Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 61 of 136
Found at i:20182964 original size:9 final size:8
Alignment explanation
Indices: 20182910--20182966 Score: 64
Period size: 8 Copynumber: 7.2 Consensus size: 8
20182900 TCCATTGAGC
20182910 GAGAAAAA
1 GAGAAAAA
*
20182918 GAAAAAAA
1 GAGAAAAA
20182926 GAGAAAAA
1 GAGAAAAA
20182934 -AGAAAAA
1 GAGAAAAA
**
20182941 GATTAAAA
1 GAGAAAAA
20182949 -AGAAAAA
1 GAGAAAAA
20182956 GAGAGAAAA
1 GAGA-AAAA
20182965 GA
1 GA
20182967 ATGATGAGAG
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
7 12 0.30
8 22 0.55
9 6 0.15
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (8 bp):
GAGAAAAA
Found at i:20188404 original size:22 final size:21
Alignment explanation
Indices: 20188372--20188413 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
20188362 TTGGTATTTA
20188372 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
20188393 GGAATTTGGTACGAATTGGTA
1 GGAA-TTGGTACGAAATGGTA
20188414 ATGGTTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.31, C:0.05, G:0.33, T:0.31
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:20192303 original size:23 final size:23
Alignment explanation
Indices: 20192271--20192382 Score: 134
Period size: 23 Copynumber: 4.9 Consensus size: 23
20192261 CTTGTTGAAC
*
20192271 CATTAACATTTCGTACCAAATCA
1 CATTACCATTTCGTACCAAATCA
* *
20192294 TATTACCATTTCGAACCAAATCA
1 CATTACCATTTCGTACCAAATCA
* * *
20192317 CCTTACCAATTCGTACCAAATCG
1 CATTACCATTTCGTACCAAATCA
* * *
20192340 TATTACCATTTTGAACCAAATCA
1 CATTACCATTTCGTACCAAATCA
*
20192363 CATTACCATTTCGTAACAAA
1 CATTACCATTTCGTACCAAA
20192383 CCCAAAACCG
Statistics
Matches: 71, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 71 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (23 bp):
CATTACCATTTCGTACCAAATCA
Found at i:20192347 original size:46 final size:46
Alignment explanation
Indices: 20192271--20192382 Score: 161
Period size: 46 Copynumber: 2.4 Consensus size: 46
20192261 CTTGTTGAAC
* *
20192271 CATTAACATTTCGTACCAAATCATATTACCATTTCGAACCAAATCA
1 CATTACCAATTCGTACCAAATCATATTACCATTTCGAACCAAATCA
* * *
20192317 CCTTACCAATTCGTACCAAATCGTATTACCATTTTGAACCAAATCA
1 CATTACCAATTCGTACCAAATCATATTACCATTTCGAACCAAATCA
* *
20192363 CATTACCATTTCGTAACAAA
1 CATTACCAATTCGTACCAAA
20192383 CCCAAAACCG
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (46 bp):
CATTACCAATTCGTACCAAATCATATTACCATTTCGAACCAAATCA
Found at i:20200781 original size:20 final size:20
Alignment explanation
Indices: 20200756--20200802 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
20200746 GGGTTAAAAT
*
20200756 TGAGCTGAATTGATCTCGAA-
1 TGAGCTGAATTGAGCTC-AAG
*
20200776 TGAGCTGACTTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
20200796 TGAGCTG
1 TGAGCTG
20200803 GAAACGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:20208573 original size:29 final size:29
Alignment explanation
Indices: 20208538--20208605 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
20208528 ACAAGAACAT
20208538 ATTAAAAACATGTAATAGACTA-A-GACAA
1 ATTAAAAACATGTAATAG-CTATATGACAA
* *
20208566 ATTAAAAACATGTACTAGCTATATGACAT
1 ATTAAAAACATGTAATAGCTATATGACAA
20208595 ATT-AAAACATG
1 ATTAAAAACATG
20208606 CATTAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
27 3 0.08
28 26 0.72
29 7 0.19
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.26
Consensus pattern (29 bp):
ATTAAAAACATGTAATAGCTATATGACAA
Found at i:20210485 original size:18 final size:18
Alignment explanation
Indices: 20210462--20210555 Score: 87
Period size: 18 Copynumber: 5.6 Consensus size: 18
20210452 TCTTTACACG
20210462 TTTCTTTTTCAAGCTCTC
1 TTTCTTTTTCAAGCTCTC
*
20210480 TCTCTTTTTC-A-CTCAT-
1 TTTCTTTTTCAAGCTC-TC
20210496 TTTC-TTTTCAAGCTCTC
1 TTTCTTTTTCAAGCTCTC
*
20210513 TTTCCTTTTC-A-CT-TGC
1 TTTCTTTTTCAAGCTCT-C
20210529 TTTC-TTTTCAAGCTCTC
1 TTTCTTTTTCAAGCTCTC
*
20210546 TTTCCTTTTC
1 TTTCTTTTTC
20210556 TTGCTTACAT
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
15 11 0.17
16 16 0.25
17 17 0.27
18 20 0.31
ACGTcount: A:0.10, C:0.30, G:0.04, T:0.56
Consensus pattern (18 bp):
TTTCTTTTTCAAGCTCTC
Found at i:20210509 original size:33 final size:33
Alignment explanation
Indices: 20210462--20210555 Score: 134
Period size: 33 Copynumber: 2.8 Consensus size: 33
20210452 TCTTTACACG
* * *
20210462 TTTCTTTTTCAAGCTCTCTCTCTTTTTCACTCAT
1 TTTC-TTTTCAAGCTCTCTTTCCTTTTCACTCAC
**
20210496 TTTCTTTTCAAGCTCTCTTTCCTTTTCACTTGC
1 TTTCTTTTCAAGCTCTCTTTCCTTTTCACTCAC
20210529 TTTCTTTTCAAGCTCTCTTTCCTTTTC
1 TTTCTTTTCAAGCTCTCTTTCCTTTTC
20210556 TTGCTTACAT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 51 0.93
34 4 0.07
ACGTcount: A:0.10, C:0.30, G:0.04, T:0.56
Consensus pattern (33 bp):
TTTCTTTTCAAGCTCTCTTTCCTTTTCACTCAC
Found at i:20210622 original size:17 final size:18
Alignment explanation
Indices: 20210602--20210641 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
20210592 TTTTTCGATT
20210602 TCTTTTTC-TTTCATTTC
1 TCTTTTTCATTTCATTTC
*
20210619 TCTTTTTCATTTTATTTC
1 TCTTTTTCATTTCATTTC
20210637 T-TTTT
1 TCTTTT
20210642 GACTCGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.75
Consensus pattern (18 bp):
TCTTTTTCATTTCATTTC
Found at i:20225339 original size:116 final size:117
Alignment explanation
Indices: 20225124--20225356 Score: 450
Period size: 116 Copynumber: 2.0 Consensus size: 117
20225114 TGCCTCAATG
20225124 TTGTCTCGAACTCGTTGGTGCAATTGCTTGACGAAATCAGCTTTACGCTTCCCATCTACATGCAC
1 TTGTCTCGAACTCGTTGGTGCAATTGCTTGACGAAATCAGCTTTACGCTTCCCATCTACATGCAC
*
20225189 AAATTGGTTGGAAGGCAATGGCATTAAATCAAGTGGTGTTAATGGATTGAAA
66 AAATTGGTTGGAAGGCAATGGCATTAAAACAAGTGGTGTTAATGGATTGAAA
20225241 TTGTCTCGAA-TCGTTGGTGCAATTGCTTGACGAAATCAGCTTTACGCTTCCCATCTACATGCAC
1 TTGTCTCGAACTCGTTGGTGCAATTGCTTGACGAAATCAGCTTTACGCTTCCCATCTACATGCAC
20225305 AAATTGGTTGGAAGGCAATGGCATTAAAACAAGTGGTGTTAATGGATTGAAA
66 AAATTGGTTGGAAGGCAATGGCATTAAAACAAGTGGTGTTAATGGATTGAAA
20225357 CTTGATACGA
Statistics
Matches: 115, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
116 105 0.91
117 10 0.09
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (117 bp):
TTGTCTCGAACTCGTTGGTGCAATTGCTTGACGAAATCAGCTTTACGCTTCCCATCTACATGCAC
AAATTGGTTGGAAGGCAATGGCATTAAAACAAGTGGTGTTAATGGATTGAAA
Found at i:20229366 original size:12 final size:12
Alignment explanation
Indices: 20229351--20229392 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
20229341 ATTTTTTTCT
20229351 TTTTTTTTCAAA
1 TTTTTTTTCAAA
* *
20229363 TTTTTTTT-GAT
1 TTTTTTTTCAAA
20229374 TTTTTTTTCAAA
1 TTTTTTTTCAAA
20229386 TTTTTTT
1 TTTTTTT
20229393 ACGAGTCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTTTTTCAAA
Found at i:20229366 original size:13 final size:13
Alignment explanation
Indices: 20229350--20229392 Score: 56
Period size: 11 Copynumber: 3.5 Consensus size: 13
20229340 AATTTTTTTC
20229350 TTTTTTTTTCAAA
1 TTTTTTTTTCAAA
*
20229363 -TTTTTTTT--GA
1 TTTTTTTTTCAAA
20229373 TTTTTTTTTCAAA
1 TTTTTTTTTCAAA
20229386 TTTTTTT
1 TTTTTTT
20229393 ACGAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 1 0.04
11 8 0.32
12 8 0.32
13 8 0.32
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTCAAA
Found at i:20229370 original size:22 final size:23
Alignment explanation
Indices: 20229342--20229392 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
20229332 TCGTATACAA
*
20229342 TTTTTTT-CTTTTTTTTTCAAAT
1 TTTTTTTGATTTTTTTTTCAAAT
20229364 TTTTTTTGATTTTTTTTTCAAAT
1 TTTTTTTGATTTTTTTTTCAAAT
20229387 TTTTTT
1 TTTTTT
20229393 ACGAGTCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTTTTTGATTTTTTTTTCAAAT
Found at i:20230638 original size:21 final size:19
Alignment explanation
Indices: 20230595--20230639 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
20230585 GAGCTCAAAT
* *
20230595 GAGCTGAAATGAGTTCATG
1 GAGCTGAAATGAGCTAATG
20230614 GAGCTAGAAATGAGCTAATTG
1 GAGCT-GAAATGAGCTAA-TG
20230635 GAGCT
1 GAGCT
20230640 CAATGAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 10 0.45
21 7 0.32
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.24
Consensus pattern (19 bp):
GAGCTGAAATGAGCTAATG
Found at i:20232755 original size:21 final size:19
Alignment explanation
Indices: 20232712--20232756 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
20232702 GAGCTCAAAT
* *
20232712 GAGCTGAAATGAGTTCATG
1 GAGCTGAAATGAGCTAATG
20232731 GAGCTAGAAATGAGCTAATTG
1 GAGCT-GAAATGAGCTAA-TG
20232752 GAGCT
1 GAGCT
20232757 CAATGAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 10 0.45
21 7 0.32
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.24
Consensus pattern (19 bp):
GAGCTGAAATGAGCTAATG
Found at i:20235949 original size:37 final size:37
Alignment explanation
Indices: 20235899--20235980 Score: 119
Period size: 37 Copynumber: 2.2 Consensus size: 37
20235889 TATTTCCTAG
* *
20235899 AATAAAATCTTTAAAAGATAATATAATATTAAATTAA
1 AATAAAATATTTAAAAGATAATATAATATTAAAATAA
* * *
20235936 AATAAAATATTTAAAGGATAATATTATTTTAAAATAA
1 AATAAAATATTTAAAAGATAATATAATATTAAAATAA
20235973 AATAAAAT
1 AATAAAAT
20235981 TTGAAAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (37 bp):
AATAAAATATTTAAAAGATAATATAATATTAAAATAA
Found at i:20235958 original size:19 final size:19
Alignment explanation
Indices: 20235899--20235980 Score: 60
Period size: 18 Copynumber: 4.4 Consensus size: 19
20235889 TATTTCCTAG
*
20235899 AATAAAATCTTTAAAAGAT
1 AATAAAATATTTAAAAGAT
* ** *
20235918 AATATAATA-TTAAATTAA
1 AATAAAATATTTAAAAGAT
*
20235936 AATAAAATATTTAAAGGAT
1 AATAAAATATTTAAAAGAT
** * *
20235955 AATATTAT-TTTAAAATAA
1 AATAAAATATTTAAAAGAT
20235973 AATAAAAT
1 AATAAAAT
20235981 TTGAAAAAAA
Statistics
Matches: 46, Mismatches: 16, Indels: 3
0.71 0.25 0.05
Matches are distributed among these distances:
18 27 0.59
19 19 0.41
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (19 bp):
AATAAAATATTTAAAAGAT
Found at i:20239347 original size:31 final size:31
Alignment explanation
Indices: 20239311--20239372 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
20239301 AGATAATTTT
20239311 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
20239342 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
20239373 TAATTTTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:20249329 original size:437 final size:437
Alignment explanation
Indices: 20248515--20249398 Score: 1581
Period size: 437 Copynumber: 2.0 Consensus size: 437
20248505 TAGCCCGTGT
*
20248515 GGCCCACACGGCCACACAATCTCCGTCACATGGCTATGTCTCACACACAGCCAGCCGCACGACCG
1 GGCCCACACGGCCACACAATCTCCGTCACATGGCTACGTCTCACACACAGCCAGCCGCACGACCG
* * *
20248580 ACCACACGCCCGTGTGGTGTCGACAGACCAAATTTTTAGCTTTCGTCGAACCTTATTTTCTCATG
66 ACCACACGCCCATGTGGCGTCGACAGACCAAATTTTTAGCTTTCGCCGAACCTTATTTTCTCATG
* *
20248645 TTTTAGGTATACACCTGGTACAGTTTTGATGTGAAAGTAATTCTGAGCCCTTCCAAACCTAAAAA
131 TTTTAGGTATACACCTGGTACAGTTTTGATGCGAAAGTAATTCCGAGCCCTTCCAAACCTAAAAA
* * *
20248710 ACAGATACATTATGCAAATAACAGATAATAGATACAAAATCACATGATTAACATGCTCGTATATA
196 ACAGATACATCATGCAAATAACAGATAACAGATACAAAATCACATGATTAACATGCTCGTATACA
*
20248775 GATATTGTACTTACTTATGCTGAATAGTCAGACATATATATCGATTTCCTACTCAGATCAGACTA
261 GATATTGTACTTACTTATGCTGAATAGTCAGACATATATATCGATTTCCTACTCAGATCAAACTA
* *
20248840 TTAGATTAACAGATTACATACAATGGGTTTAGTTAGCCCTTATCGACCCTACGGTAGGCGTACAG
326 TTAGATTAACAGATCACATACAATGGGTTTAGTTAGCCCTTATCGACCCTACGATAGGCGTACAG
* *
20248905 TCGATCAGAATGACTTGTGCTACCCTAAAGAAATTTTTAGAATTTTG
391 TCGATCAGAATGACCTGTGCTACCCTAAACAAATTTTTAGAATTTTG
*
20248952 GGCCCACACGGCCACACAATCTCCGTCACATGGCTGCGTCTCACACACAGCCAGCCGCACGACCG
1 GGCCCACACGGCCACACAATCTCCGTCACATGGCTACGTCTCACACACAGCCAGCCGCACGACCG
* *
20249017 GCCACACGCTCATGTGGCGTCGACAGACCAAATTTTTAGCTTTCGCCGAACCTTATTTTCTCATG
66 ACCACACGCCCATGTGGCGTCGACAGACCAAATTTTTAGCTTTCGCCGAACCTTATTTTCTCATG
20249082 TTTTAGGTATACACCTGGTACAGTTTTGATGCGAAAGTAATTCCGAGCCCTTCCAAACCTAAAAA
131 TTTTAGGTATACACCTGGTACAGTTTTGATGCGAAAGTAATTCCGAGCCCTTCCAAACCTAAAAA
20249147 ACAGATACATCATGCAAATAACAGATAACAGATACAAAATCACATGATTAACATGCTCGTATACA
196 ACAGATACATCATGCAAATAACAGATAACAGATACAAAATCACATGATTAACATGCTCGTATACA
20249212 GATATTGTACTTACTTATGCTGAATAGTCAGACATATATATCTG-TTTCCTACTCAGATCAAACT
261 GATATTGTACTTACTTATGCTGAATAGTCAGACATATATATC-GATTTCCTACTCAGATCAAACT
*
20249276 ATTAGATTAATAGATCACATACAATGGGTTTAGTTAGCCCTTATCGACCCTACGATAGGCGTACA
