAAATGACTTCTG
1 GAAAATGACTTCTA
*
15390255 GAAAATGATTTCTA
1 GAAAATGACTTCTA
15390269 GAAAATGACTT
1 GAAAATGACTT
15390280 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGACTTCTA
Found at i:15390942 original size:27 final size:27
Alignment explanation
Indices: 15390908--15390971 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
15390898 ATAAAAAATA
*
15390908 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
15390935 ACCAAAATATTATAAATTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
15390962 ACCAAAATAT
1 ACCAAAATAT
15390972 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (27 bp):
ACCAAAATATTATAAATTTTTTTATTT
Found at i:15391051 original size:27 final size:27
Alignment explanation
Indices: 15391021--15391097 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
15391011 GGCCAATCAC
*
15391021 ATTGGCGGCACCAAAGGTGCCAATGTA
1 ATTGGCGGCACCAATGGTGCCAATGTA
* *
15391048 ATTGGCAGCACCAATGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAATGTA
15391075 ATTGGCGGCACCAATGGTGCCAA
1 ATTGGCGGCACCAATGGTGCCAA
15391098 AGGACTAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.19
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAATGTA
Found at i:15392260 original size:27 final size:27
Alignment explanation
Indices: 15392175--15392251 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
15392165 TTTTAGTCCT
15392175 TTGGCACCATTGGTGCCGCCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCACA
* *
15392202 TTGGCAACATTGGTTCCGCCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCACA
*
15392229 TTGGCACCTTTGGTGCCGCCAAT
1 TTGGCACCATTGGTGCCGCCAAT
15392252 GTGATTGGCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCACA
Found at i:15392343 original size:26 final size:28
Alignment explanation
Indices: 15392314--15392377 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
15392304 TTTTTTTAGT
15392314 ATATTTTGGTAAAT-AAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
15392340 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
15392368 ATATTTTGGT
1 ATATTTTGGT
15392378 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 14 0.39
27 7 0.19
28 15 0.42
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:15393070 original size:10 final size:10
Alignment explanation
Indices: 15393044--15393076 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
15393034 TATAAGAATT
15393044 ATAAATAAAA
1 ATAAATAAAA
*
15393054 AT-TATAAAA
1 ATAAATAAAA
15393063 ATAAATAAAA
1 ATAAATAAAA
15393073 ATAA
1 ATAA
15393077 CTATATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
ATAAATAAAA
Found at i:15395169 original size:21 final size:20
Alignment explanation
Indices: 15395128--15395170 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
15395118 AGAAAATAAA
* *
15395128 TAAAATCATTTGTAGTTCTT
1 TAAAATCATTTGTAATACTT
15395148 TAAAATCATGTTGTAATACTT
1 TAAAATCAT-TTGTAATACTT
15395169 TA
1 TA
15395171 TAATTGGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (20 bp):
TAAAATCATTTGTAATACTT
Found at i:15396589 original size:6 final size:6
Alignment explanation
Indices: 15396578--15396674 Score: 68
Period size: 6 Copynumber: 16.2 Consensus size: 6
15396568 TATCTAAGTA
* * * * *
15396578 ACACAC ACACAC ACACAC ACACAC ACACAA AGACCC ACACCC ACACCC
1 ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC
* * * * * * * * *
15396626 ACACCC ACACCC TCACCC ACACCC ACACCC ACATAC ACATAT ACACAC
1 ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC
15396674 A
1 A
15396675 TATATATCAT
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 79 1.00
ACGTcount: A:0.42, C:0.53, G:0.01, T:0.04
Consensus pattern (6 bp):
ACACAC
Found at i:15396601 original size:18 final size:18
Alignment explanation
Indices: 15396578--15396664 Score: 84
Period size: 18 Copynumber: 4.8 Consensus size: 18
15396568 TATCTAAGTA
*
