Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 69 of 136
Found at i:22818847 original size:10 final size:10
Alignment explanation
Indices: 22818832--22818898 Score: 50
Period size: 10 Copynumber: 6.6 Consensus size: 10
22818822 AACAAATAAT
22818832 TAAAAAATTA
1 TAAAAAATTA
22818842 TAAAAATATT-
1 TAAAAA-ATTA
22818852 TAAATAAA--A
1 TAAA-AAATTA
*
22818861 TAAAATAATTT
1 TAAAA-AATTA
22818872 TAAAAAATATA
1 TAAAAAAT-TA
**
22818883 TAAAAGTTTA
1 TAAAAAATTA
22818893 TAAAAA
1 TAAAAA
22818899 TTAGCATGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
8 1 0.02
9 6 0.13
10 21 0.47
11 17 0.38
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:22818854 original size:20 final size:20
Alignment explanation
Indices: 22818825--22818887 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
22818815 TCACGTCAAC
*
22818825 AAATAATTAAAAAATTATAA
1 AAATATTTAAAAAATTATAA
*
22818845 AAATATTTAAATAAAATA-AA
1 AAATATTTAAA-AAATTATAA
22818865 ATAAT-TTTAAAAAATATATAA
1 A-AATATTTAAAAAAT-TATAA
22818886 AA
1 AA
22818888 GTTTATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
19 3 0.08
20 22 0.61
21 11 0.31
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATATTTAAAAAATTATAA
Found at i:22818867 original size:18 final size:18
Alignment explanation
Indices: 22818825--22818880 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
22818815 TCACGTCAAC
22818825 AAATAA-TTAAAAAATTATA
1 AAATAATTTAAAAAA--ATA
22818844 AAA-ATATTTAAATAAAATA
1 AAATA-ATTTAAA-AAAATA
*
22818863 AAATAATTTTAAAAAATA
1 AAATAATTTAAAAAAATA
22818881 TATAAAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
18 7 0.22
19 16 0.50
20 6 0.19
21 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATAATTTAAAAAAATA
Found at i:22823451 original size:6 final size:6
Alignment explanation
Indices: 22823440--22823464 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
22823430 AGCTTTATTA
22823440 CGTGTT CGTGTT CGTGTT CGTGTT C
1 CGTGTT CGTGTT CGTGTT CGTGTT C
22823465 ATTTCCGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.32, T:0.48
Consensus pattern (6 bp):
CGTGTT
Found at i:22836156 original size:35 final size:35
Alignment explanation
Indices: 22836096--22836262 Score: 228
Period size: 35 Copynumber: 4.7 Consensus size: 35
22836086 GATTGGAGTT
* * * *
22836096 GCTCTTATGAGTATTAGTGTATTTCGGAGGGATTA
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
22836131 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
22836166 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
* **
22836201 GCTCTTACGAGCATTGGTGTGTTTCAGATAGATT-
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
* *
22836235 GATTCTTATGAGCATATGGTGTGTTTCG
1 G-CTCTTACGAGCAT-TGGTGTGTTTCG
22836263 ATTGGATTGT
Statistics
Matches: 120, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
34 1 0.01
35 108 0.90
36 11 0.09
ACGTcount: A:0.19, C:0.13, G:0.31, T:0.38
Consensus pattern (35 bp):
GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
Found at i:22839491 original size:5 final size:5
Alignment explanation
Indices: 22839481--22839505 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
22839471 ACTACACTTC
22839481 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
22839506 GAATAAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:22845320 original size:16 final size:16
Alignment explanation
Indices: 22845267--22845322 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
22845257 CGTTTGGTTC
*
22845267 GCTGTAATGGAATAGA
1 GCTGTAATGAAATAGA
* * *
22845283 GTTATAATGTAATAGA
1 GCTGTAATGAAATAGA
*
22845299 GTTGTAATGAAATAGA
1 GCTGTAATGAAATAGA
22845315 GCTGTAAT
1 GCTGTAAT
22845323 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (16 bp):
GCTGTAATGAAATAGA
Found at i:22847756 original size:40 final size:40
Alignment explanation
Indices: 22847670--22847758 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
22847660 CAGGGGACGT
* *
22847670 GTCAGCAAATCGCATCCACGTCAGCGCAGTTTGCTGACAT
1 GTCAGCAAATCGCATCCACGTAAGCGCAGTTTGCTGACAC
* * * * *
22847710 GGCAGCAAATTGCTTCCACGTAAGCGCGGTTTG-TGTCCAC
1 GTCAGCAAATCGCATCCACGTAAGCGCAGTTTGCTG-ACAC
22847750 GTCAGCAAA
1 GTCAGCAAA
22847759 GCACGCTGAC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (40 bp):
GTCAGCAAATCGCATCCACGTAAGCGCAGTTTGCTGACAC
Found at i:22847942 original size:12 final size:12
Alignment explanation
Indices: 22847922--22847954 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
22847912 AACTAATCCT
22847922 CTCTCAATTTTC
1 CTCTCAATTTTC
*
22847934 CTCT-AAATTTC
1 CTCTCAATTTTC
22847945 CTCTCAATTT
1 CTCTCAATTT
22847955 GCTCTCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.48
Consensus pattern (12 bp):
CTCTCAATTTTC
Found at i:22847964 original size:23 final size:23
Alignment explanation
Indices: 22847922--22847965 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
22847912 AACTAATCCT
*
22847922 CTCTCAATTTTCCTCTAAATTTC
1 CTCTCAATTTGCCTCTAAATTTC
22847945 CTCTCAATTTG-CTCTCAAATT
1 CTCTCAATTTGCCTCT-AAATT
22847966 CCTTCCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.23, C:0.30, G:0.02, T:0.45
Consensus pattern (23 bp):
CTCTCAATTTGCCTCTAAATTTC
Found at i:22847994 original size:24 final size:25
Alignment explanation
Indices: 22847950--22848014 Score: 93
Period size: 24 Copynumber: 2.7 Consensus size: 25
22847940 ATTTCCTCTC
22847950 AATTTGCTCTCAAAT---TCCTTCCA
1 AATTT-CTCTCAAATCCATCCTTCCA
22847973 AATTTCT-TCAAATCCATCCTTCCA
1 AATTTCTCTCAAATCCATCCTTCCA
22847997 AATTTCTCTCAAATCCAT
1 AATTTCTCTCAAATCCAT
22848015 ATTTAATCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.16
22 2 0.05
23 5 0.13
24 15 0.39
25 10 0.26
ACGTcount: A:0.29, C:0.31, G:0.02, T:0.38
Consensus pattern (25 bp):
AATTTCTCTCAAATCCATCCTTCCA
Found at i:22848104 original size:13 final size:14
Alignment explanation
Indices: 22848078--22848107 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
22848068 TTTTAAATAA
22848078 TTTTTAAAATTTTT
1 TTTTTAAAATTTTT
22848092 TTTTTAAAATTTTT
1 TTTTTAAAATTTTT
22848106 TT
1 TT
22848108 AAACCGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTTAAAATTTTT
Found at i:22849222 original size:7 final size:7
Alignment explanation
Indices: 22849210--22849235 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22849200 TAGTCGATTG
22849210 GTATTTA
1 GTATTTA
22849217 GTATTTA
1 GTATTTA
22849224 GTATTTA
1 GTATTTA
22849231 GTATT
1 GTATT
22849236 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:22850554 original size:22 final size:22
Alignment explanation
Indices: 22850508--22851007 Score: 577
Period size: 22 Copynumber: 23.0 Consensus size: 22
22850498 CCCTCACTTT
*
22850508 AACCCTTAACTTAAAACCCCT-
1 AACCCTTAACTTAAAAACCCTA
* *
22850529 AACCCTTAAATTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTA
*
22850551 AACCCTTAACTTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTA
* * *
22850573 AACCCTTAACCTAAAAAACAT-
1 AACCCTTAACTTAAAAACCCTA
22850594 AACCCTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
22850616 AACCCTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
*
22850638 ACCCCTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
** *
22850660 AACATTTAACTTAAAAA-CCTT
1 AACCCTTAACTTAAAAACCCTA
*
22850681 AACCCTTAACTTAAAAACTCTA
1 AACCCTTAACTTAAAAACCCTA
22850703 AACCCTTAACTTAAAAAACCCTA
1 AACCCTTAACTT-AAAAACCCTA
* * *
22850726 ACCCCTTAAATTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTA
22850748 AACCCTTAACTTAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTA
*
22850769 AACCCTTAACTTAAAAACTCT-
1 AACCCTTAACTTAAAAACCCTA
*
22850790 AACCCTTTAAATTAAAAACCCTA
1 AACCC-TTAACTTAAAAACCCTA
* *
22850813 AACCCTTAAATTAAAAACCTTA
1 AACCCTTAACTTAAAAACCCTA
* *
22850835 AACCCATAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
* *
22850857 AGCCTTTAACTTAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTA
* *
22850878 AACCCTTAACTTTAAAATCCTA
1 AACCCTTAACTTAAAAACCCTA
* * * * *
22850900 ATCCCTTAATTTTAAAATCGT-
1 AACCCTTAACTTAAAAACCCTA
* *
22850921 AACCTTTAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
* * *
22850943 AACCCTTAACTTTAAAATCGT-
1 AACCCTTAACTTAAAAACCCTA
* *
22850964 AACCCTTAAATAAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTA
*
22850985 AACACTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTA
22851007 A
1 A
22851008 CTTAAATATA
Statistics
Matches: 409, Mismatches: 61, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
21 145 0.35
22 240 0.59
23 24 0.06
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.26
Consensus pattern (22 bp):
AACCCTTAACTTAAAAACCCTA
Found at i:22850561 original size:43 final size:44
Alignment explanation
Indices: 22850508--22851007 Score: 568
Period size: 43 Copynumber: 11.5 Consensus size: 44
22850498 CCCTCACTTT
* *
22850508 AACCCTTAACTTAAAACCCCT-AACCCTTAAATTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
* ** * *
22850551 AACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAAACAT-
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
*
22850594 AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
* ** * *
22850638 ACCCCTTAACTTAAAAACCCTAAACATTTAACTTAAAAA-CCTT
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
* *
22850681 AACCCTTAACTTAAAAACTCTAAACCCTTAACTTAAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATT-AAAAACCCTA
* * * *
22850726 ACCCCTTAAATTAAAAACCATAAACCCTTAACTTAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
*
22850769 AACCCTTAACTTAAAAACTCT-AACCCTTTAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAAACCC-TTAAATTAAAAACCCTA
* * *
22850813 AACCCTTAAATTAAAAACCTTAAACCCATAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
* * * * *
22850857 AGCCTTTAACTTAAAAACCCT-AACCCTTAACTTTAAAATCCTA
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
* * * * * *
22850900 ATCCCTTAATTTTAAAATCGT-AACCTTTAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
* * * *
22850943 AACCCTTAACTTTAAAATCGT-AACCCTTAAATAAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
*
22850985 AACACTTAACTTAAAAACCCTAA
1 AACCCTTAACTTAAAAACCCTAA
22851008 CTTAAATATA
Statistics
Matches: 392, Mismatches: 57, Indels: 16
0.84 0.12 0.03
Matches are distributed among these distances:
42 22 0.06
43 213 0.54
44 119 0.30
45 38 0.10
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.26
Consensus pattern (44 bp):
AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTA
Found at i:22850580 original size:65 final size:64
Alignment explanation
Indices: 22850508--22851007 Score: 585
Period size: 65 Copynumber: 7.7 Consensus size: 64