325 ATTAGATTAACAGATCACATACAATGGGTTTAGTTAGCCCTTATCGACCCTACGATAGGCGTACA
*
20249341 GTCGATCGGAATGACCTGTGCTACCCTAAACAAATTTTTAGAATTTTG
390 GTCGATCAGAATGACCTGTGCTACCCTAAACAAATTTTTAGAATTTTG
20249389 GGCCCACACG
1 GGCCCACACG
20249399 CCCAATCTGG
Statistics
Matches: 427, Mismatches: 19, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
437 426 1.00
438 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (437 bp):
GGCCCACACGGCCACACAATCTCCGTCACATGGCTACGTCTCACACACAGCCAGCCGCACGACCG
ACCACACGCCCATGTGGCGTCGACAGACCAAATTTTTAGCTTTCGCCGAACCTTATTTTCTCATG
TTTTAGGTATACACCTGGTACAGTTTTGATGCGAAAGTAATTCCGAGCCCTTCCAAACCTAAAAA
ACAGATACATCATGCAAATAACAGATAACAGATACAAAATCACATGATTAACATGCTCGTATACA
GATATTGTACTTACTTATGCTGAATAGTCAGACATATATATCGATTTCCTACTCAGATCAAACTA
TTAGATTAACAGATCACATACAATGGGTTTAGTTAGCCCTTATCGACCCTACGATAGGCGTACAG
TCGATCAGAATGACCTGTGCTACCCTAAACAAATTTTTAGAATTTTG
Found at i:20258056 original size:22 final size:22
Alignment explanation
Indices: 20258031--20258077 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
20258021 TATACTTTTA
* *
20258031 AATAATAACCTTATTATTATTG
1 AATAATAACCGTATTATCATTG
20258053 AATAATAACCGTATTATCATTG
1 AATAATAACCGTATTATCATTG
20258075 AAT
1 AAT
20258078 TGGGTTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (22 bp):
AATAATAACCGTATTATCATTG
Found at i:20261895 original size:3 final size:3
Alignment explanation
Indices: 20261887--20261915 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
20261877 CATGGCTGAA
20261887 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
20261916 AATTTGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:20262202 original size:9 final size:9
Alignment explanation
Indices: 20262188--20262218 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
20262178 GTTAAACTAA
20262188 TCGAGTTAT
1 TCGAGTTAT
*
20262197 TCGAGTTAA
1 TCGAGTTAT
20262206 TCGAGTTAT
1 TCGAGTTAT
20262215 TCGA
1 TCGA
20262219 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:20262399 original size:33 final size:32
Alignment explanation
Indices: 20262353--20262415 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 32
20262343 TTTTACTTTT
*
20262353 CCCCCAAAACTTTTACTCTCCTCCCCTCCCAA
1 CCCCCAAAACTTTTACTCCCCTCCCCTCCCAA
20262385 CCCCTCAAAACTTTTACTCCCCTCCCCTCCC
1 CCCC-CAAAACTTTTACTCCCCTCCCCTCCC
20262416 CTCCCAACCC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 4 0.14
33 25 0.86
ACGTcount: A:0.19, C:0.56, G:0.00, T:0.25
Consensus pattern (32 bp):
CCCCCAAAACTTTTACTCCCCTCCCCTCCCAA
Found at i:20264291 original size:20 final size:20
Alignment explanation
Indices: 20264253--20264291 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
20264243 TCTTTCTTTT
* **
20264253 TTCTTTTCTTTTTGGTTCTG
1 TTCTATTCTTTTTCCTTCTG
20264273 TTCTATTCTTTTTCCTTCT
1 TTCTATTCTTTTTCCTTCT
20264292 TCTTTTTCCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.03, C:0.21, G:0.08, T:0.69
Consensus pattern (20 bp):
TTCTATTCTTTTTCCTTCTG
Found at i:20273374 original size:19 final size:19
Alignment explanation
Indices: 20273350--20273387 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
20273340 TCAAGGATTA
20273350 AATTGCAAGAATTTCATTT
1 AATTGCAAGAATTTCATTT
*
20273369 AATTGCAATAATTTCATTT
1 AATTGCAAGAATTTCATTT
20273388 CCGAGCCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (19 bp):
AATTGCAAGAATTTCATTT
Found at i:20276346 original size:21 final size:21
Alignment explanation
Indices: 20276320--20276381 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
20276310 AAAACACGCC
* *
20276320 AACAGAAGCTCGTGAGTGCTA
1 AACAGAAGCTCATGAGAGCTA
*
20276341 AACAGAAGCTCATGAGAGTTA
1 AACAGAAGCTCATGAGAGCTA
* *
20276362 AACAGAAGGTCATTAGAGCT
1 AACAGAAGCTCATGAGAGCT
20276382 GATCCACCCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.19
Consensus pattern (21 bp):
AACAGAAGCTCATGAGAGCTA
Found at i:20283320 original size:21 final size:22
Alignment explanation
Indices: 20283296--20283340 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
20283286 AGAAAAAGAG
20283296 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
20283317 AAATCAAGAAAGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
20283339 AA
1 AA
20283341 CAATTTGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:20286175 original size:34 final size:34
Alignment explanation
Indices: 20286132--20286309 Score: 221
Period size: 34 Copynumber: 5.2 Consensus size: 34
20286122 CAGGTCCAAA
* *
20286132 AAGAAATGATACATGAACAGGAGAGATTCCCTGC
1 AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
* * *
20286166 AAGAAATGATGTGTTAACAGGAGAGATTCCCCGC
1 AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
* *
20286200 AACAAAATAATGCGTGAACAGGAGAGATTCCCTGC
1 AA-GAAATGATGCGTGAACAGGAGAGATTCCCTGC
* *
20286235 AATAAATGATGTGTGAACAGGAGAGATTCCCTGC
1 AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
* * * *
20286269 AACAAAATAATGCGTGAACAGGAAATATTCCCTGC
1 AA-GAAATGATGCGTGAACAGGAGAGATTCCCTGC
20286304 AAGAAA
1 AAGAAA
20286310 AGACAAGTGA
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
34 65 0.53
35 58 0.47
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (34 bp):
AAGAAATGATGCGTGAACAGGAGAGATTCCCTGC
Found at i:20286227 original size:35 final size:34
Alignment explanation
Indices: 20286145--20286310 Score: 215
Period size: 35 Copynumber: 4.8 Consensus size: 34
20286135 AAATGATACA
* * *
20286145 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAAAAATAATGCG
* *
20286179 TTAACAGGAGAGATTCCCCGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-AAAATAATGCG
* * *
20286214 TGAACAGGAGAGATTCCCTGCAATAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAAAAATAATGCG
20286248 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-AAAATAATGCG
* *
20286283 TGAACAGGAAATATTCCCTGCAAGAAAA
1 TGAACAGGAGAGATTCCCTGCAA-AAAA
20286311 GACAAGTGAA
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
34 52 0.46
35 62 0.54
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.19
Consensus pattern (34 bp):
TGAACAGGAGAGATTCCCTGCAAAAAATAATGCG
Found at i:20286320 original size:69 final size:69
Alignment explanation
Indices: 20286145--20286309 Score: 285
Period size: 69 Copynumber: 2.4 Consensus size: 69
20286135 AAATGATACA
*
20286145 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTTAACAGGAGAGATTCCCCGCAACAAAATAA
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCCGCAACAAAATAA
20286210 TGCG
66 TGCG
* *
20286214 TGAACAGGAGAGATTCCCTGCAATAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAA
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCCGCAACAAAATAA
20286279 TGCG
66 TGCG
* *
20286283 TGAACAGGAAATATTCCCTGCAAGAAA
1 TGAACAGGAGAGATTCCCTGCAAGAAA
20286310 AGACAAGTGA
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 90 1.00
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (69 bp):
TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCCGCAACAAAATAA
TGCG
Found at i:20286539 original size:18 final size:18
Alignment explanation
Indices: 20286516--20286571 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
20286506 AAGTTTCTCA
20286516 AAGTTTCTCAAAACTTTT
1 AAGTTTCTCAAAACTTTT
*
20286534 AAGTTT-ACAAAA--TTT
1 AAGTTTCTCAAAACTTTT
20286549 -AGTTTCTCAAAACTTTT
1 AAGTTTCTCAAAACTTTT
20286566 AAGTTT
1 AAGTTT
20286572 ACAAAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 5 0.16
15 8 0.25
17 8 0.25
18 11 0.34
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (18 bp):
AAGTTTCTCAAAACTTTT
Found at i:20286554 original size:32 final size:32
Alignment explanation
Indices: 20286517--20286581 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
20286507 AGTTTCTCAA
20286517 AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
1 AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
20286549 AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
1 AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
20286581 A
1 A
20286582 ATTTTTAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.43
Consensus pattern (32 bp):
AGTTTCTCAAAACTTTTAAGTTTACAAAATTT
Found at i:20286576 original size:17 final size:17
Alignment explanation
Indices: 20286524--20286577 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
20286514 CAAAGTTTCT
20286524 CAAAACTTTTAAGTTTA
1 CAAAACTTTTAAGTTTA
*
20286541 CAAAA--TTT-AGTTTCT
1 CAAAACTTTTAAGTTT-A
20286556 CAAAACTTTTAAGTTTA
1 CAAAACTTTTAAGTTTA
20286573 CAAAA
1 CAAAA
20286578 TTTAATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 5 0.16
15 8 0.26
17 13 0.42
18 5 0.16
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.39
Consensus pattern (17 bp):
CAAAACTTTTAAGTTTA
Found at i:20286686 original size:17 final size:17
Alignment explanation
Indices: 20286664--20286697 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
20286654 CTTTGGCTCA
*
20286664 AAACTTAGAATTATTTC
1 AAACTTAGAATCATTTC
20286681 AAACTTAGAATCATTTC
1 AAACTTAGAATCATTTC
20286698 TCAAAAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (17 bp):
AAACTTAGAATCATTTC
Found at i:20290876 original size:13 final size:14
Alignment explanation
Indices: 20290846--20290879 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
20290836 ATATTTGTAA
20290846 TTTGAAAACTTAAG
1 TTTGAAAACTTAAG
20290860 TTTGAAAACTT-AG
1 TTTGAAAACTTAAG
20290873 TTTGAAA
1 TTTGAAA
20290880 TTTTGGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (14 bp):
TTTGAAAACTTAAG
Found at i:20290939 original size:32 final size:32
Alignment explanation
Indices: 20290898--20290962 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
20290888 ACTTAAAAAT
20290898 TAAATTTTGTAAACTTAAAAGTTTTGAGAAAC
1 TAAATTTTGTAAACTTAAAAGTTTTGAGAAAC
20290930 TAAATTTTGTAAACTTAAAAGTTTTGAGAAAC
1 TAAATTTTGTAAACTTAAAAGTTTTGAGAAAC
20290962 T
1 T
20290963 TTGCTGATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.38
Consensus pattern (32 bp):
TAAATTTTGTAAACTTAAAAGTTTTGAGAAAC
Found at i:20290948 original size:15 final size:15
Alignment explanation
Indices: 20290897--20290948 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
20290887 AACTTAAAAA
20290897 TTAAATTTTGTAAAC
1 TTAAATTTTGTAAAC
*
20290912 TTAAAAGTTTTGAGAAAC
1 TT-AAA-TTTTG-TAAAC
20290930 -TAAATTTTGTAAAC
1 TTAAATTTTGTAAAC
20290944 TTAAA
1 TTAAA
20290949 AGTTTTGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 4 0.13
15 11 0.35
16 6 0.19
17 6 0.19
18 4 0.13
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (15 bp):
TTAAATTTTGTAAAC
Found at i:20290963 original size:18 final size:18
Alignment explanation
Indices: 20290908--20290963 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
20290898 TAAATTTTGT
20290908 AAACTTAAAAGTTTTGAG
1 AAACTTAAAAGTTTTGAG
*
20290926 AAAC-T-AAA-TTTTG-T
1 AAACTTAAAAGTTTTGAG
20290940 AAACTTAAAAGTTTTGAG
1 AAACTTAAAAGTTTTGAG
20290958 AAACTT
1 AAACTT
20290964 TGCTGATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 4 0.12
15 6 0.19
16 6 0.19
17 6 0.19
18 10 0.31
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (18 bp):
AAACTTAAAAGTTTTGAG
Found at i:20291608 original size:35 final size:35
Alignment explanation
Indices: 20291533--20291735 Score: 266
Period size: 35 Copynumber: 5.9 Consensus size: 35
20291523 AAATGATACA
* * * *
20291533 TGAACAAGAGAGATTTCCTGCAA-GAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
20291567 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
* **
20291602 TGAACAGGAGAGATTCCCTACAACAAAATAATACG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
* *
20291637 TGAACAGGAGAGATTCCCTGCAA-TAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
* *
20291671 TGAACAGGAGAGATTTCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
* * *
20291706 TGAACAGGAAATATTCCCTGCAAGAAAATA
1 TGAACAGGAGAGATTCCCTGCAACAAAATA
20291736 CAAGTGAATA
Statistics
Matches: 147, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
34 50 0.34
35 97 0.66
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (35 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
Found at i:20291615 original size:69 final size:69
Alignment explanation
Indices: 20291533--20291735 Score: 282
Period size: 69 Copynumber: 2.9 Consensus size: 69
20291523 AAATGATACA
* * * *
20291533 TGAACAAGAGAGATTTCCTGCAA-GAAATGATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
1 TGAACAGGAGAGATTTCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAA-AAAATA