15396578 ACACACACACACACACAC
1 ACACACACACACACACCC
* *
15396596 ACACACACACAAAGACCC
1 ACACACACACACACACCC
* *
15396614 ACACCCACACCCACACCC
1 ACACACACACACACACCC
* * *
15396632 ACACCCTCACCCACACCC
1 ACACACACACACACACCC
* *
15396650 ACACCCACATACACA
1 ACACACACACACACA
15396665 TATACACACA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.41, C:0.55, G:0.01, T:0.02
Consensus pattern (18 bp):
ACACACACACACACACCC
Found at i:15401792 original size:22 final size:22
Alignment explanation
Indices: 15401765--15401806 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
15401755 TAAGAATTGT
15401765 ATTAAATTGAGTGAAATTTAGA
1 ATTAAATTGAGTGAAATTTAGA
*
15401787 ATTAAATTGAGTTAAATTTA
1 ATTAAATTGAGTGAAATTTA
15401807 CTTATATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.40
Consensus pattern (22 bp):
ATTAAATTGAGTGAAATTTAGA
Found at i:15415162 original size:17 final size:17
Alignment explanation
Indices: 15415140--15415175 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
15415130 AACCTTATTC
*
15415140 AAAGGTTGAAAAACCTT
1 AAAGGTTGAAAAAACTT
15415157 AAAGGTTGAAAAAACTT
1 AAAGGTTGAAAAAACTT
15415174 AA
1 AA
15415176 TTAAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.53, C:0.08, G:0.17, T:0.22
Consensus pattern (17 bp):
AAAGGTTGAAAAAACTT
Found at i:15416225 original size:94 final size:94
Alignment explanation
Indices: 15416059--15416312 Score: 276
Period size: 94 Copynumber: 2.7 Consensus size: 94
15416049 TGCTCAACTG
* * * * * *
15416059 CAACCTCAGGGGCATAAGAATTGTACCTTC-ATCTTGCTCCACTGCAACTTAAGGGAGATAAGAT
1 CAACTTCAGGGGTAAAAGATTTGTAGCTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGAT
* * *
15416123 TCACTATGGTAGATTCAATCAAACCTATTA
65 TTACTATGGTAGATTCAATCAAACCCACTA
* *
15416153 CAACTTCAGGGGTAAAAGTTTTGTAGCTTCAATCTGCTTCACTGCAACTTCAGGGAGATAAGATT
1 CAACTTCAGGGGTAAAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* ** *
15416218 TTCTATGGTAGATTCAATCTGACCCACTG
66 TACTATGGTAGATTCAATCAAACCCACTA
* ** * * * * * *
15416247 TAACTTCAGGGGTGTAGGATTTGTAGCTTTAATTTGCTCCACTGTAACTCCAAGGAGATAAGATT
1 CAACTTCAGGGGTAAAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
15416312 T
66 T
15416313 GTAGCTTCAT
Statistics
Matches: 133, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
94 130 0.98
95 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (94 bp):
CAACTTCAGGGGTAAAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
TACTATGGTAGATTCAATCAAACCCACTA
Found at i:15416255 original size:50 final size:50
Alignment explanation
Indices: 15416097--15416257 Score: 147
Period size: 50 Copynumber: 3.3 Consensus size: 50
15416087 TCATCTTGCT
* ** **
15416097 CCACTGCAACTTAAGGGAGATAAGATTCACTATGGTAGATTCAATCAAAC
1 CCACTGCAACTTCAGGGAGATAAGATTTTCTATGGTAGATTCAATCTGAC
* * * ** *
15416147 CTATTACAACTTCAGGG-G-TAA-AAGTT-T-T-GTAGCTTCAATCTG-C
1 CCACTGCAACTTCAGGGAGATAAGATTTTCTATGGTAGATTCAATCTGAC
*
15416190 TTCACTGCAACTTCAGGGAGATAAGATTTTCTATGGTAGATTCAATCTGAC
1 -CCACTGCAACTTCAGGGAGATAAGATTTTCTATGGTAGATTCAATCTGAC
*
15416241 CCACTGTAACTTCAGGG
1 CCACTGCAACTTCAGGG
15416258 GTGTAGGATT
Statistics
Matches: 83, Mismatches: 20, Indels: 16
0.70 0.17 0.13
Matches are distributed among these distances:
43 1 0.01
44 24 0.29
45 2 0.02
46 4 0.05
47 4 0.05
48 4 0.05
49 2 0.02
50 41 0.49
51 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (50 bp):
CCACTGCAACTTCAGGGAGATAAGATTTTCTATGGTAGATTCAATCTGAC
Found at i:15416348 original size:44 final size:45
Alignment explanation
Indices: 15415967--15416491 Score: 226
Period size: 44 Copynumber: 11.6 Consensus size: 45
15415957 ATTCCAACCT
* * ** *
15415967 ACTGCAACTTCAGGG-GTATAGGAATTGTATTTTCAATC-TGATCC
1 ACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTTGCTCC
** * * * * *
15416011 ACTAAAACTTTAGGGATATAGGAGTTGTAGCTTC-ATCTTGCTCA
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTTGCTCC
* * *
15416055 ACTGCAACCTCAGGG-GCATAAGAATTGTACCTTC-ATCTTGCTCC
1 ACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTTGCTCC
* * *** *
15416099 ACTGCAACTTAAGGGAGATAAGATTCACTATGGTAGATTCAATCAAAC-CT
1 ACTGCAACTTCAGGGAGATAAGA-T---T-T-GTAGCTTCAATCTTGCTCC
* * * * *
15416149 ATTACAACTTCAGGG-GTAAAAGTTTTGTAGCTTCAATC-TGCTTC
1 ACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTTGCTCC
*
15416193 ACTGCAACTTCAGGGAGATAAGATTTTCTATGGTAGATTCAATC-TGAC-CC
1 ACTGCAACTTCAGGGAGATAAGA---T-T-T-GTAGCTTCAATCTTG-CTCC
* * * *
15416243 ACTGTAACTTCAGGG-GTGTAGGATTTGTAGCTTTAAT-TTGCTCC
1 ACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTTGCTCC
* * *
15416287 ACTGTAACTCCAAGGAGATAAGATTTGTAGCTTC-ATCTTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTTGCTCC
* * ***
15416331 ACTGCAACTTCAGGGAGATAAGATCCACCATTGTAGTTTCATTCCAAC-CC
1 ACTGCAACTTCAGGGAGATAAGAT------TTGTAGCTTCAATCTTGCTCC
** * * * * *
15416381 ACAACAACTTTAGGG-G-TATAGAAATTGTAGCGTCAATC-TGATGC
1 ACTGCAACTTCAGGGAGATA-AG-ATTTGTAGCTTCAATCTTGCTCC
* * * *
15416425 ACTACAACTTCA-AG-GATAGGATTTGTAGTTTC-ATCTTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTTGCTCC
*
15416467 ACTGCAACTTCAAGGAGATAAGATT
1 ACTGCAACTTCAGGGAGATAAGATT
15416492 CACTATGGTA
Statistics
Matches: 357, Mismatches: 84, Indels: 80
0.69 0.16 0.15
Matches are distributed among these distances:
41 3 0.01
42 24 0.07
43 11 0.03
44 211 0.59
45 5 0.01
46 2 0.01
47 2 0.01
48 4 0.01
49 8 0.02
50 79 0.22
51 8 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (45 bp):
ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTTGCTCC
Found at i:15416411 original size:232 final size:231
Alignment explanation
Indices: 15415998--15416436 Score: 535
Period size: 232 Copynumber: 1.9 Consensus size: 231
15415988 GAATTGTATT
* * *
15415998 TTCAATCTGATCCACTAAAACTTTAGGGATATAGGAGTTGTAGCTTCATCTTGCTCAACTGCAAC
1 TTCAATCTGACCCACTAAAACTTCAGGGATATAGGAGTTGTAGCTTAATCTTGCTCAACTGCAAC
* * *
15416063 CTCAGGGGCATAAGAATTGTACCTTCATCTTGCTCCACTGCAACTTAAGGGAGATAAGATTCACT
66 CTCAGGAGCATAAGAATTGTACCTTCATCTTGCTCCACTGCAACTTAAGGGAGATAAGATCCACC
* ** * * * *
15416128 ATGGTAGATTCAATCAAACCTATTACAACTTCAGGGGTAAAAGTTTTGTAGCTTCAATCTGCTTC
131 ATGGTAGATTCAATCAAACCCACAACAACTTCAGGGGTAAAAG-ATTGTAGCGTCAATCTGATGC
*
15416193 ACTGCAACTTCAGGGAGATAAGATTTTCTATGGTAGA
195 ACTACAACTTCAGGGAGATAAGATTTTCTATGGTAGA
** * * * * *
15416230 TTCAATCTGACCCACTGTAACTTCAGGGGTGTAGGATTTGTAGCTTTAAT-TTGCTCCACTGTAA
1 TTCAATCTGACCCACTAAAACTTCAGGGATATAGGAGTTGTAGC-TTAATCTTGCTCAACTGCAA
* * *
15416294 -CTCCAAGGAG-ATAAGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATCC
65 CCT-C-AGGAGCATAAGAATTGTACCTTCATCTTGCTCCACTGCAACTTAAGGGAGATAAGATCC
* * * * *
15416357 ACCATTGTAGTTTCATTCCAACCCACAACAACTTTAGGGGTATAGAA-ATTGTAGCGTCAATCTG
128 ACCATGGTAGATTCAATCAAACCCACAACAACTTCAGGGGTA-A-AAGATTGTAGCGTCAATCTG
15416421 ATGCACTACAACTTCA
191 ATGCACTACAACTTCA
15416437 AGGATAGGAT
Statistics
Matches: 173, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
231 2 0.01
232 160 0.92
233 9 0.05
234 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (231 bp):
TTCAATCTGACCCACTAAAACTTCAGGGATATAGGAGTTGTAGCTTAATCTTGCTCAACTGCAAC
CTCAGGAGCATAAGAATTGTACCTTCATCTTGCTCCACTGCAACTTAAGGGAGATAAGATCCACC
ATGGTAGATTCAATCAAACCCACAACAACTTCAGGGGTAAAAGATTGTAGCGTCAATCTGATGCA
CTACAACTTCAGGGAGATAAGATTTTCTATGGTAGA
Found at i:15416526 original size:136 final size:138
Alignment explanation
Indices: 15416172--15416553 Score: 448
Period size: 136 Copynumber: 2.8 Consensus size: 138
15416162 GGGTAAAAGT
* **
15416172 TTTGTAGCTTCAATC-TGCTTCACTGCAACTTCAGGGAGATAAGATTTTCTATGGTAGATTCAAT
1 TTTGTAGCTTC-ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTATGGTAGATTCAAT
* * * * * * * * **
15416236 CTGACCCACTGTAACTTCAGGGGTGTAGGATTTGTAGCTTTAATTTGCTCCACTGTAACTCCAAG
65 CCGACCCACTGTAACTTCAGGGGTATAGAAATTGTAGCATCAATCTGATCCACTACAACTCCAAG
