Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 67 of 136
Found at i:22226374 original size:136 final size:136
Alignment explanation
Indices: 22226197--22226472 Score: 516
Period size: 136 Copynumber: 2.0 Consensus size: 136
22226187 TCTGTGCGAG
* *
22226197 GACCATAGGGTAAACATTCTGGATTGTTCATCCATCCTTCATTCGTATCGCACTGCATCACCGGA
1 GACCATAGGGTAAACATTCTGGATTGTTCATCCATCATTCATTCGTATCGCACTACATCACCGGA
22226262 TGTACCTGCATAGAACCATATAAACTATCAATTTTCTTATTTAAAAGCTCTACCTGATTCAATAA
66 TGTACCTGCATAGAACCATATAAACTATCAATTTTCTTATTTAAAAGCTCTACCTGATTCAATAA
22226327 CATGAT
131 CATGAT
22226333 GACCATAGGGTAAACATTCTGGATTGTTCATCCATCATTCATTCGTATCGCACTACATCACCGGA
1 GACCATAGGGTAAACATTCTGGATTGTTCATCCATCATTCATTCGTATCGCACTACATCACCGGA
*
22226398 TGTACCTGCATAGAACCATATAAACTATCAATTTTCTTATTTAAAAGCTCTACCTGATTCGATAA
66 TGTACCTGCATAGAACCATATAAACTATCAATTTTCTTATTTAAAAGCTCTACCTGATTCAATAA
*
22226463 CATGGT
131 CATGAT
22226469 GACC
1 GACC
22226473 GCATCTAAGT
Statistics
Matches: 136, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 136 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (136 bp):
GACCATAGGGTAAACATTCTGGATTGTTCATCCATCATTCATTCGTATCGCACTACATCACCGGA
TGTACCTGCATAGAACCATATAAACTATCAATTTTCTTATTTAAAAGCTCTACCTGATTCAATAA
CATGAT
Found at i:22231129 original size:15 final size:15
Alignment explanation
Indices: 22231109--22231137 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22231099 CTGTGGTTAT
22231109 GTGCAAGTGTACATG
1 GTGCAAGTGTACATG
22231124 GTGCAAGTGTACAT
1 GTGCAAGTGTACAT
22231138 AGTACAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.28
Consensus pattern (15 bp):
GTGCAAGTGTACATG
Found at i:22231145 original size:15 final size:15
Alignment explanation
Indices: 22231112--22231146 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
22231102 TGGTTATGTG
* *
22231112 CAAGTGTACATGGTG
1 CAAGTGTACATAGTA
22231127 CAAGTGTACATAGTA
1 CAAGTGTACATAGTA
22231142 CAAGT
1 CAAGT
22231147 AATAAGTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (15 bp):
CAAGTGTACATAGTA
Found at i:22237463 original size:130 final size:125
Alignment explanation
Indices: 22237240--22237525 Score: 396
Period size: 130 Copynumber: 2.2 Consensus size: 125
22237230 TAATAGTTAC
* * * *
22237240 ACGGCGGAATCAGCACTTAGCAACCACCTTTATATTCAAGGATACGGGGAATCAGCACATGGCAA
1 ACGG-GGAATCAGCACTTAGCAACC-CCTTTATAATCAAGAATAAGGGGAATCAGCACATAGCAA
* * *
22237305 CCCCTTTTATAATCAAAGATGCGGGGAATCAGAACATAGCAACCCCTTTTTTTATATAATCAAAT
64 CCCCTTTGATAATCAAAGATACGGGGAATCAGAACATAGCAACCCC----TTT-TATAATCAAAG
22237370 AT
124 AT
*
22237372 ACGGGGAATCAGCACTTAGCAACCCCTTTGATAATC-AGAATAAGGGGAATCAGCACTTAGCAAC
1 ACGGGGAATCAGCACTTAGCAACCCCTTT-ATAATCAAGAATAAGGGGAATCAGCACATAGCAAC
*
22237436 CCCTTTGATAATC-AAGAATACGGGGAATCAGCACATAGCAACCCCTTTTATAATCAAAGAT
65 CCCTTTGATAATCAAAG-ATACGGGGAATCAGAACATAGCAACCCCTTTTATAATCAAAGAT
22237497 ACGGGGAATCAGCACTTAGCAACCCCTTT
1 ACGGGGAATCAGCACTTAGCAACCCCTTT
22237526 TACATTCATT
Statistics
Matches: 143, Mismatches: 9, Indels: 11
0.88 0.06 0.07
Matches are distributed among these distances:
125 41 0.29
126 3 0.02
129 3 0.02
130 67 0.47
131 25 0.17
132 4 0.03
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (125 bp):
ACGGGGAATCAGCACTTAGCAACCCCTTTATAATCAAGAATAAGGGGAATCAGCACATAGCAACC
CCTTTGATAATCAAAGATACGGGGAATCAGAACATAGCAACCCCTTTTATAATCAAAGAT
Found at i:22237526 original size:42 final size:42
Alignment explanation
Indices: 22237240--22237527 Score: 366
Period size: 42 Copynumber: 6.7 Consensus size: 42
22237230 TAATAGTTAC
* *
22237240 ACGGCGGAATCAGCACTTAGCAACCACC-TTTATATTCAAGGAT
1 ACGG-GGAATCAGCACTTAGCAACC-CCTTTTATAATCAAAGAT
* *
22237283 ACGGGGAATCAGCACATGGCAACCCCTTTTATAATCAAAGAT
1 ACGGGGAATCAGCACTTAGCAACCCCTTTTATAATCAAAGAT
* * * *
22237325 GCGGGGAATCAGAACATAGCAACCCCTTTTTTTATATAATCAAATAT
1 ACGGGGAATCAGCACTTAGCAACCCC----TTT-TATAATCAAAGAT
* *
22237372 ACGGGGAATCAGCACTTAGCAACCCCTTTGATAATCAGA-AT
1 ACGGGGAATCAGCACTTAGCAACCCCTTTTATAATCAAAGAT
* *
22237413 AAGGGGAATCAGCACTTAGCAACCCCTTTGATAATC-AAGAAT
1 ACGGGGAATCAGCACTTAGCAACCCCTTTTATAATCAAAG-AT
*
22237455 ACGGGGAATCAGCACATAGCAACCCCTTTTATAATCAAAGAT
1 ACGGGGAATCAGCACTTAGCAACCCCTTTTATAATCAAAGAT
22237497 ACGGGGAATCAGCACTTAGCAACCCCTTTTA
1 ACGGGGAATCAGCACTTAGCAACCCCTTTTA
22237528 CATTCATTAA
Statistics
Matches: 217, Mismatches: 19, Indels: 19
0.85 0.07 0.07
Matches are distributed among these distances:
40 1 0.00
41 39 0.18
42 129 0.59
43 10 0.05
46 3 0.01
47 35 0.16
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (42 bp):
ACGGGGAATCAGCACTTAGCAACCCCTTTTATAATCAAAGAT
Found at i:22249795 original size:11 final size:11
Alignment explanation
Indices: 22249775--22249873 Score: 63
Period size: 11 Copynumber: 9.4 Consensus size: 11
22249765 TAAAAATTAA
22249775 AAAAAGTATTTT
1 AAAAA-TATTTT
22249787 AAAAATATTTT
1 AAAAATATTTT
*
22249798 --AAA-A-TTA
1 AAAAATATTTT
22249805 AAAAAGTATTTT
1 AAAAA-TATTTT
*
22249817 AAAAAAATTTT
1 AAAAATATTTT
22249828 --AAA-A-TTT
1 AAAAATATTTT
22249835 AAAAA-ATTTT
1 AAAAATATTTT
22249845 AAAAAAAGTATTTT
1 --AAAAA-TATTTT
*
22249859 AAAAGTATTTT
1 AAAAATATTTT
22249870 AAAA
1 AAAA
22249874 TAAATAATAA
Statistics
Matches: 71, Mismatches: 4, Indels: 25
0.71 0.04 0.25
Matches are distributed among these distances:
7 5 0.07
8 2 0.03
9 13 0.18
10 3 0.04
11 22 0.31
12 21 0.30
14 5 0.07
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:22249810 original size:30 final size:30
Alignment explanation
Indices: 22249760--22249849 Score: 130
Period size: 30 Copynumber: 3.0 Consensus size: 30
22249750 ACCAAAAATT
22249760 TATTTTAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATT-AAAAAAGTATTTTAAAAA
22249792 TATTTTAAAATTAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAGTATTTTAAAAA
* *
22249822 AATTTTAAAATTTAAAAA--ATTTTAAAAA
1 TATTTTAAAATTAAAAAAGTATTTTAAAAA
22249850 AAGTATTTTA
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
28 10 0.18
30 34 0.61
31 6 0.11
32 6 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (30 bp):
TATTTTAAAATTAAAAAAGTATTTTAAAAA
Found at i:22250836 original size:21 final size:22
Alignment explanation
Indices: 22250812--22250858 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
22250802 AAAGTTAAAA
22250812 TTTATTATTAACAAAT-TTTAG
1 TTTATTATTAACAAATATTTAG
**
22250833 TTTATTATTAATTAATATTTAG
1 TTTATTATTAACAAATATTTAG
22250855 TTTA
1 TTTA
22250859 AGTTAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (22 bp):
TTTATTATTAACAAATATTTAG
Found at i:22255676 original size:20 final size:20
Alignment explanation
Indices: 22255633--22255676 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
22255623 TCCTGATTTT
* *
22255633 ATTTGATTCCAATCAATTTG
1 ATTTGATTCCAATCAAATTA
**
22255653 ATTTGATTTTAATCAAATTA
1 ATTTGATTCCAATCAAATTA
22255673 ATTT
1 ATTT
22255677 AATTACTCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (20 bp):
ATTTGATTCCAATCAAATTA
Found at i:22256153 original size:20 final size:21
Alignment explanation
Indices: 22256111--22256167 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
22256101 TGAATTTTAA
*
22256111 ATATAAATATTTATTTTATTTT
1 ATATAAATATTT-GTTTATTTT
22256133 ATATAAATATTTGTTTA-TTT
1 ATATAAATATTTGTTTATTTT
**
22256153 ATATTCATATTTGTT
1 ATATAAATATTTGTT
22256168 CGCTAACATG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 16 0.50
21 4 0.12
22 12 0.38
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (21 bp):
ATATAAATATTTGTTTATTTT
Found at i:22256561 original size:87 final size:87
Alignment explanation
Indices: 22256282--22256711 Score: 515
Period size: 87 Copynumber: 4.9 Consensus size: 87
22256272 TGAAATAAAA
* * * * *
22256282 ATTAAAATTGAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTCCTTTTA
1 ATTAAAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATT-C--TAA
*
22256347 TTTT-ATTTTATTTCC-AAACGAGA
63 TTTTGATTTTATTTCCAAAACGAGT
* * * **
22256370 ATTAAAGTTAAATAAAATTTATTTCAGGATTTATTCCTACCGTTCAACGGATTTTATTCT-ATTT
1 ATTAAAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTAATTT
* * *
22256434 TTATTTTATTTCCAAAACAAAT
66 TGATTTTATTTCCAAAACGAGT
* * * *
22256456 ATTAAAATTAAATAAAATTTGTTCCGGGATTTATTCTCGTCGTTCAACAGATTTTATTCTAATTT
1 ATTAAAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTAATTT
*
22256521 TGATTTTGTTTCCAAAACGAGT
66 TGATTTTATTTCCAAAACGAGT
* * * *
22256543 ATTAGAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCTGTTTAACGGATTTTATTCCAATTT
1 ATTAAAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTAATTT
* *
22256608 TGACTTTGTTTCCAAAACGAGT
66 TGATTTTATTTCCAAAACGAGT
* * * * * *
22256630 ATTAGATTTAAATAAAATCTGTTTCGGAATTTATTCCCGCCGTTTAACGGATTTTATTCCAATTT
1 ATTAAAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTAATTT
* *
22256695 TAATTTTTTTTCCAAAA
66 TGATTTTATTTCCAAAA
22256712 TGAGAAATGG
Statistics
Matches: 300, Mismatches: 39, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
84 5 0.02
85 12 0.04
86 56 0.19
87 176 0.59
88 51 0.17
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (87 bp):
ATTAAAATTAAATAAAATTTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTAATTT
TGATTTTATTTCCAAAACGAGT
Found at i:22256853 original size:87 final size:86
Alignment explanation
Indices: 22256733--22256992 Score: 308
Period size: 87 Copynumber: 3.0 Consensus size: 86
22256723 CCAAAATGAG
* * * * *
22256733 AAACGAGATTTAATTCAATTTAATACTCATTTTGGAAACAAAATAAAAAATGAAATAAAATTTGT
1 AAAC-AGATTTTATTTAATTTAATACTCGTTTTGGAAATAAAATAAAAAATGAAATAAAATCTGT
* *
22256798 TGAACGGTGGGAATAAATCTTA
65 TGAACGGCGGGAATAAATCCTA
* *
22256820 AAACAGATTTTATTTAATTTTAATACTCGTTTTGAAAATAAAATAAAAAATGGAATAAAATCTGT
1 AAACAGATTTTATTTAA-TTTAATACTCGTTTTGGAAATAAAATAAAAAATGAAATAAAATCTGT
* *
22256885 TGAATGGCGGGAATAAATCCTG
65 TGAACGGCGGGAATAAATCCTA
* * *
22256907 AAATAGATTTTATTTAACTTTAATTCTCG-TTTGGAAATAAAATAAAATAAAATG-AATAAAACC
1 AAACAGATTTTATTTAA-TTTAATACTCGTTTTGGAAATAAAAT--AA-AAAATGAAATAAAATC
* *
22256970 CGTTGAACTGCGGGAATAAATCC
62 TGTTGAACGGCGGGAATAAATCC
22256993 CAATTTTAAT
Statistics
Matches: 150, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
86 24 0.16
87 90 0.60
88 30 0.20
89 6 0.04
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (86 bp):
AAACAGATTTTATTTAATTTAATACTCGTTTTGGAAATAAAATAAAAAATGAAATAAAATCTGTT
GAACGGCGGGAATAAATCCTA
Found at i:22257143 original size:20 final size:21
Alignment explanation
Indices: 22257118--22257160 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
22257108 CATGTTAGCT
22257118 AACAAATATGAATAT-AAATA
1 AACAAATATGAATATAAAATA
**
22257138 AACAAATATTTATATAAAATA
1 AACAAATATGAATATAAAATA
22257159 AA
1 AA
22257161 ATAAATACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (21 bp):
AACAAATATGAATATAAAATA
Found at i:22259650 original size:3 final size:3
Alignment explanation
Indices: 22259637--22259707 Score: 67
Period size: 3 Copynumber: 24.0 Consensus size: 3
22259627 TTATTTACTC
* * *
22259637 ATT ATT A-T ATT ATT -GT ATT A-T ACT ATT AGTT TTGT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT AT-T ATT ATT ATT
*
22259681 ATT ATT ATT ATT ATC ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
22259708 TATTCATTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
2 5 0.09
3 47 0.84
4 4 0.07
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:22264975 original size:89 final size:89
Alignment explanation
Indices: 22264755--22264976 Score: 302
Period size: 89 Copynumber: 2.5 Consensus size: 89
22264745 AAAATAATAT
** * *
22264755 ATCTTGTCTTCCTGTACCGGCAGC-AAAGCAGATCAAAGACACCAGCCTGACCTCCTTGAGTTTG
1 ATCTTGTCTTCCTGTACTAGCAGCGAAA-CAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTG
**
22264819 CAGTGGAACAGACTGAAGATAGTAG
65 CAGCAGAACAGACTGAAGATAGTAG
* *
22264844 ATCTTGTCTTCCTGTACTAGCAGCGAAACAGATCGAAAACACCAGCTTGACCTCCCTGAGTTTGC
1 ATCTTGTCTTCCTGTACTAGCAGCGAAACAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGC
*
22264909 AGCAGAACAGACTGAAGATATTAG
66 AGCAGAACAGACTGAAGATAGTAG
* * ** *
22264933 ATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATTGAAGACACCA
1 ATCTTGTCTTCCTGTACTAGCAGCGAAACAGATCGAAGACACCA
22264977 ATCATATCTC
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
89 114 0.97
90 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (89 bp):
ATCTTGTCTTCCTGTACTAGCAGCGAAACAGATCGAAGACACCAGCCTGACCTCCCTGAGTTTGC
AGCAGAACAGACTGAAGATAGTAG
Found at i:22265014 original size:89 final size:89
Alignment explanation
Indices: 22264717--22264955 Score: 284
Period size: 89 Copynumber: 2.7 Consensus size: 89
22264707 CAAGTCTTAT
* * * * * * * **
22264717 CTCCCTGAAATTGTAGCGGAATAGACTAAAAATAATATATCTTGTCTTCCTGTACCGGCAGC-AA
1 CTCCCTGAGATTGCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTAGCAGCGAA
*
22264781 AGCAGATC-AAAGACACCAGCCTGAC
66 A-CAGATCGAAA-ACACCAGCATGAC
* * *
22264806 CTCCTTGAGTTTGCAGTGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTAGCAGCGAA
1 CTCCCTGAGATTGCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTAGCAGCGAA
*
22264871 ACAGATCGAAAACACCAGCTTGAC
66 ACAGATCGAAAACACCAGCATGAC
* * * *
22264895 CTCCCTGAGTTTGCAGCAGAACAGACTGAAGATATTAGATCTTGTCTTCCTGTATTAGCAG
1 CTCCCTGAGATTGCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTAGCAG
22264956 TGAAGTAGAT
Statistics
Matches: 130, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
89 124 0.95
90 6 0.05
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (89 bp):
CTCCCTGAGATTGCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTAGCAGCGAA
ACAGATCGAAAACACCAGCATGAC
Found at i:22265171 original size:99 final size:99
Alignment explanation
Indices: 22264995--22265179 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 99
22264985 TCTTTGGCAT
*
22264995 TGCAGGGGAACAGATTGAAGCTACAACGGCGAATCTTGTTCCCCAACATTGCAATTTAAAAGATT
1 TGCAGGGGAACAGATTGAAGCTACAACGGCGAATCTTGTTCCCCAACATTGCAATTTAAAAAATT
** *
22265060 GAAGCCGTAACGGCGAATCTTACTTCCCTGGCGG
66 GAAGCCACAACGGCAAATCTTACTTCCCTGGCGG
* * * * *
22265094 TGCAGTGGAACATATTGAAGCTACAATGGTGAATCTTGTTCCCCGACATTGCAA-TTAAACAAAT