20291597 ATGTG
65 ATGTG
* * * * *
20291602 TGAACAGGAGAGATTCCCTACAACAAAATAATACGTGAACAGGAGAGATTCCCTGCAATAAATGA
1 TGAACAGGAGAGATTTCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAAAAATAA
20291667 TGTG
66 TGTG
* *
20291671 TGAACAGGAGAGATTTCCTGCAACAAAATAATGCGTGAACAGGAAATATTCCCTGCAAGAAAATA
1 TGAACAGGAGAGATTTCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAA-AAAATA
20291736 CAAGTGAATA
Statistics
Matches: 116, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
69 82 0.71
70 34 0.29
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (69 bp):
TGAACAGGAGAGATTTCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAAAAATAA
TGTG
Found at i:20291713 original size:104 final size:104
Alignment explanation
Indices: 20291523--20291735 Score: 327
Period size: 104 Copynumber: 2.0 Consensus size: 104
20291513 GTCCAAAAAG
* *
20291523 AAATGATACATGAACAAGAGAGATTTCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGC
1 AAATAATACATGAACAAGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGC
* *
20291588 AACAAAATAATGTGTGAACAGGAGAGATTCCCTACAACA
66 AACAAAATAATGCGTGAACAGGAAAGATTCCCTACAACA
* * * *
20291627 AAATAATACGTGAACAGGAGAGATTCCCTGCAATAAATGATGTGTGAACAGGAGAGATTTCCTGC
1 AAATAATACATGAACAAGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGC
* * *
20291692 AACAAAATAATGCGTGAACAGGAAATATTCCCTGCAAGA
66 AACAAAATAATGCGTGAACAGGAAAGATTCCCTACAACA
20291731 AAATA
1 AAATA
20291736 CAAGTGAATA
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
104 98 1.00
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.21
Consensus pattern (104 bp):
AAATAATACATGAACAAGAGAGATTCCCTGCAAGAAATGATGTGTGAACAGGAGAGATTCCCTGC
AACAAAATAATGCGTGAACAGGAAAGATTCCCTACAACA
Found at i:20291992 original size:31 final size:33
Alignment explanation
Indices: 20291942--20292004 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
20291932 TTTCTCAAAC
20291942 TTTCTCAAAACTTTTTAAGTTTAC-AAATTTAG
1 TTTCTCAAAACTTTTTAAGTTTACAAAATTTAG
20291974 TTTCTCAAAAC-TTTTAAGTTTACAAAATTTA
1 TTTCTCAAAACTTTTTAAGTTTACAAAATTTA
20292005 ATTTTTAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 12 0.40
32 18 0.60
ACGTcount: A:0.37, C:0.13, G:0.05, T:0.46
Consensus pattern (33 bp):
TTTCTCAAAACTTTTTAAGTTTACAAAATTTAG
Found at i:20292040 original size:13 final size:14
Alignment explanation
Indices: 20292022--20292056 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
20292012 AGTTTCCAAA
20292022 TTTTCAAAC-TAAG
1 TTTTCAAACTTAAG
20292035 TTTTCAAACTTAAG
1 TTTTCAAACTTAAG
20292049 TTTTCAAA
1 TTTTCAAA
20292057 TTACAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (14 bp):
TTTTCAAACTTAAG
Found at i:20296616 original size:13 final size:13
Alignment explanation
Indices: 20296598--20296627 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
20296588 ACTAAGTTTA
20296598 AATTTTAGTACTC
1 AATTTTAGTACTC
*
20296611 AATTTTATTACTC
1 AATTTTAGTACTC
20296624 AATT
1 AATT
20296628 AGAATCTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.50
Consensus pattern (13 bp):
AATTTTAGTACTC
Found at i:20299149 original size:29 final size:30
Alignment explanation
Indices: 20299117--20299205 Score: 90
Period size: 31 Copynumber: 3.0 Consensus size: 30
20299107 TTGATTTAAT
*
20299117 GTGCAATTGTATACATG-AACTTTAATTTG
1 GTGCAATTATATACATGAAACTTTAATTTG
* * *
20299146 GTGCAATTATACACGTGAAACTCTAATTGTG
1 GTGCAATTATATACATGAAACTTTAATT-TG
* * * *
20299177 GTTCAAATCTATACTTGAAACTTTAATTT
1 GTGCAATTATATACATGAAACTTTAATTT
20299206 TGATTTAATC
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 14 0.29
30 10 0.21
31 24 0.50
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (30 bp):
GTGCAATTATATACATGAAACTTTAATTTG
Found at i:20300695 original size:43 final size:43
Alignment explanation
Indices: 20300647--20300941 Score: 351
Period size: 43 Copynumber: 6.9 Consensus size: 43
20300637 TTATGTGGAA
* * * * *
20300647 AAACACCGCTATAGAACATGACATTTACCAGTGCTCTT-CCCAT
1 AAACACCGCTAAAGAACATGACCTTTAGCAGCGCT-TTCCCCAC
*
20300690 AAACACCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
1 AAACACCGCTAAAGAACATGACCTTTAGCAGCGCTTTCCCCAC
* * *
20300733 AAACGCCGCTATAGAATATGACCTTTAGC-GCCGCTTTCCCCAC
1 AAACACCGCTAAAGAACATGACCTTTAGCAG-CGCTTTCCCCAC
*
20300776 AAACACCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
1 AAACACCGCTAAAGAACATGACCTTTAGCAGCGCTTTCCCCAC
* * * * * * * *
20300819 AAACGCTGCTATAGAATATGACGTTTAGCTGCACTTTTCCCAC
1 AAACACCGCTAAAGAACATGACCTTTAGCAGCGCTTTCCCCAC
*
20300862 AAACACTGCTAAAGAACATGACCTTTAGCAGCGCTTTCCCCAC
1 AAACACCGCTAAAGAACATGACCTTTAGCAGCGCTTTCCCCAC
** * *
20300905 AAATGCCGCTAAATAACATGACCTTTAGCGGCGCTTT
1 AAACACCGCTAAAGAACATGACCTTTAGCAGCGCTTT
20300942 TAATAAAAGT
Statistics
Matches: 217, Mismatches: 32, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
42 3 0.01
43 213 0.98
44 1 0.00
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (43 bp):
AAACACCGCTAAAGAACATGACCTTTAGCAGCGCTTTCCCCAC
Found at i:20300942 original size:86 final size:86
Alignment explanation
Indices: 20300647--20300942 Score: 412
Period size: 86 Copynumber: 3.4 Consensus size: 86
20300637 TTATGTGGAA
* * * * * * * *
20300647 AAACACCGCTATAGAACATGACATTTACCAGTGCTCTTCCCATAAACACCGCTAAAGAACATGAC
1 AAACGCCGCTATAGAATATGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAGAACATGAC
20300712 CTTTAGCGGCGCTTTCCCCAC
66 CTTTAGCGGCGCTTTCCCCAC
* *
20300733 AAACGCCGCTATAGAATATGACCTTTAGCGCCGCTTTCCCCACAAACACCGCTAAAGAACATGAC
1 AAACGCCGCTATAGAATATGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAGAACATGAC
20300798 CTTTAGCGGCGCTTTCCCCAC
66 CTTTAGCGGCGCTTTCCCCAC
* * * * *
20300819 AAACGCTGCTATAGAATATGACGTTTAGCTGCACTTTTCCCACAAACACTGCTAAAGAACATGAC
1 AAACGCCGCTATAGAATATGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAGAACATGAC
*
20300884 CTTTAGCAGCGCTTTCCCCAC
66 CTTTAGCGGCGCTTTCCCCAC
* * * *
20300905 AAATGCCGCTAAATAACATGACCTTTAGCGGCGCTTTT
1 AAACGCCGCTATAGAATATGACCTTTAGCGGCGCTTTT
20300943 AATAAAAGTG
Statistics
Matches: 184, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 184 1.00
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.24
Consensus pattern (86 bp):
AAACGCCGCTATAGAATATGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAGAACATGAC
CTTTAGCGGCGCTTTCCCCAC
Found at i:20301340 original size:21 final size:21
Alignment explanation
Indices: 20301314--20301358 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
20301304 CTTTGCTTTA
**
20301314 CTTCCCTCGTTGCTGCCTCTG
1 CTTCCCTCACTGCTGCCTCTG
20301335 CTTCCCTCACTGCTGCCTCTG
1 CTTCCCTCACTGCTGCCTCTG
20301356 CTT
1 CTT
20301359 TAAGCTGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.44, G:0.16, T:0.38
Consensus pattern (21 bp):
CTTCCCTCACTGCTGCCTCTG
Found at i:20312590 original size:9 final size:9
Alignment explanation
Indices: 20312576--20312623 Score: 51
Period size: 9 Copynumber: 4.9 Consensus size: 9
20312566 TAAGTATAAT
20312576 TAAGTTATG
1 TAAGTTATG
20312585 TAAGTTATG
1 TAAGTTATG
*
20312594 ATATATATTTATG
1 ---TA-AGTTATG
20312607 TAAGTTATG
1 TAAGTTATG
20312616 TAAGTTAT
1 TAAGTTAT
20312624 AAAATTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 23 0.70
10 2 0.06
12 2 0.06
13 6 0.18
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:20313328 original size:29 final size:30
Alignment explanation
Indices: 20313269--20313340 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
20313259 GATTTGGATT
*
20313269 TAAATTTTTAAAATAATATAATTTGAGTAA
1 TAAATTTTTAAAATAATATAATTTCAGTAA
20313299 TAAATTATTT-AAA-AATATAATATTCA-TAA
1 TAAATT-TTTAAAATAATATAAT-TTCAGTAA
*
20313328 T-TATTTTTAAAAT
1 TAAATTTTTAAAAT
20313341 TTATGAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
27 3 0.08
28 6 0.17
29 12 0.33
30 12 0.33
31 3 0.08
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (30 bp):
TAAATTTTTAAAATAATATAATTTCAGTAA
Found at i:20319011 original size:110 final size:111
Alignment explanation
Indices: 20318811--20319038 Score: 300
Period size: 110 Copynumber: 2.0 Consensus size: 111
20318801 CAAATTATAC
* **
20318811 AATTACAAGTCATGCACATCATCTAAGATAGGTAATGTATCCAAGAATGGTTCAAAATATAATAT
1 AATTACAAGTCATGCACATCATCTAAGATAGGTAACGTA--CAAGAAAAGTTCAAAATATAATAT
*
20318876 TATCAAAGAAAGTTCAAAGAGGAAGTA-TCCAAAGTCCTAACAAAACCT
64 TACCAAAGAAAGTTCAAAGAGGAAGTACT-CAAAGTCCTAACAAAACCT
** *
20318924 AATTACAAGTCATGCGTATCATTTAAGATTA-GTAACGTA-AAGAAAAGTTCAAAATATAATATT
1 AATTACAAGTCATGCACATCATCTAAGA-TAGGTAACGTACAAGAAAAGTTCAAAATATAATATT
** * *
20318987 ACCATGGAAAGTTCAAAGATGAAGTACTCAAAGTTCTAACAAAACCT
65 ACCAAAGAAAGTTCAAAGAGGAAGTACTCAAAGTCCTAACAAAACCT
20319034 AATTA
1 AATTA
20319039 TACAAAGCCC
Statistics
Matches: 102, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
110 67 0.66
111 1 0.01
113 32 0.31
114 2 0.02
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (111 bp):
AATTACAAGTCATGCACATCATCTAAGATAGGTAACGTACAAGAAAAGTTCAAAATATAATATTA
CCAAAGAAAGTTCAAAGAGGAAGTACTCAAAGTCCTAACAAAACCT
Found at i:20324632 original size:161 final size:163
Alignment explanation
Indices: 20324444--20324767 Score: 634
Period size: 161 Copynumber: 2.0 Consensus size: 163
20324434 TATAAATTTT
20324444 AATAAATTAATAGTATTGTATGAATTCTAAAAAAATAATCATATATATTTATATTTATATTTATT
1 AATAAATTAATAGTATTGTATGAATTCTAAAAAAATAATCATATATATTTATATTTATATTTATT
20324509 CTTATCATATATATTAAAAAATTTAAATATTATATCTAATTTTGTGAACTCTAATTTGATGTTTC
66 CTTATCATATATATTAAAAAATTTAAATATTATATCTAATTTTGTGAACTCTAATTTGATGTTTC
20324574 ATACCATGTCGCCTAATAACTTTGAAAAATAGG
131 ATACCATGTCGCCTAATAACTTTGAAAAATAGG
20324607 AATAAATT-A-AGTATTGTATGAATTCTAAAAAAATAATCATATATATTTATATTTATATTTATT
1 AATAAATTAATAGTATTGTATGAATTCTAAAAAAATAATCATATATATTTATATTTATATTTATT
20324670 CTTATCATATATATTAAAAAATTTAAATATTATATCTAATTTTGTGAACTCTAATTTGATGTTTC
66 CTTATCATATATATTAAAAAATTTAAATATTATATCTAATTTTGTGAACTCTAATTTGATGTTTC
20324735 ATACCATGTCGCCTAATAACTTTGAAAAATAGG
131 ATACCATGTCGCCTAATAACTTTGAAAAATAGG
20324768 TTTTCACTTG
Statistics
Matches: 161, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
161 152 0.94
162 1 0.01
163 8 0.05
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (163 bp):
AATAAATTAATAGTATTGTATGAATTCTAAAAAAATAATCATATATATTTATATTTATATTTATT
CTTATCATATATATTAAAAAATTTAAATATTATATCTAATTTTGTGAACTCTAATTTGATGTTTC
ATACCATGTCGCCTAATAACTTTGAAAAATAGG
Found at i:20336180 original size:15 final size:15
Alignment explanation
Indices: 20336160--20336188 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
20336150 TGTTAAAAAA
20336160 TGGATAATTTTGTTG
1 TGGATAATTTTGTTG
20336175 TGGATAATTTTGTT
1 TGGATAATTTTGTT
20336189 ATAGATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (15 bp):
TGGATAATTTTGTTG
Found at i:20336370 original size:17 final size:18
Alignment explanation
Indices: 20336340--20336373 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
20336330 TATTTAATCT
20336340 AATTCATTTAATATATTC
1 AATTCATTTAATATATTC
*
20336358 AATT-ATTTTATATATT
1 AATTCATTTAATATATT
20336374 AAATATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
AATTCATTTAATATATTC
Found at i:20347471 original size:21 final size:18
Alignment explanation
Indices: 20347430--20347472 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 18
20347420 AATAAATTTT
*
20347430 TTTTATTATTTTAAATTA
1 TTTTATTATTTTAAATAA
20347448 TTTTATTAATTTTTACAATAA
1 TTTTATT-A-TTTTA-AATAA
20347469 TTTT
1 TTTT
20347473 GTAATTACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 1 0.05
20 5 0.24
21 8 0.38
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTATTATTTTAAATAA
Found at i:20350979 original size:13 final size:13
Alignment explanation
Indices: 20350963--20350990 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
20350953 AAAACACGCT
20350963 AATAAAAAGTAAA
1 AATAAAAAGTAAA
20350976 AATAAAAAGTAAA
1 AATAAAAAGTAAA
20350989 AA
1 AA
20350991 AAACTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (13 bp):
AATAAAAAGTAAA
Found at i:20350999 original size:16 final size:17
Alignment explanation
Indices: 20350973--20351014 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
20350963 AATAAAAAGT
20350973 AAAAA-TAAAA-AGTAAA
1 AAAAACTAAAATA-TAAA
20350989 AAAAACTAAAATATAAA
1 AAAAACTAAAATATAAA
20351006 AAAAACTAA
1 AAAAACTAA
20351015 TGGAATGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.21
17 18 0.75
18 1 0.04