22850498 CCCTCACTTT
* *
22850508 AACCCTTAACTTAAAACCCCTAACCCTTAAATTAAAAACCATAAACCCTTAACTTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACC-TA
* * * *
22850573 AACCCTTAACCTAAAAAACATAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAA-CCTA
* ** * *
22850638 ACCCCTTAACTTAAAAACCCTAAACATTTAACTTAAAAA-CCTTAACCCTTAACTTAAAAACTCT
1 AACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAAC-CT
22850702 A
64 A
*
22850703 AACCCTTAACTTAAAAAACCCTAACCCCTTAAATTAAAAACCATAAACCCTTAACTTAAAAACCC
1 AACCCTTAACTT-AAAAACCCTAA-CCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAA-CC
22850768 T-
63 TA
* *
22850769 AACCCTTAACTTAAAAACTCTAACCCTTTAAATTAAAAACCCTAAACCCTTAAATTAAAAACCTT
1 AACCCTTAACTTAAAAACCCTAACCC-TTAAATTAAAAACCCTAAACCCTTAACTTAAAAACC-T
22850834 A
64 A
* * * * *
22850835 AACCCATAAATTAAAAACCCTAAGCCTTTAACTTAAAAACCCT-AACCCTTAACTTTAAAATCCT
1 AACCCTTAACTTAAAAACCCTAA-CCCTTAAATTAAAAACCCTAAACCCTTAAC-TTAAAAACCT
22850899 A
64 A
* * * * * * * *
22850900 ATCCCTTAATTTTAAAATCGTAACCTTTAAATTAAAAACCCTAAACCCTTAACTTTAAAATCGT-
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAAC-TTAAAAACCTA
* * * *
22850964 AACCCTTAAATAAAAAACCCTAACACTTAACTTAAAAACCCTAA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAA
22851008 CTTAAATATA
Statistics
Matches: 376, Mismatches: 46, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
64 59 0.16
65 200 0.53
66 93 0.25
67 23 0.06
68 1 0.00
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.26
Consensus pattern (64 bp):
AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTA
Found at i:22854626 original size:127 final size:125
Alignment explanation
Indices: 22854190--22854711 Score: 726
Period size: 126 Copynumber: 4.2 Consensus size: 125
22854180 CCCAAACATG
* ** * *
22854190 CTACTGTAGCAAAAGCGCGTCCACGTGGGCTTGATTTCACAAATTATTCTCATAAAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * * * *
22854255 TAGAAGCG-ATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTTTCCAAGAT
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
* * *
22854314 CTACTGTAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCA-AATAGCATCTTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* * * * ** *
22854378 CTTGCAGCATTGTTTTATACTATTTGCTCAGAAATGTCAACTCAAAATTATTTTTTTAGGAC
65 CTTGAAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
* * *
22854440 CTACTGTAGCAAAAGTGCGTCCACGTGGG-AGCAATTTCACAAATTCTTCTCATAAAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCAG-GATTTCACAAATTCTTCTCATAAAGCATCCTG
*
22854504 CTTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
65 CTTGAAGCG-TTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTT-TTCCAAGAC
* *
22854567 CAACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAAAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAAAGCATCCTGC
*
22854632 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
22854692 CTACTGTAGCAAAAGCGCGT
1 CTACTGTAGCAAAAGCGCGT
22854712 ACATGTGGGC
Statistics
Matches: 350, Mismatches: 40, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
123 2 0.01
124 60 0.17
125 29 0.08
126 182 0.52
127 75 0.21
128 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
Found at i:22854698 original size:252 final size:250
Alignment explanation
Indices: 22854190--22854758 Score: 800
Period size: 252 Copynumber: 2.3 Consensus size: 250
22854180 CCCAAACATG
*** * *
22854190 CTACTGTAGCAAAAGCGCGTCCACGTGGGCTTGATTTCACAAATTATTCTCATAAAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * * * *
22854255 TAGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAGTCAAAATTATTTTTCCAAGATCTACTG
66 TTGAAGCGATTTTAAACTATTTGCTCAAAAACCTCAACTCAAAATTATTTTTCCAAGACCAACTG
*
22854320 TAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCTTGCTTGCAG
131 TAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCTTGCTTGAAG
* * ** *
22854385 CATTGTTTTATACTATTTGCTCAGAAATGTCAACTCAAAATTATTTTTTTAGGAC
196 CATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
* *
22854440 CTACTGTAGCAAAAGTGCGTCCACGTGGGAGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
* *
22854505 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGACCAA
66 TTGAAGCG--ATTTTAAACTATTTGCTCAAAAACCTCAACTCAAAATTATTT-TTCCAAGACCAA
* *
22854570 CTGTAGCAAAAGCGCGTCCACGAGGGCAGGATTTCACAAATTCTTCTCATAA-AGCATCTTGCTT
128 CTGTAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCA-AATAGCATCTTGCTT
* *
22854634 GAAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
192 GAAGCATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
* * * * * * *
22854692 CTACTGTAGCAAAAGCGCGTACATGTGGGCGCAACTTCAAAAATCCTTCTGATAAATCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
22854757 TT
66 TT
22854759 TGATTTTATC
Statistics
Matches: 281, Mismatches: 34, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
250 65 0.23
252 139 0.49
253 75 0.27
254 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (250 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGATTTTAAACTATTTGCTCAAAAACCTCAACTCAAAATTATTTTTCCAAGACCAACTG
TAGCAAAAACGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCTTGCTTGAAG
CATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAAGAC
Found at i:22854884 original size:9 final size:9
Alignment explanation
Indices: 22854872--22854905 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
22854862 TATTTTTTTT
22854872 CTAAAAACC
1 CTAAAAACC
*
22854881 CTAAAAATC
1 CTAAAAACC
22854890 CTAAAAACC
1 CTAAAAACC
22854899 CTAAAAA
1 CTAAAAA
22854906 TCATAATGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (9 bp):
CTAAAAACC
Found at i:22854895 original size:18 final size:18
Alignment explanation
Indices: 22854872--22854907 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
22854862 TATTTTTTTT
22854872 CTAAAAACCCTAAAAATC
1 CTAAAAACCCTAAAAATC
22854890 CTAAAAACCCTAAAAATC
1 CTAAAAACCCTAAAAATC
22854908 ATAATGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.17
Consensus pattern (18 bp):
CTAAAAACCCTAAAAATC
Found at i:22862868 original size:23 final size:25
Alignment explanation
Indices: 22862827--22862888 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 25
22862817 ACAATTGGAC
22862827 TTCATATTTTTTTGTTTTTA-GTAAT
1 TTCA-ATTTTTTTGTTTTTATGTAAT
*
22862852 TT-AATTTTTTCTG-TTTTATGTTAT
1 TTCAATTTTTT-TGTTTTTATGTAAT
22862876 TTCAACTTTTTTT
1 TTCAA-TTTTTTT
22862889 TTCTCTCTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
23 12 0.38
24 9 0.28
25 5 0.16
26 6 0.19
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.69
Consensus pattern (25 bp):
TTCAATTTTTTTGTTTTTATGTAAT
Found at i:22866572 original size:51 final size:51
Alignment explanation
Indices: 22866466--22866583 Score: 123
Period size: 51 Copynumber: 2.3 Consensus size: 51
22866456 TGTGTAAATG
* * * * ** *
22866466 TTGACAG-ATGTGTAAATTTTGCAGGTTAAATTTGTTAAATCAGGATCAAG
1 TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATAAAAATCAAA
*
22866516 CTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATTAAAAAT-AAA
1 TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAA-TAAAAATCAAA
* *
22866567 TTGACAAAAGGTGTAAA
1 TTGACAGAATGTGTAAA
22866584 CTTTGAGGGT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
50 6 0.11
51 45 0.82
52 4 0.07
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (51 bp):
TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATAAAAATCAAA
Found at i:22869411 original size:27 final size:27
Alignment explanation
Indices: 22869348--22869410 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
22869338 TTGGTTTAAG
**
22869348 AAAATATTTTATATTTTTAATCTTCAA
1 AAAATATTTTATATTTTTAAAATTCAA
*
22869375 AAAATATTTTCTATTTTTAAAATT-AA
1 AAAATATTTTATATTTTTAAAATTCAA
*
22869401 AAAATTTTTT
1 AAAATATTTT
22869411 TTCAAAGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 11 0.34
27 21 0.66
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (27 bp):
AAAATATTTTATATTTTTAAAATTCAA
Found at i:22873009 original size:44 final size:45
Alignment explanation
Indices: 22872959--22873116 Score: 173
Period size: 44 Copynumber: 3.5 Consensus size: 45
22872949 TTGTTAATTG
22872959 TATTAATTG-TACTAAAATTTATCAAATTATATCAAATTATTAAT
1 TATTAATTGTTACTAAAATTTATCAAATTATATCAAATTATTAAT
* * *
22873003 TATTAATTGTTACTAACATTTTGTTAGTAAAATTAT-T--AATTGTTAATT
1 TATTAATTGTTACTAA-A--AT-TTA-TCAAATTATATCAAATTATTAA-T
*
22873051 GTATTAATTGTTAGTAAAA-TTATCAAATTATATCAAATTATTAAT
1 -TATTAATTGTTACTAAAATTTATCAAATTATATCAAATTATTAAT
*
22873096 TATTAATTGTTACTAACATTT
1 TATTAATTGTTACTAAAATTT
22873117 TGTTAGTAAA
Statistics
Matches: 93, Mismatches: 9, Indels: 23
0.74 0.07 0.18
Matches are distributed among these distances:
43 8 0.09
44 29 0.31
45 9 0.10
46 9 0.10
47 8 0.09
48 3 0.03
49 19 0.20
50 8 0.09
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.48
Consensus pattern (45 bp):
TATTAATTGTTACTAAAATTTATCAAATTATATCAAATTATTAAT
Found at i:22873020 original size:93 final size:92
Alignment explanation
Indices: 22872923--22873154 Score: 428
Period size: 93 Copynumber: 2.5 Consensus size: 92
22872913 TTGTAAATTT
*
22872923 TAACATTTTGCTAGTAAAATTATTAATTGTTAATTGTATTAATTGTACTAAAATTTATCAAATTA
1 TAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGTACTAAAA-TTATCAAATTA
22872988 TATCAAATTATTAATTATTAATTGTTAC
65 TATCAAATTATTAATTATTAATTGTTAC
*
22873016 TAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGTTAGTAAAATTATCAAATTA
1 TAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTG-TACTAAAATTATCAAATTA
22873081 TATCAAATTATTAATTATTAATTGTTAC
65 TATCAAATTATTAATTATTAATTGTTAC
22873109 TAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGT
1 TAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGT
22873155 GTAACAAAAT
Statistics
Matches: 136, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
92 1 0.01
93 128 0.94
94 7 0.05
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.49
Consensus pattern (92 bp):
TAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGTACTAAAATTATCAAATTAT
ATCAAATTATTAATTATTAATTGTTAC
Found at i:22873042 original size:33 final size:33
Alignment explanation
Indices: 22873000--22873140 Score: 118
Period size: 33 Copynumber: 4.5 Consensus size: 33
22872990 TCAAATTATT
22873000 AATTATTAATTGTTACTAACATTTTGTTAGTAA
1 AATTATTAATTGTTACTAACATTTTGTTAGTAA
* ***
22873033 AATTATTAATTGTTAATTGTATTAATTGTTAGTAA
1 AATTATTAATTGTTACTAACATT--TTGTTAGTAA
* * * ** *
22873068 AATTATCAA--ATTA-TATCA---AATTA-T-T
1 AATTATTAATTGTTACTAACATTTTGTTAGTAA
22873093 AATTATTAATTGTTACTAACATTTTGTTAGTAA
1 AATTATTAATTGTTACTAACATTTTGTTAGTAA
22873126 AATTATTAATTGTTA
1 AATTATTAATTGTTA