1 TGCAGGGGAACAGATTGAAGCTACAACGGCGAATCTTGTTCCCCAACATTGCAATTTAAA-AAAT
*
22265158 TGAAGCTACAACGGCAAATCTT
65 TGAAGCCACAACGGCAAATCTT
22265180 GTTCCCCGAC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
98 5 0.07
99 70 0.93
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (99 bp):
TGCAGGGGAACAGATTGAAGCTACAACGGCGAATCTTGTTCCCCAACATTGCAATTTAAAAAATT
GAAGCCACAACGGCAAATCTTACTTCCCTGGCGG
Found at i:22265226 original size:49 final size:49
Alignment explanation
Indices: 22265006--22265314 Score: 235
Period size: 49 Copynumber: 6.2 Consensus size: 49
22264996 GCAGGGGAAC
* *
22265006 AGATTGAAGCTACAACGGCGAATCTTGTTCCCCAACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAAAA
*** * * * ** * ** *
22265055 AGATTGAAGCCGTAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTT-GTTCCCCGACATTGCAATTAAAA
* * *
22265105 ATATTGAAGCTACAATGGTGAATCTTGTTCCCCGACATTGCAATTAAACA
1 AGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAAA-A
* *
22265155 A-ATTGAAGCTACAACGGCAAATCTTGTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAAAA
* ** * * ** *
22265203 AGATTGAAGCCACAACGGTAAATCTTACTTCCCTGACGGTGC-AGTAGAAA
1 AGATTGAAGCTACAACGGCGAATCTT-GTTCCCCGACATTGCAATTA-AAA
*** * * * * * *
22265253 AGATTGAAGCCGTAACGACGAATTTTACTTCCCCGATATTACAGTTAAAA
1 AGATTGAAGCTACAACGGCGAATCTT-GTTCCCCGACATTGCAATTAAAA
22265303 AGATTGAAGCTA
1 AGATTGAAGCTA
22265315 TACATTACAG
Statistics
Matches: 199, Mismatches: 55, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
48 2 0.01
49 104 0.52
50 91 0.46
51 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (49 bp):
AGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAAAA
Found at i:22265593 original size:44 final size:44
Alignment explanation
Indices: 22265321--22265965 Score: 364
Period size: 44 Copynumber: 14.9 Consensus size: 44
22265311 GCTATACATT
* * *** * *
22265321 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAG-GCCACATC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAC
* ** *
22265364 -CAG-TCTTATCTCCCTGAAGTTGCAGAGGGAGCAGACAGAAAAAAA
1 ACAGATCTTATCTCCCTGAAGTTGCAG-TGGAGCAG--ATTAAAAAC
* * * *
22265409 ACCA-ATCCTATCTCCCTGAAGTTACATTGGAG-AGGATT-AAACC
1 A-CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTAAAAAC
* * * * * **
22265452 ATAGATTTTATCTCTCTGAAGTTACAGTAGAGCAGATT--GCAC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAC
* * * **
22265494 CCAG-TCTTATCTCCCTGAAATTGCAATGGAGCAGACAAAAGAAGC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-AA-C
* * * *
22265539 -CA-ATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAAAC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAC
* * ***
22265581 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CGCAC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAC
* * * * *
22265623 CCAG-TCTTATCTCCTTAAAGTTGCAGTGGAGCAGATAGAAAAAA
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAAAC
* *
22265667 ACCA-ATCTTATCTCTCTGAAGTTGCAGTGGAG-AGGATTAAAACC
1 A-CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTAAAAAC
* * * *
22265711 ATATATCTTATCTCTCTGAAGTTGCAGTGGAG-AGGATTAAAACC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTAAAAAC
* * * *
22265755 ATATATCTTATCTCTCTGAAGTTGCAGTGGAG-AGGATTAAAACC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTAAAAAC
* * * * * *** *
22265799 ATATATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAC
* **
22265842 -CAG-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAAC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AAAC
* * **
22265886 -CA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATG
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAC
* * * *
22265928 ATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATT
1 ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
22265966 GCATCAGAAT
Statistics
Matches: 472, Mismatches: 99, Indels: 61
0.75 0.16 0.10
Matches are distributed among these distances:
41 100 0.21
42 22 0.05
43 43 0.09
44 246 0.52
45 35 0.07
46 5 0.01
47 21 0.04
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
ACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAAC
Found at i:22265732 original size:130 final size:130
Alignment explanation
Indices: 22265323--22265738 Score: 559
Period size: 130 Copynumber: 3.2 Consensus size: 130
22265313 TATACATTAC
** * * * *
22265323 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGCCACATCCAGTCTTATCTCCCTGAAGTTGCA
1 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCACCCAGTCTTATCTCCTTAAAGTTGCA
* * *
22265388 GAGGGAGCAGACAGAAAAAAAACCAATCCTATCTCCCTGAAGTTACATTGGAGAGGATT-AAACC
66 G-TGGAGCAGACAG-AAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACC
22265452 AT
129 AT
* * * *
22265454 AGATTTTATCTCTCTGAAGTTACAGTAGAGCAGATTGCACCCAGTCTTATCTCCCTGAAA-TTGC
1 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCACCCAGTCTTATCT-CCTTAAAGTTGC
* * * * * * *
22265518 AATGGAGCAGACA-AAAGAAGCCAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAAACA
65 AGTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCA
*
22265582 C
130 T
22265583 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCACCCAGTCTTATCTCCTTAAAGTTGCA
1 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCACCCAGTCTTATCTCCTTAAAGTTGCA
* * *
22265648 GTGGAGCAGATAGAAAAAAACCAATCTTATCTCTCTGAAGTTGCAGTGGAGAGGATTAAAACCAT
66 GTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCAT
*
22265713 ATATCTTATCTCTCTGAAGTTGCAGT
1 AGATCTTATCTCTCTGAAGTTGCAGT
22265739 GGAGAGGATT
Statistics
Matches: 244, Mismatches: 37, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
128 43 0.18
129 69 0.28
130 78 0.32
131 50 0.20
132 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (130 bp):
AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCACCCAGTCTTATCTCCTTAAAGTTGCA
GTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCAT
Found at i:22265786 original size:218 final size:217
Alignment explanation
Indices: 22265545--22265955 Score: 624
Period size: 218 Copynumber: 1.9 Consensus size: 217
22265535 AAGCCAATCC
* *
22265545 TATCTCCCTGAAATTGTAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAATTGCAGTGGAGAGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
22265610 GAGCAGATCGCACCCAGTCTTATCTCCTTAAAGTTGCAGTGGAGCAGATAGAAAAAAACCAATCT
66 GAGCAGATCGCACCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAG-AAAAAACCAATCC
* * *
22265675 TATCTCTCTGAAGTTGCAGTGGAGAGGATTAAAACCATATATCTTATCTCTCTGAAGTTGCAGTG
130 TATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTG
22265740 GAGAGGATTAAAACCATATATCT
195 GAGAGGATTAAAACCATATATCT
* * * * *
22265763 TATCTCTCTGAAGTTGCAGTGGAGAGGATTAAAACCATATATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAATTGCAGTGGAGAGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * *
22265828 GAGTAGATCGCATCCAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAACCAATCCT
66 GAGCAGATCGCACCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAAAAACCAATCCT
* **
22265893 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATAGATCTTATCTCTCTAAAGTTGCAGT
131 ATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGT
22265956 AGAGCAGATT
Statistics
Matches: 172, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
217 69 0.40
218 103 0.60
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (217 bp):
TATCTCCCTGAAATTGCAGTGGAGAGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
GAGCAGATCGCACCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAAAAACCAATCCT
ATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTGG
AGAGGATTAAAACCATATATCT
Found at i:22265869 original size:129 final size:129
Alignment explanation
Indices: 22265716--22265970 Score: 336
Period size: 129 Copynumber: 2.0 Consensus size: 129
22265706 AAACCATATA
* * ** * *
22265716 TCTTATCTCTCTGAAGTTGCAGTGGAG-AG-GATTA-AAACCATATATCTTATCTCTCTGAAGTT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACC--A-ATCCTATCTCCCTGAAGTT
* * *
22265778 GCAGTGGAGAGGATTAAAACCATATATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCC
63 GCAGTGGAGAGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCC
22265843 AG
128 AG
*
22265845 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCA
* ** *
22265910 GTGGAGCGGATTAAAATGATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTGCATC
66 GTGGAGAGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATC
22265971 AGAATTTATT
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
129 99 0.91
130 3 0.03
131 2 0.02
132 5 0.05
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCA
GTGGAGAGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAG
Found at i:22266411 original size:18 final size:19
Alignment explanation
Indices: 22266378--22266416 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
22266368 AATACAAATT
22266378 AACCCTCAGCCCAAA-CTA
1 AACCCTCAGCCCAAACCTA
22266396 AACCCT-AGCCCAAAACCTA
1 AACCCTCAGCCC-AAACCTA
22266415 AA
1 AA
22266417 GTAATTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 9 0.47
19 5 0.26
ACGTcount: A:0.44, C:0.41, G:0.05, T:0.10
Consensus pattern (19 bp):
AACCCTCAGCCCAAACCTA
Found at i:22273523 original size:14 final size:15
Alignment explanation
Indices: 22273497--22273528 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
22273487 AATTAATTTA
22273497 AAATTTCATTTAATT
1 AAATTTCATTTAATT
22273512 AAATTT-ATTTAATT
1 AAATTTCATTTAATT
22273526 AAA
1 AAA
22273529 AACCTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATTTCATTTAATT
Found at i:22276077 original size:18 final size:18
Alignment explanation
Indices: 22276048--22276088 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
22276038 TCTTTTCATA
22276048 ATTTTTTATGAACTTTTAT
1 ATTTTTTATGAA-TTTTAT
*
22276067 ATTTTTT-TGAATTTTTT
1 ATTTTTTATGAATTTTAT
22276084 ATTTT
1 ATTTT
22276089 GAACATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 4 0.19
19 7 0.33
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (18 bp):
ATTTTTTATGAATTTTAT
Found at i:22276728 original size:29 final size:28
Alignment explanation
Indices: 22276681--22276749 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
22276671 ATTTAATTCC
*
22276681 TTTATTAAAATGTTAAAAA-ATAACTATTA
1 TTTATTAAAATATTAAAAATATAA--ATTA
* *
22276710 TTTATTAAAATAATTAAAATTTTAAATTA
1 TTTATTAAAAT-ATTAAAAATATAAATTA
22276739 TTTATTAAAAT
1 TTTATTAAAAT
22276750 TTTATCTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 26 0.74
30 6 0.17
31 3 0.09
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (28 bp):
TTTATTAAAATATTAAAAATATAAATTA
Found at i:22284644 original size:20 final size:21
Alignment explanation
Indices: 22284603--22284644 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
22284593 TTTTTAAACG
22284603 ATATTTTTAATTAAGATTTTA
1 ATATTTTTAATTAAGATTTTA
22284624 ATATTTTT-ATTAA-ATTCTTA
1 ATATTTTTAATTAAGATT-TTA
22284644 A
1 A
22284645 CATTAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 3 0.15
20 9 0.45
21 8 0.40
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
ATATTTTTAATTAAGATTTTA
Found at i:22295918 original size:19 final size:19
Alignment explanation
Indices: 22295894--22296056 Score: 272
Period size: 19 Copynumber: 8.3 Consensus size: 19
22295884 AATTTTTGAG
22295894 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22295913 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22295932 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
22295953 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22295972 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
22295993 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22296012 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
22296033 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22296052 GATAT
1 GATAT
22296057 ATGCAGCCGT
Statistics
Matches: 138, Mismatches: 0, Indels: 12
0.92 0.00 0.08
Matches are distributed among these distances:
19 81 0.59
21 57 0.41
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22295939 original size:40 final size:40
Alignment explanation
Indices: 22295895--22296061 Score: 334
Period size: 40 Copynumber: 4.2 Consensus size: 40
22295885 ATTTTTGAGG
22295895 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
22295935 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
22295975 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
22296015 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
22296055 ATATGCA
1 ATATGCA
22296062 GCCGTTGATG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
Found at i:22302679 original size:132 final size:132
Alignment explanation
Indices: 22301504--22302662 Score: 2014
Period size: 132 Copynumber: 8.8 Consensus size: 132
22301494 CCTACAGCGA
*** * *
22301504 AGCAGATCGAAGATGGCGGATTTTACCTTATTGTGGTTACAGTGTAGTACATTAAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * * * *
22301569 TCTACTTCCCTGGACAACAGTGGATTAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
22301634 GG
131 GG
22301636 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
22301701 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
66 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
22301766 GG
131 GG
22301768 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
22301833 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
66 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
22301898 GG
131 GG
22301900 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
22301965 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
66 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
22302030 GG
131 GG
22302032 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
22302097 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
66 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
22302162 GG
131 GG
22302164 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* *
22302229 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGTAGT
66 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
22302294 GG
131 GG
* *
22302296 AGTAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * *
22302361 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
22302426 GG
131 GG
*
22302428 AGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * *
22302493 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
22302558 GG
131 GG
* * * *
22302560 AGTAGATCAAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * ** *
22302625 CCT-CTCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
66 TCTACT-TCCCTGGACAATAGTGGAATAGATTGAAGATT
22302663 GCAAGTATTA
Statistics
Matches: 997, Mismatches: 29, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
131 2 0.00
132 995 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCACCTTAAGCAGAAGT
GG
Found at i:22302932 original size:19 final size:19
Alignment explanation
Indices: 22302908--22302963 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
22302898 AATTTTTGAG
22302908 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22302927 GATATGTGCAATCTTGGATAT
1 GATA--TGCAATCTTAGATAT
22302948 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22302964 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
21 18 0.55
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22302938 original size:21 final size:21
Alignment explanation
Indices: 22302912--22302970 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
22302902 TTTGAGGATA
22302912 TGCAATCTTAGATATGATATG
1 TGCAATCTTAGATATGATATG
*
22302933 TGCAATCTTGGATATGATA--
1 TGCAATCTTAGATATGATATG
22302952 TGCAATCTTAGA-A-GATATG
1 TGCAATCTTAGATATGATATG
22302971 ATTTTGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 4 0.12
18 1 0.03
19 11 0.32
21 18 0.53
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (21 bp):
TGCAATCTTAGATATGATATG
Found at i:22302999 original size:21 final size:23
Alignment explanation
Indices: 22302955--22302999 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
22302945 TATGATATGC
*
22302955 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
22302978 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
22302999 A
1 A
22303000 GATACCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:22309653 original size:18 final size:17
Alignment explanation
Indices: 22309625--22309669 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
22309615 AATCCAAAAT
*
22309625 AAATTTTTAAAATTCAA
1 AAATTTATAAAATTCAA
*
22309642 AATATTTATAAAAATTCCA
1 AA-ATTTAT-AAAATTCAA
22309661 AAATTTATA
1 AAATTTATA
22309670 TTTTTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 3 0.12
18 11 0.46
19 10 0.42
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATTTATAAAATTCAA
Found at i:22309657 original size:19 final size:18
Alignment explanation
Indices: 22309633--22309669 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
22309623 ATAAATTTTT
22309633 AAAATTCAAAATATTTATA
1 AAAATTCAAAA-ATTTATA
*
22309652 AAAATTCCAAAATTTATA
1 AAAATTCAAAAATTTATA
22309670 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATTCAAAAATTTATA
Found at i:22309720 original size:21 final size:20
Alignment explanation
Indices: 22309674--22309721 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
22309664 TTTATATTTT
*
22309674 TTAAAAAATTATAAAATAAT
1 TTAAAAAATTATAAAATAAG
22309694 TCTAAAAAATATATAAAGA-AAG
1 T-TAAAAAAT-TATAAA-ATAAG
22309716 TTAAAA
1 TTAAAA
22309722 TTTTCTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 13 0.54
22 9 0.38
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (20 bp):
TTAAAAAATTATAAAATAAG
Found at i:22309857 original size:16 final size:17
Alignment explanation
Indices: 22309827--22309859 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22309817 CTTTGAAAAA
22309827 GTTTTCAAATATATATG
1 GTTTTCAAATATATATG
*
22309844 GTTTT-AAATTTATATG
1 GTTTTCAAATATATATG
22309860 CTTTAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (17 bp):
GTTTTCAAATATATATG
Found at i:22311741 original size:24 final size:25
Alignment explanation
Indices: 22311714--22311761 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
22311704 AAAGGAAATT
22311714 TTAAAGAACATAAAA-GAAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAAA
** *
22311738 TTAAATTACTTAAAACGAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAA
22311762 TATGGGGATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (25 bp):
TTAAAGAACATAAAACGAAAAAAAA
Found at i:22314242 original size:24 final size:25
Alignment explanation
Indices: 22314210--22314282 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 25
22314200 TGATACAAGA
*
22314210 TTTTAATATTTTAAATCAATT-TTT
1 TTTTTATATTTTAAATCAATTATTT
** *
22314234 TTTTTATATTTTATCTTAATTATTT
1 TTTTTATATTTTAAATCAATTATTT
*
22314259 TTATTTATATTTAAAATCACATTA
1 TT-TTTATATTTTAAATCA-ATTA
22314283 AAAATAAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
24 17 0.45
25 5 0.13
26 12 0.32
27 4 0.11
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (25 bp):
TTTTTATATTTTAAATCAATTATTT
Found at i:22319365 original size:35 final size:35
Alignment explanation
Indices: 22319319--22319388 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
22319309 TAGTACTATG
*
22319319 TATAATATGATTGTTTGAGTTGGTATCGCGAGTTA
1 TATAATATGATTGTTTGAGTTGGTATCACGAGTTA
22319354 TATAATATGATTGTTTGAGTTGGTATCACGAGTTA
1 TATAATATGATTGTTTGAGTTGGTATCACGAGTTA
22319389 ATTCAACATC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.43
Consensus pattern (35 bp):
TATAATATGATTGTTTGAGTTGGTATCACGAGTTA
Found at i:22320348 original size:42 final size:42
Alignment explanation
Indices: 22320262--22320358 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
22320252 AGGTTGCAAG
* ***
22320262 TCAGTGAGTTACACGGCCTAACACAAGGGCGTGTGGGGCAAC
1 TCAGAGAGTTACACGGCCTAACACAAGGGCGTGTGACCCAAC
* * * *
22320304 TCAGATAGTTACACGGCCTGACACACGGGCGTGTGACCCTAC
1 TCAGAGAGTTACACGGCCTAACACAAGGGCGTGTGACCCAAC
22320346 TCAGAGAGTTACA
1 TCAGAGAGTTACA
22320359 TGGGTGAGGA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.26, G:0.29, T:0.19
Consensus pattern (42 bp):
TCAGAGAGTTACACGGCCTAACACAAGGGCGTGTGACCCAAC
Found at i:22321433 original size:7 final size:7
Alignment explanation
Indices: 22321421--22321445 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22321411 ATCAAACTTA
22321421 CAAATAT
1 CAAATAT
22321428 CAAATAT
1 CAAATAT
22321435 CAAATAT
1 CAAATAT
22321442 CAAA
1 CAAA
22321446 GTCACACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (7 bp):
CAAATAT
Found at i:22324406 original size:20 final size:20
Alignment explanation
Indices: 22324383--22324421 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22324373 TACTTTGCTT
22324383 AAAGTATCGATACCTTTATC
1 AAAGTATCGATACCTTTATC
* *
22324403 AAAGTGTCGATATCTTTAT
1 AAAGTATCGATACCTTTAT
22324422 TCTGGTATCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (20 bp):
AAAGTATCGATACCTTTATC
Found at i:22335250 original size:5 final size:5
Alignment explanation
Indices: 22335242--22335276 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
22335232 TAAAATTAAA
22335242 TTTAT TTTAT TAATTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT T--TTAT TTTAT TTTAT TTTAT TTT
22335277 TAAATAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 23 0.82
7 5 0.18
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:22350330 original size:38 final size:38
Alignment explanation
Indices: 22350288--22350403 Score: 180
Period size: 38 Copynumber: 3.1 Consensus size: 38
22350278 TTTTTTATAT
22350288 TTTATATTTAAAATAGTAAAAATAACATAAAAATTCTA
1 TTTATATTTAAAATAGTAAAAATAACATAAAAATTCTA
22350326 TTTATATTTAAAATAGTAAAAATAACATAAAAATTCTA
1 TTTATATTTAAAATAGTAAAAATAACATAAAAATTCTA
* * **
22350364 TTATTTGTTTTCAA-AGTAAAAATAACATAAAAATTCTA
1 TT-TATATTTAAAATAGTAAAAATAACATAAAAATTCTA
22350402 TT
1 TT
22350404 ATTTGTTTTC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 66 0.90
39 7 0.10
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (38 bp):
TTTATATTTAAAATAGTAAAAATAACATAAAAATTCTA
Found at i:22350404 original size:38 final size:38
Alignment explanation
Indices: 22350302--22350452 Score: 227
Period size: 38 Copynumber: 4.0 Consensus size: 38
22350292 TATTTAAAAT
* * **
22350302 AGTAAAAATAACATAAAAATTCTATT-TATATTTAAAA
1 AGTAAAAATAACATAAAAATTCTATTATTTGTTTTCAA
22350339 TAGTAAAAATAACATAAAAATTCTATTATTTGTTTTCAA
1 -AGTAAAAATAACATAAAAATTCTATTATTTGTTTTCAA
22350378 AGTAAAAATAACATAAAAATTCTATTATTTGTTTTCAA
1 AGTAAAAATAACATAAAAATTCTATTATTTGTTTTCAA
*
22350416 A-AAAAAATAACA-AAAAATTCTATTATTTGTTTTCAA
1 AGTAAAAATAACATAAAAATTCTATTATTTGTTTTCAA
22350452 A
1 A
22350453 AATAATATAT
Statistics
Matches: 107, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
36 25 0.23
37 10 0.09
38 65 0.61
39 7 0.07
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.38
Consensus pattern (38 bp):
AGTAAAAATAACATAAAAATTCTATTATTTGTTTTCAA
Found at i:22352556 original size:22 final size:21
Alignment explanation
Indices: 22352524--22352573 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
22352514 CACAGCAGCT
*
22352524 CCCGCATGTCGCGCACGTCGCC
1 CCCGCACGTCGCGCACGTCG-C
*
22352546 CCCGCACGTCGCGCACGTTGC
1 CCCGCACGTCGCGCACGTCGC
22352567 CCCGCAC
1 CCCGCAC
22352574 TCCAGTGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.10, C:0.52, G:0.26, T:0.12
Consensus pattern (21 bp):
CCCGCACGTCGCGCACGTCGC
Found at i:22353433 original size:5 final size:5
Alignment explanation
Indices: 22353412--22353452 Score: 64
Period size: 5 Copynumber: 8.2 Consensus size: 5
22353402 TATCATAGTT
* *
22353412 TTTTA TGTTA CTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
22353453 CTTTTATTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:22356549 original size:21 final size:21
Alignment explanation
Indices: 22356525--22356568 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
22356515 GACTGGTGGG
22356525 AAAGAAAATTTCAAGAGGTTC
1 AAAGAAAATTTCAAGAGGTTC
22356546 AAAGAAAATTTCAAGAGGTTC
1 AAAGAAAATTTCAAGAGGTTC
22356567 AA
1 AA
22356569 GCACGAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.09, G:0.18, T:0.23
Consensus pattern (21 bp):
AAAGAAAATTTCAAGAGGTTC
Found at i:22361698 original size:310 final size:310
Alignment explanation
Indices: 22361136--22361757 Score: 1244
Period size: 310 Copynumber: 2.0 Consensus size: 310
22361126 TTGTTTCATG
22361136 ACATGATGCACAAAGAGATTGAGGTTTATGTTGATGATATGATTGCAAAATCCAGAACGGAAGAG
1 ACATGATGCACAAAGAGATTGAGGTTTATGTTGATGATATGATTGCAAAATCCAGAACGGAAGAG
22361201 GAGCATGTTCAAGTTCTGAGGAAATTGTTTTTGAGACTATGAAATTTCCAGCTCAAGCTTAATCC
66 GAGCATGTTCAAGTTCTGAGGAAATTGTTTTTGAGACTATGAAATTTCCAGCTCAAGCTTAATCC
22361266 AACAAAATGCACCTTTGGAGCCAGATCAGGAAAGTTACTAGGCTTCATATTCAGTGGGAAAAGAA
131 AACAAAATGCACCTTTGGAGCCAGATCAGGAAAGTTACTAGGCTTCATATTCAGTGGGAAAAGAA
22361331 TTGAGGTTGACCTAGACAAATTCAGGGTAATACGAGATTTGCCTCTACCACGCACTCAGAAAGAA
196 TTGAGGTTGACCTAGACAAATTCAGGGTAATACGAGATTTGCCTCTACCACGCACTCAGAAAGAA
22361396 GTACGGGGTTTTCTGAGAAGATTGAATTACATTGCTCGGTTTATTTCACA
261 GTACGGGGTTTTCTGAGAAGATTGAATTACATTGCTCGGTTTATTTCACA
22361446 ACATGATGCACAAAGAGATTGAGGTTTATGTTGATGATATGATTGCAAAATCCAGAACGGAAGAG
1 ACATGATGCACAAAGAGATTGAGGTTTATGTTGATGATATGATTGCAAAATCCAGAACGGAAGAG
22361511 GAGCATGTTCAAGTTCTGAGGAAATTGTTTTTGAGACTATGAAATTTCCAGCTCAAGCTTAATCC
66 GAGCATGTTCAAGTTCTGAGGAAATTGTTTTTGAGACTATGAAATTTCCAGCTCAAGCTTAATCC
22361576 AACAAAATGCACCTTTGGAGCCAGATCAGGAAAGTTACTAGGCTTCATATTCAGTGGGAAAAGAA
131 AACAAAATGCACCTTTGGAGCCAGATCAGGAAAGTTACTAGGCTTCATATTCAGTGGGAAAAGAA
22361641 TTGAGGTTGACCTAGACAAATTCAGGGTAATACGAGATTTGCCTCTACCACGCACTCAGAAAGAA
196 TTGAGGTTGACCTAGACAAATTCAGGGTAATACGAGATTTGCCTCTACCACGCACTCAGAAAGAA
22361706 GTACGGGGTTTTCTGAGAAGATTGAATTACATTGCTCGGTTTATTTCACA
261 GTACGGGGTTTTCTGAGAAGATTGAATTACATTGCTCGGTTTATTTCACA
22361756 AC
1 AC
22361758 TAACTAAGAA
Statistics
Matches: 312, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
310 312 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (310 bp):
ACATGATGCACAAAGAGATTGAGGTTTATGTTGATGATATGATTGCAAAATCCAGAACGGAAGAG
GAGCATGTTCAAGTTCTGAGGAAATTGTTTTTGAGACTATGAAATTTCCAGCTCAAGCTTAATCC
AACAAAATGCACCTTTGGAGCCAGATCAGGAAAGTTACTAGGCTTCATATTCAGTGGGAAAAGAA
TTGAGGTTGACCTAGACAAATTCAGGGTAATACGAGATTTGCCTCTACCACGCACTCAGAAAGAA
GTACGGGGTTTTCTGAGAAGATTGAATTACATTGCTCGGTTTATTTCACA
Found at i:22365444 original size:87 final size:88
Alignment explanation
Indices: 22365297--22365465 Score: 250
Period size: 87 Copynumber: 1.9 Consensus size: 88
22365287 GAAACCATAA
* * *
22365297 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAAATCTTGCCTTCCTGTACTGG
**
22365362 CAGCGAAGTAGATCGAATATACC
66 CAGCGAAACAGATCGAATATACC
* * *
22365385 AGCCTTGTCTCCCT-AGCAGTAGTGGAGTAGGTTGAAAATAGCAAATCTTGCCTTCCTGTACTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAAATCTTGCCTTCCTGTACTGG
*
22365449 TAGCGAAACAGATCGAA
66 CAGCGAAACAGATCGAA
22365466 GACACCCGTC
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
87 59 0.82
88 13 0.18
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (88 bp):
AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAAATCTTGCCTTCCTGTACTGG
CAGCGAAACAGATCGAATATACC
Found at i:22365663 original size:50 final size:49
Alignment explanation
Indices: 22365609--22365771 Score: 146
Period size: 50 Copynumber: 3.3 Consensus size: 49
22365599 ATTACAGTTA
*
22365609 AACAGATTGAAACCACAACGGCGAATCTTACTTCTCTGGCGGTGTAGTGG
1 AACAGATTGAAGCCACAACGGCGAATCTTACTTC-CTGGCGGTGTAGTGG
* * ** *** ** * * **
22365659 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTGCAATTA
1 AACAGATTGAAGCCACAACGGCGAATCTTACTT-CCTGGCGGTGTAGTGG
* *
22365709 AATAGATTGAAGCCACAACGACGAATCTTACTTCCTTGGCGGTGTAGTGG
1 AACAGATTGAAGCCACAACGGCGAATCTTACTTCC-TGGCGGTGTAGTGG
*
22365759 AATAGATTGAAGC
1 AACAGATTGAAGC
22365772 TACGAAGGTG
Statistics
Matches: 82, Mismatches: 29, Indels: 4
0.71 0.25 0.03
Matches are distributed among these distances:
49 2 0.02
50 79 0.96
51 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (49 bp):