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAAACTAAAATATAAA
Found at i:20357176 original size:28 final size:28
Alignment explanation
Indices: 20357143--20357241 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
20357133 TAATGAGATT
* * *
20357143 AGCACTAAGTGTGTGAGTTTAATTG-AA
1 AGCACTAAGTGTGCGAGTATAATGGTAA
20357170 ATGCACTAAGTGTGCGAGTATAATGGTAA
1 A-GCACTAAGTGTGCGAGTATAATGGTAA
* * ** *
20357199 AGCACTAAGTGTGCGAGTGTGATTATTA
1 AGCACTAAGTGTGCGAGTATAATGGTAA
20357227 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
20357242 TACTTATTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 58 0.94
29 3 0.05
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTATAATGGTAA
Found at i:20359168 original size:36 final size:39
Alignment explanation
Indices: 20359108--20359183 Score: 113
Period size: 36 Copynumber: 2.0 Consensus size: 39
20359098 ATAAACATTA
* *
20359108 AAAAATTATTTTAAAAATTTAAAAATAAAA-ATAT-TTT
1 AAAAAGTATTTTAAAAATTAAAAAATAAAATATATATTT
20359145 AAAAAGTATTTT-AAAATTAAAAAATAAAATATATATTT
1 AAAAAGTATTTTAAAAATTAAAAAATAAAATATATATTT
20359183 A
1 A
20359184 TTATATTCGG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
36 16 0.46
37 15 0.43
38 4 0.11
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (39 bp):
AAAAAGTATTTTAAAAATTAAAAAATAAAATATATATTT
Found at i:20365872 original size:3 final size:3
Alignment explanation
Indices: 20365864--20365937 Score: 94
Period size: 3 Copynumber: 24.7 Consensus size: 3
20365854 ACAATTTAAG
* ** * * *
20365864 AAT AAT AAT ATT AAT AAT AAT GGT GAT GAT GAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20365912 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
20365938 CCTAAAGTTT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:20377377 original size:24 final size:24
Alignment explanation
Indices: 20377319--20377377 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
20377309 TTTTATGTCC
20377319 TAAA-ATTACAGCGGACTTAACCT
1 TAAAGATTACAGCGGACTTAACCT
* *
20377342 TAAAGATCACAGCGGA-TTGAACTT
1 TAAAGATTACAGCGGACTT-AACCT
*
20377366 TGAAGATTACAG
1 TAAAGATTACAG
20377378 TGGGGGCAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 6 0.20
24 24 0.80
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (24 bp):
TAAAGATTACAGCGGACTTAACCT
Found at i:20377902 original size:89 final size:89
Alignment explanation
Indices: 20377783--20378009 Score: 348
Period size: 89 Copynumber: 2.6 Consensus size: 89
20377773 GCAGCAAAGC
* * *
20377783 AGATCGAAGACACCAGCCTCG-CCTCTCTGAGTTTGCAGCGGAGCAGACTGAATATGGAAGATCT
1 AGATCAAAGACACAAGCCT-GACCTCCCTGAGTTTGCAGCGGAGCAGACTGAATATGGAAGATCT
20377847 TGTCTTCCTACACCGATAGCGAAGT
65 TGTCTTCCTACACCGATAGCGAAGT
* *
20377872 AGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAAACTGAATATGGCAGATCTT
1 AGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAATATGGAAGATCTT
20377937 GTCTTCCTACACCGATAGCGAAGT
66 GTCTTCCTACACCGATAGCGAAGT
* * * * *
20377961 AGATCAAAGACACACGCCTGATCTCCCTGTGTTTGCAGAGGAGTAGACT
1 AGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACT
20378010 AAAAGCAGTA
Statistics
Matches: 126, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
88 1 0.01
89 125 0.99
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.22
Consensus pattern (89 bp):
AGATCAAAGACACAAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAATATGGAAGATCTT
GTCTTCCTACACCGATAGCGAAGT
Found at i:20378030 original size:89 final size:89
Alignment explanation
Indices: 20377751--20378003 Score: 321
Period size: 89 Copynumber: 2.9 Consensus size: 89
20377741 ACTAGAAGCA
** ** * * * * *
20377751 GCAGATCTTGTCTTCCTGTA-CGGCAGCAAAGCAGATCGAAGACACCAGCCTCG-CCTCTCTGAG
1 GCAGATCTTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCT-GACCTCCCTGAG
* * *
20377814 TTTGCAGCGGAGCAGACTGAATATG
65 TTTGCAGAGGAGCAAACTGAATAAG
*
20377839 GAAGATCTTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
1 GCAGATCTTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
* *
20377904 TTGCAGCGGAGCAAACTGAATATG
66 TTGCAGAGGAGCAAACTGAATAAG
* * *
20377928 GCAGATCTTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACACGCCTGATCTCCCTGTGT
1 GCAGATCTTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
20377993 TTGCAGAGGAG
66 TTGCAGAGGAG
20378004 TAGACTAAAA
Statistics
Matches: 147, Mismatches: 16, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
88 18 0.12
89 129 0.88
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (89 bp):
GCAGATCTTGTCTTCCTACACCGATAGCGAAGTAGATCAAAGACACAAGCCTGACCTCCCTGAGT
TTGCAGAGGAGCAAACTGAATAAG
Found at i:20378394 original size:44 final size:44
Alignment explanation
Indices: 20378329--20378574 Score: 162
Period size: 44 Copynumber: 5.6 Consensus size: 44
20378319 CAGATCATAT
* * *
20378329 CAAACTTTGTCTCTCTGAAGTTGCAGTAGAGCAGGTTGAA-ATA
1 CAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGATA
* * *
20378372 GCAAACCTTATC-CCCATGAAGTTGCAGTGGGGCAAGTTGAAGATA
1 -CAAACCTTATCTCCC-TGAAGTTGCAGTAGAGCAGGTTGAAGATA
** * * *
20378417 CAAGTCTTATCTCCCTGAAGTTGCAGTCGAGCAGATTGAAGTTA
1 CAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGATA
** * * * *
20378461 CTAGTCC-AATCTTCCTGAAGTTGCAGTGGAGC-GGATTAAAATGATA
1 C-AAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGG-TT-GAA-GATA
* * ** *
20378507 -GATCC-TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATA
1 CAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGATA
* * *
20378549 GCAAATCGTATTTCCCTGAAGTTGCA
1 -CAAACCTTATCTCCCTGAAGTTGCA
20378575 ATGGAACAGA
Statistics
Matches: 158, Mismatches: 33, Indels: 21
0.75 0.16 0.10
Matches are distributed among these distances:
42 4 0.03
43 6 0.04
44 118 0.75
45 27 0.17
46 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGATA
Found at i:20378720 original size:44 final size:44
Alignment explanation
Indices: 20378650--20378801 Score: 141
Period size: 44 Copynumber: 3.5 Consensus size: 44
20378640 TCAAACTTTG
* * ** * *
20378650 TCTCTCTGAAGTTGCAGTAGAACAAGTTGAAA-TTACAATTCTTA
1 TCTCCCTGAAGTTGCAGTGGGGCAAGTT-AAAGATACAAGTCTTA
*
20378694 TC-CCCTTGAAGTTGCAGTGGGGCAAGTTAAAGATACGAGTCTTA
1 TCTCCC-TGAAGTTGCAGTGGGGCAAGTTAAAGATACAAGTCTTA
* *
20378738 TCTCCCTGAAGTTGAAGTGGGGCAAGTCAAA-AT-CATGAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGGGCAAGTTAAAGATACA--AGTCTTA
* *
20378782 TCTCTCTGATGTTGCAGTGG
1 TCTCCCTGAAGTTGCAGTGG
20378802 AGTATACTAG
Statistics
Matches: 90, Mismatches: 13, Indels: 10
0.80 0.12 0.09
Matches are distributed among these distances:
42 1 0.01
43 7 0.08
44 79 0.88
45 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGGGCAAGTTAAAGATACAAGTCTTA
Found at i:20378798 original size:312 final size:312
Alignment explanation
Indices: 20378200--20378803 Score: 937
Period size: 312 Copynumber: 1.9 Consensus size: 312
20378190 CCACCAATCT
* * *
20378200 TATCTCCCTGAAGTTGTAGTGGAGCATATTAAAGATAGCAAATCGTATTTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATAGCAAATCGTATTTCCCTGAAGTTGCAAT
* *
20378265 GGAACAGATTAAATCTATCATAACAGATCTCGTCTCTCTGAAGTTGCAGTAAAGCAGATCATATC
66 GGAACAGATTAAATCTATCATAACAGATCTCGTCTCTCTAAAGTTCCAGTAAAGCAGATCATATC
* *
20378330 AAACTTTGTCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAGCAAACCTTATCCCCATGAAGTT
131 AAACTTTGTCTCTCTGAAGTTGCAGTAGAACAAGTTGAAATAGCAAACCTTATCCCCATGAAGTT
* * ** * *
20378395 GCAGTGGGGCAAGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTCGAGCAGATTGAAGTT
196 GCAGTGGGGCAAGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGAAGTCGAGCAGATCAAAATC
20378460 ACTAGTCCAATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATGATAGATCC
261 ACTAGTCCAATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATGATAGATCC
20378512 TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATAGCAAATCGTATTTCCCTGAAGTTGCAAT
1 TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATAGCAAATCGTATTTCCCTGAAGTTGCAAT
*
20378577 GGAACAGATTAAATCTATCATAACAGATCTCGTCTCTCTAAAGTTCCAGTAGAGCAGATCATATC
66 GGAACAGATTAAATCTATCATAACAGATCTCGTCTCTCTAAAGTTCCAGTAAAGCAGATCATATC
** *
20378642 AAACTTTGTCTCTCTGAAGTTGCAGTAGAACAAGTTGAAATTA-CAATTCTTATCCCCTTGAAGT
131 AAACTTTGTCTCTCTGAAGTTGCAGTAGAACAAGTTGAAA-TAGCAAACCTTATCCCCATGAAGT
* * *
20378706 TGCAGTGGGGCAAGTTAAAGATACGAGTCTTATCTCCCTGAAGTTGAAGTGGGGCA-AGTCAAAA
195 TGCAGTGGGGCAAGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGAAGTCGAGCAGA-TCAAAA
** *
20378770 TCA-TGAGTCTTATC-TCTCTGATGTTGCAGTGGAG
259 TCACT-AGTCCAATCTTC-CTGAAGTTGCAGTGGAG
20378804 TATACTAGAA
Statistics
Matches: 265, Mismatches: 23, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
311 4 0.02
312 259 0.98
313 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (312 bp):
TATCTCCCTGAAGTTGCAGTAGAGCATATTAAAGATAGCAAATCGTATTTCCCTGAAGTTGCAAT
GGAACAGATTAAATCTATCATAACAGATCTCGTCTCTCTAAAGTTCCAGTAAAGCAGATCATATC
AAACTTTGTCTCTCTGAAGTTGCAGTAGAACAAGTTGAAATAGCAAACCTTATCCCCATGAAGTT
GCAGTGGGGCAAGTTAAAGATACAAGTCTTATCTCCCTGAAGTTGAAGTCGAGCAGATCAAAATC
ACTAGTCCAATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATGATAGATCC
Found at i:20379150 original size:44 final size:45
Alignment explanation
Indices: 20379087--20379249 Score: 170
Period size: 44 Copynumber: 3.7 Consensus size: 45
20379077 CATTTCAAAC
* * **
20379087 CTTATCTCCCCGAAGTTGCAGTGGGGCAGGTTGAAGATA-CAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGT
* * * * *
20379131 CTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGCGAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGT
* * *
20379176 CTTATCTCCCTAAAGTTGCAGTGGAACAGACTGAAGCTA-CTAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC-AAGT
* *
20379220 CCTATCTCCCTGAAGTTGTAGTGGAGCAGA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA
20379250 TTAAAATGAT
Statistics
Matches: 96, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
44 59 0.61
45 37 0.39
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGT
Found at i:20379307 original size:228 final size:225
Alignment explanation
Indices: 20378892--20379389 Score: 624
Period size: 228 Copynumber: 2.2 Consensus size: 225
20378882 GGAAAACAAA
* * *
20378892 TTGAAGCTACAAGTCTTATCCCACTGAGGTTGCAGTAGAATAGACTGAAGATAGCAGATATTACC
1 TTGAAGATACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGCAGATATTACC
** * * * * * * *
20378957 TCTTTGAAGTTACAGTAGAGCAGATCACGATGAGTCTTATCTCCCTGAAGTTACAGTGGATCGGA
66 TCCCTAAAGTTACAGTAGAACAGATAACGATGAATCCTATCTCCCTGAAGTTACAGTGGAGCAGA
* * * *
20379022 CCATAATAATAAATCATATACCTCTGAAGTTGCAGTAGGTCGACTTAGATTTTATCATTTCAAAC
131 CCAAAATAATAAATCATATACCTCTGAAGTTGCAGTAGGTCGAATTAGATCTTATCATATCAAAC
**
20379087 CTTATCTCCCCGAAGTTGCAGTGGGGCAGG
196 CTTATCTCCCCGAAGTTGCAGTGGAACAGG
* *
20379117 TTGAAGATACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGC-GAGTCTTAT
1 TTGAAGATACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGCAGA-TATTAC
* * * **
20379181 CTCCCTAAAGTTGCAGTGGAACAGACTGAAGCTACT-AATCCTATCTCCCTGAAGTTGTAGTGGA
65 CTCCCTAAAGTTACAGTAGAACAGA-T-AA-CGA-TGAATCCTATCTCCCTGAAGTTACAGTGGA
** * *
20379245 GCAGATTAAAATGATGAATCATATACCTCTGAAGTTGCAGTAGGTCGAATTAGATCTTATCATAT
126 GCAGACCAAAATAATAAATCATATACCTCTGAAGTTGCAGTAGGTCGAATTAGATCTTATCATAT
* *
20379310 CAAACCTTATCTCCCTGAAGTTGCGGTGGAACAGG
191 CAAACCTTATCTCCCCGAAGTTGCAGTGGAACAGG
* * *
20379345 TTG-AGATACAAGTCTTATCTCCCTGACGTTGCAGTGGAGTAGACT
1 TTGAAGATACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACT
20379390 AAAACCACAA
Statistics
Matches: 234, Mismatches: 34, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
224 2 0.01
225 75 0.32
226 1 0.00
227 40 0.17
228 115 0.49
229 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (225 bp):
TTGAAGATACAAGTCTTATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGCAGATATTACC
TCCCTAAAGTTACAGTAGAACAGATAACGATGAATCCTATCTCCCTGAAGTTACAGTGGAGCAGA
CCAAAATAATAAATCATATACCTCTGAAGTTGCAGTAGGTCGAATTAGATCTTATCATATCAAAC
CTTATCTCCCCGAAGTTGCAGTGGAACAGG
Found at i:20380913 original size:2 final size:2
Alignment explanation
Indices: 20380859--20380902 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
20380849 TTTATAAACC
20380859 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20380901 TA
1 TA
20380903 CTTACATATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20389726 original size:16 final size:16
Alignment explanation
Indices: 20389694--20389726 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