15416301 GAGATAAGA
130 GAGATAAGA
* * * * *
15416310 TTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATCCACCATTGTAGTTTCATTC
1 TTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTATGGTAGATTCAATC
* *** * * * *
15416375 CAACCCACAACAACTTTAGGGGTATAGAAATTGTAGCGTCAATCTGATGCACTACAACTTCAA-G
66 CGACCCACTGTAACTTCAGGGGTATAGAAATTGTAGCATCAATCTGATCCACTACAACTCCAAGG
*
15416439 -GATAGGA
131 AGATAAGA
* *
15416446 TTTGTAGTTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCACTATGGTA-AGTTCAAT
1 TTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTATGGTAGA-TTCAAT
*
15416510 CCGAGCCACTGTAACTTCAGGGGTATAGAAATTGTAGCATCAAT
65 CCGACCCACTGTAACTTCAGGGGTATAGAAATTGTAGCATCAAT
15416554 TAGGGGTGCG
Statistics
Matches: 202, Mismatches: 40, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
136 99 0.49
137 4 0.02
138 99 0.49
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (138 bp):
TTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTATGGTAGATTCAATC
CGACCCACTGTAACTTCAGGGGTATAGAAATTGTAGCATCAATCTGATCCACTACAACTCCAAGG
AGATAAGA
Found at i:15421074 original size:17 final size:17
Alignment explanation
Indices: 15421054--15421114 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
15421044 ATTTCAAGAC
15421054 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* ** *
15421071 TTATGTAGTGATTCAAATAC
1 TTATGTAATG-TT--TTTAA
15421091 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
15421108 TTATGTA
1 TTATGTA
15421115 GTGATTCAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 18 0.55
18 2 0.06
19 2 0.06
20 11 0.33
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.52
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:15421093 original size:37 final size:37
Alignment explanation
Indices: 15421052--15421123 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
15421042 TAATTTCAAG
15421052 ACTTATGTAATGTTTTTAATTATGTAGTGATTCAAAT
1 ACTTATGTAATGTTTTTAATTATGTAGTGATTCAAAT
15421089 ACTTATGTAATGTTTTTAATTATGTAGTGATTCAA
1 ACTTATGTAATGTTTTTAATTATGTAGTGATTCAA
15421124 TTCGGGTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.49
Consensus pattern (37 bp):
ACTTATGTAATGTTTTTAATTATGTAGTGATTCAAAT
Found at i:15431792 original size:2 final size:2
Alignment explanation
Indices: 15431785--15431814 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
15431775 CTGTTTATTC
*
15431785 AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15431815 TCTTGGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:15432064 original size:23 final size:23
Alignment explanation
Indices: 15432025--15432072 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
15432015 TTTTAAATGA
15432025 TTTTATAAATAATTTATTTAATT
1 TTTTATAAATAATTTATTTAATT
* *
15432048 TTTTATATAT-ATATTATTTTATT
1 TTTTATAAATAAT-TTATTTAATT
15432071 TT
1 TT
15432073 GAATTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTATAAATAATTTATTTAATT
Found at i:15435980 original size:14 final size:12
Alignment explanation
Indices: 15435947--15435989 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
15435937 AAAGTGCCAA
15435947 AAATAATAAAAG
1 AAATAATAAAAG
15435959 AAATAATAAAATG
1 AAATAATAAAA-G
*
15435972 ATGATAATAAAA-
1 A-AATAATAAAAG
15435984 AAATAA
1 AAATAA
15435990 GATAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 4 0.15
12 12 0.44
13 2 0.07
14 9 0.33
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (12 bp):
AAATAATAAAAG
Found at i:15436729 original size:29 final size:28
Alignment explanation
Indices: 15436666--15436728 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
15436656 TTAAGTTAAA
*
15436666 TTTTTTTGAAAAAAATCCATTTCATCCC
1 TTTTTTTAAAAAAAATCCATTTCATCCC
* * *
15436694 TTGTTTTAAAAAAAACTTCATTTC-TCCT
1 TTTTTTTAAAAAAAA-TCCATTTCATCCC
15436722 TTTTTTT
1 TTTTTTT
15436729 TCTCTCAGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