AACAGATTGAAGCCACAACGGCGAATCTTACTTCCTGGCGGTGTAGTGG
Found at i:22365755 original size:100 final size:100
Alignment explanation
Indices: 22365606--22365820 Score: 324
Period size: 100 Copynumber: 2.1 Consensus size: 100
22365596 GGCATTACAG
* *
22365606 TTAAACAGATTGAAACCACAACGGCGAATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAG
1 TTAAACAGATTGAAGCCACAACGACGAATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAG
*
22365671 CTACGACGGCGAATCTTGTTTCCCCAACATTGCAA
66 CTACGAAGGCGAATCTTGTTTCCCCAACATTGCAA
* *
22365706 TTAAATAGATTGAAGCCACAACGACGAATCTTACTTC-CTTGGCGGTGTAGTGGAATAGATTGAA
1 TTAAACAGATTGAAGCCACAACGACGAATCTTACTTCTC-TGGCGGTGTAGTGGAACAGATTGAA
* * * *
22365770 GCTACGAAGGTGAATCTTTTTTCCCCGACATTGCAG
65 GCTACGAAGGCGAATCTTGTTTCCCCAACATTGCAA
*
22365806 TTAAACAGACTGAAG
1 TTAAACAGATTGAAG
22365821 ATCGCATCCA
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 1 0.01
100 102 0.99
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (100 bp):
TTAAACAGATTGAAGCCACAACGACGAATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAG
CTACGAAGGCGAATCTTGTTTCCCCAACATTGCAA
Found at i:22366839 original size:87 final size:88
Alignment explanation
Indices: 22366692--22366860 Score: 250
Period size: 87 Copynumber: 1.9 Consensus size: 88
22366682 GAAACCATAA
* * *
22366692 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAAATCTTGCCTTCCTGTACTGG
**
22366757 CAGCGAAGTAGATCGAATATACC
66 CAGCGAAACAGATCGAATATACC
* * *
22366780 AGCCTTGTCTCCCT-AGCAGTAGTGGAGTAGGTTGAAAATAGCAAATCTTGCCTTCCTGTACTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAAATCTTGCCTTCCTGTACTGG
*
22366844 TAGCGAAACAGATCGAA
66 CAGCGAAACAGATCGAA
22366861 GACACCCGTC
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
87 59 0.82
88 13 0.18
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (88 bp):
AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAAATCTTGCCTTCCTGTACTGG
CAGCGAAACAGATCGAATATACC
Found at i:22367058 original size:50 final size:49
Alignment explanation
Indices: 22367004--22367166 Score: 146
Period size: 50 Copynumber: 3.3 Consensus size: 49
22366994 ATTACAGTTA
*
22367004 AACAGATTGAAACCACAACGGCGAATCTTACTTCTCTGGCGGTGTAGTGG
1 AACAGATTGAAGCCACAACGGCGAATCTTACTTC-CTGGCGGTGTAGTGG
* * ** *** ** * * **
22367054 AACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTGCAATTA
1 AACAGATTGAAGCCACAACGGCGAATCTTACTT-CCTGGCGGTGTAGTGG
* *
22367104 AATAGATTGAAGCCACAACGACGAATCTTACTTCCTTGGCGGTGTAGTGG
1 AACAGATTGAAGCCACAACGGCGAATCTTACTTCC-TGGCGGTGTAGTGG
*
22367154 AATAGATTGAAGC
1 AACAGATTGAAGC
22367167 TACGAAGGTG
Statistics
Matches: 82, Mismatches: 29, Indels: 4
0.71 0.25 0.03
Matches are distributed among these distances:
49 2 0.02
50 79 0.96
51 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (49 bp):
AACAGATTGAAGCCACAACGGCGAATCTTACTTCCTGGCGGTGTAGTGG
Found at i:22367150 original size:100 final size:100
Alignment explanation
Indices: 22367001--22367215 Score: 324
Period size: 100 Copynumber: 2.1 Consensus size: 100
22366991 GGCATTACAG
* *
22367001 TTAAACAGATTGAAACCACAACGGCGAATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAG
1 TTAAACAGATTGAAGCCACAACGACGAATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAG
*
22367066 CTACGACGGCGAATCTTGTTTCCCCAACATTGCAA
66 CTACGAAGGCGAATCTTGTTTCCCCAACATTGCAA
* *
22367101 TTAAATAGATTGAAGCCACAACGACGAATCTTACTTC-CTTGGCGGTGTAGTGGAATAGATTGAA
1 TTAAACAGATTGAAGCCACAACGACGAATCTTACTTCTC-TGGCGGTGTAGTGGAACAGATTGAA
* * * *
22367165 GCTACGAAGGTGAATCTTTTTTCCCCGACATTGCAG
65 GCTACGAAGGCGAATCTTGTTTCCCCAACATTGCAA
*
22367201 TTAAACAGACTGAAG
1 TTAAACAGATTGAAG
22367216 ATCGCATCCA
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 1 0.01
100 102 0.99
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (100 bp):
TTAAACAGATTGAAGCCACAACGACGAATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAG
CTACGAAGGCGAATCTTGTTTCCCCAACATTGCAA
Found at i:22367377 original size:85 final size:85
Alignment explanation
Indices: 22367267--22367424 Score: 228
Period size: 85 Copynumber: 1.9 Consensus size: 85
22367257 ACAGAAGAAA
* * * *
22367267 CTAATCCTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTAT-CTCTCTGAAG
1 CTAATCCTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAACCACAAATCCTATAC-CTCTGAAG
22367331 TTGCAGTAGAGCAAATCGTAT
65 TTGCAGTAGAGCAAATCGTAT
* ** *
22367352 CTAATCCTATCTCCCTGAAGCTGCAGTGGAGCGGATTAAAATGATAAATCCTATACCTCTGAAGT
1 CTAATCCTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAACCACAAATCCTATACCTCTGAAGT
22367417 TGCAGTAG
66 TGCAGTAG
22367425 GTCGGATTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 63 0.98
86 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (85 bp):
CTAATCCTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAACCACAAATCCTATACCTCTGAAGT
TGCAGTAGAGCAAATCGTAT
Found at i:22369480 original size:73 final size:71
Alignment explanation
Indices: 22369367--22369508 Score: 223
Period size: 73 Copynumber: 2.0 Consensus size: 71
22369357 TCTTTTCAAA
*
22369367 CTCAAGTTTTAAACAATCTCGGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACAATCTCAGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
22369432 ATTTTTC
66 -TTTTTC
* *
22369439 CTCAAGTTTTTAAACGATCTCAGGAATTAAGAAA-AGATCGTGTTCTAACTTACTGGGCATGATC
1 CTCAAG-TTTTAAACAATCTCAGGAATTAA-AAAGAGATCGTGTCCTAACTTACTGGGCATGATC
22369503 CCTTTT
64 CCTTTT
22369509 CTAAACCCGA
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
72 10 0.15
73 52 0.80
74 3 0.05
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (71 bp):
CTCAAGTTTTAAACAATCTCAGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
TTTTTC
Found at i:22372268 original size:18 final size:19
Alignment explanation
Indices: 22372232--22372269 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
22372222 TTAAAGCTTT
*
22372232 ATTTTAATATTTTTTATAC
1 ATTTTAATATTTATTATAC
22372251 ATTTTAAT-TTTATTATAC
1 ATTTTAATATTTATTATAC
22372269 A
1 A
22372270 CATTTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTAATATTTATTATAC
Found at i:22372274 original size:20 final size:19
Alignment explanation
Indices: 22372232--22372276 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
22372222 TTAAAGCTTT
*
22372232 ATTTTAATATTTTTTATAC
1 ATTTTAATATTTTTTACAC
22372251 ATTTTAAT-TTTATTATACAC
1 ATTTTAATATTT-TT-TACAC
22372271 ATTTTA
1 ATTTTA
22372277 TTACCTTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 3 0.13
19 10 0.43
20 10 0.43
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTAATATTTTTTACAC
Found at i:22374745 original size:933 final size:933
Alignment explanation
Indices: 22372939--22374805 Score: 3734
Period size: 933 Copynumber: 2.0 Consensus size: 933
22372929 ATATAAAAAA
22372939 TAACATATTATAAAATTTGAAAATAAATAAGGTTCAAGCCTTAAATATTTGAGCTGAAGCCAAAT
1 TAACATATTATAAAATTTGAAAATAAATAAGGTTCAAGCCTTAAATATTTGAGCTGAAGCCAAAT
22373004 TGATATTTAAACAAGTTTATTTTTGCTTAAACTCGTTTTTCATAATTTCGTTCAAACCCTCTCAA
66 TGATATTTAAACAAGTTTATTTTTGCTTAAACTCGTTTTTCATAATTTCGTTCAAACCCTCTCAA
22373069 ATTTAAAACACGTCTTAAAATTTGAATAATTAACTCAACCTTTAAACAACATGTGAGTAAACGTG
131 ATTTAAAACACGTCTTAAAATTTGAATAATTAACTCAACCTTTAAACAACATGTGAGTAAACGTG
22373134 GGATGGTAATCATATCAGGTTGTCATTTGAAAGCCGAACTTGAAATATACAAATTCTTCATTCAA
196 GGATGGTAATCATATCAGGTTGTCATTTGAAAGCCGAACTTGAAATATACAAATTCTTCATTCAA
22373199 ACAAACCGCTGGATACCTCGAACCAAATTTAGATAAGAGAAGAAATTACAGGTGTTATTAACTCG
261 ACAAACCGCTGGATACCTCGAACCAAATTTAGATAAGAGAAGAAATTACAGGTGTTATTAACTCG
22373264 AGATCCAACATTCTAAACCTAAACCCTAAATCCAAAAAAACAAGTTACAACAAACAAGGGAACAT
326 AGATCCAACATTCTAAACCTAAACCCTAAATCCAAAAAAACAAGTTACAACAAACAAGGGAACAT
22373329 AAATCAGAACTCTAAGAAGACCTCTCGGAATGATGATGACGAGGACGGAGCCTGAGAACAAATCT
391 AAATCAGAACTCTAAGAAGACCTCTCGGAATGATGATGACGAGGACGGAGCCTGAGAACAAATCT
22373394 GAGGAACGTACGCGTTGTCGTCATCGTGCATCGATACAGAAGCATTCAATCGTTTCTCTGATACC
456 GAGGAACGTACGCGTTGTCGTCATCGTGCATCGATACAGAAGCATTCAATCGTTTCTCTGATACC
22373459 AACGGCAATTCTTGACCCAAAGCAATATCTCCTCCATGAAACACTCTGTGATCAATGTATTCAAG
521 AACGGCAATTCTTGACCCAAAGCAATATCTCCTCCATGAAACACTCTGTGATCAATGTATTCAAG
22373524 CATGTCTCTGACGTTGAAATCGATGGTGATCGTTCCGTCACATTCCATTTGATTGTCAAGCTGTT
586 CATGTCTCTGACGTTGAAATCGATGGTGATCGTTCCGTCACATTCCATTTGATTGTCAAGCTGTT
22373589 CGTTTTCCAGGGGAATGGTCATATGATAATTATGAGAAGGAAACTGATGATATTCATTGCCTTGT
651 CGTTTTCCAGGGGAATGGTCATATGATAATTATGAGAAGGAAACTGATGATATTCATTGCCTTGT
22373654 TGAATGGTGTAATTGTTTAGTATCATCTCTTGACCTTGTAAGCACCCACGTTGAAATGGAGGGGA
716 TGAATGGTGTAATTGTTTAGTATCATCTCTTGACCTTGTAAGCACCCACGTTGAAATGGAGGGGA
22373719 ACAACTTGAACTTCTATCATAGTTTCTTCCACTTGTAATTTGTTGGGGAACCTTGATTTTATGGT
781 ACAACTTGAACTTCTATCATAGTTTCTTCCACTTGTAATTTGTTGGGGAACCTTGATTTTATGGT
22373784 GGACTCGACATAGAACCCAATCGTCCAACTAAAAATAACAAGATAAATAGAAATGAATTGAGTTA
846 GGACTCGACATAGAACCCAATCGTCCAACTAAAAATAACAAGATAAATAGAAATGAATTGAGTTA
22373849 GTAAATCATATCGTGATATTAGT
911 GTAAATCATATCGTGATATTAGT
22373872 TAACATATTATAAAATTTGAAAATAAATAAGGTTCAAGCCTTAAATATTTGAGCTGAAGCCAAAT
1 TAACATATTATAAAATTTGAAAATAAATAAGGTTCAAGCCTTAAATATTTGAGCTGAAGCCAAAT
22373937 TGATATTTAAACAAGTTTATTTTTGCTTAAACTCGTTTTTCATAATTTCGTTCAAACCCTCTCAA
66 TGATATTTAAACAAGTTTATTTTTGCTTAAACTCGTTTTTCATAATTTCGTTCAAACCCTCTCAA
22374002 ATTTAAAACACGTCTTAAAATTTGAATAATTAACTCAACCTTTAAACAACATGTGAGTAAACGTG
131 ATTTAAAACACGTCTTAAAATTTGAATAATTAACTCAACCTTTAAACAACATGTGAGTAAACGTG
22374067 GGATGGTAATCATATCAGGTTGTCATTTGAAAGCCGAACTTGAAATATACAAATTCTTCATTCAA
196 GGATGGTAATCATATCAGGTTGTCATTTGAAAGCCGAACTTGAAATATACAAATTCTTCATTCAA
22374132 ACAAACCGCTGGATACCTCGAACCAAATTTAGATAAGAGAAGAAATTACAGGTGTTATTAACTCG
261 ACAAACCGCTGGATACCTCGAACCAAATTTAGATAAGAGAAGAAATTACAGGTGTTATTAACTCG
22374197 AGATCCAACATTCTAAACCTAAACCCTAAATCCAAAAAAACAAGTTACAACAAACAAGGGAACAT
326 AGATCCAACATTCTAAACCTAAACCCTAAATCCAAAAAAACAAGTTACAACAAACAAGGGAACAT
22374262 AAATCAGAACTCTAAGAAGACCTCTCGGAATGATGATGACGAGGACGGAGCCTGAGAACAAATCT
391 AAATCAGAACTCTAAGAAGACCTCTCGGAATGATGATGACGAGGACGGAGCCTGAGAACAAATCT
22374327 GAGGAACGTACGCGTTGTCGTCATCGTGCATCGATACAGAAGCATTCAATCGTTTCTCTGATACC
456 GAGGAACGTACGCGTTGTCGTCATCGTGCATCGATACAGAAGCATTCAATCGTTTCTCTGATACC
22374392 AACGGCAATTCTTGACCCAAAGCAATATCTCCTCCATGAAACACTCTGTGATCAATGTATTCAAG
521 AACGGCAATTCTTGACCCAAAGCAATATCTCCTCCATGAAACACTCTGTGATCAATGTATTCAAG
22374457 CATGTCTCTGACGTTGAAATCGATGGTGATCGTTCCGTCACATTCCATTTGATTGTCAAGCTGTT
586 CATGTCTCTGACGTTGAAATCGATGGTGATCGTTCCGTCACATTCCATTTGATTGTCAAGCTGTT
22374522 CGTTTTCCAGGGGAATGGTCATATGATAATTATGAGAAGGAAACTGATGATATTCATTGCCTTGT
651 CGTTTTCCAGGGGAATGGTCATATGATAATTATGAGAAGGAAACTGATGATATTCATTGCCTTGT
22374587 TGAATGGTGTAATTGTTTAGTATCATCTCTTGACCTTGTAAGCACCCACGTTGAAATGGAGGGGA
716 TGAATGGTGTAATTGTTTAGTATCATCTCTTGACCTTGTAAGCACCCACGTTGAAATGGAGGGGA
22374652 ACAACTTGAACTTCTATCATAGTTTCTTCCACTTGTAATTTGTTGGGGAACCTTGATTTTATGGT
781 ACAACTTGAACTTCTATCATAGTTTCTTCCACTTGTAATTTGTTGGGGAACCTTGATTTTATGGT
22374717 GGACTCGACATAGAACCCAATCGTCCAACTAAAAATAACAAGATAAATAGAAATGAATTGAGTTA
846 GGACTCGACATAGAACCCAATCGTCCAACTAAAAATAACAAGATAAATAGAAATGAATTGAGTTA
22374782 GTAAATCATATCGTGATATTAGT
911 GTAAATCATATCGTGATATTAGT
22374805 T
1 T
22374806 TTGAGACTAT
Statistics
Matches: 934, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
933 934 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (933 bp):
TAACATATTATAAAATTTGAAAATAAATAAGGTTCAAGCCTTAAATATTTGAGCTGAAGCCAAAT
TGATATTTAAACAAGTTTATTTTTGCTTAAACTCGTTTTTCATAATTTCGTTCAAACCCTCTCAA
ATTTAAAACACGTCTTAAAATTTGAATAATTAACTCAACCTTTAAACAACATGTGAGTAAACGTG
GGATGGTAATCATATCAGGTTGTCATTTGAAAGCCGAACTTGAAATATACAAATTCTTCATTCAA
ACAAACCGCTGGATACCTCGAACCAAATTTAGATAAGAGAAGAAATTACAGGTGTTATTAACTCG
AGATCCAACATTCTAAACCTAAACCCTAAATCCAAAAAAACAAGTTACAACAAACAAGGGAACAT
AAATCAGAACTCTAAGAAGACCTCTCGGAATGATGATGACGAGGACGGAGCCTGAGAACAAATCT
GAGGAACGTACGCGTTGTCGTCATCGTGCATCGATACAGAAGCATTCAATCGTTTCTCTGATACC
AACGGCAATTCTTGACCCAAAGCAATATCTCCTCCATGAAACACTCTGTGATCAATGTATTCAAG
CATGTCTCTGACGTTGAAATCGATGGTGATCGTTCCGTCACATTCCATTTGATTGTCAAGCTGTT
CGTTTTCCAGGGGAATGGTCATATGATAATTATGAGAAGGAAACTGATGATATTCATTGCCTTGT
TGAATGGTGTAATTGTTTAGTATCATCTCTTGACCTTGTAAGCACCCACGTTGAAATGGAGGGGA
ACAACTTGAACTTCTATCATAGTTTCTTCCACTTGTAATTTGTTGGGGAACCTTGATTTTATGGT
GGACTCGACATAGAACCCAATCGTCCAACTAAAAATAACAAGATAAATAGAAATGAATTGAGTTA
GTAAATCATATCGTGATATTAGT
Found at i:22385068 original size:3 final size:3
Alignment explanation
Indices: 22385060--22385093 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
22385050 TTCGATCTAA
22385060 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
22385094 TTTATGTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:22387591 original size:37 final size:37
Alignment explanation
Indices: 22387505--22387959 Score: 885
Period size: 37 Copynumber: 12.3 Consensus size: 37
22387495 GGTAGCTTTA
* *
22387505 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT-
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387541 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387578 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387615 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387652 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387689 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387726 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387763 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387800 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387837 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387874 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387911 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
22387948 GCTACACTTATC
1 GCTACACTTATC
22387960 AATTATTTTG
Statistics
Matches: 416, Mismatches: 2, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
36 34 0.08
37 382 0.92
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:22405252 original size:317 final size:317
Alignment explanation
Indices: 22404620--22405297 Score: 879
Period size: 317 Copynumber: 2.1 Consensus size: 317
22404610 CAACGGTTTT
* *