20389684 TTCGTACATA
20389694 ATTTTATAAATAGATT
1 ATTTTATAAATAGATT
20389710 ATTTTCATAAATA-ATT
1 ATTTT-ATAAATAGATT
20389726 A
1 A
20389727 AATTATTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTTTATAAATAGATT
Found at i:20391403 original size:563 final size:564
Alignment explanation
Indices: 20390329--20391463 Score: 2263
Period size: 563 Copynumber: 2.0 Consensus size: 564
20390319 AGGATATTCA
20390329 ATTGTTTAGTCAAATGAAAAGATCGCAACCCAATACGTTAGGGCACAATTTCTCAAAATCCTAAA
1 ATTGTTTAGTCAAATGAAAAGATCGCAACCCAATACGTTAGGGCACAATTTCTCAAAATCCTAAA
20390394 CATCGAATATTGCCTTTATTATTTTTTAGAAAAAATCCTCATCTCGAGAAAACAACGTGACATCG
66 CATCGAATATTGCCTTTATTATTTTTTAGAAAAAATCCTCATCTCGAGAAAACAACGTGACATCG
20390459 CAACCTCACGAAAGAGTAGCTTCTCACTCCCACTTAAAAATGGTAAGACTACACAGTCTTTATGC
131 CAACCTCACGAAAGAGTAGCTTCTCACTCCCACTTAAAAATGGTAAGACTACACAGTCTTTATGC
20390524 AATATGGTGCCAAGTTATAAAACTCAATTTACAGTAATCATACCACAAATAAATGCAGTGAAAGA
196 AATATGGTGCCAAGTTATAAAACTCAATTTACAGTAATCATACCACAAATAAATGCAGTGAAAGA
20390589 ATCGTATTTTTCAAATCAAATTTCTAATTTTCAACAATAAGACAAAAAACAATCAATTTTACGGC
261 ATCGTATTTTTCAAATCAAATTTCTAATTTTCAACAATAAGACAAAAAACAATCAATTTTACGGC
20390654 TTGACTCTCTAAGTCCCCAGCGGAGTCGCCAAGCTGTCGAAACTATTTTTATATTTAAAAAAAAC
326 TTGACTCTCTAAGTCCCCAGCGGAGTCGCCAAGCTGTCGAAACTATTTTTATATTTAAAAAAAAC
20390719 AGGAATCGACTTTGAAAATGAAAATGGGAGTCGCCACCGATCTTTTATTGAGGTGCGATCGGTTC
391 AGGAATCGACTTTGAAAATGAAAATGGGAGTCGCCACCGATCTTTTATTGAGGTGCGATCGGTTC
20390784 ACCTTAAAAACAATTTTGGTCTGCGAAATTTGAGAAAACAGGTTCTGGAGTCGGTTACGCACGAG
456 ACCTTAAAAACAATTTTGGTCTGCGAAATTTGAGAAAACAGGTTCTGGAGTCGGTTACGCACGAG
20390849 GAAGGGTTTGCACCCTCATAACGCCCAAAATTGGTACCGAATTG
521 GAAGGGTTTGCACCCTCATAACGCCCAAAATTGGTACCGAATTG
20390893 ATTGTTT-GTCAAATGAAAAGATCGCAACCCAATACGTTAGGGCACAATTTCTCAAAATCCTAAA
1 ATTGTTTAGTCAAATGAAAAGATCGCAACCCAATACGTTAGGGCACAATTTCTCAAAATCCTAAA
20390957 CATCGAATATTGCCTTTATTATTTTTTAGAAAAAATCCTCATCTCGAGAAAACAACGTGACATCG
66 CATCGAATATTGCCTTTATTATTTTTTAGAAAAAATCCTCATCTCGAGAAAACAACGTGACATCG
20391022 CAACCTCACGAAAGAGTAGCTTCTCACTCCCACTTAAAAATGGTAAGACTACACAGTCTTTATGC
131 CAACCTCACGAAAGAGTAGCTTCTCACTCCCACTTAAAAATGGTAAGACTACACAGTCTTTATGC
20391087 AATATGGTGCCAAGTTATAAAACTCAATTTACAGTAATCATACCACAAATAAATGCAGTGAAAGA
196 AATATGGTGCCAAGTTATAAAACTCAATTTACAGTAATCATACCACAAATAAATGCAGTGAAAGA
20391152 ATCGTATTTTTCAAATCAAATTTCTAATTTTCAACAATAAGACAAAAAACAATCAATTTTACGGC
261 ATCGTATTTTTCAAATCAAATTTCTAATTTTCAACAATAAGACAAAAAACAATCAATTTTACGGC
20391217 TTGACTCTCTAAGTCCCCAGCGGAGTCGCCAAGCTGTCGAAACTATTTTTATATTTAAAAAAAAC
326 TTGACTCTCTAAGTCCCCAGCGGAGTCGCCAAGCTGTCGAAACTATTTTTATATTTAAAAAAAAC
20391282 AGGAATCGACTTTGAAAATGAAAATGGGAGTCGCCACCGATCTTTTATTGAGGTGCGATCGGTTC
391 AGGAATCGACTTTGAAAATGAAAATGGGAGTCGCCACCGATCTTTTATTGAGGTGCGATCGGTTC
20391347 ACCTTAAAAACAATTTTGGTCTGCGAAATTTGAGAAAACAGGTTCTGGAGTCGGTTACGCACGAG
456 ACCTTAAAAACAATTTTGGTCTGCGAAATTTGAGAAAACAGGTTCTGGAGTCGGTTACGCACGAG
20391412 GAAGGGTTTGCACCCTCATAACGCCCAAAATTGGTACCGAATTG
521 GAAGGGTTTGCACCCTCATAACGCCCAAAATTGGTACCGAATTG
20391456 ATTGTTTA
1 ATTGTTTA
20391464 ATGTCTTAGT
Statistics
Matches: 570, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
563 563 0.99
564 7 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (564 bp):
ATTGTTTAGTCAAATGAAAAGATCGCAACCCAATACGTTAGGGCACAATTTCTCAAAATCCTAAA
CATCGAATATTGCCTTTATTATTTTTTAGAAAAAATCCTCATCTCGAGAAAACAACGTGACATCG
CAACCTCACGAAAGAGTAGCTTCTCACTCCCACTTAAAAATGGTAAGACTACACAGTCTTTATGC
AATATGGTGCCAAGTTATAAAACTCAATTTACAGTAATCATACCACAAATAAATGCAGTGAAAGA
ATCGTATTTTTCAAATCAAATTTCTAATTTTCAACAATAAGACAAAAAACAATCAATTTTACGGC
TTGACTCTCTAAGTCCCCAGCGGAGTCGCCAAGCTGTCGAAACTATTTTTATATTTAAAAAAAAC
AGGAATCGACTTTGAAAATGAAAATGGGAGTCGCCACCGATCTTTTATTGAGGTGCGATCGGTTC
ACCTTAAAAACAATTTTGGTCTGCGAAATTTGAGAAAACAGGTTCTGGAGTCGGTTACGCACGAG
GAAGGGTTTGCACCCTCATAACGCCCAAAATTGGTACCGAATTG
Found at i:20400494 original size:25 final size:25
Alignment explanation
Indices: 20400465--20400513 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
20400455 TATTATTTTC
*
20400465 TGTGTTAATAATTT-GTGAATTAATA
1 TGTGTGAA-AATTTCGTGAATTAATA
*
20400490 TGTGTGAAAATTTCGTGATTTAAT
1 TGTGTGAAAATTTCGTGAATTAAT
20400514 TTTATTGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (25 bp):
TGTGTGAAAATTTCGTGAATTAATA
Found at i:20401665 original size:42 final size:42
Alignment explanation
Indices: 20401615--20401714 Score: 164
Period size: 42 Copynumber: 2.4 Consensus size: 42
20401605 CTATACGAGT
** * *
20401615 GGCACTAAGTGTGCGAAATTAAAATGACGATGTTGAATAACG
1 GGCACTAAGTGTGCGAAACAAAAATGACGATGTCGAATAACA
20401657 GGCACTAAGTGTGCGAAACAAAAATGACGATGTCGAATAACA
1 GGCACTAAGTGTGCGAAACAAAAATGACGATGTCGAATAACA
20401699 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
20401715 TACTAAGATC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.20
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAACAAAAATGACGATGTCGAATAACA
Found at i:20406064 original size:3 final size:3
Alignment explanation
Indices: 20406056--20406089 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
20406046 CAAAAAATGC
20406056 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
20406090 ATATGGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:20415289 original size:21 final size:21
Alignment explanation
Indices: 20415265--20415316 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
20415255 CTTTGATTTT
*
20415265 AATTTTTATTA-CTTATTTAAG
1 AATTTTTATTATCATA-TTAAG
*
20415286 AATTATTT-TTATCATATTAAT
1 AATT-TTTATTATCATATTAAG
20415307 AATTTTTATT
1 AATTTTTATT
20415317 TTTAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 3 0.12
21 17 0.65
22 6 0.23
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (21 bp):
AATTTTTATTATCATATTAAG
Found at i:20421716 original size:64 final size:64
Alignment explanation
Indices: 20421525--20421998 Score: 419
Period size: 62 Copynumber: 7.4 Consensus size: 64
20421515 AGTTTCAGGC
* * * * ** *
20421525 TTTCAGCTAAAAGATAAAGCGATATAGCGTC-AAACTGAGTG-AAAAAACATAAAGAAATTAAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
* * * * *** * *
20421587 TTTCAGCTAAAAGATAGAGCTGAATAGCATCAAAACCAAGT--TAAAAACATAAAAATTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
* * *
20421649 TTTCAGATAAAAGATAAA-CTAAATAGCGTAAAAAATGAGTGAAAAAAAACATAATGATTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTG-AAAAAAACATAAAGATTTTCAG
* ** * *
20421713 TTTCAGCTAAAAGGCAAAGCTAAATAGCGTAAAAATTAAGTG-AAAAAACA-AAACGATTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAA-GATTTTCAG
* * * * * * * *
20421776 TTTCAGCTAAAAAGATAAAGCTAAATAGAGTCAAATTTTAGTTAAAAATACATTAAGATTTACAG
1 TTTCAGAT-AAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
**
20421841 TTTCAGACTTTCAGCTCAAAGATAAAGCTAAATAGCGTCAAAATTTTGTGGAAAAAAA-ATAAAG
1 TTTCAGA---T-A----AAAGATAAAGCTAAATAGCGTCAAAATTGAGT-GAAAAAAACATAAAG
20421905 ATTTTCAG
57 ATTTTCAG
* * *
20421913 -TTCAGATAAAAGATAAA-CTAAATAGCATCAAAATTGAGTGAAAAAGACGTAAAGATTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
* *
20421975 TTTCAGTTAAAAGATAAAGATAAA
1 TTTCAGATAAAAGATAAAGCTAAA
20421999 GATAAATAAC
Statistics
Matches: 337, Mismatches: 55, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
61 23 0.07
62 92 0.27
63 57 0.17
64 64 0.19
65 42 0.12
66 2 0.01
67 1 0.00
68 3 0.01
71 6 0.02
72 41 0.12
73 6 0.02
ACGTcount: A:0.49, C:0.11, G:0.15, T:0.26
Consensus pattern (64 bp):
TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
Found at i:20421896 original size:136 final size:131
Alignment explanation
Indices: 20421585--20422036 Score: 404
Period size: 134 Copynumber: 3.4 Consensus size: 131
20421575 AAAGAAATTA
* * * ** * * *
20421585 AGTTTCAGCTAAAAGATAGAGCTGAATAGCATCAAAACCAAGT--TAAAAACATAAAAATTTTCA
1 AGTTTCAGCT-AAAGATAAAGCTAAATAGCGTCAAAATTAAGTGGAAAAAAAATAAAGATTTTCA
* * * * *
20421648 GTTTCAGATAAAAGATAAACTAAATAGCGTAAAAAATGAGTGAAAAAAAACATAATGA--T----
65 G-TTCAGATAAAAGATAAACTAAATAGCATCAAAATTGAGTG-AAAAAGACATAAAGATTTACAG
20421707 TTTC
128 TTTC
** * *
20421711 AGTTTCAGCTAAAAGGCAAAGCTAAATAGCGTAAAAATTAAGT-GAAAAAACAA-AACGATTTTC
1 AGTTTCAGCT-AAAGATAAAGCTAAATAGCGTCAAAATTAAGTGGAAAAAA-AATAAAGATTTTC
* * * * * *
20421774 AGTTTCAGCTAAAAAGATAAAGCTAAATAG-AGTCAAATTTTAGTTAAAAATACATTAAGATTTA
64 AG-TTCAGAT-AAAAGATAAA-CTAAATAGCA-TCAAAATTGAGTGAAAAAGACATAAAGATTTA
20421838 CAGTTTC
125 CAGTTTC
**
20421845 AGACTTTCAGCTCAAAGATAAAGCTAAATAGCGTCAAAATTTTGTGGAAAAAAAATAAAGATTTT
1 AG--TTTCAGCT-AAAGATAAAGCTAAATAGCGTCAAAATTAAGTGGAAAAAAAATAAAGATTTT
* *
20421910 CAGTTCAGATAAAAGATAAACTAAATAGCATCAAAATTGAGTGAAAAAGACGTAAAGATTTTCAG
63 CAGTTCAGATAAAAGATAAACTAAATAGCATCAAAATTGAGTGAAAAAGACATAAAGATTTACAG
20421975 TTTC
128 TTTC
** * * * *
20421979 AGTTAAAAGATAAAGATAAAGATAAATAACGTCAAAATTGAGTGGAAAAAATAATAAA
1 AGTT-TCAGCTAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGGAAAAAA-AATAAA
20422037 ATAAAAATGA
Statistics
Matches: 264, Mismatches: 44, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
126 35 0.13
127 22 0.08
128 23 0.09
129 16 0.06
130 1 0.00
132 38 0.14
133 9 0.03
134 48 0.18
135 11 0.04
136 43 0.16
137 18 0.07
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.26
Consensus pattern (131 bp):
AGTTTCAGCTAAAGATAAAGCTAAATAGCGTCAAAATTAAGTGGAAAAAAAATAAAGATTTTCAG
TTCAGATAAAAGATAAACTAAATAGCATCAAAATTGAGTGAAAAAGACATAAAGATTTACAGTTT
C
Found at i:20421906 original size:72 final size:70
Alignment explanation
Indices: 20421770--20422036 Score: 216
Period size: 72 Copynumber: 3.9 Consensus size: 70
20421760 ACAAAACGAT
* * * * * * *
20421770 TTTCAG-TTTCAGCTAAAAAGATAAAGCTAAATAGAGTCAAATTTTAGTTAAAAATACATTAAGA
1 TTTCAGATTTCAGCT--AAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAGAAATAAAGA
*
20421834 TTTACAG
64 TTTTCAG
**
20421841 TTTCAGACTTTCAGCTCAAAGATAAAGCTAAATAGCGTCAAAATTTTGTGGAAAAA-AAATAAAG
1 TTTCAGA-TTTCAGCT-AAAGATAAAGCTAAATAGCGTCAAAATTGAGT-GAAAAAGAAATAAAG
20421905 ATTTTCAG
63 ATTTTCAG
* **
20421913 -TTCAGA--T-A---AAAGATAAA-CTAAATAGCATCAAAATTGAGTGAAAAAGACGTAAAGATT
1 TTTCAGATTTCAGCTAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAGAAATAAAGATT
20421970 TTCAG
66 TTCAG
** * * *
20421975 TTTCAG-TTAAAAGATAAAGATAAAGATAAATAACGTCAAAATTGAGTGGAAAAA-ATAATAAA
1 TTTCAGATT-TCAGCTAAAGATAAAGCTAAATAGCGTCAAAATTGAGT-GAAAAAGA-AATAAA
20422037 ATAAAAATGA
Statistics
Matches: 162, Mismatches: 19, Indels: 30
0.77 0.09 0.14
Matches are distributed among these distances:
61 6 0.04
62 33 0.20
63 14 0.09
66 1 0.01
67 1 0.01
68 1 0.01
69 9 0.06
70 20 0.12
71 22 0.14
72 42 0.26
73 13 0.08
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (70 bp):
TTTCAGATTTCAGCTAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAGAAATAAAGATT
TTCAG
Found at i:20423743 original size:91 final size:91
Alignment explanation
Indices: 20423627--20423914 Score: 344
Period size: 91 Copynumber: 3.2 Consensus size: 91
20423617 AGTAACTATT
* * *
20423627 CAATAACATGCCAGTTTG-TTCATAAGAGCTTTCCAACCAATAACATGCCAGATGCACATAGTGC
1 CAATAACACGCCAGATTGCTT-ATAAGAGCTTTCCAACCGATAACATGCCAGATGCACATAGTGC
*
20423691 AAAGCTTGTAGACTGAATATTCTCCCC
65 AAAGCTTGTAGGCTGAATATTCTCCCC
* * ** *
20423718 CAATAACACGCCAGATTGCTTATAAGAGCTTTCCAACCGATAGCATGCCATACACACGTAGTGCA
1 CAATAACACGCCAGATTGCTTATAAGAGCTTTCCAACCGATAACATGCCAGATGCACATAGTGCA
*** * *
20423783 AAGCCCATAGGTTGACTATTCTCCCC
66 AAGCTTGTAGGCTGAATATTCTCCCC
** * * * * * *
20423809 CAATAACACTTCATATTACTCATAAGAGCTTTCCAACCGATAACACGCTAGATGCACATAGTGTA
1 CAATAACACGCCAGATTGCTTATAAGAGCTTTCCAACCGATAACATGCCAGATGCACATAGTGCA
20423874 AAGCTTGTAGGCTGAATATTCTCCCC
66 AAGCTTGTAGGCTGAATATTCTCCCC
* *
20423900 CGATAACATGCCAGA
1 CAATAACACGCCAGA
20423915 ATCTCCGAAG
Statistics
Matches: 159, Mismatches: 37, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
91 157 0.99
92 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (91 bp):
CAATAACACGCCAGATTGCTTATAAGAGCTTTCCAACCGATAACATGCCAGATGCACATAGTGCA
AAGCTTGTAGGCTGAATATTCTCCCC
Found at i:20445703 original size:18 final size:19
Alignment explanation
Indices: 20445680--20445728 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
20445670 AATTGTGTCG
*
20445680 TTCATTTTCAAAAT-ATTA
1 TTCATTTTCAAAATCATAA
*
20445698 TTCATTTAC-AAATCATAA
1 TTCATTTTCAAAATCATAA
*
20445716 TTCAATTTCAAAA
1 TTCATTTTCAAAA
20445729 CATTTATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 4 0.16
18 18 0.72
19 3 0.12