28 22 0.76
29 7 0.24
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (28 bp):
TTTTTTTAAAAAAAATCCATTTCATCCC
Found at i:15439476 original size:3 final size:3
Alignment explanation
Indices: 15439470--15439514 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
15439460 CATCATCATC
15439470 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
15439515 GAATGTATGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:15445981 original size:17 final size:18
Alignment explanation
Indices: 15445959--15445993 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15445949 ACAACTTCTA
15445959 TTAAAT-TATAATTATTT
1 TTAAATGTATAATTATTT
*
15445976 TTAAATGTATAGTTATTT
1 TTAAATGTATAATTATTT
15445994 CAACTTCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (18 bp):
TTAAATGTATAATTATTT
Found at i:15446000 original size:44 final size:44
Alignment explanation
Indices: 15445924--15446047 Score: 196
Period size: 44 Copynumber: 2.8 Consensus size: 44
15445914 ATTCTTATTC
* * **
15445924 TAATTATTTTT-AATGTGTAATTATCACAACTTCTATTAAATTA
1 TAATTATTTTTAAATGTATAGTTATTTCAACTTCTATTAAATTA
15445967 TAATTATTTTTAAATGTATAGTTATTTCAACTTCTATTAAATTA
1 TAATTATTTTTAAATGTATAGTTATTTCAACTTCTATTAAATTA
*
15446011 TAATTATTTTTAAATGTATAGTTATTTCACCTTCTAT
1 TAATTATTTTTAAATGTATAGTTATTTCAACTTCTAT
15446048 ATGTATAGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
43 11 0.15
44 64 0.85
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.52
Consensus pattern (44 bp):
TAATTATTTTTAAATGTATAGTTATTTCAACTTCTATTAAATTA
Found at i:15446025 original size:17 final size:18
Alignment explanation
Indices: 15446003--15446037 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15445993 TCAACTTCTA
15446003 TTAAAT-TATAATTATTT
1 TTAAATGTATAATTATTT
*
15446020 TTAAATGTATAGTTATTT
1 TTAAATGTATAATTATTT
15446038 CACCTTCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (18 bp):
TTAAATGTATAATTATTT
Found at i:15446067 original size:23 final size:24
Alignment explanation
Indices: 15446024--15446070 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
15446014 TTATTTTTAA
*
15446024 ATGTATAGTTATTTCACCTTCTAT
1 ATGTATAGTTATTTCAACTTCTAT
15446048 ATGTATAGTT-TTTCAACTTCTAT
1 ATGTATAGTTATTTCAACTTCTAT
15446071 TAAATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.51
Consensus pattern (24 bp):
ATGTATAGTTATTTCAACTTCTAT
Found at i:15446067 original size:67 final size:68
Alignment explanation
Indices: 15445980--15446114 Score: 263
Period size: 67 Copynumber: 2.0 Consensus size: 68
15445970 TTATTTTTAA
15445980 ATGTATAGTTATTTCAACTTCTATTAAATTATAATTATTTTTAAATGTATAGTTATTTCACCTTC
1 ATGTATAGTTATTTCAACTTCTATTAAATTATAATTATTTTTAAATGTATAGTTATTTCACCTTC
15446045 TAT
66 TAT
15446048 ATGTATAGTT-TTTCAACTTCTATTAAATTATAATTATTTTTAAATGTATAGTTATTTCACCTTC
1 ATGTATAGTTATTTCAACTTCTATTAAATTATAATTATTTTTAAATGTATAGTTATTTCACCTTC
15446112 TAT
66 TAT
15446115 TTTGTTTAAT
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
67 57 0.85
68 10 0.15
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (68 bp):
ATGTATAGTTATTTCAACTTCTATTAAATTATAATTATTTTTAAATGTATAGTTATTTCACCTTC
TAT
Found at i:15446092 original size:17 final size:18
Alignment explanation
Indices: 15446070--15446104 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15446060 TCAACTTCTA
15446070 TTAAAT-TATAATTATTT
1 TTAAATGTATAATTATTT
*
15446087 TTAAATGTATAGTTATTT
1 TTAAATGTATAATTATTT
15446105 CACCTTCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (18 bp):
TTAAATGTATAATTATTT
Found at i:15449004 original size:3 final size:3
Alignment explanation
Indices: 15448996--15449021 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15448986 TTTTCATAGG
15448996 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
15449022 GTAAATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:15454294 original size:202 final size:203