22404620 CTAATAGGG-AGGCTTTATGCTTATTGGATAATTGTGGCATTGCCGATGTTGTCCATTTAGGTTG
1 CTAATAGGGCA-GCTTTATGCTTATTCGATAATTGTGGCATTGCCGATGTTGTCCATTTAGGTTC
* **
22404684 TTACATTTTATTAAAGAGAGAACATATATTCAGTAATGGAGTCCTTCTGTGGTGGGGGAAGGGCA
65 TTACATTTTATTAAAGAAAGAACATATATTCAGTAATGGAGTCCTTCCATGGTGGGGGAAGGGCA
* * * *
22404749 AGGGCAGTCTACTCGTTGTCAGGTTGCAATAAGAAATGGAAACTAGTCATTGGAGGGAACACAAG
130 AGGGCAGTCTACTCCTTGTCAGGTTGAAACAAGAAACGGAAACTAGTCATTGGAGGGAACACAAG
* * * **
22404814 GCTAGAGGAGAGTGGCTCTGCATAAGAGCCTTACTCTATAGGGTCATTAGAGTGCAGCGGCTAGC
195 GCTAGAGGAGAGTGGCTCCGCATAAGAGCCTTACTCTACAGGGACATTAGAGTGCAGCAACTAGC
* *
22404879 ACTTTGAAGCCCGCTGAAAAACCGATGTGCTCTACTAGCGCAATGGTTTGAAGCTTTG
260 ACTTTGAAGCCAGCTGAAAAACCGATGTGCTCTACTAGCGCAATGGTTTCAAGCTTTG
* * * * * *
22404937 CTGATAGGGCAGCTTAATGCTTATTCAATAATTGTGGTATTGCTGGGAT-TT-TCTATTTAGGTT
1 CTAATAGGGCAGCTTTATGCTTATTCGATAATTGTGGCATTGC--CGATGTTGTCCATTTAGGTT
22405000 CTTACATTTTATTAAAGAAAGAACATATATTCAGTAATGGAGTCCTTCCATGGTGGGGGAAGGGC
64 CTTACATTTTATTAAAGAAAGAACATATATTCAGTAATGGAGTCCTTCCATGGTGGGGGAAGGGC
** * *
22405065 AAGGGCAG-C-A-TCCTTGTTGGGTTGAAACAAGAAACGGAAACTAGTCGTTGGAGGGAACACGA
129 AAGGGCAGTCTACTCCTTGTCAGGTTGAAACAAGAAACGGAAACTAGTCATTGGAGGGAACACAA
* * * * *
22405127 GGCTTGTGGA-ATGTGGTTCCGCATAAGAGCCTTACTCTACAGGGACGTTAGTGTGCTA-CAACT
194 GGCTAGAGGAGA-GTGGCTCCGCATAAGAGCCTTACTCTACAGGGACATTAGAGTGC-AGCAACT
* * **
22405190 AGCACTTTGAAGCCAGCTGAAAAACTGATGCTTGCTATTGGT-GCGCAATGGTTTTCAAGCTTTG
257 AGCACTTTGAAGCCAGCTGAAAAACCGATG--TGCT-CTACTAGCGCAATGG-TTTCAAGCTTTG
* *
22405254 CTAATAGGGCAGCTTTATGCTTATTTGATAATTGTGCCATTGCC
1 CTAATAGGGCAGCTTTATGCTTATTCGATAATTGTGGCATTGCC
22405298 AGCATTTTCC
Statistics
Matches: 310, Mismatches: 42, Indels: 20
0.83 0.11 0.05
Matches are distributed among these distances:
313 1 0.00
314 121 0.39
315 2 0.01
316 14 0.05
317 166 0.54
318 3 0.01
319 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (317 bp):
CTAATAGGGCAGCTTTATGCTTATTCGATAATTGTGGCATTGCCGATGTTGTCCATTTAGGTTCT
TACATTTTATTAAAGAAAGAACATATATTCAGTAATGGAGTCCTTCCATGGTGGGGGAAGGGCAA
GGGCAGTCTACTCCTTGTCAGGTTGAAACAAGAAACGGAAACTAGTCATTGGAGGGAACACAAGG
CTAGAGGAGAGTGGCTCCGCATAAGAGCCTTACTCTACAGGGACATTAGAGTGCAGCAACTAGCA
CTTTGAAGCCAGCTGAAAAACCGATGTGCTCTACTAGCGCAATGGTTTCAAGCTTTG
Found at i:22406927 original size:15 final size:14
Alignment explanation
Indices: 22406903--22406950 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
22406893 TAAGTTATGG
*
22406903 ATTTAATTTTTTAT
1 ATTTTATTTTTTAT
*
22406917 ATTTTATTTTTATCT
1 ATTTTATTTTT-TAT
*
22406932 ATTTTAGTTTTTAT
1 ATTTTATTTTTTAT
22406946 ATTTT
1 ATTTT
22406951 TTGAATTGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (14 bp):
ATTTTATTTTTTAT
Found at i:22406951 original size:15 final size:14
Alignment explanation
Indices: 22406910--22406951 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
22406900 TGGATTTAAT
22406910 TTTTTATA-TTTTA
1 TTTTTATATTTTTA
*
22406923 TTTTTATCTATTTTA
1 TTTTTATAT-TTTTA
22406938 GTTTTTATATTTTT
1 -TTTTTATATTTTT
22406952 TGAATTGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 7 0.29
15 9 0.38
16 8 0.33
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTTTATATTTTTA
Found at i:22416052 original size:19 final size:19
Alignment explanation
Indices: 22416030--22416068 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
22416020 TTTTTACGTA
*
22416030 TTTTAAAAATTTATAGATT
1 TTTTAAAAATCTATAGATT
* *
22416049 TTTTTAGAATCTATAGATT
1 TTTTAAAAATCTATAGATT
22416068 T
1 T
22416069 GACTTTTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54
Consensus pattern (19 bp):
TTTTAAAAATCTATAGATT
Found at i:22420841 original size:112 final size:112
Alignment explanation
Indices: 22418728--22420827 Score: 4164
Period size: 112 Copynumber: 18.8 Consensus size: 112
22418718 GAAATTCGAG
* * * *
22418728 AGGATATTTCGCTATTCGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22418793 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22418840 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22418905 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22418952 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419017 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419064 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419129 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419176 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419241 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419288 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419353 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419400 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419465 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419512 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419577 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419624 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419689 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419736 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419801 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419848 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22419913 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22419960 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22420025 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22420072 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22420137 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22420184 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22420249 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22420296 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22420361 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22420408 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22420473 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22420520 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22420585 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22420632 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22420697 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
66 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
22420744 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
22420809 GAATTTCCCAAATGCAAAA
66 GAATTTCCCAAATGCAAAA
22420828 TTATTATTTA
Statistics
Matches: 1984, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 1984 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (112 bp):
AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAAATTTTTAAA
Found at i:22421971 original size:129 final size:129
Alignment explanation
Indices: 22421785--22422023 Score: 275
Period size: 129 Copynumber: 1.9 Consensus size: 129
22421775 TATCTTCAAC
* * ***
22421785 CTGCTCCACTGCGACTTCAGGGAGATAAGGTTTGATCCAATTCGACCTACTGCAACTTCAGAG-G
1 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATCCAATTCGACCTACTGCAACTTCAGAGAG
* * * *
22421849 TATATGATTCATCGTTTTCATCCACTCCACTGCAACTTCAGGGAGACACGATTGGTATTTTTCGT
66 -ATAAGATCCATCATTTTAATCCACTCCACTGCAACTTCAGGGAGACACGATTGGTATTTTTCGT
* * * * * *
22421914 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGA-TCTACTCTGCTGTAACTTTAGAGA
1 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATCCAATTCGAC-CTACTGCAACTTCAGAGA
* * * *
22421978 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGA
65 GATAAGATCCATCATTTTAATCCACTCCACTGCAACTTCAGGGAGA
22422024 TAGGATTGTC
Statistics
Matches: 89, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
128 4 0.04
129 84 0.94
130 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (129 bp):
CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATCCAATTCGACCTACTGCAACTTCAGAGAG
ATAAGATCCATCATTTTAATCCACTCCACTGCAACTTCAGGGAGACACGATTGGTATTTTTCGT
Found at i:22422060 original size:41 final size:43
Alignment explanation
Indices: 22421996--22422527 Score: 223
Period size: 44 Copynumber: 12.3 Consensus size: 43
22421986 CCTTTATTTT
* * *
22421996 AATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-T-TGTCTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACTCTGGCTTC
* * *
22422037 GATTTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CTCTGGCTTC
* * *
22422081 AATCTGCTCCACTGTAATCTTAGGGAGATAATA-TCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG----GCTTC
** * * ** *
22422127 GGTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CT-AATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* * * ** *** *
22422168 GATCTACTCTGA-TGTAA-CTTCAGAAAGATAAGA-TCCTTTATTTT
1 AATCTGCTC-CACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * *
22422212 AATCCGCTCCACTGTAATCTCAGGGAGATAGGA-TAGTGTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
* * * *
22422255 GATCTGCTCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CTCTGGCTTC
* * * * *
22422299 AATCTGCTCCACTATAACCTCAAGGAGATAAG-GTCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTG----GCTTC
** * * * *
22422345 GGTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
* * ** ** *** *
22422386 GATCTACTCTGCTGTAA-CTTCAGAAAGATAAGA-TCCTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACT-C-TGGCTTC
* * * *
22422430 AATCCGCTCCACTGTAATCTCAGGGAGATAGGA-TAGTGTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACT-CTGGCTTC
* *
22422473 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CTCTGGCTTC
22422517 AATCTGCTCCA
1 AATCTGCTCCA
22422528 NNNNNNNNNN
Statistics
Matches: 363, Mismatches: 96, Indels: 61
0.70 0.18 0.12
Matches are distributed among these distances:
40 2 0.01
41 81 0.22
42 12 0.03
43 66 0.18
44 132 0.36
45 4 0.01
46 66 0.18
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTCTGGCTTC
Found at i:22422358 original size:218 final size:218
Alignment explanation
Indices: 22421912--22422527 Score: 1067
Period size: 218 Copynumber: 2.8 Consensus size: 218
22421902 GGTATTTTTC
* * * *
22421912 GTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTTAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAA
22421977 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGAT--TGTCTTCGA
66 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATAGTGTCTTCGA
* * * * *
22422039 TTTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAATCTTAG
130 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAA
*
22422104 GGAGATAATATCTGAAATTCTTCG
195 GGAGATAAGATCTGAAATTCTTCG
* *
22422128 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTGATGTAACTTCAGAA
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAA
22422193 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGAT
66 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGAT
* *
22422258 CTGCTCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAAG
131 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAAG
*
22422323 GAGATAAGGTCTGAAATTCTTCG
196 GAGATAAGATCTGAAATTCTTCG
22422346 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAA
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAA
22422411 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGAT
66 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGAT
22422476 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
131 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
22422528 NNNNNNNNNN
Statistics
Matches: 378, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
216 110 0.29
217 1 0.00
218 267 0.71
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAA
AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGAT
CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAAG
GAGATAAGATCTGAAATTCTTCG
Found at i:22422526 original size:87 final size:87
Alignment explanation
Indices: 22421913--22422527 Score: 303
Period size: 87 Copynumber: 7.1 Consensus size: 87
22421903 GTATTTTTCG
* * * * * * ** *
22421913 TCTGCTCCACTGCAACCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAA-CTTTAG
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAATC-TCAG
* * * *
22421975 AGAGATAAGATC-CTTTATTTTAA
65 GGAGATAAGATCTC-TGACTTCAA
* * * *
22421998 TCCGCTCCACTGTAA-CTTCAGGGAGATAGGAT--TGTCTTCGATTTGCTCCGCTGTAATCTCAG
1 TCTGCTCCACTGTAATC-TCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAATCTCAG
*
22422060 GGAGATAAGATCTCTGGCTTCAA
65 GGAGATAAGATCTCTGACTTCAA
* * * * *
22422083 TCTGCTCCACTGTAATCTTAGGGAGATAATAT-CTGAAATTCTTCGGTCTACTCCACTGTAACCT
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATACTG----TCTTCGATCTGCTCCACTGTAATCT
* * *
22422147 CAGGGAGATAAGA-C-CT-AATGCGA
62 CAGGGAGATAAGATCTCTGACTTCAA
* * ** * * * ** *
22422170 TCTACTCTGA-TGTAA-CTTCAGAAAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 TCTGCTC-CACTGTAATC-TCAGGGAGATAAGATACTGT-CTTCGATCTGCTCCACTGTAATCTC
* ** * *
22422233 AGGGAGATAGGAT-AGTGTCTTCGA
63 AGGGAGATAAGATCTCTGACTTCAA
* * * * * * * * *
22422257 TCTGCTCCGCTGTAATCTCAAGAAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAACCTCAA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGAT-ACTGTCTTCGATCTGCTCCACTGTAATCTCAG
* *** **
22422322 GGAGATAAGGTCTGAAATTCTTCGG
65 GGAGATAAGATCTCTGA--CTTCAA
* * * * * * **
22422347 TCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAA-CTTCAG
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAATC-TCAG
** * * *
22422409 AAAGATAAGATC-CTTTATTTTAA
65 GGAGATAAGATCTC-TGACTTCAA
* * * *
22422432 TCCGCTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGG
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAATCTCAGG
*
22422497 GAGATAAGATCTCTGGCTTCAA
66 GAGATAAGATCTCTGACTTCAA
22422519 TCTGCTCCA
1 TCTGCTCCA
22422528 NNNNNNNNNN
Statistics
Matches: 392, Mismatches: 108, Indels: 58
0.70 0.19 0.10
Matches are distributed among these distances:
84 4 0.01
85 145 0.37
86 10 0.03
87 154 0.39
88 14 0.04
89 1 0.00
90 64 0.16
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (87 bp):
TCTGCTCCACTGTAATCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAATCTCAGG
GAGATAAGATCTCTGACTTCAA
Found at i:22423379 original size:44 final size:43