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (19 bp):
TTCATTTTCAAAATCATAA
Found at i:20452865 original size:21 final size:22
Alignment explanation
Indices: 20452835--20452876 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
20452825 CACTTCACAA
*
20452835 TCATAAGTCATACATCATCATC
1 TCATAAGTCAAACATCATCATC
20452857 TCAT-AGTCAAACATCATCAT
1 TCATAAGTCAAACATCATCAT
20452877 AAAGTCCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (22 bp):
TCATAAGTCAAACATCATCATC
Found at i:20455046 original size:42 final size:42
Alignment explanation
Indices: 20454995--20455102 Score: 171
Period size: 42 Copynumber: 2.5 Consensus size: 42
20454985 ATGCTAATAG
*
20454995 CCAGTTATGGTCTTACACGAATCTCATATCAATGCCAATGTC
1 CCAGATATGGTCTTACACGAATCTCATATCAATGCCAATGTC
* *
20455037 CCAGATATGGTCTTACACAAATCTCATATCGATGCCAATGTC
1 CCAGATATGGTCTTACACGAATCTCATATCAATGCCAATGTC
*
20455079 CCAGACATGGTCTTACACGTAATC
1 CCAGATATGGTCTTACACG-AATC
20455103 ACATCTCAGT
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
42 56 0.93
43 4 0.07
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
CCAGATATGGTCTTACACGAATCTCATATCAATGCCAATGTC
Found at i:20484555 original size:89 final size:89
Alignment explanation
Indices: 20484404--20484582 Score: 349
Period size: 89 Copynumber: 2.0 Consensus size: 89
20484394 AAGAAAATAA
*
20484404 TAAATCTAGATGGTCATATAGTAAAGGCGAGTGCTCCAGAAGAGACCCAAAGACATAACTAATAA
1 TAAATCTAGATGGCCATATAGTAAAGGCGAGTGCTCCAGAAGAGACCCAAAGACATAACTAATAA
20484469 GTAAAACTCCAGAAGAGGTTCAGG
66 GTAAAACTCCAGAAGAGGTTCAGG
20484493 TAAATCTAGATGGCCATATAGTAAAGGCGAGTGCTCCAGAAGAGACCCAAAGACATAACTAATAA
1 TAAATCTAGATGGCCATATAGTAAAGGCGAGTGCTCCAGAAGAGACCCAAAGACATAACTAATAA
20484558 GTAAAACTCCAGAAGAGGTTCAGG
66 GTAAAACTCCAGAAGAGGTTCAGG
20484582 T
1 T
20484583 GCCTGAAACT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.19
Consensus pattern (89 bp):
TAAATCTAGATGGCCATATAGTAAAGGCGAGTGCTCCAGAAGAGACCCAAAGACATAACTAATAA
GTAAAACTCCAGAAGAGGTTCAGG
Found at i:20486137 original size:17 final size:18
Alignment explanation
Indices: 20486092--20486139 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
20486082 TGAATGATCA
* *
20486092 TTTTGAGTTTAAGTCACT
1 TTTTGAGTTTAAATTACT
20486110 TTTT-A-TTTAAATTA-T
1 TTTTGAGTTTAAATTACT
20486125 TTTTGAGTTTAAATT
1 TTTTGAGTTTAAATT
20486140 TGATAACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 5 0.19
16 8 0.31
17 9 0.35
18 4 0.15
ACGTcount: A:0.27, C:0.04, G:0.10, T:0.58
Consensus pattern (18 bp):
TTTTGAGTTTAAATTACT
Found at i:20486954 original size:20 final size:20
Alignment explanation
Indices: 20486920--20486961 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
20486910 AACTATTTAA
** *
20486920 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
20486940 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
20486960 AT
1 AT
20486962 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:20495011 original size:609 final size:609
Alignment explanation
Indices: 20493884--20495085 Score: 2219
Period size: 609 Copynumber: 2.0 Consensus size: 609
20493874 TTTAACCACA
20493884 AATTTAGGTAAGTAACTCAAAGCATAACATAATTCAATTTGGCCAAAGCCTATCACATAACCATT
1 AATTTAGGTAAGTAACTCAAAGCATAACATAATTCAATTTGGCCAAAGCCTATCACATAACCATT
*
20493949 AACCAAGTTAGCCATGTATTCATATAAAACTGAGAATCATGTATTGATTCAACAATTATTAAATT
66 AACCAAGTTAGCCATGTATTCATATAAAACTGAGAATCATGTATTGATTCAACAATTACTAAATT
*
20494014 CCATGTACATATACCATCTATATCGTATATCTATATATCATATATAAACCATTTTCATGTAAATA
131 CCATGTACATATACCATCTATACCGTATATCTATATATCATATATAAACCATTTTCATGTAAATA
*
20494079 CATGTACTAGTTCGTATTGAACTTGTGTAATCTCGTAATAACACTATGCCCGTTGAACCACTTAG
196 CATGTACTAATTCGTATTGAACTTGTGTAATCTCGTAATAACACTATGCCCGTTGAACCACTTAG
* *
20494144 AATATCGTTAGATACGCGAGTAGTACACGCGAGATGTACTAAACTATAAATTTGTCAATTCTTGT
261 AATACCATTAGATACGCGAGTAGTACACGCGAGATGTACTAAACTATAAATTTGTCAATTCTTGT
*
20494209 ACACGTATGCTCATACGAGCGATAAACGGTAGACTCCTCCGAGCTGTGAATTAGTAAGCTCTCAC
326 ACACGTATGCTCATACGAGCGATAAACGGTAGACTCCTCCGAGCTGTGAATCAGTAAGCTCTCAC
20494274 GAGCTGAAACCAGTAAGCTCATACGAGCTGTGGTGTGTCCGCAACACATGCAGGACCACAACCAA
391 GAGCTGAAACCAGTAAGCTCATACGAGCTGTGGTGTGTCCGCAACACATGCAGGACCACAACCAA
*
20494339 ATCGGTAACCCTAATGACATGTCATTTGTATCCTACGAATTCTTAAGGTTCAAACGGACTCTGTA
456 ATCGATAACCCTAATGACATGTCATTTGTATCCTACGAATTCTTAAGGTTCAAACGGACTCTGTA
20494404 TTCTTCATACTACCTCGATTATGCGTTCGATAATTATACATTGTGATTACACAATCCAAATACAT
521 TTCTTCATACTACCTCGATTATGCGTTCGATAATTATACATTGTGATTACACAATCCAAATACAT
20494469 ATATTTCAGAGCATAACATAATTC
586 ATATTTCAGAGCATAACATAATTC
*
20494493 AATTTAGGTAAGTAACTCAAAGCATAACATAATTCAATTTGGCCAAAGCCTATCACATAATCATT
1 AATTTAGGTAAGTAACTCAAAGCATAACATAATTCAATTTGGCCAAAGCCTATCACATAACCATT
*
20494558 AACCAAGTTAGCCATGTATTCATATAAAACTGAGAATCATGTA-TGAATTTAACAATTACTAAAT
66 AACCAAGTTAGCCATGTATTCATATAAAACTGAGAATCATGTATTG-ATTCAACAATTACTAAAT
*
20494622 TCCATGTACATATACCATCTATACCGTATATCTGTATATCATATATAAACCATTTTCATGTAAAT
130 TCCATGTACATATACCATCTATACCGTATATCTATATATCATATATAAACCATTTTCATGTAAAT
*
20494687 ACCTGTACTAATTCGTATTGAACTTGTGTAATCTCGTAATAA-ACTATGCCCGTTGAACCACTTA
195 ACATGTACTAATTCGTATTGAACTTGTGTAATCTCGTAATAACACTATGCCCGTTGAACCACTTA
* *
20494751 GAATACCATTAGATACGCGGGTAGTACACGCGAGATGTACTAAACTGTAAATTTGTCAATTCTTG
260 GAATACCATTAGATACGCGAGTAGTACACGCGAGATGTACTAAACTATAAATTTGTCAATTCTTG
* *
20494816 TACATGTATGCTCATACGAGCGATAAACGGTAGGCTCCTCCGAGCTGTGAATCAGTAAGCTCTCA
325 TACACGTATGCTCATACGAGCGATAAACGGTAGACTCCTCCGAGCTGTGAATCAGTAAGCTCTCA
*
20494881 CGAGTTGAAACCAGTAAGCTCATACGAGCTGTGGTGTGTCCGCAACACATGCAGGACCACAACCA
390 CGAGCTGAAACCAGTAAGCTCATACGAGCTGTGGTGTGTCCGCAACACATGCAGGACCACAACCA
20494946 AATCGATAACCCTAATGACATGTCATTTGTATCCTACGAATTCTTAAGGTTCAAACGGGACTCTG
455 AATCGATAACCCTAATGACATGTCATTTGTATCCTACGAATTCTTAAGGTTCAAAC-GGACTCTG
*
20495011 TATTCTTCATACTACCTCGATTATGCGTTCGATAATTATACATTGTGATTACACAATCCGAATAC
519 TATTCTTCATACTACCTCGATTATGCGTTCGATAATTATACATTGTGATTACACAATCCAAATAC
20495076 ATATATTTCA
584 ATATATTTCA
20495086 ATTAAAGTAT
Statistics
Matches: 574, Mismatches: 17, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
608 266 0.46
609 308 0.54
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (609 bp):
AATTTAGGTAAGTAACTCAAAGCATAACATAATTCAATTTGGCCAAAGCCTATCACATAACCATT
AACCAAGTTAGCCATGTATTCATATAAAACTGAGAATCATGTATTGATTCAACAATTACTAAATT
CCATGTACATATACCATCTATACCGTATATCTATATATCATATATAAACCATTTTCATGTAAATA
CATGTACTAATTCGTATTGAACTTGTGTAATCTCGTAATAACACTATGCCCGTTGAACCACTTAG
AATACCATTAGATACGCGAGTAGTACACGCGAGATGTACTAAACTATAAATTTGTCAATTCTTGT
ACACGTATGCTCATACGAGCGATAAACGGTAGACTCCTCCGAGCTGTGAATCAGTAAGCTCTCAC
GAGCTGAAACCAGTAAGCTCATACGAGCTGTGGTGTGTCCGCAACACATGCAGGACCACAACCAA
ATCGATAACCCTAATGACATGTCATTTGTATCCTACGAATTCTTAAGGTTCAAACGGACTCTGTA
TTCTTCATACTACCTCGATTATGCGTTCGATAATTATACATTGTGATTACACAATCCAAATACAT
ATATTTCAGAGCATAACATAATTC
Found at i:20499594 original size:62 final size:59
Alignment explanation
Indices: 20499486--20499602 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 59
20499476 ATCACTTTAA
* * *
20499486 TATTAAATTAATATAATATTTATCAAGATAAATATTAAATTTAATTTAATATTAAATCT
1 TATTAAAATAATATAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
*
20499545 TATTAAAATAATATAATGTTTATCTACAAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATATAATATTTA--T-CAAGATAAACATTAAATTAAATTTAATATTAA
20499603 GATAATCACT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 20 0.39
61 1 0.02
62 30 0.59
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (59 bp):
TATTAAAATAATATAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:20499628 original size:20 final size:18
Alignment explanation
Indices: 20499581--20499687 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
20499571 CAAGATAAAC
20499581 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
20499598 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
**
20499618 ATTAAATTAATAAAATAAT
1 ATTAAATTAAT-ATTTAAT
*
20499637 ATTTAGA-TAAGTA-TTAA-
1 A-TTAAATTAA-TATTTAAT
*
20499654 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
20499674 ATTAAAATAATATT
1 ATTAAATTAATATT
20499688 AATTTTGAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
16 4 0.06
17 11 0.16
18 10 0.14
19 18 0.26
20 27 0.39
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:20508649 original size:24 final size:25
Alignment explanation
Indices: 20508604--20508664 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 25
20508594 TCCGCCCATA
*
20508604 TTAT-TTTTA-ATTTTTTTAAATAT
1 TTATATTTTATATTATTTTAAATAT
20508627 TTATATTTTATATTATTTT-AATAT
1 TTATATTTTATATTATTTTAAATAT
20508651 TTAATAATTTTATA
1 TT-AT-ATTTTATA
20508665 CATTTTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
23 4 0.12
24 12 0.36
25 9 0.27
26 8 0.24
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (25 bp):
TTATATTTTATATTATTTTAAATAT
Found at i:20508669 original size:25 final size:25
Alignment explanation
Indices: 20508617--20508670 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
20508607 TTTTTAATTT
*
20508617 TTTTAAATATTTATATTTTATATTA
1 TTTTAAATATTTATATTTTATATCA
20508642 TTTT-AATATTTAATAATTTTATA-CA
1 TTTTAAATATTT-AT-ATTTTATATCA
20508667 TTTT
1 TTTT
20508671 TATTTATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 7 0.27
25 11 0.42
26 8 0.31
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTTAAATATTTATATTTTATATCA
Found at i:20508671 original size:26 final size:23
Alignment explanation
Indices: 20508616--20508672 Score: 60
Period size: 26 Copynumber: 2.3 Consensus size: 23
20508606 ATTTTTAATT
*
20508616 TTTTTAAATATTTATATTTTATAT
1 TTTTT-AATATTTATATTTTATAA
20508640 TATTTTAATATTTAATAATTTTATACA
1 T-TTTTAATATTT-AT-ATTTTATA-A
20508667 TTTTTA
1 TTTTTA
20508673 TTTATTGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 8 0.29
25 6 0.21
26 13 0.46
27 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTTTAATATTTATATTTTATAA
Found at i:20514993 original size:26 final size:26
Alignment explanation
Indices: 20514957--20515016 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
20514947 TTTTATCCCT
* *
20514957 ATTTTACCCCCAATGAAATTTTGACG
1 ATTTTACCCCCAATAAAATTTTAACG
* *
20514983 ATTTTATCCCCGATAAAATTTTAACG
1 ATTTTACCCCCAATAAAATTTTAACG
20515009 ATTTTACC
1 ATTTTACC
20515017 ATTGGTAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (26 bp):
ATTTTACCCCCAATAAAATTTTAACG
Found at i:20518598 original size:34 final size:32
Alignment explanation
Indices: 20518553--20518620 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
20518543 GGAAACACCC
20518553 AAAAATCGAATATAGTTAAGTCACCAAAAAAGAA
1 AAAAATCG-A-ATAGTTAAGTCACCAAAAAAGAA
* * *
20518587 AAAAATTGAATAGTTGAGTGACCAAAAAAGAA
1 AAAAATCGAATAGTTAAGTCACCAAAAAAGAA
20518619 AA
1 AA
20518621 TTACTAATAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 23 0.74
33 1 0.03
34 7 0.23
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (32 bp):
AAAAATCGAATAGTTAAGTCACCAAAAAAGAA
Found at i:20518630 original size:31 final size:32
Alignment explanation
Indices: 20518564--20518638 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 32
20518554 AAAATCGAAT
* * *
20518564 ATAGTTAAGTCACCAAAAAAGAAAAAAATTGA
1 ATAGTTGAGTGACCAAAAAAGAAAAAAACTGA
**
20518596 ATAGTTGAGTGACCAAAAAAGAAAATTACT-A
1 ATAGTTGAGTGACCAAAAAAGAAAAAAACTGA
*
20518627 ATAGTTGGGTGA
1 ATAGTTGAGTGA
20518639 TTACTAATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 12 0.32
32 25 0.68
ACGTcount: A:0.51, C:0.08, G:0.19, T:0.23
Consensus pattern (32 bp):
ATAGTTGAGTGACCAAAAAAGAAAAAAACTGA
Found at i:20523243 original size:2 final size:2
Alignment explanation
Indices: 20523236--20523262 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
20523226 AAAGAAAGTG
20523236 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
20523263 GGGACTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20532724 original size:14 final size:14
Alignment explanation
Indices: 20532705--20532738 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
20532695 TCCCTAAAAG
20532705 AAATTTCAGCTTCA
1 AAATTTCAGCTTCA
*
20532719 AAATTTCGGCTTCA
1 AAATTTCAGCTTCA
20532733 AAATTT
1 AAATTT
20532739 TACCTGATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (14 bp):
AAATTTCAGCTTCA
Found at i:20533698 original size:22 final size:21
Alignment explanation
Indices: 20533637--20533698 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 21