22873141 ATTGTATTAA
Statistics
Matches: 80, Mismatches: 18, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
25 8 0.10
26 1 0.01
27 6 0.08
28 4 0.05
31 3 0.04
32 3 0.04
33 37 0.46
35 18 0.22
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.49
Consensus pattern (33 bp):
AATTATTAATTGTTACTAACATTTTGTTAGTAA
Found at i:22873047 original size:19 final size:19
Alignment explanation
Indices: 22873023--22873073 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
22873013 TACTAACATT
22873023 TTGTTAGTAAAATTATTAA
1 TTGTTAGTAAAATTATTAA
*
22873042 TTG-T--T-AATTGTATTAA
1 TTGTTAGTAAAAT-TATTAA
22873058 TTGTTAGTAAAATTAT
1 TTGTTAGTAAAATTAT
22873074 CAAATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
15 3 0.12
16 10 0.40
17 1 0.04
18 1 0.04
19 7 0.28
20 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (19 bp):
TTGTTAGTAAAATTATTAA
Found at i:22874645 original size:21 final size:21
Alignment explanation
Indices: 22874619--22874660 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22874609 TTATATATAC
22874619 AATATAATGTAAATATTTAAA
1 AATATAATGTAAATATTTAAA
* *
22874640 AATATATTGTATATATTTAAA
1 AATATAATGTAAATATTTAAA
22874661 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
AATATAATGTAAATATTTAAA
Found at i:22875365 original size:18 final size:17
Alignment explanation
Indices: 22875344--22875378 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
22875334 GAGAATTGAG
22875344 AAAAATATATATTATTTC
1 AAAAATATATATT-TTTC
*
22875362 AAAATTATATATTTTTC
1 AAAAATATATATTTTTC
22875379 CATCTTTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (17 bp):
AAAAATATATATTTTTC
Found at i:22882119 original size:18 final size:20
Alignment explanation
Indices: 22882096--22882138 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
22882086 CATATACATG
22882096 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
22882114 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
22882134 CATAC
1 CATAC
22882139 TTATACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
19 1 0.04
20 12 0.52
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:22884466 original size:19 final size:19
Alignment explanation
Indices: 22884442--22884486 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
22884432 TTTTTCTTTT
*
22884442 TGCATT-CATTTCATACATA
1 TGCATTACATTGCAT-CATA
22884461 TGCATTACATTGCATCATA
1 TGCATTACATTGCATCATA
*
22884480 TGAATTA
1 TGCATTA
22884487 GATTTTCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (19 bp):
TGCATTACATTGCATCATA
Found at i:22888557 original size:24 final size:24
Alignment explanation
Indices: 22888525--22888582 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
22888515 ATGTCCCTAA
22888525 ATTACAGTGGACTGAACCTTGAAG
1 ATTACAGTGGACTGAACCTTGAAG
* * *
22888549 ATTATAGTGGATTGAACTTTGAAG
1 ATTACAGTGGACTGAACCTTGAAG
22888573 ATTACAGTGG
1 ATTACAGTGG
22888583 GGCAGTCCGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (24 bp):
ATTACAGTGGACTGAACCTTGAAG
Found at i:22888951 original size:50 final size:50
Alignment explanation
Indices: 22888885--22889763 Score: 561
Period size: 50 Copynumber: 17.6 Consensus size: 50
22888875 GCAGTGGAGC
* * * *
22888885 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
** ** * * * **
22888935 AGATTGAAGCCGCAACGGTGAATCTTACTTCCATGGCGA-TGCAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGAC-ATTGCAATTGAAA
* * * *
22888985 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
** * * * * ** * * * **
22889035 AGATTGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGATC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
* ** * *
22889085 AGATTGAAGCTACAACAGTGAAT-TTTGTTCCCCGGCATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
** * * * * ** * * * **
22889134 AGATTGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGATC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
** *
22889184 AGATTGAAGCTACAACGGTGAAT-TTTGTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
* * ** * * **
22889233 AGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA-TGCAGTAGAGT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTGAAA
* * * * *
22889283 AGATTAAAGCTACGACGGTGAATCTTGCTTCCCCAACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
** ** * **
22889333 AGATTGAAGCCGCAACGGTGAATCTTACTTCCATGGCGA-TGC-ATTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGAC-ATTGCAATT-GAAA
* * * *
22889383 AGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
** * * * * ** * * * **
22889433 AGATTGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGATC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
** *
22889483 AGATTGAAGCTACAACGGTGAAT-TTTGTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
* * * ** * * **
22889532 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGGTGA-TGCAGTGGAGT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTGAAA
* * * *
22889582 AGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
** * ** * * **
22889632 AGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGTGA-TGCAGTGGAGT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTGAAA
* * * *
22889682 AGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
***
22889732 AGATTGAAGCCGGAACGGTGAATCTTACTTCC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC
22889764 TTGGTGGTGC
Statistics
Matches: 588, Mismatches: 226, Indels: 30
0.70 0.27 0.04
Matches are distributed among these distances:
49 114 0.19
50 463 0.79
51 11 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTGAAA
Found at i:22889035 original size:100 final size:100
Alignment explanation
Indices: 22888874--22889829 Score: 1333
Period size: 100 Copynumber: 9.6 Consensus size: 100
22888864 TCCTTGGCAG
* *
22888874 TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
*
22888939 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* *
22888974 TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * *
22889039 TGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGG
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * * * * *
22889074 TACAGTGGATCAGATTGAAGCTACAACAGTGAATTTTG-TTCCCCGGCATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * *
22889138 TGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGG
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * * *
22889173 TACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTG-TTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* *
22889237 TGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * * * *
22889272 TGCAGTAGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCAACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
*
22889337 TGAAGCCGCAACGGTGAATCTTACTTCCATGGCGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* *
22889372 TGCATTGGAGCAGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * *
22889437 TGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGG
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * * *
22889472 TACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTG-TTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
** * * *
22889536 TGAAGCTACAATGGCGAATCTTACTTCCCTGGTGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* *
22889571 TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
*
22889636 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGTGA
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
* * *
22889671 TGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* * * *
22889736 TGAAGCCGGAACGGTGAATCTTACTTCCTTGGTGG
66 TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
** * * **** *
22889771 TGCAGCAGAACTGATTAAAGCTACAACAACAAATCTTGCTTCCCCGACATTGCAGTTAA
1 TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAA
22889830 TCAGACTTAA
Statistics
Matches: 778, Mismatches: 76, Indels: 4
0.91 0.09 0.00
Matches are distributed among these distances:
99 271 0.35
100 507 0.65
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (100 bp):
TGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
TGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGA
Found at i:22889495 original size:299 final size:299
Alignment explanation
Indices: 22888862--22889763 Score: 1446
Period size: 299 Copynumber: 3.0 Consensus size: 299
22888852 ATGAAGTTAC
* * * * * * *
22888862 CTTCCTTGGCAGTGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
1 CTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTG-TTCCCCGACATTGC
* * * * *
22888927 AATTTAAAAGATTGAAGCCGCAACGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAA
65 AATTAAAAAGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGATGCAGTGGAGTAGATTAA
* * * *
22888992 AGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAATGGCGAA
130 AGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGTGAA
* * * * * *
22889057 TCTTACTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACAGTGAATTTTG-TTCCCCGGC
195 TCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGAC
22889121 ATTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
260 ATTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
22889161 CTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTGTTCCCCGACATTGCA
1 CTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTGTTCCCCGACATTGCA
*
22889226 ATTAAAAAGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGATGCAGTAGAGTAGATTAAA
66 ATTAAAAAGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGATGCAGTGGAGTAGATTAAA
*
22889291 GCTACGACGGTGAATCTTGCTTCCCCAACATTGCAATTTAAAAGATTGAAGCCGCAACGGTGAAT
131 GCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGTGAAT
* *
22889356 CTTACTTCCATGGCGATGCATTGGAGCAGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGACA
196 CTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGACA
22889421 TTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
261 TTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
22889460 CTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTGTTCCCCGACATTGCA
1 CTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTGTTCCCCGACATTGCA
* * *
22889525 ATTAAAAAGATTGAAGCTACAATGGCGAATCTTACTTCCCTGGTGATGCAGTGGAGTAGATTAAA
66 ATTAAAAAGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGATGCAGTGGAGTAGATTAAA
*
22889590 GCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGTGAAT
131 GCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGTGAAT
* * * *
22889655 CTTACTTCCCTGGTGATGCAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACA
196 CTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGACA
* * * *
22889720 TTGCAATTTAAAAGATTGAAGCCGGAACGGTGAATCTTA
261 TTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
22889759 CTTCC
1 CTTCC
22889764 TTGGTGGTGC
Statistics
Matches: 560, Mismatches: 42, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
298 181 0.32
299 379 0.68
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (299 bp):
CTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACGGTGAATTTTGTTCCCCGACATTGCA
ATTAAAAAGATTGAAGCTGCAACGGTGAATCTTACTTCCCTGGTGATGCAGTGGAGTAGATTAAA
GCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGTGAAT
CTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATTTTGCTTCCCCGACA
TTGCAATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
Found at i:22890001 original size:127 final size:128
Alignment explanation
Indices: 22889844--22890800 Score: 1016
Period size: 127 Copynumber: 7.3 Consensus size: 128
22889834 ACTTAAAATA
* * * * *
22889844 ACAGATATTATCTTCCTAAGCAGTAGTGGAGCCGATCGCTTCCAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
22889909 GTGGAGCAGACG-AAAAAAATCAATCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
22889971 ACAAATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTGAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* * *
22890036 GTGGAGCAGATGAAAAAAAAACCAATCCTATCTCCCTGAAGTTGTAGTAGAGTGGATTAAAACC
66 GTGGAGCAGACG-AAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
22890100 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
22890165 GTTGAGCAGACG-AAAAAAACCAACCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
22890227 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCATATCGCATCCAGTCTTATCTCCTTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
22890292 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
22890355 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGCATCCAGTCTTATCTCTCTAAGCA-TC
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGT-
* * * * * ** *** *
22890419 CAGTGTTATCTCCCTAAGCAGTAGTGAAGCAGATGAAA--AAACCAATCCTATCT--CCCTGAAG
65 -AGTG----------GAGCAG-A-CGAA--A-A-AAAACCAATCCTAT-CTCCCTGAAGTTGCAG
* *
22890480 TTGCAATGGAGTGGATTAAAACC
112 -TGGAGT-G----GATTAAAACC
* *
22890503 ACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
22890568 GTGGAGCAGAC-AGAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC
66 GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* * ** * * ** *
22890630 ATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCATATCAAGCCTTATCTCCCTGAAGTTGC
1 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCT-AAGCAGT
** * * ** * * **
22890695 AGCAGAGCAGGCTG--AAGAAACCAATCCTATCTTTCTGAAGTTGCAGTGAAGCGGATTAAAATG
65 AGTGGAGCAGAC-GAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
** * * * * *
22890758 ATGGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATC
1 ACAGATCTTATCTCCCT-AAGTAGTAGTGGAGCAGATCGCATC
22890801 AGACTTTATG
Statistics
Matches: 705, Mismatches: 88, Indels: 72
0.82 0.10 0.08
Matches are distributed among these distances:
127 250 0.35
128 178 0.25
129 141 0.20
130 3 0.00
131 6 0.01
132 10 0.01
133 4 0.01
134 1 0.00
136 1 0.00
137 5 0.01
139 5 0.01
140 1 0.00
141 3 0.00
142 4 0.01
143 11 0.02
144 6 0.01
145 3 0.00
147 4 0.01
148 68 0.10
149 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (128 bp):
ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
GTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
Found at i:22890026 original size:40 final size:40
Alignment explanation
Indices: 22889851--22890414 Score: 211
Period size: 40 Copynumber: 13.3 Consensus size: 40
22889841 ATAACAGATA
* * * **
22889851 TTATCTTCCTAAGCAGTAGTGGAGCCGATCGCTTCCAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
* *
22889891 TTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAAAAAT-CAATC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCG-----AATCCAGTC
* * * ** ** * *
22889934 CTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCACAAATC
1 TTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAATC-C-AGTC
*
22889978 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
* * * *
22890018 TTATCTCCCTGAGCAGTAGTGGAGCAGAT-GAAAAAAAAACCAATC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCG------AATCCAGTC
* * * ** ** *
22890063 CTATCTCCCTGAAGTTGTAGTAGAGTGGATTAAAACCACAGATC
1 TTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAATC-CAG-TC
* * *
22890107 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
* * * **
22890147 TTATCTCCCTAAGCAGTAGTTGAGCAGA-CGAAAAAAACCAACC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCG----AATCCAGTC
* * * ** ** *
22890190 CTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATC
1 TTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAATC-CAG-TC
* *
22890234 TTATCTCCCTAAGTAGTAGTGGAGCATATCGCATCCAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
* * * *
22890274 TTATCTCCTTAAGCAGTAGTGGAGCAGA-CGAAAAAAAACCAATC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCG-----AATCCAGTC
* * * ** ** *
22890318 CTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATC
1 TTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAATC-CAG-TC
* *
22890362 TTATCTCCCTAAGTAGTAGTGGAGTAGATCGCATCCAGTC
1 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
*
22890402 TTATCTCTCTAAG
1 TTATCTCCCTAAG
22890415 CATCCAGTGT
Statistics
Matches: 379, Mismatches: 104, Indels: 82
0.67 0.18 0.15
Matches are distributed among these distances:
39 7 0.02
40 126 0.33
41 11 0.03
42 21 0.06
43 88 0.23
44 85 0.22
45 28 0.07
46 12 0.03
47 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (40 bp):
TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAATCCAGTC
Found at i:22890420 original size:22 final size:22
Alignment explanation
Indices: 22890392--22890438 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
22890382 GGAGTAGATC
*
22890392 GCATCCAGTCTTATCTCTCTAA
1 GCATCCAGTCTTATCTCCCTAA
*
22890414 GCATCCAGTGTTATCTCCCTAA
1 GCATCCAGTCTTATCTCCCTAA
22890436 GCA
1 GCA
22890439 GTAGTGAAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.32
Consensus pattern (22 bp):
GCATCCAGTCTTATCTCCCTAA
Found at i:22890539 original size:148 final size:149
Alignment explanation
Indices: 22890264--22890564 Score: 505
Period size: 148 Copynumber: 2.0 Consensus size: 149
22890254 GGAGCATATC
* *
22890264 GCATCCAGTCTTATCTCCTTAAGCAGTAGTGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTG
1 GCATCCAGTCTTATCTCCCTAAGCAGTAGTGAAGCAGACG-AAAAAAACCAATCCTATCTCCCTG
* * * *
22890329 AAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGC
65 AAGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGC
*
22890394 ATCCAGTCTTATCTCTCTAA
130 ATCCAGTCTTATCTCCCTAA
* *
22890414 GCATCCAGTGTTATCTCCCTAAGCAGTAGTGAAGCAGATG-AAAAAACCAATCCTATCTCCCTGA
1 GCATCCAGTCTTATCTCCCTAAGCAGTAGTGAAGCAGACGAAAAAAACCAATCCTATCTCCCTGA
22890478 AGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCA
66 AGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCA
22890543 TCCAGTCTTATCTCCCTAA
131 TCCAGTCTTATCTCCCTAA
22890562 GCA
1 GCA
22890565 GTAGTGGAGC
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
148 106 0.75
150 36 0.25
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (149 bp):
GCATCCAGTCTTATCTCCCTAAGCAGTAGTGAAGCAGACGAAAAAAACCAATCCTATCTCCCTGA
AGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCA
TCCAGTCTTATCTCCCTAA
Found at i:22890642 original size:44 final size:43
Alignment explanation
Indices: 22890467--22890790 Score: 141
Period size: 44 Copynumber: 7.6 Consensus size: 43
22890457 AAACCAATCC
* *
22890467 TATCTCCCTGAAGTTGCAATGGAGTGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
** * * * *** *
22890511 TATCTCCCT-AAGCAGTAGTGAAGCAGATCGCATCC-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
** * * *
22890551 TATCTCCCT-AAGCAGTAGTGGAGCAGACAGA-AAAAACC-A-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGC-G---GATTAAAACCAAGATCT
22890594 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
** * * * * * *
22890638 TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCATATCAAG-CCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
** * * *
22890678 TATCTCCCTGAAGTTGCAGCAGAGCAGGCTGAAGAAACC-A-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGC-GGAT-TA-AAACCAAGATCT
** * ** *
22890722 TATCTTTCTGAAGTTGCAGTGAAGCGGATTAAAATGATGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
* *
22890766 TATCTCTCTGAAGTTGCAGTAGAGC
1 TATCTCCCTGAAGTTGCAGTGGAGC
22890791 AGATCACATC
Statistics
Matches: 203, Mismatches: 58, Indels: 38
0.68 0.19 0.13
Matches are distributed among these distances:
40 39 0.19
41 23 0.11
42 7 0.03
43 49 0.24
44 82 0.40
45 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
Found at i:22890680 original size:40 final size:40
Alignment explanation
Indices: 22890509--22890686 Score: 126
Period size: 40 Copynumber: 4.3 Consensus size: 40
22890499 AACCACAGAT
* ** * *
22890509 CTTATCTCCCTAAGCAGTAGTGAAGCAGATCGCATCCAGT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
* *
22890549 CTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAA-AAAAC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCA-AATCAAGC
** * * * * *
22890588 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGAT
1 C--T--TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCAAATCA-AG-C
*
22890636 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCATATCAAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
22890676 CTTATCTCCCT
1 CTTATCTCCCT
22890687 GAAGTTGCAG
Statistics
Matches: 104, Mismatches: 23, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
39 3 0.03
40 40 0.38
41 3 0.03
42 5 0.05
43 23 0.22
44 23 0.22
45 2 0.02
46 3 0.03
47 1 0.01
48 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (40 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
Found at i:22891585 original size:421 final size:421
Alignment explanation
Indices: 22890801--22891642 Score: 1641
Period size: 421 Copynumber: 2.0 Consensus size: 421
22890791 AGATCACATC
22890801 AGACTTTATGCAGTAAAGCAAGTTGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCA
1 AGACTTTATGCAGTAAAGCAAGTTGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCA
22890866 GACTAAAACCACAAGTCTCGTCCCCATGGAGTTGCAGCAGAGTAGATTGAAGTCATATCTCTCTA
66 GACTAAAACCACAAGTCTCGTCCCCATGGAGTTGCAGCAGAGTAGATTGAAGTCATATCTCTCTA
22890931 AAGATGCCGTGAAGTGGATTAAAGCAACAAGATGCAGTGGATTGGAATGGGGCAACTTGAAGAAG
131 AAGATGCCGTGAAGTGGATTAAAGCAACAAGATGCAGTGGATTGGAATGGGGCAACTTGAAGAAG
22890996 AAAGGCACCAAGAAGTCAAGACTCGACGAGACCGGGCAAAATTGGTCTTTCTTAGTTTTTGCTCT