Alignment explanation
Indices: 15454010--15454414 Score: 803
Period size: 202 Copynumber: 2.0 Consensus size: 203
15454000 ATGAAATTAT
15454010 ATTTTTATTATTATAAAAATATATAATTTAATTCTGACCCTAAAAACTTTTCTAACTCCGCAAAA
1 ATTTTTATTATTATAAAAATATATAATTTAATTCTGACCCTAAAAACTTTTCTAACTCCGCAAAA
15454075 AAAATTGGTGGTTAGATAAAATCATGGAAAATTACAAACTTAGAAAAAAAAATATTCATTTTATT
66 AAAATTGGTGGTTAGATAAAATCATGGAAAATTACAAACTTAGAAAAAAAAATATTCATTTTATT
15454140 GTGATTCTAGAAAAATTATCCATTATTTGATAAGATTGAAAAATTATCCATTATATGTGACATAT
131 GTGATTCTAGAAAAATTATCCATTATTTGATAAGATTGAAAAATTATCCATTATATGTGACATAT
15454205 ACTCATTG
196 ACTCATTG
15454213 ATTTTTATTA-TATAAAAATATATAATTTAATTCTGACCCTAAAAACTTTTCTAACTCCGCAAAA
1 ATTTTTATTATTATAAAAATATATAATTTAATTCTGACCCTAAAAACTTTTCTAACTCCGCAAAA
15454277 AAAATTGGTGGTTAGATAAAATCATGGAAAATTACAAACTTAGAAAAAAAAATATTCATTTTATT
66 AAAATTGGTGGTTAGATAAAATCATGGAAAATTACAAACTTAGAAAAAAAAATATTCATTTTATT
15454342 GTGATTCTAGAAAAATTATCCATTATTTGATAAGATTGAAAAATTATCCATTATATGTGACATAT
131 GTGATTCTAGAAAAATTATCCATTATTTGATAAGATTGAAAAATTATCCATTATATGTGACATAT
15454407 ACTCATTG
196 ACTCATTG
15454415 GTGGATGTAC
Statistics
Matches: 202, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
202 192 0.95
203 10 0.05
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (203 bp):
ATTTTTATTATTATAAAAATATATAATTTAATTCTGACCCTAAAAACTTTTCTAACTCCGCAAAA
AAAATTGGTGGTTAGATAAAATCATGGAAAATTACAAACTTAGAAAAAAAAATATTCATTTTATT
GTGATTCTAGAAAAATTATCCATTATTTGATAAGATTGAAAAATTATCCATTATATGTGACATAT
ACTCATTG
Found at i:15456206 original size:29 final size:29
Alignment explanation
Indices: 15456174--15456260 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 29
15456164 CTCTCTCAAC
15456174 AAAAGTTACAAAAATTCAAAATATTTATA
1 AAAAGTTACAAAAATTCAAAATATTTATA
* * * *
15456203 AAAA-TTTC-AAAATT-AATATATTTTTT
1 AAAAGTTACAAAAATTCAAAATATTTATA
* *
15456229 AAAAGATTATAAAAATTC-TAATATTTAGTA
1 AAAAG-TTACAAAAATTCAAAATATTTA-TA
15456259 AA
1 AA
15456261 GAAGGGCCAA
Statistics
Matches: 43, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
26 13 0.30
27 6 0.14
28 5 0.12
29 16 0.37
30 3 0.07
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (29 bp):
AAAAGTTACAAAAATTCAAAATATTTATA
Found at i:15456214 original size:28 final size:30
Alignment explanation
Indices: 15456174--15456260 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 30
15456164 CTCTCTCAAC
15456174 AAAAG-TTA-CAAAAATTCAAAATATTTAT
1 AAAAGATTATCAAAAATTCAAAATATTTAT
* *
15456202 AAAA-ATT-TC-AAAATT-AATATATTTTTT
1 AAAAGATTATCAAAAATTCAAAATA-TTTAT
*
15456229 AAAAGATTAT-AAAAATTC-TAATATTTAGT
1 AAAAGATTATCAAAAATTCAAAATATTTA-T
15456258 AAA
1 AAA
15456261 GAAGGGCCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 15
0.70 0.08 0.23
Matches are distributed among these distances:
26 5 0.11
27 14 0.30
28 13 0.28
29 14 0.30
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAAGATTATCAAAAATTCAAAATATTTAT
Found at i:15456514 original size:2 final size:2
Alignment explanation
Indices: 15456507--15456535 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15456497 AAAAATTCTA
15456507 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15456536 AAGTAAGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15458674 original size:10 final size:9
Alignment explanation
Indices: 15458658--15458732 Score: 55
Period size: 10 Copynumber: 7.8 Consensus size: 9
15458648 TTTTTTAAAA
15458658 AAAATTATT
1 AAAATTATT
15458667 AGAAATTATT
1 A-AAATTATT
15458677 AAAATGT-TAT
1 AAAAT-TAT-T
15458687 AAAA-TATT
1 AAAATTATT
15458695 ATATAAGTTATT
1 A-A-AA-TTATT
15458707 AAATATTATT
1 AAA-ATTATT
**
15458717 AAAAAAATT
1 AAAATTATT
15458726 AAAATTA
1 AAAATTA
15458733 CTACTCCTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
8 3 0.06
9 17 0.32
10 26 0.49
11 2 0.04
12 5 0.09
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (9 bp):