Alignment explanation
Indices: 22423316--22423830 Score: 272
Period size: 44 Copynumber: 11.7 Consensus size: 43
22423306 NNNNNNNNNN
*
22423316 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT-GCTTCA
* * * *
22423360 ATCTGCTCCACTATAATCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * * * *
22423406 GTGTACTCCACTGTAACCTCGGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTGCTTCA
** ** * * ** *
22423447 ATCAACTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTCTGCTTCA
* * * *
22423491 ATCCGCTCTACTGTAATCTCGGGGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT-CT-GCTTCA
* * * *
22423535 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT---CTGCTTCA
* * * * * * * *
22423581 GTGTACTCCACTGTAACCTCGGGGAGATAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTGCTTCA
** ** * * ** *
22423622 ATCAACTCTGCTGTAA-CTTCAGTGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTCTGCTTCA
* * * *
22423666 ATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TGTGTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTG-CTTCA
*
22423709 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT-GCTTCA
* * * * *
22423753 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCT
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT---CTGCTTCA
* * *
22423799 GTCTACTCCACTGTAACCTCAGGGAGATAAGA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA
22423831 CCTGATGCGA
Statistics
Matches: 355, Mismatches: 92, Indels: 46
0.72 0.19 0.09
Matches are distributed among these distances:
40 2 0.01
41 54 0.15
42 3 0.01
43 35 0.10
44 156 0.44
45 6 0.02
46 95 0.27
47 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (43 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTGCTTCA
Found at i:22423617 original size:175 final size:173
Alignment explanation
Indices: 22423320--22423743 Score: 722
Period size: 175 Copynumber: 2.4 Consensus size: 173
22423310 NNNNNNATCT
* * * *
22423320 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGAT-TCT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGA
22423385 GATAAGATCTGAAATTCTTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGACCTGATGCGATC
64 GATAAGATCTGAAATTCTTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGACCTGATGCGATC
22423450 AACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCC
129 AACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCC
* *
22423495 GCTCTACTGTAATCTCGGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGATT-CT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGA
22423560 GATAAGATCTGAAATTCTTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGACCTGATGCGATC
64 GATAAGATCTGAAATTCTTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGACCTGATGCGATC
*
22423625 AACTCTGCTGTAACTTCAGTGAGATAAGATCCTTTATTTTAATCC
129 AACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCC
* *
22423670 GCTCCACTGTAATCTCAGGGAGATAGGATTGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAG
1 GCTCCACTGTAATCTCAGGGAGATAGGATTCTG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAG
22423735 ATAAGATCT
65 ATAAGATCT
22423744 CTGGCTTCAA
Statistics
Matches: 235, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
173 1 0.00
174 41 0.17
175 193 0.82
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (173 bp):
GCTCCACTGTAATCTCAGGGAGATAGGATTCTGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCTGAAATTCTTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGACCTGATGCGATCAA
CTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCC
Found at i:22423722 original size:87 final size:86
Alignment explanation
Indices: 22423320--22423742 Score: 309
Period size: 87 Copynumber: 4.8 Consensus size: 86
22423310 NNNNNNATCT
* * * * * *
22423320 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAATCTCAGGGA
1 GCTCCACTGTAATCTCGGGGAGATAGGAT-TCT-GCTTCGATCTGCTCCGCTGTAATCTCAGGGA
** ** **
22423385 GATAAGAT-CTGAAATTCTTCGGTGT
64 GATAAGATCCT-TTATT-TT-AATCC
* * * * * * ** * *
22423410 ACTCCACTGTAACCTCGGGGAGATAAGA-CCTGATGCGATCAACTCTGCTGTAA-CTTCAGAGAG
1 GCTCCACTGTAATCTCGGGGAGATAGGATTCTGCTTCGATCTGCTCCGCTGTAATC-TCAGGGAG
22423473 ATAAGATCCTTTATTTTAATCC
65 ATAAGATCCTTTATTTTAATCC
* *
22423495 GCTCTACTGTAATCTCGGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCGGGGAGATAGGATT-CT-GCTTCGATCTGCTCCGCTGTAATCTCAGGGA
** ** **
22423560 GATAAGAT-CTGAAATTCTTCGGTGT
64 GATAAGATCCT-TTATT-TT-AATCC
* * * * * * ** * *
22423585 ACTCCACTGTAACCTCGGGGAGATAAGA-CCTGATGCGATCAACTCTGCTGTAA-CTTCAGTGAG
1 GCTCCACTGTAATCTCGGGGAGATAGGATTCTGCTTCGATCTGCTCCGCTGTAATC-TCAGGGAG
22423648 ATAAGATCCTTTATTTTAATCC
65 ATAAGATCCTTTATTTTAATCC
* *
22423670 GCTCCACTGTAATCTCAGGGAGATAGGATTGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAG
1 GCTCCACTGTAATCTCGGGGAGATAGGATTCTG-CTTCGATCTGCTCCGCTGTAATCTCAGGGAG
22423735 ATAAGATC
65 ATAAGATC
22423743 TCTGGCTTCA
Statistics
Matches: 251, Mismatches: 68, Indels: 31
0.72 0.19 0.09
Matches are distributed among these distances:
85 50 0.20
86 8 0.03
87 99 0.39
88 42 0.17
89 3 0.01
90 49 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (86 bp):
GCTCCACTGTAATCTCGGGGAGATAGGATTCTGCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCCTTTATTTTAATCC
Found at i:22423842 original size:131 final size:130
Alignment explanation
Indices: 22423316--22423843 Score: 383
Period size: 131 Copynumber: 4.0 Consensus size: 130
22423306 NNNNNNNNNN
* * *
22423316 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTATAATCTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC-CTGGCTTCAATCTACTCCACTGTAACCTCA
** * *
22423381 GGGAGATAAGATCTGAAATTCTTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGACCTG-ATG
65 GGGAGATAAGATCT-AAATTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAATG
22423445 CG
129 CG
** * * *** * ** * *
22423447 ATCAACTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTGTAATCTC
1 ATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCC-TGGCTTCAATCTACTCCACTGTAACCTC
* * * * * * * *
22423511 GGGGAGATAGGAT-T-ACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA
64 AGGGAGATAAGATCTAAAT-TCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-AA
*
22423574 TTC-
127 TGCG
* * * * * * * * ** *
22423577 TTCGGTGTACTCCACTGTAACCTCGGGGAGATAAGA-CCT-GATGCGATCAACTCTGCTGTAACT
1 ATC--TG--CTCCGCTGTAATCTCAGGGAGATAAGATCCTGGCTTCAATCTACTCCACTGTAACC
* ** ** * * **
22423640 TCAGTGAGATAAGATCCTTTATT-TT-AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTGTG
62 TCAGGGAGATAAGAT-CTAAATTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG
** *
22423703 TCTTCG
125 AATGCG
22423709 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC-CTGGCTTCAATCTACTCCACTGTAACCTCA
**
22423774 GGGAGATAAGATCTGAAATTCTTCTGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-ATG
65 GGGAGATAAGATCT-AAATTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAATG
22423838 CG
129 CG
22423840 ATCT
1 ATCT
22423844 ACTCTGCTNN
Statistics
Matches: 299, Mismatches: 77, Indels: 42
0.72 0.18 0.10
Matches are distributed among these distances:
128 26 0.09
129 34 0.11
130 11 0.04
131 163 0.55
132 12 0.04
133 30 0.10
134 22 0.07
135 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (130 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCTGGCTTCAATCTACTCCACTGTAACCTCAG
GGAGATAAGATCTAAATTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAATGCG
Found at i:22423844 original size:87 final size:87
Alignment explanation
Indices: 22423584--22423847 Score: 202
Period size: 87 Copynumber: 3.1 Consensus size: 87
22423574 TTCTTCGGTG
* ** * * * ** * *
22423584 TACTCCACTGTAACCTCGGGGAGATAAGA-CCTG-ATGCGATCAACTCTGCTGTAACTTCAGTGA
1 TACTCCACTGTAACCTCAGGGAGATAAGATTGTGTCTTCGATCTACTCCACTGTAACCTCAGGGA
** **
22423647 GATAAGATC-CTTTATTTTAATC
66 GATAAGATCTCTGGA-TGCAATC
** * * * * *
22423669 CGCTCCACTGTAATCTCAGGGAGATAGGATTGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGA
1 TACTCCACTGTAACCTCAGGGAGATAAGATTGTGTCTTCGATCTACTCCACTGTAACCTCAGGGA
* *
22423734 GATAAGATCTCTGGCTTCAATC
66 GATAAGATCTCTGGATGCAATC
22423756 TACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCTG-TCTACTCCACTGTAACCTC
1 TACTCCACTGTAACCTCAGGGAGATAAGAT-TG---TGTCTTC-GATCTACTCCACTGTAACCTC
*
22423819 AGGGAGATAAGA-C-CT-GATGCGATC
61 AGGGAGATAAGATCTCTGGATGCAATC
22423843 TACTC
1 TACTC
22423848 TGCTNNNNNN
Statistics
Matches: 142, Mismatches: 29, Indels: 14
0.77 0.16 0.08
Matches are distributed among these distances:
85 24 0.17
86 2 0.01
87 74 0.52
88 6 0.04
89 1 0.01
90 33 0.23
91 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (87 bp):
TACTCCACTGTAACCTCAGGGAGATAAGATTGTGTCTTCGATCTACTCCACTGTAACCTCAGGGA
GATAAGATCTCTGGATGCAATC
Found at i:22423997 original size:44 final size:44
Alignment explanation
Indices: 22423919--22424002 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
22423909 NNNNNNGTGT
* * * *
22423919 CTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGG
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGG
22423963 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCT
22424003 GAAATATTCG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGG
Found at i:22426665 original size:70 final size:66
Alignment explanation
Indices: 22426590--22426734 Score: 170
Period size: 69 Copynumber: 2.1 Consensus size: 66
22426580 CTAGATTTCT
22426590 CTTTTTTCATTCTT-CTTTC-TTTTTCTCATTTTCATTTTGA-TCTTGATTTTGATTTTTTCTTC
1 CTTTTTT-ATT-TTACTTTCATTTTT-TCATTTTCATTTTGACT-TTGATTTTGA-TTTTTCTT-
22426652 TTTCTTC
60 TTTCTTC
* *
22426659 TTTTTTTATTTTGATTTTCGATTTTTTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTTTTC
1 CTTTTTTATTTT-ACTTTC-ATTTTTTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTTTTC
22426724 TTCC
64 TT-C
22426728 CTTTTTT
1 CTTTTTT
22426735 GATCTGAGCC
Statistics
Matches: 67, Mismatches: 3, Indels: 12
0.82 0.04 0.15
Matches are distributed among these distances:
67 2 0.03
68 9 0.13
69 25 0.37
70 25 0.37
71 6 0.09
ACGTcount: A:0.10, C:0.15, G:0.06, T:0.70
Consensus pattern (66 bp):
CTTTTTTATTTTACTTTCATTTTTTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTTTTCTT
C
Found at i:22426735 original size:64 final size:69
Alignment explanation
Indices: 22426609--22426737 Score: 171
Period size: 70 Copynumber: 1.9 Consensus size: 69
22426599 TTCTTCTTTC
**
22426609 TTTTTCTCATTTTCATTTTGATCTTGATTTTGATTTTTTCTTCTTTCTTCTTTTTTTATTTTGAT
1 TTTTTCTCATTTTCATTTTGATCTTGATTTTGATTTTTTCTTCTTTCTTC--TCCTTATTTTGAT
22426674 TTTCGA
64 TTTCGA
22426680 TTTTT-TCATTTTCATTTTGA-CTTTGATTTTGA-TTTTTCTT-TTTCTTC-CCTT-TTTTGAT
1 TTTTTCTCATTTTCATTTTGATC-TTGATTTTGATTTTTTCTTCTTTCTTCTCCTTATTTTGAT
22426738 CTGAGCCTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
64 7 0.13
65 2 0.04
68 7 0.13
69 9 0.16
70 25 0.45
71 5 0.09
ACGTcount: A:0.11, C:0.13, G:0.07, T:0.69
Consensus pattern (69 bp):
TTTTTCTCATTTTCATTTTGATCTTGATTTTGATTTTTTCTTCTTTCTTCTCCTTATTTTGATTT
TCGA
Found at i:22430278 original size:112 final size:111
Alignment explanation
Indices: 22430081--22430410 Score: 543
Period size: 111 Copynumber: 3.0 Consensus size: 111
22430071 GAAATTCGAG
* * * *
22430081 AGGATATTTCGCTATTCGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
22430146 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAATTTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTT-GAAAATTTTTTAAA
*
22430193 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* * * **
22430258 GAATTTCTCAAACACAAAACATTGCCTTATTTAAAAAAATTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTTAAA
22430304 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
22430369 AAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
22430411 GTTTTTGATA
Statistics
Matches: 200, Mismatches: 18, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
111 111 0.56
112 89 0.44
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (111 bp):
AGGATATTTGGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTTAAA
Found at i:22430549 original size:18 final size:17
Alignment explanation
Indices: 22430518--22430553 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
22430508 ATATATAATG
*
22430518 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
22430535 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
22430553 A
1 A
22430554 TAAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.72, C:0.08, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:22430964 original size:25 final size:25
Alignment explanation
Indices: 22430895--22430956 Score: 99
Period size: 25 Copynumber: 2.4 Consensus size: 25
22430885 GTGTATGTAT
22430895 ATAAAAATATGAA-ATGTATAATAAAG
1 ATAAAAATAT-AAGA-GTATAATAAAG
22430921 ATAAAAATATAAGAGTATAATAAAG
1 ATAAAAATATAAGAGTATAATAAAG
22430946 ATAAAAATATA
1 ATAAAAATATA
22430957 CTCTTATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 24 0.69
26 11 0.31
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.26
Consensus pattern (25 bp):
ATAAAAATATAAGAGTATAATAAAG
Found at i:22431225 original size:3 final size:3
Alignment explanation
Indices: 22431217--22431259 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
22431207 TGTACATAGC
*
22431217 AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
22431260 CGGGACTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:22433551 original size:51 final size:52
Alignment explanation
Indices: 22433474--22433576 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 52
22433464 GAACGGCGAT
22433474 TGAAGCCGTGGGGGGGGTTCTTGAACGGCGGCTGAGAAAAGAGAGTGAAACC
1 TGAAGCCGTGGGGGGGGTTCTTGAACGGCGGCTGAGAAAAGAGAGTGAAACC
*
22433526 TGAAGCGGT-GGGGGGGTTCTTGAACGGCGGCTGAGAAAAGAGAGTGAAACC
1 TGAAGCCGTGGGGGGGGTTCTTGAACGGCGGCTGAGAAAAGAGAGTGAAACC
22433577 CTAGCAGAGG
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 42 0.84
52 8 0.16
ACGTcount: A:0.27, C:0.15, G:0.43, T:0.16
Consensus pattern (52 bp):
TGAAGCCGTGGGGGGGGTTCTTGAACGGCGGCTGAGAAAAGAGAGTGAAACC
Found at i:22442103 original size:20 final size:21