20533627 TGTTTTGAGG
*
20533637 TAAAAA-AATATTTAGAATAAT
1 TAAAAATATTATTTA-AATAAT
20533658 TAAAAATATTATTTAAAT--T
1 TAAAAATATTATTTAAATAAT
*
20533677 CT-ATAATATTATTTAAATAAT
1 -TAAAAATATTATTTAAATAAT
20533698 T
1 T
20533699 TGAAAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 16 0.46
20 2 0.06
21 10 0.29
22 7 0.20
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
TAAAAATATTATTTAAATAAT
Found at i:20533709 original size:22 final size:21
Alignment explanation
Indices: 20533637--20533710 Score: 64
Period size: 22 Copynumber: 3.5 Consensus size: 21
20533627 TGTTTTGAGG
*
20533637 TAAAAAAATATTTAGAATAA-T
1 TAAAAAATTATTTA-AATAATT
*
20533658 TAAAAATATTATTTAAAT--TC
1 TAAAAA-ATTATTTAAATAATT
* *
20533678 TATAATATTATTTAAATAATT
1 TAAAAAATTATTTAAATAATT
20533699 TGAAAAAATTAT
1 T-AAAAAATTAT
20533711 CCAAATTTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
19 11 0.27
20 4 0.10
21 11 0.27
22 15 0.37
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (21 bp):
TAAAAAATTATTTAAATAATT
Found at i:20538361 original size:17 final size:18
Alignment explanation
Indices: 20538329--20538363 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
20538319 GGAATTTGGG
*
20538329 GAGTTTTGTCTTTTTATT
1 GAGTTTTCTCTTTTTATT
20538347 GAGTTTTCT-TTTTTATT
1 GAGTTTTCTCTTTTTATT
20538364 ATCCTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.06, G:0.14, T:0.69
Consensus pattern (18 bp):
GAGTTTTCTCTTTTTATT
Found at i:20542547 original size:74 final size:74
Alignment explanation
Indices: 20542414--20542569 Score: 170
Period size: 74 Copynumber: 2.1 Consensus size: 74
20542404 ATTTTTATGT
* * * * * * *
20542414 TAAAATGGTAAGTAATTGTGACAAAATTAAATTGTTACACGTATTTCATTTCCTAGTGACCAAGT
1 TAAAATGATAAGGAACTGTGACAAAATTAAATAGTCACACGTATTTCATTTCCTAGTGACAAAAT
20542479 TTCCGACAC
66 TTCCGACAC
** ** *
20542488 TAAAATGATAAGGAACTGTGACAAAATTAAATAGTCACATTTATTT-AGTTTTTTGGTGACAAAA
1 TAAAATGATAAGGAACTGTGACAAAATTAAATAGTCACACGTATTTCA-TTTCCTAGTGACAAAA
**
20542552 TTTTTGACAC
65 TTTCCGACAC
20542562 TAAAATGA
1 TAAAATGA
20542570 CAGACAATTG
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
73 1 0.01
74 66 0.99
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (74 bp):
TAAAATGATAAGGAACTGTGACAAAATTAAATAGTCACACGTATTTCATTTCCTAGTGACAAAAT
TTCCGACAC
Found at i:20542582 original size:74 final size:70
Alignment explanation
Indices: 20542490--20542672 Score: 165
Period size: 74 Copynumber: 2.5 Consensus size: 70
20542480 TCCGACACTA
* * * *
20542490 AAATGATAAGGAACTGTGACAAAATTAAATAGTCACATTTA-TTTAGTTTTTTGGTGACAAAATT
1 AAATG-TAAGCAATTGTGACAAAATTAAATAGTCACAATTATTTTA-TTTTTT-GTGACAAAACT
20542554 TTTGACACT
63 TTTGACA-T
* * * *
20542563 AAAATG-ACAGACAATTGTGATAAGATTTAAAT-GATCATAATTATTTTATTTTTTGTGATAAAA
1 -AAATGTA-AG-CAATTGTGACAA-AATTAAATAG-TCACAATTATTTTATTTTTTGTGACAAAA
20542626 CTTTTGACAT
61 CTTTTGACAT
* * *
20542636 TATTGTAAGTAATTGTGACAAAATTAAATAGTCACAA
1 AAATGTAAGCAATTGTGACAAAATTAAATAGTCACAA
20542673 GTAACCTTTT
Statistics
Matches: 88, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
70 12 0.14
71 11 0.12
72 6 0.07
73 4 0.05
74 31 0.35
75 20 0.23
76 4 0.05
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (70 bp):
AAATGTAAGCAATTGTGACAAAATTAAATAGTCACAATTATTTTATTTTTTGTGACAAAACTTTT
GACAT
Found at i:20546481 original size:949 final size:940
Alignment explanation
Indices: 20545048--20546951 Score: 2575
Period size: 951 Copynumber: 2.0 Consensus size: 940
20545038 CTAGATGACG
* * * * *
20545048 GATACATTGTTTCATTTTGGGTCTTGTTGGGTTTTTGAGCCTTCTTGTGAAGAGGAGATCCGAAG
1 GATACATTCTTTTATTTTGAGTCTTGTTGGGTTTTTGAACCTTCTTGTGAAGAGGAGATCCAAAG
* *
20545113 GGTGTGAACGTCAAGTACAGGGTCAATTCCTATTCGATTGGGTTCGTTAGGGTTTACTTTGTCTA
66 GGTGTGAACGTCAAGTACAGGGTCAATACCTATTCGATTGGGTTCGTTAGGGATTACTTTGTCTA
* * *
20545178 CGTAGGGCCAAACACTTTATAGACATAGGCATCGATTTGTTTGATAGGCTACAGTTCGGTTGGAA
131 CGTAGGGCCAAACACTTCATAGACATAGGCATAGATTTGTTTGATAGGCTACAGTTCAGTTGGAA
* * *
20545243 CGATTGTATCCTTCGATGACATCTTGGCCAAGATAATCAAGGTCAAATTGACTCTCAATATGGAA
196 CGATTGTATCCTCCGATGACATCTTGGCCAAGATAATCAAGGTAAAATTAACTCTCAATATGGAA
* * * * *
20545308 GGTGATAAAGATGAATTGTTCTAGGGCCAACGAGCATGGGTGAATTGGTTATACTATGTTGATCG
261 GGTAATAAAGAGGAATTGTTCTAGGGCCAACGAGCATGGGTGAATTGGCTATACTATGGTGATCA
*
20545373 AAATACATCGTTTTACCACAAATTTGCCACTTTTCAGAAGCATATGAATTTAGTAACTTCTTTGG
326 AAATACATCATTTTACCACAAATTTGCCACTTTTCAGAAGCATATGAATTTAGTAACTTCTTTGG
* * * *
20545438 TGGATGATGATGGTCGTATTTGTACAGACATGGATGCTATGTTTGGGGTTGCCGCTAGATATTTT
391 TGGATAATGATGGTCGTACTTGTACAGACATGGATGCTATGTTTGGGGTTCCCACTAGATATTTT
* * * *
20545503 CAGGGCGTTTTTACTTCGTCTAGGCCGGTGAATTTTCAT-TTT-TTAGAGGACATTTAGGTGTGT
456 CAGGGCCTTTTTACTTCGTCTAGGCCGGTGAATTTTCATATTTGTTAGACGACATTGAGGTGCGT
*
20545566 ATTACTCATTAGAA-AATGAGGGTTTTTCTATCCGATTTTACACCTCTAGAGATTAGGTCTACCA
521 ATTACT-ATTAGAAGAATG-GGGTTTTGCTATCCGATTTTACACCTCTAGAGATTAGGTCTACCA
* * * *
20545630 TTGACGGGATGTCTCCTTTGAAATCCCCGGGTAGGGATGGATTGCCAGATTTGTTTTTTCAGTAG
584 TTGACGGGATGTCTCCTTTGAAATCCCCAGATAGGGATGGATTCCCAGATTTGTTTTTTCAGAAG
* * * *
20545695 TATTGGCATACCATTGATGCTGATGTCACAAATTATTATTTGCAGGTGCTTTGAAGGGAGCTCCT
649 TATAGGCATACCATTGACGCTGATGTCACAAATTATTATTTGCAGGTGCTTCGAAGGGAGCTCCC
* * **
20545760 TTTTTTTATATTAATGCCACAAACCTCATTCTTCTTCCCAAGGTGCATAATCCTGTGAAAATGTC
714 TTTTTTGATATTAATGCCACAAACCTCATTCTTCTTCCCAAGGTGCATAACCCTACGAAAATGTC
20545825 ACAATTCCACCTGATTAGTCTCTGTT-CTATTCTTTACAAGATTATTTCTACAGTTTCGGGGAAC
779 ACAATTCCACCTGATTAGTCTCTGTTCCT-TTCTTTACAAGATTATTTCTACAGTTTCGGGGAAC
* * * * * *
20545889 ATGTTTAAAGGGGTTTTGTCCACTTGTATTGA-AGAGGCACAGAGTGCGTTTTTTCCTGACTGTT
843 AGGTTTAAAAGAGTTTTGTCCACTTGTATTGACA-AGGCACAGAGTGCATTTGTTCCTGACCGTT
*
20545953 TTATCACTAACAACTTCCTAATTGCTTATGAGGT
907 TTATCACTAACAACTTCCTAAATGCTTATGAGGT
*
20545987 GATACATTCTTTTGTTTTGAGTCTTGTTGGGTTTTCT-AACCTTCTTGTGAAGAGGAGATCCAAA
1 GATACATTCTTTTATTTTGAGTCTTGTTGGGTTTT-TGAACCTTCTTGTGAAGAGGAGATCCAAA
** * *** * * *
20546051 GGGTGTGGGCTTCAAGTACAGGGTTGGTACCTATTTGATTGGGTTTGTTAGGGATTATTTTGTCT
65 GGGTGTGAACGTCAAGTACAGGGTCAATACCTATTCGATTGGGTTCGTTAGGGATTACTTTGTCT
* * * *
20546116 ACTTGGGGCCAAACACTTCATAGATATAGGCGTTAG-TTTGTTTGATAGGCTACAGCTT-AGTTG
130 ACGTAGGGCCAAACACTTCATAGACATAGGC-ATAGATTTGTTTGATAGGCTACAG-TTCAGTTG
* *
20546179 GAACGATTGCATCAGGTTGATCCCTCCGGTGACATCTTGGCCGAGATAATCAAGGTAAAATTAAC
193 GAACGA-T---T---G-T-AT-CCTCCGATGACATCTTGGCCAAGATAATCAAGGTAAAATTAAC
* * * * * *
20546244 TCTCAATATGGAGGGTAATAGAA-AGGAATTGTTTTGGGGCCAACGGGCATGTGTGAATTGGCTG
248 TCTCAATATGGAAGGTAATA-AAGAGGAATTGTTCTAGGGCCAACGAGCATGGGTGAATTGGCTA
*
20546308 TACTATGGTGATCAAAATACATCATTTTACCACAAATTTGCCACTTTTCGGAAGCATATGAATTT
312 TACTATGGTGATCAAAATACATCATTTTACCACAAATTTGCCACTTTTCAGAAGCATATGAATTT
* * * *
20546373 GGTAAGTTCTTTGGTGGATAATGATGGTCGTACTTGTATAGACATGGATGTTATGTTTGGGGTTC
377 AGTAACTTCTTTGGTGGATAATGATGGTCGTACTTGTACAGACATGGATGCTATGTTTGGGGTTC
* * * *
20546438 CCACTAGATATTTTCAGGGCCTTTTTACTTTGTTTAGGCCGGTGAATTTTGATAATTTGTTTGAC
442 CCACTAGATATTTTCAGGGCCTTTTTACTTCGTCTAGGCCGGTGAATTTTCAT-ATTTGTTAGAC
* * * * *
20546503 GACATTGATGTGCGTATTACTATTCGAAGAATGGGGTTTTGCTCTCTGATTTTACATCTCTAGAG
506 GACATTGAGGTGCGTATTACTATTAGAAGAATGGGGTTTTGCTATCCGATTTTACACCTCTAGAG
* ** * * *
20546568 ATTAGGTTTGTCATTGATGGGATGTCTCCTTTGAAATCCCCAGATAGGGATGGATTCCCGGCTTT
571 ATTAGGTCTACCATTGACGGGATGTCTCCTTTGAAATCCCCAGATAGGGATGGATTCCCAGATTT
* * * * * *
20546633 GTTTTTTTAGAAGTATAGGTATATCATTGACGCTGATGTCACAGATTATTCTTTGCAGGTGGTTC
636 GTTTTTTCAGAAGTATAGGCATACCATTGACGCTGATGTCACAAATTATTATTTGCAGGTGCTTC
* *
20546698 GAAGGGAGCTCCCTTTTTTGATATTAATGCCACAAACTTCATTCTTTTTCCCAAGGTGCATAACC
701 GAAGGGAGCTCCCTTTTTTGATATTAATGCCACAAACCTCATTCTTCTTCCCAAGGTGCATAACC
* * * * *
20546763 CTACGTAGATGTCACAATTCCGCCTGATTAGTCTTTGTTCCTTTCTTTACAAGATTATTTCTATA
766 CTACGAAAATGTCACAATTCCACCTGATTAGTCTCTGTTCCTTTCTTTACAAGATTATTTCTACA
* ***
20546828 GTTTCGGGGAAGAGGTTTAAAAGAGTTTTGTCTGTTTGTATTGACAAGGCACAGAGTGCATTTGT
831 GTTTCGGGGAACAGGTTTAAAAGAGTTTTGTCCACTTGTATTGACAAGGCACAGAGTGCATTTGT
* * * *
20546893 TCCTGGCCGTTTTATCACTAATAACTTTCTAAATGCTTATGATGT
896 TCCTGACCGTTTTATCACTAACAACTTCCTAAATGCTTATGAGGT
*
20546938 GTTACATTCTTTTA
1 GATACATTCTTTTA
20546952 AACACAAGCG
Statistics
Matches: 833, Mismatches: 112, Indels: 28
0.86 0.12 0.03
Matches are distributed among these distances:
939 166 0.20
940 6 0.01
943 1 0.00
946 1 0.00
947 1 0.00
948 2 0.00
949 257 0.31
950 2 0.00
951 368 0.44
952 29 0.03
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (940 bp):
GATACATTCTTTTATTTTGAGTCTTGTTGGGTTTTTGAACCTTCTTGTGAAGAGGAGATCCAAAG
GGTGTGAACGTCAAGTACAGGGTCAATACCTATTCGATTGGGTTCGTTAGGGATTACTTTGTCTA
CGTAGGGCCAAACACTTCATAGACATAGGCATAGATTTGTTTGATAGGCTACAGTTCAGTTGGAA
CGATTGTATCCTCCGATGACATCTTGGCCAAGATAATCAAGGTAAAATTAACTCTCAATATGGAA
GGTAATAAAGAGGAATTGTTCTAGGGCCAACGAGCATGGGTGAATTGGCTATACTATGGTGATCA
AAATACATCATTTTACCACAAATTTGCCACTTTTCAGAAGCATATGAATTTAGTAACTTCTTTGG
TGGATAATGATGGTCGTACTTGTACAGACATGGATGCTATGTTTGGGGTTCCCACTAGATATTTT
CAGGGCCTTTTTACTTCGTCTAGGCCGGTGAATTTTCATATTTGTTAGACGACATTGAGGTGCGT
ATTACTATTAGAAGAATGGGGTTTTGCTATCCGATTTTACACCTCTAGAGATTAGGTCTACCATT
GACGGGATGTCTCCTTTGAAATCCCCAGATAGGGATGGATTCCCAGATTTGTTTTTTCAGAAGTA
TAGGCATACCATTGACGCTGATGTCACAAATTATTATTTGCAGGTGCTTCGAAGGGAGCTCCCTT
TTTTGATATTAATGCCACAAACCTCATTCTTCTTCCCAAGGTGCATAACCCTACGAAAATGTCAC
AATTCCACCTGATTAGTCTCTGTTCCTTTCTTTACAAGATTATTTCTACAGTTTCGGGGAACAGG
TTTAAAAGAGTTTTGTCCACTTGTATTGACAAGGCACAGAGTGCATTTGTTCCTGACCGTTTTAT
CACTAACAACTTCCTAAATGCTTATGAGGT
Found at i:20549779 original size:20 final size:20
Alignment explanation
Indices: 20549730--20549779 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
20549720 TAAACCACTT
*
20549730 CATTTACATACTTACCATTC
1 CATTTACTTACTTACCATTC
*
20549750 CATTTACTTACTTTCCATTC
1 CATTTACTTACTTACCATTC
* *
20549770 TATTTGCTTA
1 CATTTACTTA
20549780 GCATAAGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.02, T:0.48
Consensus pattern (20 bp):
CATTTACTTACTTACCATTC
Found at i:20553139 original size:18 final size:18
Alignment explanation
Indices: 20553105--20553139 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
20553095 TTTGGGTTTC
*
20553105 TTTTTCTTTTGTCTTTTG
1 TTTTTCTTTGGTCTTTTG
*
20553123 TTTTTCTTTGGTGTTTT
1 TTTTTCTTTGGTCTTTT
20553140 TCTGATTCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.09, G:0.14, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTGGTCTTTTG
Found at i:20559897 original size:20 final size:20
Alignment explanation
Indices: 20559848--20559897 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
20559838 TAAACCACTT
*
20559848 CATTTACATACTTACCATTC
1 CATTTACTTACTTACCATTC
*
20559868 CATTTACTTACTTTCCATTC
1 CATTTACTTACTTACCATTC
* *
20559888 TATTTGCTTA
1 CATTTACTTA
20559898 GCATAAGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.02, T:0.48
Consensus pattern (20 bp):
CATTTACTTACTTACCATTC
Found at i:20563257 original size:18 final size:18
Alignment explanation
Indices: 20563223--20563257 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
20563213 TTTGGGTTTC
*
20563223 TTTTTCTTTTGTCTTTTG
1 TTTTTCTTTGGTCTTTTG
*
20563241 TTTTTCTTTGGTGTTTT
1 TTTTTCTTTGGTCTTTT
20563258 TCTGATTCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.09, G:0.14, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTGGTCTTTTG
Found at i:20571589 original size:311 final size:311
Alignment explanation
Indices: 20571156--20571779 Score: 1239
Period size: 311 Copynumber: 2.0 Consensus size: 311
20571146 TAAATAATAT
*
20571156 TTATTTGATTCATGCTTATAATGTTTGTGCCTCAATCGATTATGTTTTCAATTAAAATCAAGTTT
1 TTATTTGATCCATGCTTATAATGTTTGTGCCTCAATCGATTATGTTTTCAATTAAAATCAAGTTT
20571221 GTATTTCGTTTATACGTGATTGAAATGCACTTGAATTAGCTGAGCGATCCTGACCAGATGACAGC
66 GTATTTCGTTTATACGTGATTGAAATGCACTTGAATTAGCTGAGCGATCCTGACCAGATGACAGC
20571286 TAATAGACACATAATTGAAATGTGCATGCTCAATTTAGATCCTGACTTGATTAAATTGGAGGTTG
131 TAATAGACACATAATTGAAATGTGCATGCTCAATTTAGATCCTGACTTGATTAAATTGGAGGTTG
20571351 CATAACAACTCTGACCAACCTCTGACCCGATTAAATTGTTTCAAACCTGACACGTCCCTGTTACC
196 CATAACAACTCTGACCAACCTCTGACCCGATTAAATTGTTTCAAACCTGACACGTCCCTGTTACC
20571416 TCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCAGTAAAATGCGTA
261 TCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCAGTAAAATGCGTA
20571467 TTATTTGATCCATGCTTATAATGTTTGTGCCTCAATCGATTATGTTTTCAATTAAAATCAAGTTT