AAAATTATT
Found at i:15458829 original size:32 final size:33
Alignment explanation
Indices: 15458793--15458870 Score: 97
Period size: 32 Copynumber: 2.4 Consensus size: 33
15458783 TATAATCCTT
* *
15458793 AAAAATCATTTAA-CCCTCCTAAAATAATTAAA
1 AAAAATCAATTAAGCCCTCATAAAATAATTAAA
* *
15458825 AAAAATCAATTAAGTCCTCATAAAATAATT-TA
1 AAAAATCAATTAAGCCCTCATAAAATAATTAAA
*
15458857 AAGAATCAATTAAG
1 AAAAATCAATTAAG
15458871 GTTTGATGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
32 26 0.65
33 14 0.35
ACGTcount: A:0.54, C:0.14, G:0.04, T:0.28
Consensus pattern (33 bp):
AAAAATCAATTAAGCCCTCATAAAATAATTAAA
Found at i:15460359 original size:126 final size:126
Alignment explanation
Indices: 15460134--15460386 Score: 506
Period size: 126 Copynumber: 2.0 Consensus size: 126
15460124 TTTCTTCTAC
15460134 TTTCTCTTTTTTCAGTCTATAACAACATTATTTATACTATGAAAAGGAATAAGTCAGAAATTTCA
1 TTTCTCTTTTTTCAGTCTATAACAACATTATTTATACTATGAAAAGGAATAAGTCAGAAATTTCA
15460199 ATCTTTTAGCTGTTACATGAATATATAGATGATAGATATTTCAATCATTGCTCCAACATTA
66 ATCTTTTAGCTGTTACATGAATATATAGATGATAGATATTTCAATCATTGCTCCAACATTA
15460260 TTTCTCTTTTTTCAGTCTATAACAACATTATTTATACTATGAAAAGGAATAAGTCAGAAATTTCA
1 TTTCTCTTTTTTCAGTCTATAACAACATTATTTATACTATGAAAAGGAATAAGTCAGAAATTTCA
15460325 ATCTTTTAGCTGTTACATGAATATATAGATGATAGATATTTCAATCATTGCTCCAACATTA
66 ATCTTTTAGCTGTTACATGAATATATAGATGATAGATATTTCAATCATTGCTCCAACATTA
15460386 T
1 T
15460387 GGTTTATTTT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 127 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (126 bp):
TTTCTCTTTTTTCAGTCTATAACAACATTATTTATACTATGAAAAGGAATAAGTCAGAAATTTCA
ATCTTTTAGCTGTTACATGAATATATAGATGATAGATATTTCAATCATTGCTCCAACATTA
Found at i:15461764 original size:18 final size:18
Alignment explanation
Indices: 15461723--15461786 Score: 103
Period size: 18 Copynumber: 3.6 Consensus size: 18
15461713 AAATATGAGA
*
15461723 AATGATGTTCACATTTAT
1 AATGATGTTCACATTTCT
15461741 -ATGATGTTCACATTTCT
1 AATGATGTTCACATTTCT
*
15461758 AATGATGTTCACATTTCA
1 AATGATGTTCACATTTCT
15461776 AATGATGTTCA
1 AATGATGTTCA
15461787 AATTGATGGA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 16 0.37
18 27 0.63
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.42
Consensus pattern (18 bp):
AATGATGTTCACATTTCT
Found at i:15462298 original size:71 final size:73
Alignment explanation
Indices: 15462212--15462413 Score: 248
Period size: 76 Copynumber: 2.8 Consensus size: 73
15462202 GCTGACAATG
* * * * * ** *
15462212 CTAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTA-T-GTTCTACT
1 CTAAATTAGTTTTATCAATAGTTGTTTATATAT-GATTTTGGATATAAAATTTATTAGGTCTACT
15462275 TA-TTTATA
65 TATTTTATA
*
15462283 CTAAATTAGTTTTATCAATAGTTGTTTATATATGATTTTGGATATAAAATTTATTCACAGGTGTA
1 CTAAATTAGTTTTATCAATAGTTGTTTATATATGATTTTGGATATAAAATTTATT---AGGTCTA
*
15462348 CTTATTTTTTA
63 CTTATTTTATA
*
15462359 CTAAATTAGTTTTATCAATAGTTGTTTATATGTGATTTTGGATATAAAATTTATT
1 CTAAATTAGTTTTATCAATAGTTGTTTATATATGATTTTGGATATAAAATTTATT
15462414 CACAGGTGAT
Statistics
Matches: 114, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
70 17 0.15
71 30 0.26
75 8 0.07
76 59 0.52
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.51
Consensus pattern (73 bp):
CTAAATTAGTTTTATCAATAGTTGTTTATATATGATTTTGGATATAAAATTTATTAGGTCTACTT
ATTTTATA
Found at i:15462376 original size:76 final size:75
Alignment explanation
Indices: 15462271--15462421 Score: 275
Period size: 76 Copynumber: 2.0 Consensus size: 75
15462261 ATTTATGTTC
15462271 TACTTATTTATACTAAATTAGTTTTATCAATAGTTGTTTATATATGATTTTGGATATAAAATTTA
1 TACTTATTTATACTAAATTAGTTTTATCAATAGTTGTTTATATATGATTTTGGATATAAAATTTA
15462336 TTCACAGGTG
66 TTCACAGGTG
* *
15462346 TACTTATTTTTTACTAAATTAGTTTTATCAATAGTTGTTTATATGTGATTTTGGATATAAAATTT
1 TACTTA-TTTATACTAAATTAGTTTTATCAATAGTTGTTTATATATGATTTTGGATATAAAATTT
15462411 ATTCACAGGTG
65 ATTCACAGGTG