Alignment explanation
Indices: 22442049--22442119 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 21
22442039 TCTTAGAAAC
22442049 TTTT-TAAAA-TTTTAACTTT
1 TTTTATAAAATTTTTAACTTT
* *
22442068 CTTTAT-ATATTCTTTAA-TTT
1 TTTTATAAAATT-TTTAACTTT
22442088 TTTTATAAAATTTTTATACTTT
1 TTTTATAAAATTTTTA-ACTTT
*
22442110 TTTTAAAAAA
1 TTTTATAAAA
22442120 AAATTAGAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
19 5 0.12
20 14 0.34
21 10 0.24
22 12 0.29
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTATAAAATTTTTAACTTT
Found at i:22444067 original size:31 final size:30
Alignment explanation
Indices: 22444022--22444089 Score: 82
Period size: 32 Copynumber: 2.2 Consensus size: 30
22444012 AATATATAAT
22444022 AAATATATTTTTTTTAATTTTAAATATTTTTA
1 AAATAT-TTTTTTTTAATTTT-AATATTTTTA
* **
22444054 AAATACTTTTTTTTTTATTTTTTTATTTTTA
1 AAATA-TTTTTTTTTAATTTTAATATTTTTA
22444085 AAATA
1 AAATA
22444090 AATTTTTGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 13 0.41
32 18 0.56
33 1 0.03
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (30 bp):
AAATATTTTTTTTTAATTTTAATATTTTTA
Found at i:22444096 original size:31 final size:32
Alignment explanation
Indices: 22444022--22444096 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 32
22444012 AATATATAAT
*
22444022 AAATATATTTTTTTTAATTTTAAATATTTTTA
1 AAATAAATTTTTTTTAATTTTAAATATTTTTA
** * **
22444054 AAATACTTTTTTTTTTATTTT-TTTATTTTTA
1 AAATAAATTTTTTTTAATTTTAAATATTTTTA
22444085 AAATAAATTTTT
1 AAATAAATTTTT
22444097 GGTGTTTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 18 0.50
32 18 0.50
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (32 bp):
AAATAAATTTTTTTTAATTTTAAATATTTTTA
Found at i:22447888 original size:32 final size:32
Alignment explanation
Indices: 22447852--22447967 Score: 128
Period size: 32 Copynumber: 3.6 Consensus size: 32
22447842 AAACGCGTGG
22447852 TTTTGTGAAATGATAACAAATATAAACTTTCA
1 TTTTGTGAAATGATAACAAATATAAACTTTCA
* *
22447884 TTTTGTGAAATGCTAATAAAT-TACAAC-TTCAA
1 TTTTGTGAAATGATAACAAATATA-AACTTTC-A
* * *
22447916 TTTTTGTAAAATGATAACAAATATCAACTTTAA
1 -TTTTGTGAAATGATAACAAATATAAACTTTCA
* *
22447949 TTTTGTTAAATGATGACAA
1 TTTTGTGAAATGATAACAA
22447968 TATCCCTCTA
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
31 5 0.07
32 40 0.57
33 22 0.31
34 3 0.04
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (32 bp):
TTTTGTGAAATGATAACAAATATAAACTTTCA
Found at i:22448775 original size:32 final size:32
Alignment explanation
Indices: 22448734--22448798 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
22448724 GGATCCTAAA
*
22448734 CCATGACATGTACTCCGGATCACATGCTAACT
1 CCATGACATGTACTCCGGAGCACATGCTAACT
*
22448766 CCATGACATGTACTCTGGAGCACATGCTAACT
1 CCATGACATGTACTCCGGAGCACATGCTAACT
22448798 C
1 C
22448799 TAGAACGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.25
Consensus pattern (32 bp):
CCATGACATGTACTCCGGAGCACATGCTAACT
Found at i:22459094 original size:5 final size:6
Alignment explanation
Indices: 22459078--22459102 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
22459068 GTAGAAATGC
22459078 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
22459103 GGGGGGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:22460373 original size:17 final size:17
Alignment explanation
Indices: 22460347--22460380 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22460337 TGATAATTAG
22460347 AAAAAAATAAATATATT
1 AAAAAAATAAATATATT
* *
22460364 AAAAATATAAATTTATT
1 AAAAAAATAAATATATT
22460381 TTGCTATCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAAAAATAAATATATT
Found at i:22463597 original size:31 final size:31
Alignment explanation
Indices: 22463558--22463626 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
22463548 AATTAAAAGG
*
22463558 TGAA-AGATCGATTAAATAAACAAATGGATA
1 TGAATAGATCAATTAAATAAACAAATGGATA
* *
22463588 TGAATAGATCAATTGAATAAATAAATGGATA
1 TGAATAGATCAATTAAATAAACAAATGGATA
*
22463619 TAAATAGA
1 TGAATAGA
22463627 AGATAACCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 4 0.12
31 30 0.88
ACGTcount: A:0.54, C:0.04, G:0.16, T:0.26
Consensus pattern (31 bp):
TGAATAGATCAATTAAATAAACAAATGGATA
Found at i:22463990 original size:7 final size:7
Alignment explanation
Indices: 22463978--22464004 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
22463968 TTTTGGTATA
22463978 AATAAAT
1 AATAAAT
22463985 AATAAAT
1 AATAAAT
22463992 AATAAAT
1 AATAAAT
22463999 AATAAA
1 AATAAA
22464005 ATCTAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AATAAAT
Found at i:22469127 original size:13 final size:13
Alignment explanation
Indices: 22469109--22469135 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22469099 AAATCTAAAA
22469109 GTGTTCATGAGTC
1 GTGTTCATGAGTC
22469122 GTGTTCATGAGTC
1 GTGTTCATGAGTC
22469135 G
1 G
22469136 AGTTGAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (13 bp):
GTGTTCATGAGTC
Found at i:22480429 original size:31 final size:31
Alignment explanation
Indices: 22480391--22480475 Score: 136
Period size: 31 Copynumber: 2.7 Consensus size: 31
22480381 GGCCCATTTT
22480391 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
*
22480422 TATTTTAAAAATATTTTAAAATTAAAAAAAG
1 TATTTTAAAAATATTTAAAAATTAAAAAAAG
22480453 TATTTTAAAAATATTTTAAAAAT
1 TATTTTAAAAATA-TTTAAAAAT
22480476 ATTTTAAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
31 39 0.78
32 11 0.22
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:22480468 original size:42 final size:41
Alignment explanation
Indices: 22480415--22480514 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
22480405 TAAAAAATTA
*
22480415 AAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAAGTATTT
1 AAAAAA-TATTTTAAAAATATTTTAAAATT-AAAAAAGTATGT
*
22480458 TAAAAATATTTTAAAAATATTTTAAAATTAAAAAAGTATGT
1 AAAAAATATTTTAAAAATATTTTAAAATTAAAAAAGTATGT
22480499 AAAAAATATTTTAAAA
1 AAAAAATATTTTAAAA
22480515 TTAAAAAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
41 26 0.48
42 23 0.43
43 5 0.09
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (41 bp):
AAAAAATATTTTAAAAATATTTTAAAATTAAAAAAGTATGT
Found at i:22480514 original size:11 final size:11
Alignment explanation
Indices: 22480391--22480484 Score: 92
Period size: 11 Copynumber: 8.9 Consensus size: 11
22480381 GGCCCATTTT
22480391 TATTTT-AAAA
1 TATTTTAAAAA
22480401 -ATTTTAAAAA
1 TATTTTAAAAA
**
22480411 -ATTAAAAAAA
1 TATTTTAAAAA
22480421 GTATTTTAAAAA
1 -TATTTTAAAAA
22480433 TATTTT--AAA
1 TATTTTAAAAA
**
22480442 -ATTAAAAAAA
1 TATTTTAAAAA
22480452 GTATTTTAAAAA
1 -TATTTTAAAAA
22480464 TATTTTAAAAA
1 TATTTTAAAAA
22480475 TATTTTAAAA
1 TATTTTAAAA
22480485 TTAAAAAAGT
Statistics
Matches: 69, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
8 3 0.04
9 8 0.12
10 15 0.22
11 27 0.39
12 16 0.23
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:22481203 original size:16 final size:16
Alignment explanation
Indices: 22481182--22481212 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22481172 CATGTTGGAG
22481182 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
22481198 CATATATATTTGAAA
1 CATATAAATTTGAAA
22481213 ACTTTTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:22481376 original size:18 final size:19
Alignment explanation
Indices: 22481330--22481376 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 19
22481320 GTAACTTTTT
22481330 TTAAA-TTTTTTAAAATTA
1 TTAAATTTTTTTAAAATTA
*
22481348 TTATACTTTTTTTTAAAATTA
1 TTA-A-ATTTTTTTAAAATTA
22481369 -TAAATTTT
1 TTAAATTTT
22481377 GGATTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
18 7 0.29
19 2 0.08
20 2 0.08
21 13 0.54
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTAAATTTTTTTAAAATTA
Found at i:22481402 original size:20 final size:21
Alignment explanation
Indices: 22481379--22481429 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 21
22481369 TAAATTTTGG
22481379 ATTTTTTATAAATGT-TTTT-A
1 ATTTTTTATAAAT-TATTTTAA
* *
22481399 A-TTTTGAAAAATTATTTTAA
1 ATTTTTTATAAATTATTTTAA
22481419 ATTTTTTATAA
1 ATTTTTTATAA
22481430 TTTTTGTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
18 1 0.04
19 13 0.54
20 3 0.12
21 7 0.29
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTTTTTATAAATTATTTTAA
Found at i:22481431 original size:20 final size:20
Alignment explanation
Indices: 22481379--22481431 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
22481369 TAAATTTTGG
* * *
22481379 ATTTTTTATAAATGTTTTTA
1 ATTTTTTATAATTATTTTAA
** *
22481399 ATTTTGAAAAATTATTTTAA
1 ATTTTTTATAATTATTTTAA
22481419 ATTTTTTATAATT
1 ATTTTTTATAATT
22481432 TTTGTTGTGA
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
ATTTTTTATAATTATTTTAA
Found at i:22481590 original size:23 final size:23
Alignment explanation
Indices: 22481540--22481593 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
22481530 CATAACTTGA
* *
22481540 AACTCAAATTACTTATTCGAGTT
1 AACTCAAATAACTTATTCGAGTC
*
22481563 GACTCAAATAACTCTATTCGA-TC
1 AACTCAAATAACT-TATTCGAGTC
22481586 AACTCAAA
1 AACTCAAA
22481594 ATTCGAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.31
Consensus pattern (23 bp):
AACTCAAATAACTTATTCGAGTC
Found at i:22483546 original size:21 final size:21
Alignment explanation
Indices: 22483517--22483564 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
22483507 GATAGAAATT
22483517 AAAAATTAAAAATAAAA-AAAC
1 AAAAATTAAAAA-AAAATAAAC
* *
22483538 AAAATTTAAAAAAAAATAAAG
1 AAAAATTAAAAAAAAATAAAC
22483559 AAAAAT
1 AAAAAT
22483565 CTCTGGAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (21 bp):
AAAAATTAAAAAAAAATAAAC
Found at i:22485309 original size:12 final size:12
Alignment explanation
Indices: 22485276--22485302 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22485266 TGTTTGATTC
22485276 TTTTCTTTTCTT
1 TTTTCTTTTCTT
22485288 TTTTCTTTTCTT
1 TTTTCTTTTCTT
22485300 TTT
1 TTT
22485303 CATTTTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:22490643 original size:21 final size:21
Alignment explanation
Indices: 22490614--22490655 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22490604 TAAGGTAGTA
*
22490614 TTAAAGTTTTGTTAGAAAATT
1 TTAAAGTTTTGGTAGAAAATT
* *
22490635 TTAATGTTTTGGTAGATAATT
1 TTAAAGTTTTGGTAGAAAATT
22490656 AATTAGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (21 bp):
TTAAAGTTTTGGTAGAAAATT
Found at i:22491899 original size:26 final size:25
Alignment explanation
Indices: 22491869--22491934 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
22491859 GCAACTCTTA
* *
22491869 TGAGCGTCCCGTTATATGGCTCTTCG
1 TGAGCTTCCCGTTA-AAGGCTCTTCG
* *
22491895 TGAGCTTCCCAATTAAAGGCTCTTTG
1 TGAGCTTCCC-GTTAAAGGCTCTTCG
22491921 TGAGCTTCCCGTTA
1 TGAGCTTCCCGTTA
22491935 GTGCTCGCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.09
26 28 0.82
27 3 0.09
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.35
Consensus pattern (25 bp):
TGAGCTTCCCGTTAAAGGCTCTTCG
Found at i:22492005 original size:24 final size:24
Alignment explanation
Indices: 22491972--22492030 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
22491962 GCTATCTGGT
*
22491972 GCTACTCGTTAATTGCTCTTCAGA
1 GCTACCCGTTAATTGCTCTTCAGA
**
22491996 GCTACCCGTTAATTGCTCTTTGGA
1 GCTACCCGTTAATTGCTCTTCAGA
22492020 GCTACCCGTTA
1 GCTACCCGTTA
22492031 TAAGCTCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.36
Consensus pattern (24 bp):
GCTACCCGTTAATTGCTCTTCAGA
Found at i:22492037 original size:24 final size:26
Alignment explanation
Indices: 22491994--22492058 Score: 82
Period size: 24 Copynumber: 2.6 Consensus size: 26
22491984 TTGCTCTTCA
*
22491994 GAGCTACCCGTTA-ATTGCTCTTTG-
1 GAGCTACCCGTTATATAGCTCTTTGT
22492018 GAGCTACCCGTTATA-AGCTCTTTGT
1 GAGCTACCCGTTATATAGCTCTTTGT
* *
22492043 GAGCTTCCCTTTATAT
1 GAGCTACCCGTTATAT
22492059 TTCCCGGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 21 0.60
25 14 0.40
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.38
Consensus pattern (26 bp):
GAGCTACCCGTTATATAGCTCTTTGT
Found at i:22497477 original size:20 final size:21
Alignment explanation
Indices: 22497454--22497497 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
22497444 AACTCTTCAG
22497454 AAAAA-TAGAA-ATAAATATAT
1 AAAAATTAGAATA-AAATATAT
22497474 AAAAATTTAGAATAAAATATAT
1 AAAAA-TTAGAATAAAATATAT
22497496 AA
1 AA
22497498 TCTAATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.24
22 15 0.71
23 1 0.05
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (21 bp):
AAAAATTAGAATAAAATATAT
Found at i:22504542 original size:19 final size:20
Alignment explanation
Indices: 22504507--22504550 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
22504497 ACTTCTTTTC
*
22504507 GCATT-CATTTCATTCATCT
1 GCATTACATTTCATTCATAT
22504526 GCATTACATTTCA-TCATAT
1 GCATTACATTTCATTCATAT
22504545 GCATTA
1 GCATTA
22504551 AGATTCATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.43
Consensus pattern (20 bp):
GCATTACATTTCATTCATAT
Found at i:22510256 original size:189 final size:189
Alignment explanation
Indices: 22509936--22510310 Score: 583
Period size: 189 Copynumber: 2.0 Consensus size: 189
22509926 TCTGTTGTGA
* * * * * *
22509936 CTACTGAAGAATGCGCTCAAGAAGGACATCTTTGGAAACTAAATTTTGACGAAGCTTCAAACGTT
1 CTACTGAAGAATGCGCTCAAAAAAGACATCCTTAGAAACTAAATTTTAACGAAGCTTCAAACGCT
*
22510001 ATGGGTAACGGAATCGGGGCAGTCCTAGTATCTCTAAACAGAGATCATTATCCCTTTACTAGTAA
66 ATGGGTAACGGAATCGAGGCAGTCCTAGTATCTCTAAACAGAGATCATTATCCCTTTACTAGTAA
22510066 ATTGGATTTTTATTGCACGAATAATATGGAAAAATACGAAGCATGCATCATGGGCACCC
131 ATTGGATTTTTATTGCACGAATAATATGGAAAAATACGAAGCATGCATCATGGGCACCC
* *
22510125 CTACTGAAGAATGTGCTCAAAAAAGACATCCTTAGAAACTAAATTTTAACGGAGCTTCAAACGCT
1 CTACTGAAGAATGCGCTCAAAAAAGACATCCTTAGAAACTAAATTTTAACGAAGCTTCAAACGCT
* * *
22510190 ATGGGTAACGGAATCGAGGCAGTCTTGGTATC-CTAAA-ATGGGGATCATTATCCCTTTACTAGT
66 ATGGGTAACGGAATCGAGGCAGTCCTAGTATCTCTAAACA--GAGATCATTATCCCTTTACTAGT
* * *
22510253 AAATTGGATTTTTATTGCATGAATAATATGGCAAAATATGAAGCATGCATCATGGGCA