196 AAAGGCACCAAGAAGTCAAGACTCGACGAGACCGGGCAAAATTGGTCTTTCTTAGTTTTTGCTCT
22891061 ATTCTCGTTACACGACAATGAGCAAAGAGGGGCAGCTGTAGTAGCCCAATTTTTGCCCGGGCTAA
261 ATTCTCGTTACACGACAATGAGCAAAGAGGGGCAGCTGTAGTAGCCCAATTTTTGCCCGGGCTAA
22891126 AAGCCCAAAAATAAACAAATAAGACCCAAAACAAAAATAAACCCACTACTCAAATTACAATACCA
326 AAGCCCAAAAATAAACAAATAAGACCCAAAACAAAAATAAACCCACTACTCAAATTACAATA-CA
***
22891191 -GCCCATAAACCAAAACCCTAAGGCCCAAATA
390 TAAACATAAACCAAAACCCTAAGGCCCAAATA
22891222 AGACTTTATGCAGTAAAGCAAGTTGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCA
1 AGACTTTATGCAGTAAAGCAAGTTGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCA
22891287 GACTAAAACCACAAGTCTCGTCCCCATGGAGTTGCAGCAGAGTAGATTGAAGTCATATCTCTCTA
66 GACTAAAACCACAAGTCTCGTCCCCATGGAGTTGCAGCAGAGTAGATTGAAGTCATATCTCTCTA
22891352 AAGATGCCGTGAAGTGGATTAAAGCAACAAGATGCAGTGGATTGGAATGGGGCAACTTGAAGAAG
131 AAGATGCCGTGAAGTGGATTAAAGCAACAAGATGCAGTGGATTGGAATGGGGCAACTTGAAGAAG
22891417 AAAGGCACCAAGAAGTCAAGACTCGACGAGACCGGGCAAAATTGGTCTTTCTTAGTTTTTGCTCT
196 AAAGGCACCAAGAAGTCAAGACTCGACGAGACCGGGCAAAATTGGTCTTTCTTAGTTTTTGCTCT
22891482 ATTCTCGTTACACGACAATGAGCAAAGAGGGGCAGCTGTAGTAGCCCAATTTTTGCCCGGGCTAA
261 ATTCTCGTTACACGACAATGAGCAAAGAGGGGCAGCTGTAGTAGCCCAATTTTTGCCCGGGCTAA
22891547 AAGCCCAAAAATAAACAAATAAGACCCAAAACAAAAATAAACCCACTACTCAAATTACAATACAT
326 AAGCCCAAAAATAAACAAATAAGACCCAAAACAAAAATAAACCCACTACTCAAATTACAATACAT
22891612 AAACATAAACCAAAACCCTAAGGCCCAAATA
391 AAACATAAACCAAAACCCTAAGGCCCAAATA
22891643 GCCCAAAATC
Statistics
Matches: 417, Mismatches: 3, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
420 2 0.00
421 415 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (421 bp):
AGACTTTATGCAGTAAAGCAAGTTGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCA
GACTAAAACCACAAGTCTCGTCCCCATGGAGTTGCAGCAGAGTAGATTGAAGTCATATCTCTCTA
AAGATGCCGTGAAGTGGATTAAAGCAACAAGATGCAGTGGATTGGAATGGGGCAACTTGAAGAAG
AAAGGCACCAAGAAGTCAAGACTCGACGAGACCGGGCAAAATTGGTCTTTCTTAGTTTTTGCTCT
ATTCTCGTTACACGACAATGAGCAAAGAGGGGCAGCTGTAGTAGCCCAATTTTTGCCCGGGCTAA
AAGCCCAAAAATAAACAAATAAGACCCAAAACAAAAATAAACCCACTACTCAAATTACAATACAT
AAACATAAACCAAAACCCTAAGGCCCAAATA
Found at i:22892761 original size:18 final size:20
Alignment explanation
Indices: 22892738--22892780 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
22892728 CATATACATG
22892738 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
22892756 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
22892776 CATAC
1 CATAC
22892781 TTATACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
19 1 0.04
20 12 0.52
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:22894400 original size:17 final size:17
Alignment explanation
Indices: 22894378--22894415 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
22894368 TGAATAGTTA
22894378 AAATAATTTTTTTCGTG
1 AAATAATTTTTTTCGTG
22894395 AAATAATTTTTTTCGTG
1 AAATAATTTTTTTCGTG
22894412 AAAT
1 AAAT
22894416 TGCGTATACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (17 bp):
AAATAATTTTTTTCGTG
Found at i:22894790 original size:25 final size:25
Alignment explanation
Indices: 22894733--22894790 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
22894723 GTAAGTGTAC
* *
22894733 ATATATAT-TACAAAAAGTATGTGT
1 ATATATATATACAAAAAATATATGT
*
22894757 GTA-AGTATATACAAAAAATATATGT
1 ATATA-TATATACAAAAAATATATGT
22894782 ATATATATA
1 ATATATATA
22894791 AAAAAACGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
23 1 0.04
24 5 0.19
25 20 0.74
26 1 0.04
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.36
Consensus pattern (25 bp):
ATATATATATACAAAAAATATATGT
Found at i:22894806 original size:22 final size:23
Alignment explanation
Indices: 22894762--22894808 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
22894752 TGTGTGTAAG
* *
22894762 TATATACAAAAAATATATGTATA
1 TATATACAAAAAACATATATATA
*
22894785 TATATA-AAAAAACGTATATATA
1 TATATACAAAAAACATATATATA
22894807 TA
1 TA
22894809 AGGGCAATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (23 bp):
TATATACAAAAAACATATATATA
Found at i:22897860 original size:911 final size:910
Alignment explanation
Indices: 22896100--22897920 Score: 3633
Period size: 911 Copynumber: 2.0 Consensus size: 910
22896090 ATAGGCTATA
22896100 GTAATTAAATAAAATAATAATAATAATAAATATGGTTTTTTTAATTTAAGGGAATCTGTTTGACT
1 GTAATTAAATAAAATAATAATAATAATAAATATGGTTTTTTTAATTTAAGGGAATCTGTTTGACT
22896165 TATCCACAAATTTAATTATTTGCAATTTGAAAAGAATAAATATTATTAAATGAAATAAAAAAAAC
66 TATCCACAAATTTAATTATTTGCAATTTGAAAAGAATAAATATTATTAAATGAAATAAAAAAAAC
22896230 AATATTTTTGTGCCACTCCACTTTGTCATTGAAAATTAAATATAAATTAATAAAAGTGATGGTTA
131 AATATTTTTGTGCCACTCCACTTTGTCATTGAAAATTAAATATAAATTAATAAAAGTGATGGTTA
22896295 AAAATAGTAATTTTTAGGTTTCTTTAATTATATAATTTGATTTTATCAATATGTATCCACCCAGG
196 AAAATAGTAATTTTTAGGTTTCTTTAATTATATAATTTGATTTTATCAATATGTATCCACCCAGG
22896360 GGAAGTGCTGAGGTCAATTTTTAATATTTTATTTATTTAAAAACCTGCAATATATATAAAATTTT
261 GGAAGTGCTGAGGTCAATTTTTAATATTTTATTTATTTAAAAACCTGCAATATATATAAAATTTT
22896425 TTGGTTCATCAATTTTTTTAATTTTTTTGAAAATATTATAATTTCTTAAACAATGAAACTTCAGT
326 TTGGTTCATCAATTTTTTTAATTTTTTTGAAAATATTATAATTTCTTAAACAATGAAACTTCAGT
22896490 AATTATAAAATTTCTTCAAAAGATAATTATTTTTTATTATTATTTTATAAATTATTGATAATTTA
391 AATTATAAAATTTCTTCAAAAGATAATTATTTTTTATTATTATTTTATAAATTATTGATAATTTA
22896555 ATGATATTTTCATAATAAAATTTTCCCTAAATCGAGCTAAAATTTAGATAGCAAAAAGAAATTGC
456 ATGATATTTTCATAATAAAATTTTCCCTAAATCGAGCTAAAATTTAGATAGCAAAAAGAAATTGC
22896620 AAAAAAGATTTTCTTGCTTAGTGAAATCTAACTTATTTGACATTTAAGGAGGTTTTTTTATTTAA
521 AAAAAAGATTTTCTTGCTTAGTGAAATCTAACTTATTTGACATTTAAGGAGGTTTTTTTATTTAA
22896685 ACCAAATAAAATATTATTAAATTAAAGTTAAATCAAAGTTTATCCCAATTTTGGAAAACTATTCG
586 ACCAAATAAAATATTATTAAATTAAAGTTAAATCAAAGTTTATCCCAATTTTGGAAAACTATTCG
22896750 GACCGAAAAATTAAATATTTGTGTTTTTTTTATTATAATTAAAGGTGAGTAAAATTTGATTCGAT
651 GACCGAAAAATTAAATATTTGTGTTTTTTTTATTATAATTAAAGGTGAGTAAAATTTGATTCGAT
22896815 TCGAAAAAAAATTTCGAATTATTCAAATTATTCGAGTTTTAAGTTCAAATCAAGTTGAGGTTTAC
716 TCGAAAAAAAATTTCGAATTATTCAAATTATTCGAGTTTTAAGTTCAAATCAAGTTGAGGTTTAC
22896880 AATTCGAATAACTCTAATAATTTGAATAATAAATTAGTGTAAATATCCTTTTGGTCCCTGTCAAG
781 AATTCGAATAACTCTAATAATTTGAATAATAAATTAGTGTAAATATCCTTTTGGTCCCTGTCAAG
22896945 TTTCAAAATAAGCAAATTAGCCTTTCTCTCAACAAAAATTACAAAAAAAAAATCAAAATAATTTT
846 TTTCAAAATAAGCAAATTAGCCTTTCTCTCAACAAAAATTAC-AAAAAAAAATCAAAATAATTTT
22897010 C
910 C
22897011 GTAATTAAATAAAATAATAATAATAATAAATATGGTTTTTTTAATTTAAGGGAATCTGTTTGACT
1 GTAATTAAATAAAATAATAATAATAATAAATATGGTTTTTTTAATTTAAGGGAATCTGTTTGACT
22897076 TATCCACAAATTTAATTATTTGCAATTTGAAAAGAATAAATATTATTAAATGAAATAAAAAAAAC
66 TATCCACAAATTTAATTATTTGCAATTTGAAAAGAATAAATATTATTAAATGAAATAAAAAAAAC
22897141 AATATTTTTGTGCCACTCCACTTTGTCATTGAAAATTAAATATAAATTAATAAAAGTGATGGTTA
131 AATATTTTTGTGCCACTCCACTTTGTCATTGAAAATTAAATATAAATTAATAAAAGTGATGGTTA
22897206 AAAATAGTAATTTTTAGGTTTCTTTAATTATATAATTTGATTTTATCAATATGTATCCACCCAGG
196 AAAATAGTAATTTTTAGGTTTCTTTAATTATATAATTTGATTTTATCAATATGTATCCACCCAGG
22897271 GGAAGTGCTGAGGTCAATTTTTAATATTTTATTTATTTAAAAACCTGCAATATATATAAAATTTT
261 GGAAGTGCTGAGGTCAATTTTTAATATTTTATTTATTTAAAAACCTGCAATATATATAAAATTTT
22897336 TTGGTTCATCAATTTTTTTAATTTTTTTGAAAATATTATAATTTCTTAAACAATGAAACTTCAGT
326 TTGGTTCATCAATTTTTTTAATTTTTTTGAAAATATTATAATTTCTTAAACAATGAAACTTCAGT
22897401 AATTATAAAATTTCTTCAAAAGATAATTATTTTTTATTATTATTTTATAAATTATTGATAATTTA
391 AATTATAAAATTTCTTCAAAAGATAATTATTTTTTATTATTATTTTATAAATTATTGATAATTTA
22897466 ATGATATTTTCATAATAAAATTTTCCCTAAATCGAGCTAAAATTTAGATAGCAAAAAGAAATTGC
456 ATGATATTTTCATAATAAAATTTTCCCTAAATCGAGCTAAAATTTAGATAGCAAAAAGAAATTGC
22897531 AAAAAAGATTTTCTTGCTTAGTGAAATCTAACTTATTTGACATTTAAGGAGGTTTTTTTATTTAA
521 AAAAAAGATTTTCTTGCTTAGTGAAATCTAACTTATTTGACATTTAAGGAGGTTTTTTTATTTAA
22897596 ACCAAATAAAATATTATTAAATTAAAGTTAAATCAAAGTTTATCCCAATTTTGGAAAACTATTCG
586 ACCAAATAAAATATTATTAAATTAAAGTTAAATCAAAGTTTATCCCAATTTTGGAAAACTATTCG
22897661 GACCGAAAAATTAAATATTTGTGTTTTTTTTATTATAATTAAAGGTGAGTAAAATTTGATTCGAT
651 GACCGAAAAATTAAATATTTGTGTTTTTTTTATTATAATTAAAGGTGAGTAAAATTTGATTCGAT
22897726 TCGAAAAAAAATTTCGAATTATTCAAATTATTCGAGTTTTAAGTTCAAATCAAGTTGAGGTTTAC
716 TCGAAAAAAAATTTCGAATTATTCAAATTATTCGAGTTTTAAGTTCAAATCAAGTTGAGGTTTAC
22897791 AATTCGAATAACTCTAATAATTTGAATAATAAATTAGTGTAAATATCCTTTTGGTCCCTGTCAAG
781 AATTCGAATAACTCTAATAATTTGAATAATAAATTAGTGTAAATATCCTTTTGGTCCCTGTCAAG
22897856 TTTCAAAATAAGCAAATTAGCCTTTCTCTCAACAAAAATTACAAAAAAAAATCAAAATAATTTTC
846 TTTCAAAATAAGCAAATTAGCCTTTCTCTCAACAAAAATTACAAAAAAAAATCAAAATAATTTTC
22897921 AAAATTTTAA
Statistics
Matches: 910, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
910 23 0.03
911 887 0.97
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (910 bp):
GTAATTAAATAAAATAATAATAATAATAAATATGGTTTTTTTAATTTAAGGGAATCTGTTTGACT
TATCCACAAATTTAATTATTTGCAATTTGAAAAGAATAAATATTATTAAATGAAATAAAAAAAAC
AATATTTTTGTGCCACTCCACTTTGTCATTGAAAATTAAATATAAATTAATAAAAGTGATGGTTA
AAAATAGTAATTTTTAGGTTTCTTTAATTATATAATTTGATTTTATCAATATGTATCCACCCAGG
GGAAGTGCTGAGGTCAATTTTTAATATTTTATTTATTTAAAAACCTGCAATATATATAAAATTTT
TTGGTTCATCAATTTTTTTAATTTTTTTGAAAATATTATAATTTCTTAAACAATGAAACTTCAGT
AATTATAAAATTTCTTCAAAAGATAATTATTTTTTATTATTATTTTATAAATTATTGATAATTTA
ATGATATTTTCATAATAAAATTTTCCCTAAATCGAGCTAAAATTTAGATAGCAAAAAGAAATTGC
AAAAAAGATTTTCTTGCTTAGTGAAATCTAACTTATTTGACATTTAAGGAGGTTTTTTTATTTAA
ACCAAATAAAATATTATTAAATTAAAGTTAAATCAAAGTTTATCCCAATTTTGGAAAACTATTCG
GACCGAAAAATTAAATATTTGTGTTTTTTTTATTATAATTAAAGGTGAGTAAAATTTGATTCGAT
TCGAAAAAAAATTTCGAATTATTCAAATTATTCGAGTTTTAAGTTCAAATCAAGTTGAGGTTTAC
AATTCGAATAACTCTAATAATTTGAATAATAAATTAGTGTAAATATCCTTTTGGTCCCTGTCAAG
TTTCAAAATAAGCAAATTAGCCTTTCTCTCAACAAAAATTACAAAAAAAAATCAAAATAATTTTC
Found at i:22897932 original size:20 final size:20
Alignment explanation
Indices: 22897907--22897953 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
22897897 CAAAAAAAAA
*
22897907 TCAAAATAATTT-TCAAAATT
1 TCAAAAT-ATTTATAAAAATT
*
22897927 TTAAAATATTTATAAAAATT
1 TCAAAATATTTATAAAAATT
22897947 TCAAAAT
1 TCAAAAT
22897954 TTATATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
TCAAAATATTTATAAAAATT
Found at i:22897994 original size:35 final size:35
Alignment explanation
Indices: 22897925--22897994 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
22897915 ATTTTCAAAA
* **
22897925 TTTTAAAATATTTATAAAAATTTCAAAATTTATAT
1 TTTTAAAATAATTATAAAAATTTCAAAAAATATAT
22897960 TTTTAAAA-AATTAT-AAAATATTCAAAAAAATATAT
1 TTTTAAAATAATTATAAAAAT-TTC-AAAAAATATAT
22897995 AAAGAAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
33 5 0.17
34 8 0.27
35 17 0.57
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (35 bp):