15462422 ATGAGTATAG
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
75 6 0.08
76 67 0.92
ACGTcount: A:0.32, C:0.07, G:0.13, T:0.49
Consensus pattern (75 bp):
TACTTATTTATACTAAATTAGTTTTATCAATAGTTGTTTATATATGATTTTGGATATAAAATTTA
TTCACAGGTG
Found at i:15472097 original size:6 final size:6
Alignment explanation
Indices: 15472082--15472127 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
15472072 TATGGCTTGT
* * *
15472082 TGTTGG TGTTGA TGTTGA TGTTGA TGTTGA TGTTGC TGTTGC TGTT
1 TGTTGA TGTTGA TGTTGA TGTTGA TGTTGA TGTTGA TGTTGA TGTT
15472128 TTTTAGGCTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.09, C:0.04, G:0.35, T:0.52
Consensus pattern (6 bp):
TGTTGA
Found at i:15474382 original size:124 final size:125
Alignment explanation
Indices: 15474151--15474399 Score: 491
Period size: 124 Copynumber: 2.0 Consensus size: 125
15474141 TTTAATTTAA
15474151 TATATAGATTATGTTGAATTGAATTATTTTAGATTCAAGTTATTTGTATGTTTAAGGTTTAACTA
1 TATATAGATTATGTTGAATTGAATTATTTTAGATTCAAGTTATTTGTATGTTTAAGGTTTAACTA
15474216 TTAAAGTCGATAAAATTTATTTTAATTTAAAAATAAAAATAAATCAAAGTTAAATAAGTT
66 TTAAAGTCGATAAAATTTATTTTAATTTAAAAATAAAAATAAATCAAAGTTAAATAAGTT
15474276 TATATAGATT-TGTTGAATTGAATTATTTTAGATTCAAGTTATTTGTATGTTTAAGGTTTAACTA
1 TATATAGATTATGTTGAATTGAATTATTTTAGATTCAAGTTATTTGTATGTTTAAGGTTTAACTA
15474340 TTAAAGTCGATAAAATTTATTTTAATTTAAAAATAAAAATAAATCAAAGTTAAATAAGTT
66 TTAAAGTCGATAAAATTTATTTTAATTTAAAAATAAAAATAAATCAAAGTTAAATAAGTT
15474400 ATTTAATCGA
Statistics
Matches: 124, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
124 114 0.92
125 10 0.08
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.43
Consensus pattern (125 bp):
TATATAGATTATGTTGAATTGAATTATTTTAGATTCAAGTTATTTGTATGTTTAAGGTTTAACTA
TTAAAGTCGATAAAATTTATTTTAATTTAAAAATAAAAATAAATCAAAGTTAAATAAGTT
Found at i:15476019 original size:18 final size:18
Alignment explanation
Indices: 15475996--15476035 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
15475986 TTACATCTCT
15475996 CCTTGGAAATGTAATGTA
1 CCTTGGAAATGTAATGTA
15476014 CCTTGGAAATGTAATGTA
1 CCTTGGAAATGTAATGTA
15476032 CCTT
1 CCTT
15476036 ATCATTGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (18 bp):
CCTTGGAAATGTAATGTA
Found at i:15476388 original size:58 final size:58
Alignment explanation
Indices: 15476312--15476438 Score: 184
Period size: 58 Copynumber: 2.2 Consensus size: 58
15476302 AAAAATTTGA
* * * * * *
15476312 ATAGTTGGATGATCATTTTGTAAC-TTTCATAGTTGGGTGATCAAAAGATAAAAAAACC
1 ATAGTTGGGTGACCATTTTGTAACTTTTCATAATTGGGTAACCAAAA-AAAAAAAAACC
15476370 ATAGTTGGGTGACCATTTTGTAACTTTTCATAATTGGGTAACCAAAAAAAAAAAAACC
1 ATAGTTGGGTGACCATTTTGTAACTTTTCATAATTGGGTAACCAAAAAAAAAAAAACC
15476428 ATAGTTGGGTG
1 ATAGTTGGGTG
15476439 CCCTCTACTG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
58 43 0.69
59 19 0.31
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (58 bp):
ATAGTTGGGTGACCATTTTGTAACTTTTCATAATTGGGTAACCAAAAAAAAAAAAACC
Found at i:15477092 original size:15 final size:13
Alignment explanation
Indices: 15477070--15477104 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
15477060 ATCAAATTAT
15477070 ATTAAAAAATTAAA
1 ATTAAAAAA-TAAA
15477084 ATATAAAAAATAAA
1 AT-TAAAAAATAAA
15477098 ATTAAAA
1 ATTAAAA
15477105 TTTAAACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 8 0.40
15 7 0.35
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
ATTAAAAAATAAA
Found at i:15477476 original size:15 final size:13
Alignment explanation
Indices: 15477454--15477488 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
15477444 ATCAAATTAT
15477454 ATTAAAAAATTAAA
1 ATTAAAAAA-TAAA
15477468 ATATAAAAAATAAA
1 AT-TAAAAAATAAA
15477482 ATTAAAA
1 ATTAAAA
15477489 TTTAAACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 8 0.40
15 7 0.35
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
ATTAAAAAATAAA
Done.