1 TTATTTGATCCATGCTTATAATGTTTGTGCCTCAATCGATTATGTTTTCAATTAAAATCAAGTTT
20571532 GTATTTCGTTTATACGTGATTGAAATGCACTTGAATTAGCTGAGCGATCCTGACCAGATGACAGC
66 GTATTTCGTTTATACGTGATTGAAATGCACTTGAATTAGCTGAGCGATCCTGACCAGATGACAGC
20571597 TAATAGACACATAATTGAAATGTGCATGCTCAATTTAGATCCTGACTTGATTAAATTGGAGGTTG
131 TAATAGACACATAATTGAAATGTGCATGCTCAATTTAGATCCTGACTTGATTAAATTGGAGGTTG
20571662 CATAACAACTCTGACCAACCTCTGACCCGATTAAATTGTTTCAAACCTGACACGTCCCTGTTACC
196 CATAACAACTCTGACCAACCTCTGACCCGATTAAATTGTTTCAAACCTGACACGTCCCTGTTACC
20571727 TCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCAGTAAAATGCGTA
261 TCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCAGTAAAATGCGTA
20571778 TT
1 TT
20571780 TACTAATTAA
Statistics
Matches: 312, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
311 312 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (311 bp):
TTATTTGATCCATGCTTATAATGTTTGTGCCTCAATCGATTATGTTTTCAATTAAAATCAAGTTT
GTATTTCGTTTATACGTGATTGAAATGCACTTGAATTAGCTGAGCGATCCTGACCAGATGACAGC
TAATAGACACATAATTGAAATGTGCATGCTCAATTTAGATCCTGACTTGATTAAATTGGAGGTTG
CATAACAACTCTGACCAACCTCTGACCCGATTAAATTGTTTCAAACCTGACACGTCCCTGTTACC
TCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCAGTAAAATGCGTA
Found at i:20587763 original size:20 final size:20
Alignment explanation
Indices: 20587707--20587764 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 20
20587697 ATTTCTTCAA
*
20587707 AATTTTAGAAAATT-TA-TT
1 AATTTTAGAATATTATATTT
* *
20587725 GATCTTTTGAATA-TATATTT
1 AAT-TTTAGAATATTATATTT
20587745 AATTTTAGAATATTATATTT
1 AATTTTAGAATATTATATTT
20587765 TTATTTTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 3 0.10
19 17 0.55
20 11 0.35
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (20 bp):
AATTTTAGAATATTATATTT
Found at i:20587804 original size:20 final size:20
Alignment explanation
Indices: 20587781--20587818 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
20587771 TTATTTTTTT
20587781 AATT-TATTGATGCTTTTTAG
1 AATTATATTGAT-CTTTTTAG
*
20587801 AATTATATTTATCTTTTT
1 AATTATATTGATCTTTTT
20587819 TTTTTCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (20 bp):
AATTATATTGATCTTTTTAG
Found at i:20588016 original size:25 final size:22
Alignment explanation
Indices: 20587985--20588028 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
20587975 ATAGTTAACA
*
20587985 TCATCATCAATTGTCATTATTT
1 TCATCATCATTTGTCATTATTT
20588007 TCATCATCATTTGTCATTATTT
1 TCATCATCATTTGTCATTATTT
20588029 ACTCGCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.18, G:0.05, T:0.52
Consensus pattern (22 bp):
TCATCATCATTTGTCATTATTT
Found at i:20594010 original size:19 final size:19
Alignment explanation
Indices: 20593986--20594025 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
20593976 CTTAGTGAGT
20593986 TACATAAAGAAAACATAAC
1 TACATAAAGAAAACATAAC
20594005 TACATAAAGAAAACATAAC
1 TACATAAAGAAAACATAAC
20594024 TA
1 TA
20594026 ACTTACAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.62, C:0.15, G:0.05, T:0.17
Consensus pattern (19 bp):
TACATAAAGAAAACATAAC
Found at i:20596397 original size:43 final size:43
Alignment explanation
Indices: 20596333--20596443 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
20596323 ATGTTCCAAT
*
20596333 ATCGATTTGAGATTTCATGTAAGACCATAGCTGGGCTATTGGC
1 ATCGATTTGAGATTTCATGTAAGAACATAGCTGGGCTATTGGC
* **
20596376 ATCGATTTGAGATTT-AGTGTAAGAACATAGCTGGGGTATTCAC
1 ATCGATTTGAGATTTCA-TGTAAGAACATAGCTGGGCTATTGGC
* **
20596419 ATCAATACGAGATTTCCATGTAAGA
1 ATCGATTTGAGATTT-CATGTAAGA
20596444 CCATGTTTGG
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.02
43 49 0.84
44 7 0.12
45 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (43 bp):
ATCGATTTGAGATTTCATGTAAGAACATAGCTGGGCTATTGGC
Found at i:20599430 original size:22 final size:22
Alignment explanation
Indices: 20599405--20599446 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
20599395 CAAAATTTGG
20599405 AATACATAA-ATAATAAAATAAT
1 AATACATAATA-AATAAAATAAT
*
20599427 AATACCTAATAAATAAAATA
1 AATACATAATAAATAAAATA
20599447 TTGGACCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (22 bp):
AATACATAATAAATAAAATAAT
Found at i:20605019 original size:13 final size:14
Alignment explanation
Indices: 20604991--20605031 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
20604981 ACCTAAGTCC
*
20604991 ATAACAG-TAACAG
1 ATAACAGATATCAG
*
20605004 ATACCAGA-ATCAG
1 ATAACAGATATCAG
20605017 ATAACAGATATCAG
1 ATAACAGATATCAG
20605031 A
1 A
20605032 ATCCTACCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (14 bp):
ATAACAGATATCAG
Found at i:20609833 original size:20 final size:20
Alignment explanation
Indices: 20609810--20609860 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
20609800 TTGTTATTCC
20609810 TAGAAAATAAAATTTATACT
1 TAGAAAATAAAATTTATACT
*
20609830 TAGAAAATAGAATTTATACT
1 TAGAAAATAAAATTTATACT
20609850 TAGAAAATAAA
1 TAGAAAATAAA
20609861 TTCTCTCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (20 bp):
TAGAAAATAAAATTTATACT
Found at i:20610253 original size:21 final size:22
Alignment explanation
Indices: 20610218--20610269 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
20610208 AATATTATTG
*
20610218 ATTAATTAATTTAATTAGATAA
1 ATTAATTAATTTAATTAAATAA
*
20610240 ATTAATT-TTTTAATTAAATAA
1 ATTAATTAATTTAATTAAATAA
* *
20610261 TTTTATTAA
1 ATTAATTAA
20610270 CCCAATTCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTAATTAATTTAATTAAATAA
Found at i:20612052 original size:724 final size:724
Alignment explanation
Indices: 20610666--20612115 Score: 2900
Period size: 724 Copynumber: 2.0 Consensus size: 724
20610656 CACGAAGTCA
20610666 TTCCACTATAGTATCATGACTGAGCTCTCCCTAATTACAAATCATTACGAAAGTTACTTACTCAA
1 TTCCACTATAGTATCATGACTGAGCTCTCCCTAATTACAAATCATTACGAAAGTTACTTACTCAA
20610731 TGTTTATCCAATGACCTTGTCATTAGTGTGTTACCCTCATAGGATATCCTTAATATCTTTGAGAT
66 TGTTTATCCAATGACCTTGTCATTAGTGTGTTACCCTCATAGGATATCCTTAATATCTTTGAGAT
20610796 AATTTTTTTTCTCCTAATATGATCCTATTTTATCTTATAATAACAATTACATCTTCCTTCATGAA
131 AATTTTTTTTCTCCTAATATGATCCTATTTTATCTTATAATAACAATTACATCTTCCTTCATGAA
20610861 AAGTCAATTACTATCAAATAGTAACCAAGTCATTTATCATAAAAACAAAGGACTCGTGATCATGT
196 AAGTCAATTACTATCAAATAGTAACCAAGTCATTTATCATAAAAACAAAGGACTCGTGATCATGT
20610926 TTACTTTTCACCTATCATGTTATTTCAATGAGAGGATATCATTTACCTATTGATTAGGCTATGAA
261 TTACTTTTCACCTATCATGTTATTTCAATGAGAGGATATCATTTACCTATTGATTAGGCTATGAA
20610991 TTTCACTATTGTGAATGATGCTACATACTGCAACAGTTGTATATCCAACGCACCAACTTTCGATT
326 TTTCACTATTGTGAATGATGCTACATACTGCAACAGTTGTATATCCAACGCACCAACTTTCGATT
20611056 CCTTATCTATTTGAACTCAGGCTTTTACTTACATCAAATTATAGGAGTCACGTATACATACTCCG
391 CCTTATCTATTTGAACTCAGGCTTTTACTTACATCAAATTATAGGAGTCACGTATACATACTCCG
20611121 TCATCCACTCAGGATTAAGGTATGTCACACTATGAATGTTACAAGTGAATAAATTCATAAACGGA
456 TCATCCACTCAGGATTAAGGTATGTCACACTATGAATGTTACAAGTGAATAAATTCATAAACGGA
20611186 TCTAGGATCTATTCTACTTGGGTCTTGTCCGATGTATTGTCAGTCCAGTCAGTCATATCTATGTC
521 TCTAGGATCTATTCTACTTGGGTCTTGTCCGATGTATTGTCAGTCCAGTCAGTCATATCTATGTC
20611251 TCTATCTTTTGGGAGTCATTTGCTCTGATACTCAAGACAAAGCATCTTCCCAATTAGACTTTGTC
586 TCTATCTTTTGGGAGTCATTTGCTCTGATACTCAAGACAAAGCATCTTCCCAATTAGACTTTGTC
20611316 GAAACCATTTTTTTTGAAAAAGAAAAAAAACGGGGGTCGACTTTAAAAATGAAAATGGGAGTCGC
651 GAAACCATTTTTTTTGAAAAAGAAAAAAAACGGGGGTCGACTTTAAAAATGAAAATGGGAGTCGC
20611381 CACCGATCT
716 CACCGATCT
20611390 TTCCACTATAGTATCATGACTGAGCTCTCCCTAATTACAAATCATTACGAAAGTTACTTACTCAA
1 TTCCACTATAGTATCATGACTGAGCTCTCCCTAATTACAAATCATTACGAAAGTTACTTACTCAA
20611455 TGTTTATCCAATGACCTTGTCATTAGTGTGTTACCCTCATAGGATATCCTTAATATCTTTGAGAT
66 TGTTTATCCAATGACCTTGTCATTAGTGTGTTACCCTCATAGGATATCCTTAATATCTTTGAGAT
20611520 AATTTTTTTTCTCCTAATATGATCCTATTTTATCTTATAATAACAATTACATCTTCCTTCATGAA
131 AATTTTTTTTCTCCTAATATGATCCTATTTTATCTTATAATAACAATTACATCTTCCTTCATGAA
20611585 AAGTCAATTACTATCAAATAGTAACCAAGTCATTTATCATAAAAACAAAGGACTCGTGATCATGT
196 AAGTCAATTACTATCAAATAGTAACCAAGTCATTTATCATAAAAACAAAGGACTCGTGATCATGT
20611650 TTACTTTTCACCTATCATGTTATTTCAATGAGAGGATATCATTTACCTATTGATTAGGCTATGAA
261 TTACTTTTCACCTATCATGTTATTTCAATGAGAGGATATCATTTACCTATTGATTAGGCTATGAA
20611715 TTTCACTATTGTGAATGATGCTACATACTGCAACAGTTGTATATCCAACGCACCAACTTTCGATT
326 TTTCACTATTGTGAATGATGCTACATACTGCAACAGTTGTATATCCAACGCACCAACTTTCGATT
20611780 CCTTATCTATTTGAACTCAGGCTTTTACTTACATCAAATTATAGGAGTCACGTATACATACTCCG
391 CCTTATCTATTTGAACTCAGGCTTTTACTTACATCAAATTATAGGAGTCACGTATACATACTCCG
20611845 TCATCCACTCAGGATTAAGGTATGTCACACTATGAATGTTACAAGTGAATAAATTCATAAACGGA
456 TCATCCACTCAGGATTAAGGTATGTCACACTATGAATGTTACAAGTGAATAAATTCATAAACGGA
20611910 TCTAGGATCTATTCTACTTGGGTCTTGTCCGATGTATTGTCAGTCCAGTCAGTCATATCTATGTC
521 TCTAGGATCTATTCTACTTGGGTCTTGTCCGATGTATTGTCAGTCCAGTCAGTCATATCTATGTC
20611975 TCTATCTTTTGGGAGTCATTTGCTCTGATACTCAAGACAAAGCATCTTCCCAATTAGACTTTGTC
586 TCTATCTTTTGGGAGTCATTTGCTCTGATACTCAAGACAAAGCATCTTCCCAATTAGACTTTGTC
20612040 GAAACCATTTTTTTTGAAAAAGAAAAAAAACGGGGGTCGACTTTAAAAATGAAAATGGGAGTCGC
651 GAAACCATTTTTTTTGAAAAAGAAAAAAAACGGGGGTCGACTTTAAAAATGAAAATGGGAGTCGC
20612105 CACCGATCT
716 CACCGATCT
20612114 TT
1 TT
20612116 ATTGAAGGTG
Statistics
Matches: 726, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
724 726 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (724 bp):
TTCCACTATAGTATCATGACTGAGCTCTCCCTAATTACAAATCATTACGAAAGTTACTTACTCAA
TGTTTATCCAATGACCTTGTCATTAGTGTGTTACCCTCATAGGATATCCTTAATATCTTTGAGAT
AATTTTTTTTCTCCTAATATGATCCTATTTTATCTTATAATAACAATTACATCTTCCTTCATGAA
AAGTCAATTACTATCAAATAGTAACCAAGTCATTTATCATAAAAACAAAGGACTCGTGATCATGT
TTACTTTTCACCTATCATGTTATTTCAATGAGAGGATATCATTTACCTATTGATTAGGCTATGAA
TTTCACTATTGTGAATGATGCTACATACTGCAACAGTTGTATATCCAACGCACCAACTTTCGATT
CCTTATCTATTTGAACTCAGGCTTTTACTTACATCAAATTATAGGAGTCACGTATACATACTCCG
TCATCCACTCAGGATTAAGGTATGTCACACTATGAATGTTACAAGTGAATAAATTCATAAACGGA
TCTAGGATCTATTCTACTTGGGTCTTGTCCGATGTATTGTCAGTCCAGTCAGTCATATCTATGTC
TCTATCTTTTGGGAGTCATTTGCTCTGATACTCAAGACAAAGCATCTTCCCAATTAGACTTTGTC
GAAACCATTTTTTTTGAAAAAGAAAAAAAACGGGGGTCGACTTTAAAAATGAAAATGGGAGTCGC
CACCGATCT
Found at i:20612557 original size:19 final size:19
Alignment explanation
Indices: 20612533--20612570 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
20612523 AATTCCTAAA
*
20612533 CATCAAACATTGCTTTTAT
1 CATCAAACATTGCCTTTAT
20612552 CATCAAACATTGCCTTTAT
1 CATCAAACATTGCCTTTAT
20612571 TTTAAAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (19 bp):
CATCAAACATTGCCTTTAT
Found at i:20624282 original size:49 final size:49
Alignment explanation
Indices: 20624225--20624328 Score: 172
Period size: 49 Copynumber: 2.1 Consensus size: 49
20624215 TCATGTGTTA
* * * *
20624225 TAATTTTATACAGTGTTGAGCTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTAACCTTTTGATTCATGATATTAAACTTAATTT
20624274 TAATTTTATAAAGTGTTAACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTAACCTTTTGATTCATGATATTAAACTTAATTT
20624323 TAATTT
1 TAATTT
20624329 GTTTTTTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTAACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:20625883 original size:121 final size:121
Alignment explanation
Indices: 20625712--20626048 Score: 649
Period size: 121 Copynumber: 2.8 Consensus size: 121
20625702 AAGTAGATTA
* *
20625712 TAAAATATATTTAATAATAATTAT-TTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
1 TAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATTATATATTATGATTTTAG
20625776 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTAT
66 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTAT
20625832 TAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATTATATATTATGATTTTAG
1 TAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATTATATATTATGATTTTAG
20625897 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTAT
66 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTAT
20625953 TAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATTATATATTATGATTTTAG
1 TAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATTATATATTATGATTTTAG
20626018 TAAATTCATATAAGAATATTTAATATTAAGA
66 TAAATTCATATAAGAATATTTAATATTAAGA
20626049 TTTACCTAAA
Statistics
Matches: 214, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
120 23 0.11
121 191 0.89
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (121 bp):
TAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATTATATATTATGATTTTAG
TAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTAT
Done.