TTTTAAAATAATTATAAAAATTTCAAAAAATATAT
Found at i:22901995 original size:2 final size:2
Alignment explanation
Indices: 22901984--22902031 Score: 64
Period size: 2 Copynumber: 24.5 Consensus size: 2
22901974 TTTTCAAGTT
*
22901984 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TC TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22902024 TA TGA TA T
1 TA T-A TA T
22902032 GAAAAGAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.90
3 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:22903962 original size:2 final size:2
Alignment explanation
Indices: 22903951--22903998 Score: 64
Period size: 2 Copynumber: 24.5 Consensus size: 2
22903941 TTTTCAAGTT
*
22903951 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TC TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22903991 TA TGA TA T
1 TA T-A TA T
22903999 GAAAAGAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.90
3 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:22905379 original size:21 final size:21
Alignment explanation
Indices: 22905337--22905379 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
22905327 TTTAAAAAAA
* * * *
22905337 TAAATTTTATTTTATGACTTT
1 TAAATATTATTTGATAAATTT
22905358 TAAATATTATTTGATAAATTT
1 TAAATATTATTTGATAAATTT
22905379 T
1 T
22905380 TAATGTCCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (21 bp):
TAAATATTATTTGATAAATTT
Found at i:22907673 original size:19 final size:19
Alignment explanation
Indices: 22907649--22907687 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22907639 TCTGCATTGT
*
22907649 TGAATA-ATAAGTTTTTAAA
1 TGAATAGATAA-TTTATAAA
22907668 TGAATAGATAATTTATAAA
1 TGAATAGATAATTTATAAA
22907687 T
1 T
22907688 CAACCGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (19 bp):
TGAATAGATAATTTATAAA
Found at i:22910482 original size:4 final size:4
Alignment explanation
Indices: 22910473--22910508 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
22910463 TAGAGAATTT
22910473 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
22910509 TATATATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:22912417 original size:2 final size:2
Alignment explanation
Indices: 22912410--22912436 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22912400 ACTCCACTGG
22912410 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22912437 GCCAAATCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22915970 original size:3 final size:3
Alignment explanation
Indices: 22915964--22915988 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
22915954 GGAAAAAAAT
22915964 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
22915989 CGGAGGTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:22927528 original size:88 final size:88
Alignment explanation
Indices: 22927375--22927541 Score: 217
Period size: 88 Copynumber: 1.9 Consensus size: 88
22927365 CACAGAAGGG
* ** * * * * *
22927375 GGACCGCATGCTTTGCAGGTAACCCAGAGTGAAATATGTGTCTAGTAGGCTTAAAGCCCGTACGG
1 GGACCGCATGCTCTGCAGACAACCCAGAGTGAAACACGTGTCTAGCAGGCCTAAAGCCCGCACGG
22927440 AATGTCAATACTAGGAATAGAAA
66 AATGTCAATACTAGGAATAGAAA
* * * *
22927463 GGACCGCGTGCTCTGCAGACAACCCAGAGTGAAACACGTGTCTAGCATGCCTGAAGTCCGCACGG
1 GGACCGCATGCTCTGCAGACAACCCAGAGTGAAACACGTGTCTAGCAGGCCTAAAGCCCGCACGG
*
22927528 AATGTCAATGCTAG
66 AATGTCAATACTAG
22927542 AAACGGCGGA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
88 66 1.00
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (88 bp):
GGACCGCATGCTCTGCAGACAACCCAGAGTGAAACACGTGTCTAGCAGGCCTAAAGCCCGCACGG
AATGTCAATACTAGGAATAGAAA
Found at i:22928158 original size:8 final size:8
Alignment explanation
Indices: 22928145--22928176 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
22928135 TAAAATTTAA
22928145 AATTTATT
1 AATTTATT
22928153 AATTTATT
1 AATTTATT
22928161 AATTTATT
1 AATTTATT
22928169 AATTTATT
1 AATTTATT
22928177 TTTTTTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
AATTTATT
Found at i:22928875 original size:15 final size:15
Alignment explanation
Indices: 22928847--22928888 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
22928837 TTGAAAATTC
*
22928847 AATATACAAATTTTG
1 AATATACAATTTTTG
*
22928862 AATATTCAATTTTTG
1 AATATACAATTTTTG
22928877 AA-ATACAATTTT
1 AATATACAATTTT
22928889 ACAATAGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (15 bp):
AATATACAATTTTTG
Found at i:22933765 original size:24 final size:24
Alignment explanation
Indices: 22933738--22933783 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
22933728 GCAGTAAACA
*
22933738 AAAATCAAAG-AAGAAGGAAAAAAG
1 AAAATAAAAGAAAGAA-GAAAAAAG
22933762 AAAATAAAAGAAAGAAGAAAAA
1 AAAATAAAAGAAAGAAGAAAAA
22933784 TGGAGAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (24 bp):
AAAATAAAAGAAAGAAGAAAAAAG
Found at i:22937256 original size:9 final size:9
Alignment explanation
Indices: 22937242--22937272 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22937232 GTTAAACGAA
22937242 TCGAGTTAT
1 TCGAGTTAT
*
22937251 TCGAGTTAA
1 TCGAGTTAT
22937260 TCGAGTTAT
1 TCGAGTTAT
22937269 TCGA
1 TCGA
22937273 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:22937343 original size:9 final size:9
Alignment explanation
Indices: 22937326--22937362 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
22937316 TGAATTTTCA
22937326 AATTCGAAT
1 AATTCGAAT
*
22937335 AACTCGAAT
1 AATTCGAAT
22937344 AATTCGAAT
1 AATTCGAAT
22937353 AATTCGAAT
1 AATTCGAAT
22937362 A
1 A
22937363 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:22951084 original size:19 final size:21
Alignment explanation
Indices: 22951062--22951106 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
22951052 AGAAGAGAAT
22951062 GAAAATT-AAAGAA-AAAAAA
1 GAAAATTAAAAGAACAAAAAA
*
22951081 GAAAATTAAAAGAACATAAAA
1 GAAAATTAAAAGAACAAAAAA
22951102 GAAAA
1 GAAAA
22951107 AAATGCTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.30
20 6 0.26
21 10 0.43
ACGTcount: A:0.76, C:0.02, G:0.11, T:0.11
Consensus pattern (21 bp):
GAAAATTAAAAGAACAAAAAA
Found at i:22951102 original size:10 final size:11
Alignment explanation
Indices: 22951062--22951106 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 11
22951052 AGAAGAGAAT
22951062 GAAAATT-AAA
1 GAAAATTAAAA
22951072 GAAAA--AAAA
1 GAAAATTAAAA
22951081 GAAAATTAAAA
1 GAAAATTAAAA
*
22951092 GAACA-TAAAA
1 GAAAATTAAAA
22951102 GAAAA
1 GAAAA
22951107 AAATGCTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 8 0.27
10 14 0.47
11 8 0.27
ACGTcount: A:0.76, C:0.02, G:0.11, T:0.11
Consensus pattern (11 bp):
GAAAATTAAAA
Found at i:22952118 original size:14 final size:14
Alignment explanation
Indices: 22952099--22952138 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
22952089 TTGATTGCCA
22952099 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
22952113 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
22952127 GGAAAATGTTTT
1 GTAAAATGTTTT
22952139 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:22952147 original size:20 final size:20
Alignment explanation
Indices: 22952122--22952161 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22952112 CGTAAAATGA
*
22952122 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
22952142 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
22952162 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:22952151 original size:34 final size:35
Alignment explanation
Indices: 22952107--22952173 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
22952097 CAGTAAAATG
*
22952107 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
22952141 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
22952174 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:22952177 original size:14 final size:15
Alignment explanation
Indices: 22952101--22952177 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
22952091 GATTGCCAGT
* *
22952101 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
22952115 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
22952129 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
22952149 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
22952164 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
22952178 TGTTTGATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:22952212 original size:22 final size:24
Alignment explanation
Indices: 22952186--22952237 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
22952176 GGTGTTTGAT
22952186 TATAAATAA-A-TCAA-ATT-AAA
1 TATAAATAATACTCAATATTAAAA
22952206 TATATAATAATACTCAATTATTAAAA
1 TATA-AATAATACTCAA-TATTAAAA
22952232 TATAAA
1 TATAAA
22952238 AGCATTGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 4 0.15
21 5 0.19
22 1 0.04
23 4 0.15
25 5 0.19
26 7 0.27
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (24 bp):
TATAAATAATACTCAATATTAAAA
Found at i:22956507 original size:17 final size:18
Alignment explanation
Indices: 22956487--22956523 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
22956477 TGTAAGTGTG
22956487 AAGTATATATATC-ATAT
1 AAGTATATATATCTATAT
*
22956504 AAGTATTTATATCTATAT
1 AAGTATATATATCTATAT
22956522 AA
1 AA
22956524 ATTAAAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (18 bp):
AAGTATATATATCTATAT
Found at i:22975513 original size:29 final size:28
Alignment explanation
Indices: 22975468--22975522 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
22975458 TATGTATATC
22975468 TATATAAATTAAGAAAAAGGTTATGTACG
1 TATATAAATTAAGAAAAAGG-TATGTACG
* *
22975497 TATATATATTATA-AAAAATGTATGTA
1 TATATAAATTA-AGAAAAAGGTATGTA
22975523 TGCATGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 6 0.26
29 16 0.70
30 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (28 bp):
TATATAAATTAAGAAAAAGGTATGTACG
Found at i:22975590 original size:3 final size:3
Alignment explanation
Indices: 22975575--22975627 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
22975565 TAAATGAGTA
*
22975575 AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22975622 AAT AAT
1 AAT AAT
22975628 GATAGTTGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:22992996 original size:47 final size:49
Alignment explanation
Indices: 22992877--22992999 Score: 128
Period size: 47 Copynumber: 2.6 Consensus size: 49
22992867 TTCATCTTGT
* * *
22992877 ACATTGAACCTACCCTTATCCAATT-CTTATCTTAAAGGCCTAATGTAA
1 ACATTAAACCTACCCTTATCCAATTCCTCATCTTAAAGGCCTAAAGTAA
** * *
22992925 ACATTAAACCTACTTTTA-CGCAATTCCTCCT-TTGAAGG-CTAAAGTAA
1 ACATTAAACCTACCCTTATC-CAATTCCTCATCTTAAAGGCCTAAAGTAA
* *
22992972 ATATTAAACCTACCGTTATCCAATTCCT