129 AAATTGGATTTTTATTGCACGAATAATATGGAAAAATACGAAGCATGCATCATGGGCA
22510311 TCTGTGCAGC
Statistics
Matches: 169, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
187 1 0.01
188 5 0.03
189 163 0.96
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (189 bp):
CTACTGAAGAATGCGCTCAAAAAAGACATCCTTAGAAACTAAATTTTAACGAAGCTTCAAACGCT
ATGGGTAACGGAATCGAGGCAGTCCTAGTATCTCTAAACAGAGATCATTATCCCTTTACTAGTAA
ATTGGATTTTTATTGCACGAATAATATGGAAAAATACGAAGCATGCATCATGGGCACCC
Found at i:22512116 original size:50 final size:49
Alignment explanation
Indices: 22512061--22512234 Score: 204
Period size: 50 Copynumber: 3.5 Consensus size: 49
22512051 CATTGAGATT
*
22512061 ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATAGAGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGAGACAT-GAGTTGGCACCGAG
* * * *
22512111 ATGAGAGATCCCCCGTAAGACCATGTCTGAGACATGGCGTTGGCACTGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGAGACAT-GAGTTGGCACCGAG
* * * * *
22512161 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGACATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGA-GTTGGCACCGAG
** *
22512211 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCACGTAAGACCAT
22512235 ATAAGACTAT
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
49 1 0.01
50 105 0.99
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.20
Consensus pattern (49 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGAGTTGGCACCGAG
Found at i:22512206 original size:100 final size:103
Alignment explanation
Indices: 22512009--22512234 Score: 282
Period size: 100 Copynumber: 2.2 Consensus size: 103
22511999 TTAAGGGAAT
*
22512009 GAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCA
1 GAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCA-TGAG--TATGAGAGGTCCCA
* * *
22512074 TGTAAGACCATGTCTGAGACATAGAGTTGGCACCGAGATGA
63 CGTAAGACCATGTCTGAGACATAGAATGGGCACCGAGATGA
** * *
22512115 GAGATCCCCCGTAAGACCATGTCTGAGACATGGCGTTGGCA-C-TGAG-ATGAGAGGTCCCCCGT
1 GAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCATGAGTATGAGAGGTCCCACGT
* *
22512177 AAGACCATGTCTGGGACAT-GACATGGGCACCGATATGA
66 AAGACCATGTCTGAGACATAGA-ATGGGCACCGAGATGA
22512215 GA-ACTCCCATGTAAGACCAT
1 GAGA-TCCCATGTAAGACCAT
22512235 ATAAGACTAT
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
99 3 0.03
100 61 0.58
103 4 0.04
105 1 0.01
106 37 0.35
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (103 bp):
GAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCATGAGTATGAGAGGTCCCACGT
AAGACCATGTCTGAGACATAGAATGGGCACCGAGATGA
Found at i:22515191 original size:501 final size:501
Alignment explanation
Indices: 22514244--22515240 Score: 1521
Period size: 501 Copynumber: 2.0 Consensus size: 501
22514234 GTGAAGGCAG
*
22514244 CTAATAAGAACATTAACAAGATCATGTGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
1 CTAATAAGAACATTAACAAGATCATGGGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
* *
22514309 TTACCATTTTCCCTCTATGCTTATCAAACGTCTATTAGAACCTCCACTGAGGCAACGCCTTTCCC
66 TTACCATTTGCCCTCTATGCTTATCAAACGTCTATTAGAACCTCCACCGAGGCAACGCCTTTCCC
* * *
22514374 ATTGGTTTATGGAATAGAGGCGGTTTTGCCCATTGAAGCCGAGATTCATTCTCTTTGAGTTTTGT
131 ATTGGTTTATAGAATAGAGGCGATTTTGCCCATTGAAGCCGAGATTCATTCTCTCTGAGTTTTGT
* * *
22514439 TAGATTTGAAGTTAGACGAAACATAATGGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
196 TAGAGTTGAAGTTAGACGAAACAGAATAGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
* * * * *
22514504 AAGAAGAGGTTGAATGCTATCCGTCATGGTTAGATGTACTAAAAATGAATGATGTGAGCTTATGA
261 AAGAAGAGGCTGAAAGCTATCCGTCATGGTCAGATGTACTAAAAACGAATGATGCGAGCTTATGA
* * * *
22514569 CAAAAAGGTTCGCCCAAGAGAATTTCATGAGGGGGACCTGGTATTGAAAAATATCATTCCCATAC
326 CAAAAAGGTTCGCCCAAGAAAATTCCATGAGGGGGACCTGGAATTGAAAAAGATCATTCCCATAC
* * *
22514634 AAAAGGAATTCAAAAGAAAGTAGATGCCAAACTAGGAAGGACCTTATGTGATAAAGAAGGCCTTT
391 AAAAGGAATTCAAAAGAAAGTAGATGCCAAACTAGGAAGAACCTTATGTAATAAAGAAGACCTTT
* * * *
22514699 GCTGGAGGAGTGCTGATTTTGATCTAGATGGATGGTAAAAATCTGT
456 GCTAGAGGAGCGCTGATTTTGACCGAGATGGATGGTAAAAATCTGT
* *
22514745 CTAATAAGAACATTAAGAAGATCGTGGGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
1 CTAATAAGAACATTAACAAGATCATGGGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
** * *
22514810 TTACCATTTGCCCTCTATGCTTATTGAACGTCTATTAGAACCTCCACCGGGGCAACGCCTTTCTC
66 TTACCATTTGCCCTCTATGCTTATCAAACGTCTATTAGAACCTCCACCGAGGCAACGCCTTTCCC
* * * *
22514875 ATTGGTTTATAGAATGGAGGCGATTTTGTCCATTGAAGTCGAGATTCCTTCTCTCTGAGTTTTGT
131 ATTGGTTTATAGAATAGAGGCGATTTTGCCCATTGAAGCCGAGATTCATTCTCTCTGAGTTTTGT
**
22514940 TAGAGTTGAAGTTAGACGAAGTAGAATAGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
196 TAGAGTTGAAGTTAGACGAAACAGAATAGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
* *
22515005 GAGAAGAGGCTGAAAGTTATCCGTCATGGTCAGATGTACTAAAAACGAATGATGCGAGCTTATGA
261 AAGAAGAGGCTGAAAGCTATCCGTCATGGTCAGATGTACTAAAAACGAATGATGCGAGCTTATGA
* *
22515070 CAAAAAGGTTCGCTCCAA-AAAATTCCATGAGTGGGACCTGGAATTGAAAAAGATTC-TTTCCAT
326 CAAAAAGGTTCGC-CCAAGAAAATTCCATGAGGGGGACCTGGAATTGAAAAAGA-TCATTCCCAT
* * * * * *
22515133 ACAAAAGGACTTTAGAGGAAAGTGGATGCCAAACTGGGAAGAACCTTATGTAATAAAGAAGACCT
389 ACAAAAGGAATTCAAAAGAAAGTAGATGCCAAACTAGGAAGAACCTTATGTAATAAAGAAGACCT
**
22515198 TTTTTAGAGGAGCGCTGATTTTGACCGAGATGGATGGTAAAAA
454 TTGCTAGAGGAGCGCTGATTTTGACCGAGATGGATGGTAAAAA
22515241 CCTACCTAAT
Statistics
Matches: 445, Mismatches: 49, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
501 439 0.99
502 6 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (501 bp):
CTAATAAGAACATTAACAAGATCATGGGGAAAATGACTGAGACTTATAAAGATTGGCATGAGAAG
TTACCATTTGCCCTCTATGCTTATCAAACGTCTATTAGAACCTCCACCGAGGCAACGCCTTTCCC
ATTGGTTTATAGAATAGAGGCGATTTTGCCCATTGAAGCCGAGATTCATTCTCTCTGAGTTTTGT
TAGAGTTGAAGTTAGACGAAACAGAATAGATCCAATCCTGATATGATCAGCTGAACTTGATTGAA
AAGAAGAGGCTGAAAGCTATCCGTCATGGTCAGATGTACTAAAAACGAATGATGCGAGCTTATGA
CAAAAAGGTTCGCCCAAGAAAATTCCATGAGGGGGACCTGGAATTGAAAAAGATCATTCCCATAC
AAAAGGAATTCAAAAGAAAGTAGATGCCAAACTAGGAAGAACCTTATGTAATAAAGAAGACCTTT
GCTAGAGGAGCGCTGATTTTGACCGAGATGGATGGTAAAAATCTGT
Found at i:22516244 original size:44 final size:44
Alignment explanation
Indices: 22516181--22516688 Score: 404
Period size: 44 Copynumber: 11.1 Consensus size: 44
22516171 TTAAAGCTAC
* *
22516181 AAGTTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCATATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * *
22516225 AAGTTACAAATCTTATCTCCCTGGAGTTACAGTGAAGCAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * * *
22516269 AAGTTATAAATGTTATCTCCCTAAAGTTGCAGTGAAGCAAATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * *
22516313 AAGCTACAAATCTTATCACCCTGGAGTTGCAGTGGAGCAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * * * *
22516357 AAGCTACAATTCTTATTTCCTTGAAGTTGCAGTAGAACAGATTAAAG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G
** * *
22516404 CTACAAGTTATGAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTA
1 ----AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
** * * * * *
22516452 AAACTACAAATCTTATTTTCCTGAAGTTGTAGTGGAACAAATTAAAG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G
** * * * *
22516499 CTACAAGTTATGAATCTTATCTCCTTAAAGTTGCAATGGAGCTGATTG
1 ----AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
** * * *
22516547 AAACTACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G
** *
22516594 CTACAAGTTATGAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTG
1 ----AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * *
22516642 AAGTTACAAGTCTCATCTCCCTGAAGTTGCATTGGAGCAGATTG
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
22516686 AAG
1 AAG
22516689 CGTCAAACCC
Statistics
Matches: 361, Mismatches: 82, Indels: 42
0.74 0.17 0.09
Matches are distributed among these distances:
44 256 0.71
47 2 0.01
48 2 0.01
51 101 0.28
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (44 bp):
AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
Found at i:22516335 original size:88 final size:88
Alignment explanation
Indices: 22516181--22516689 Score: 313
Period size: 95 Copynumber: 5.5 Consensus size: 88
22516171 TTAAAGCTAC
* * * * *
22516181 AAGTTACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCATATTGAAGTTACAAATCTTATCTCCC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGCTACAAATCTTATCACCC
22516246 TGGAGTTACAGTGAAGCAGATTG
66 TGGAGTTACAGTGAAGCAGATTG
* * *
22516269 AAGTTATAAATGTTATCTCCCTAAAGTTGCAGTGAAGCAAATTGAAGCTACAAATCTTATCACCC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGCTACAAATCTTATCACCC
* *
22516334 TGGAGTTGCAGTGGAGCAGATTG
66 TGGAGTTACAGTGAAGCAGATTG
* * * * * *
22516357 AAGCTACAATTCTTATTTCCTTGAAGTTGCAGTAGAA-CAGATTAAAGCTACAAGTTATGAATCT
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAAATTGAAGCTAC-----A--AATCT
* * * * * *
22516421 TATCTCCTTGAAGTTGCAGTGGAGCAGATTA
58 TATCACCCTGGAGTTACAGTGAAGCAGATTG
** * * * *
22516452 AAACTACAAATCTTATTTTCCTGAAGTTGTAGTGGAA-CAAATTAAAGCTACAAGTTATGAATCT
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAAATTGAAGCTAC-----A--AATCT
* * ** * * * *
22516516 TATCTCCTTAAAGTTGCAATGGAGCTGATTG
58 TATCACCCTGGAGTTACAGTGAAGCAGATTG
** * * * *
22516547 AAACTACAAATCTTATTTCCCTGAAGTTGTAGTGGAA-CAGATTAAAGCTACAAGTTATGAATCT
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAAATTGAAGCTAC-----A--AATCT
* * * * *
22516611 TATCTCCCTGAAGTTGCAATGGAGCAGATTG
58 TATCACCCTGGAGTTACAGTGAAGCAGATTG
* * * * *
22516642 AAGTTACAAGTCTCATCTCCCTGAAGTTGCATTGGAGCAGATTGAAGC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGC
22516690 GTCAAACCCT
Statistics
Matches: 364, Mismatches: 48, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
88 116 0.32
89 3 0.01
93 1 0.00
94 2 0.01
95 242 0.66
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (88 bp):
AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGCTACAAATCTTATCACCC
TGGAGTTACAGTGAAGCAGATTG
Found at i:22516448 original size:95 final size:95
Alignment explanation
Indices: 22516233--22516689 Score: 516
Period size: 95 Copynumber: 4.9 Consensus size: 95
22516223 TGAAGTTACA
* * * * ** * * * *
22516233 AATCTTATCTCCCTGGAGTTACAGTGAAGCAGATTGAAGTTATAAATGTTATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
* *
22516298 CAGT-GAAGCAAATTGAAGCTAC-----A--
66 CAGTGGAA-CAGATTAAAGCTACAAGTTATG
* * * * * *
22516321 AATCTTATCACCCTGGAGTTGCAGTGGAGCAGATTGAAGCTACAATTCTTATTTCCTTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
*
22516386 CAGTAGAACAGATTAAAGCTACAAGTTATG
66 CAGTGGAACAGATTAAAGCTACAAGTTATG
* * * *
22516416 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACTACAAATCTTATTTTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
* *
22516481 TAGTGGAACAAATTAAAGCTACAAGTTATG
66 CAGTGGAACAGATTAAAGCTACAAGTTATG
* * *
22516511 AATCTTATCTCCTTAAAGTTGCAATGGAGCTGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
*
22516576 TAGTGGAACAGATTAAAGCTACAAGTTATG
66 CAGTGGAACAGATTAAAGCTACAAGTTATG
** * * *
22516606 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGTTACAAGTCTCATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
* * *
22516671 CATTGGAGCAGATTGAAGC
66 CAGTGGAACAGATTAAAGC
22516690 GTCAAACCCT
Statistics
Matches: 320, Mismatches: 41, Indels: 9
0.86 0.11 0.02
Matches are distributed among these distances:
88 71 0.22
89 3 0.01
93 1 0.00
95 245 0.77
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (95 bp):
AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAACTACAAATCTTATTTCCCTGAAGTTG
CAGTGGAACAGATTAAAGCTACAAGTTATG
Found at i:22516647 original size:139 final size:132
Alignment explanation
Indices: 22516130--22516687 Score: 463
Period size: 139 Copynumber: 4.0 Consensus size: 132
22516120 CAGATCAATA
*
22516130 AAACTACAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTT
1 AAACTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAG---C----TACAAATCTT
* * * * * *
22516195 ATCTCCCTGAAGTTGTAGTGGAGCATATTGAAGTTACAAATCTTATCTCCCTGGAGTTACAGTGA
59 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGG
22516260 AGCAGATTG
124 AGCAGATTG
** * * * * * *
22516269 AAGTTATAAATGTTATCTCCCTAAAGTTGCAGT-GAAGCAAATTGAAGCTACAAATCTTATCACC
1 AAACTACAAATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTAAAGCTACAAATCTTATCTCC
* * * * * * *
22516333 CTGGAGTTGCAGTGGAGCAGATTGAAGCTACAATTCTTATTTCCTTGAAGTTGCAGTAGAACAGA
65 CTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
22516398 TT-
130 TTG
* * *
22516400 AAAGCTACAAGTTATGAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACTACAAATCT
1 AAA-CTAC-----A--AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATCT
* * * * * * * * *
22516465 TATTTTCCTGAAGTTGTAGTGGAACAAATTAAAGCTACAAGTTATGAATCTTATCTCCTTAAAGT
58 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-A---A-G--TCTTATCTCCCTGAAGT
* *
22516530 TGCAATGGAGCTGATTG
116 TGCAGTGGAGCAGATTG
* *
22516547 AAACTACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTATGAATCTT
1 AAACTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAC-----A--AATCTT
* * *
22516612 ATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGTTACAAGTCTCATCTCCCTGAAGTTGCATTGG
59 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGG
22516677 AGCAGATTG
124 AGCAGATTG
22516686 AA
1 AA
22516688 GCGTCAAACC
Statistics
Matches: 330, Mismatches: 64, Indels: 50
0.74 0.14 0.11
Matches are distributed among these distances:
131 2 0.01
132 72 0.22
136 1 0.00
137 1 0.00
138 3 0.01
139 173 0.52
140 3 0.01
141 2 0.01
142 1 0.00
143 1 0.00
144 1 0.00
145 1 0.00
146 66 0.20
147 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (132 bp):
AAACTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATCTTATCTCCC
TGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
TG
Found at i:22519780 original size:11 final size:11
Alignment explanation
Indices: 22519764--22519789 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
22519754 TAGAAGAGAC
22519764 GAAACAGGGGA
1 GAAACAGGGGA
22519775 GAAACAGGGGA
1 GAAACAGGGGA
22519786 GAAA
1 GAAA
22519790 GAAGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAACAGGGGA
Done.