1 ACATTAAACCTACCCTTATCCAATTCCT
22993000 TTGTTCCCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
47 32 0.52
48 27 0.44
49 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (49 bp):
ACATTAAACCTACCCTTATCCAATTCCTCATCTTAAAGGCCTAAAGTAA
Found at i:22994877 original size:3 final size:3
Alignment explanation
Indices: 22994869--22994905 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
22994859 ATTATTTAGT
*
22994869 TTA TTA TTA TTA TTA TTA TTA TTA TTAA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
22994906 GTTTTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.94
4 2 0.06
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:22995485 original size:108 final size:108
Alignment explanation
Indices: 22995293--22995499 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 108
22995283 AAATTTTTCT
* * * *
22995293 AAATAAGGCAATATTTTGCATTTGGAAGTTCGAGAAAGCGTGTCCTAATGTGCTGGGTTTCGATT
1 AAATAAGACAATATTTTGCACTTGGAAATTCGAGAAAGCGTGCCCTAATGTGCTGGGTTTCGATT
* * * *
22995358 TTCTCGTTCGACCAGATAGCCGAATATCCTTTTAAAAATTCCA
66 TTCTCGTTAGAACAAATAGCCAAATATCCTTTTAAAAATTCCA
* *
22995401 AAATAAGACAATGTTTTGCGCTTGGAAATTCGAGGAAA-CGTGCCCTAATGTGCTGGGTTTCGAT
1 AAATAAGACAATATTTTGCACTTGGAAATTCGA-GAAAGCGTGCCCTAATGTGCTGGGTTTCGAT
* *
22995465 TTTTTTGTTAGAACAAATAGCCAAATATCCTTTTA
65 TTTCTCGTTAGAACAAATAGCCAAATATCCTTTTA
22995500 TATCTTAATC
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 82 0.95
109 4 0.05
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (108 bp):
AAATAAGACAATATTTTGCACTTGGAAATTCGAGAAAGCGTGCCCTAATGTGCTGGGTTTCGATT
TTCTCGTTAGAACAAATAGCCAAATATCCTTTTAAAAATTCCA
Found at i:22999241 original size:8 final size:8
Alignment explanation
Indices: 22999228--22999284 Score: 80
Period size: 8 Copynumber: 6.9 Consensus size: 8
22999218 AAAATTGTTA
22999228 AAAAAAAG
1 AAAAAAAG
22999236 AAAAAAAG
1 AAAAAAAG
22999244 -AAAAAAG
1 AAAAAAAG
22999251 AAGGAAAAAG
1 AA--AAAAAG
22999261 AAAAAAAG
1 AAAAAAAG
22999269 AAGAAAAAG
1 AA-AAAAAG
22999278 AAAAAAA
1 AAAAAAA
22999285 ATGAGAGGCC
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.16
8 22 0.49
9 8 0.18
10 8 0.18
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:22999249 original size:17 final size:17
Alignment explanation
Indices: 22999227--22999285 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
22999217 AAAAATTGTT
22999227 AAAAAAAAGAAAAAAAG
1 AAAAAAAAGAAAAAAAG
*
22999244 AAAAAAGAAG-GAAAAAG
1 AAAAAA-AAGAAAAAAAG
22999261 -AAAAAAAGAAGAAAAAG
1 AAAAAAAAGAA-AAAAAG
22999278 AAAAAAAA
1 AAAAAAAA
22999286 TGAGAGGCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
15 3 0.08
16 5 0.14
17 18 0.50
18 10 0.28
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAAAG
Found at i:22999264 original size:25 final size:24
Alignment explanation
Indices: 22999229--22999283 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 24
22999219 AAATTGTTAA
22999229 AAAAAAGAAAAAAAGAAAAAAGAAG
1 AAAAAAGAAAAAAAGAAAAAA-AAG
* *
22999254 GAAAAAGAAAAAAAGAAGAAAAAG
1 AAAAAAGAAAAAAAGAAAAAAAAG
22999278 AAAAAA
1 AAAAAA
22999284 AATGAGAGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (24 bp):
AAAAAAGAAAAAAAGAAAAAAAAG
Found at i:22999284 original size:25 final size:26
Alignment explanation
Indices: 22999227--22999284 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
22999217 AAAAATTGTT
22999227 AAAAAAA-AGAAAAA-AAGAAAAAAG
1 AAAAAAAGAGAAAAAGAAGAAAAAAG
*
22999251 AAGGAAAAAGAAAAAAAGAAG-AAAAAG
1 AA--AAAAAGAGAAAAAGAAGAAAAAAG
22999278 AAAAAAA
1 AAAAAAA
22999285 ATGAGAGGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 2 0.07
25 5 0.17
26 5 0.17
27 14 0.48
28 3 0.10
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (26 bp):
AAAAAAAGAGAAAAAGAAGAAAAAAG
Found at i:23000694 original size:89 final size:89
Alignment explanation
Indices: 23000530--23001683 Score: 1522
Period size: 89 Copynumber: 13.0 Consensus size: 89
23000520 GATAACAGAT
* *
23000530 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTTCTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
*
23000595 GGGAAGCAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * *
23000619 CTTCCCTTCCTGTACTGACAGCGGAGCAGACTGAAAATAGTAGATCTTGCATTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* *
23000684 GTGAAACAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
** * * * *
23000708 CTTGCCTTCCTGTACTGACAGTAGAGTAGACTGAAAATAACAGATCTTGCATTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* * *
23000773 GTGAAGCCA-ATCGAAGACACTAGT
66 GCGAAG-CAGATCGAAGACACCAGC
* *
23000797 CTTACCTTCCTGTACTGACAACGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
*
23000862 GCGAAGTAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * *
23000886 CTTACCTTCCTGTACTGATAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTATATTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
23000951 GCGAAGCCA-ATCGAAGACACCAGC
66 GCGAAG-CAGATCGAAGACACCAGC
* * * * *
23000975 CTTACCTTCCTGTACTGACAGCGAAGTAGACTAAAGATAGCAGATCTTACCTTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
*
23001040 GCGAAGTAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * *
23001064 ATTGCCTTCCTATACTGACAGCGGAGCAGACTGAAGATAACAAATCTTACCTTCCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* * *
23001129 GCGAAGCAGCTCAAAGGCACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * **
23001153 CTTGCCTTCCTGTACTGACAGCGAAGCAGACTAAAGATAACAGATCTTGCCTTCCTAAACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
** * *
23001218 GTAAAGCAGATTGAAAACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * *
23001242 CTTGCCTTCCTGTACTGACAGCGGAACAGACTGAAGATAACAGATCTTGCCTTCCTGTACTGACA
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
** * *
23001307 ATGAAGCAGATCGAATACACCAAC
66 GCGAAGCAGATCGAAGACACCAGC
* * * *
23001331 CTTGCCTTCTTGTACTGACAGTGGAGCAGACTGAAGATAGCAGATATTGCCTTCCTATACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* * *
23001396 GCGAAGCAGATTGAGGACATCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * *
23001420 CTTGCCTTCCTGTACTGATAGTGGAGCAGACTGAAGATAGCAGATCTTGCCTTTCTGTACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
* *
23001485 GCGAAACAGATCGAAGACACTAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * * ** *
23001509 CTTGCCTTCCTGTACTGATAGTGGAGCAGACTAAATATAGCAGATATT-TTTTCCTATACTGACG
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
*
23001573 GCGAAGCAGATCAAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * * *
23001597 CTTGCCTTCCTGTACTGACAGCGGAGTAGACTAAATATAGCAGATCTTACCATCCTGTACTGACA
1 CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
23001662 GCGAAGCAGATCGAAGACACCA
66 GCGAAGCAGATCGAAGACACCA
23001684 TAGTTTACAG
Statistics
Matches: 934, Mismatches: 126, Indels: 10
0.87 0.12 0.01
Matches are distributed among these distances:
88 79 0.08
89 852 0.91
90 3 0.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (89 bp):
CTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACG
GCGAAGCAGATCGAAGACACCAGC
Found at i:23001943 original size:132 final size:132
Alignment explanation
Indices: 23001722--23002456 Score: 1069
Period size: 132 Copynumber: 5.6 Consensus size: 132
23001712 GCAAATCTTA
* * *
23001722 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAAGATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
* * *
23001787 GTAGATTTAAGTCATTTGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGGTTC
66 GTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
23001852 TG
131 TG
* * *
23001854 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCTTCCCAAGATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
* * ** *
23001919 GTAGATTTAAGTCATTTGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTATAGATTT
66 GTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
23001984 TG
131 TG
* * *
23001986 TCCCCCTAAGCAGTAGTGGAGCAGATCAAAAACGGTGAATCTTATCTTCCCAAAATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
* ** * * *
23002051 GCAGATTTAAGCCACCAGTTCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATTC
66 GTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
23002116 TG
131 TG
*
23002118 TCCCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
* *
23002183 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTC
66 GTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
23002248 TG
131 TG
* ** * * * *
23002250 TCACCCTAAGCAGTAGTGGAGCAGATTGAAAATAGTGAATCTTATCTTCTCGAGATAGTAGAGAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
* *
23002315 -TCAGATTTAAGCCATTAGTGCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGACTGCAGATT
66 GT-AGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
23002379 CTG
130 CTG
* * * * *
23002382 TCTCCCTAAGCAGTAGTGGAACGGATCAAATATGGTGAATCTTATCTTCTCAAGGTAGTAGG-GA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGT-GGAGA
*
23002446 AGTAAATTTAA
65 AGTAGATTTAA
23002457 ACCACAAACC
Statistics
Matches: 549, Mismatches: 51, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
132 547 1.00
133 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
GTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TG
Found at i:23002748 original size:14 final size:15
Alignment explanation
Indices: 23002721--23002754 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
23002711 CCCAACTAGC
23002721 CCAAATACAACCAAA
1 CCAAATACAACCAAA
23002736 CCAAATA-AACCAAA
1 CCAAATACAACCAAA
23002750 CCAAA
1 CCAAA
23002755 ATTAATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.62, C:0.32, G:0.00, T:0.06
Consensus pattern (15 bp):
CCAAATACAACCAAA
Found at i:23003954 original size:3 final size:3
Alignment explanation
Indices: 23003928--23003981 Score: 56
Period size: 3 Copynumber: 17.0 Consensus size: 3
23003918 TTTGGCAATT
*
23003928 TTA TTA TTTA GTTAA TTA TT- TTA TTA TTA TTA CTA TTA TTA TTAA TTA
1 TTA TTA -TTA -TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
23003976 TTA TTA
1 TTA TTA
23003982 GTTTTATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
2 2 0.05
3 31 0.70
4 10 0.23
5 1 0.02
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:23003978 original size:22 final size:20
Alignment explanation
Indices: 23003925--23003991 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 20
23003915 GTTTTTGGCA
23003925 ATTTTATTATTTAGTTA--ATT
1 ATTTTATTA-TTA-TTACTATT
23003945 ATTTTATTATTATTACTATT
1 ATTTTATTATTATTACTATT
* *
23003965 ATTATTAATTATTATTAGTTTT
1 ATT-TT-ATTATTATTACTATT
23003987 ATTTT
1 ATTTT
23003992 TCTTATCTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
18 3 0.07
19 3 0.07
20 15 0.37
21 4 0.10
22 16 0.39
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (20 bp):
ATTTTATTATTATTACTATT
Found at i:23003988 original size:12 final size:11
Alignment explanation
Indices: 23003928--23003989 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 11
23003918 TTTGGCAATT
23003928 TTATTA-TTTA
1 TTATTATTTTA
23003938 GTTAATTATTTTA
1 -TT-ATTATTTTA
*
23003951 TTATTATTACTA
1 TTATTATT-TTA
23003963 TTATTATTAATTA
1 TTATTATT--TTA
23003976 TTATTAGTTTTA
1 TTATTA-TTTTA
23003988 TT
1 TT
23003990 TTTCTTATCT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
11 8 0.18
12 21 0.48
13 13 0.30
14 2 0.05
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.65
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:23004644 original size:108 final size:108
Alignment explanation
Indices: 23004447--23004658 Score: 322
Period size: 108 Copynumber: 2.0 Consensus size: 108
23004437 AAAGAAAATT
* *
23004447 TTTCTAAATAAGGTAATATTTTGCATTTGAAAGTTCGAGAAAGCGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGTAATATTTTGCATTGGAAAGTTCGAGAAAGCGTGCCCTAATGTGCTGGGTTT
* * *
23004512 CGATTTTCTCGTTCGACCAGATAGCCGAATATCCTTTTAAAAA
66 CGATTTTCTCGTTAGACCAAATAGCCAAATATCCTTTTAAAAA
*
23004555 TTTCAAAATAAGGTAATGTTTTTCGC-TTGGAAA-TTCGAGGAAA-CGTGCCCTAATGTGCTGGG
1 TTTCAAAATAAGGTAAT-ATTTT-GCATTGGAAAGTTCGA-GAAAGCGTGCCCTAATGTGCTGGG
23004617 TTTCGATTTTCTCGTTAGACCAAATAGCCAAATATCCTTTTA
63 TTTCGATTTTCTCGTTAGACCAAATAGCCAAATATCCTTTTA
23004659 TATCTTAACC
Statistics
Matches: 95, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
108 79 0.83
109 14 0.15
110 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (108 bp):
TTTCAAAATAAGGTAATATTTTGCATTGGAAAGTTCGAGAAAGCGTGCCCTAATGTGCTGGGTTT
CGATTTTCTCGTTAGACCAAATAGCCAAATATCCTTTTAAAAA
Found at i:23006412 original size:31 final size:30
Alignment explanation
Indices: 23006356--23006431 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 30
23006346 ATTAGGGATC
* *
23006356 TAGTCCTTATAC-TTTAATTTGATCAATTT
1 TAGTCTTTATACTTTTAAATTGATCAATTT
*
23006385 TAGTTTTTATACTTTTCAAATTGATCAATTT
1 TAGTCTTTATACTTTT-AAATTGATCAATTT
*
23006416 TAGTCTTTGTACTTTT
1 TAGTCTTTATACTTTT
23006432 TGAATTTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 10 0.25
30 3 0.08
31 27 0.68
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55
Consensus pattern (30 bp):
TAGTCTTTATACTTTTAAATTGATCAATTT
Found at i:23010362 original size:28 final size:29
Alignment explanation
Indices: 23010313--23010372 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
23010303 ACCACGCATT
*
23010313 TTTCCAATAAATTTTTAATTTT-ATTGAAA
1 TTTCCAATAAATTTCTAATTTTAATT-AAA
* *
23010342 TTTCCACT-AATTTCTATTTTTAATTAAA
1 TTTCCAATAAATTTCTAATTTTAATTAAA
23010370 TTT
1 TTT
23010373 AACTATGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (29 bp):
TTTCCAATAAATTTCTAATTTTAATTAAA
Found at i:23013765 original size:24 final size:25
Alignment explanation
Indices: 23013733--23013781 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
23013723 TGTATAATTT
23013733 ATTTAATTTAAT-TATCATAT-TATA
1 ATTTAATTTAATATAT-ATATATATA
*
23013757 ATTTGATTTAATATATATATATATA
1 ATTTAATTTAATATATATATATATA
23013782 TATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (25 bp):
ATTTAATTTAATATATATATATATA
Found at i:23013774 original size:2 final size:2
Alignment explanation
Indices: 23013767--23013794 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23013757 ATTTGATTTA
23013767 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23013795 GTAATTGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23017640 original size:16 final size:18
Alignment explanation
Indices: 23017601--23017634 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23017591 TAAGTTTATA
23017601 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
23017618 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
23017635 AATTTAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:23018609 original size:17 final size:18
Alignment explanation
Indices: 23018576--23018611 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23018566 TTTCATCTAC
*
23018576 TTTTAAAAATATTTTTAT
1 TTTTAAAAATATATTTAT
23018594 TTTTAAAAATA-ATTTAT
1 TTTTAAAAATATATTTAT
23018611 T
1 T
23018612 CAATTGAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTAAAAATATATTTAT
Found at i:23018752 original size:28 final size:28
Alignment explanation
Indices: 23018712--23018770 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
23018702 TATAAAAAAC
*
23018712 TTTATCTATTTTTGAAAATTTTATCTAT
1 TTTATCTAATTTTGAAAATTTTATCTAT
* * * * *
23018740 TTTATTTAATTTTTAGATTTTTATGTAT
1 TTTATCTAATTTTGAAAATTTTATCTAT
23018768 TTT
1 TTT
23018771 TAAAAAGAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.66
Consensus pattern (28 bp):
TTTATCTAATTTTGAAAATTTTATCTAT
Found at i:23020917 original size:18 final size:18
Alignment explanation
Indices: 23020882--23020936 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
23020872 CCTTGCTCTT
*
23020882 ATTAA-AAATTATAAAAA
1 ATTAATAAATTTTAAAAA
23020899 ATTAATAAATTTTAGAAAA
1 ATTAATAAATTTTA-AAAA
*
23020918 A-TATTAAATTTTAATAAA
1 ATTAATAAATTTTAA-AAA
23020936 A
1 A
23020937 ATATTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 6 0.18
18 22 0.67
19 5 0.15
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
ATTAATAAATTTTAAAAA
Found at i:23020936 original size:19 final size:18
Alignment explanation
Indices: 23020904--23020944 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
23020894 AAAAAATTAA
23020904 TAAATTTTAGAAAAATAT
1 TAAATTTTAGAAAAATAT
*
23020922 TAAATTTTAATAAAAATAT
1 TAAATTTT-AGAAAAATAT
23020941 TAAA
1 TAAA
23020945 AAATATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
TAAATTTTAGAAAAATAT
Found at i:23020985 original size:35 final size:36
Alignment explanation
Indices: 23020931--23021009 Score: 106
Period size: 35 Copynumber: 2.2 Consensus size: 36
23020921 TTAAATTTTA
*** *
23020931 ATAAAAATATTAAAAAATATATTTTTTTATAAATATC
1 ATAAAAATA-TAAAAAATATAAAATTTTATAAAAATC
23020968 ATAAAAATA-AAAAAATATAAAATTTTATAAAAATC
1 ATAAAAATATAAAAAATATAAAATTTTATAAAAATC
23021003 ATAAAAA
1 ATAAAAA
23021010 ATTGATGACC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
35 29 0.76
37 9 0.24
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (36 bp):
ATAAAAATATAAAAAATATAAAATTTTATAAAAATC
Found at i:23021333 original size:89 final size:89
Alignment explanation
Indices: 23021163--23021334 Score: 265
Period size: 90 Copynumber: 1.9 Consensus size: 89
23021153 TAAAAGCAGA
* *
23021163 GGCTTAATTGCTTTTCTTGAAAAAGTTTTAGGGTATTTTTGATGCATTTTGAAAGTTCAAGTACC
1 GGCTTAATTGCTTTTCTTGAAAAAGTTTGAGGCTATTTTTGATGCATTTTGAAAGTTCAAGTACC
*
23021228 CAATTGAGTGCAAAAAAGGGTAGG
66 CAAATGAGTGCAAAAAAGGGTAGG
*
23021252 GGCTTAATTGCTTTTTTTGAAAAAGGTTTGAGGACT-TTTTTGATGCATTTTGAAAGTTCAAGTA
1 GGCTTAATTGCTTTTCTTGAAAAA-GTTTGAGG-CTATTTTTGATGCATTTTGAAAGTTCAAGTA
* *
23021316 CCTAAATGAGTGGAAAAAA
64 CCCAAATGAGTGCAAAAAA
23021335 AAAGACTTAA
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
89 23 0.31
90 51 0.68
91 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (89 bp):
GGCTTAATTGCTTTTCTTGAAAAAGTTTGAGGCTATTTTTGATGCATTTTGAAAGTTCAAGTACC
CAAATGAGTGCAAAAAAGGGTAGG
Found at i:23022002 original size:14 final size:15
Alignment explanation
Indices: 23021983--23022014 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
23021973 GGGATATATA
23021983 AAATAT-TAAAAAAT
1 AAATATATAAAAAAT
23021997 AAATATATAAAAAAT
1 AAATATATAAAAAAT
23022012 AAA
1 AAA
23022015 GACACGTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATATATAAAAAAT
Found at i:23023813 original size:16 final size:15
Alignment explanation
Indices: 23023789--23023822 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
23023779 CATGTAAATA
*
23023789 CTTATATTTTTATAT
1 CTTATATTTATATAT
23023804 CTTATAATTTATATAT
1 CTTAT-ATTTATATAT
23023820 CTT
1 CTT
23023823 TTTTTCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (15 bp):
CTTATATTTATATAT
Found at i:23024510 original size:110 final size:109
Alignment explanation
Indices: 23024102--23024531 Score: 604
Period size: 108 Copynumber: 3.9 Consensus size: 109
23024092 AAAAAAAAGG
* * *
23024102 AAAATATTTCAAAATAAGACAATATTTTGCATTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
1 AAAAT-TTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
*
23024167 GG-TTCAGATTTCTCGTTTGACCAAATGACTTAATATCCTTTTC-A
65 GGTTTC-GATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCAA
* * *
23024211 AAAATTTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTAG
1 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
* *
23024276 GTTTTGATTTCTCGTTCCACCAAATGACTTAATATCCTTTT-AA
66 GTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCAA
23024319 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
1 AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
*
23024384 GTTTCGATTTCTCGTTCGACCAAAT-AGCTAAATATCCTTTTCAA
66 GTTTCGATTTCTCGTTCGACCAAATGA-CTTAATATCCTTTTCAA
* * * *
23024428 AAAACTTTTCAAAAATAAGGCAATGTTTTACGTTTGGAAATTTGAGAAACGTG-CCTAAGGTGCT
1 AAAA-TTTTC-AAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACT
* *
23024492 GGGTTTCGATTTCACGTTC-AGCCAAATTG-CTGAATATCCT
64 GGGTTTCGATTTCTCGTTCGA-CCAAA-TGACTTAATATCCT
23024532 CTTGATTTTT
Statistics
Matches: 293, Mismatches: 19, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
107 1 0.00
108 190 0.65
109 14 0.05
110 48 0.16
111 40 0.14
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (109 bp):
AAAATTTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
GTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCAA
Found at i:23024978 original size:13 final size:13
Alignment explanation
Indices: 23024952--23025005 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
23024942 TGTTATATTT
23024952 ATTTAAAATATGAA
1 ATTTAAAAT-TGAA
23024966 ATTTAAAATTGAA
1 ATTTAAAATTGAA
* *
23024979 ATTTTATATT-AA
1 ATTTAAAATTGAA
*
23024991 TATTTAAATTTGAA
1 -ATTTAAAATTGAA
23025005 A
1 A
23025006 ATAAATATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
12 2 0.06
13 20 0.61
14 11 0.33
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (13 bp):
ATTTAAAATTGAA
Found at i:23029723 original size:7 final size:7
Alignment explanation
Indices: 23029713--23029758 Score: 76
Period size: 7 Copynumber: 6.7 Consensus size: 7
23029703 AAAATTAAAT
23029713 AAATGAA
1 AAATGAA
23029720 AAATGAA
1 AAATGAA
23029727 AAATGAA
1 AAATGAA
23029734 AAATGAA
1 AAATGAA
23029741 AAATG-A
1 AAATGAA
*
23029747 AAGTGAA
1 AAATGAA
23029754 AAATG
1 AAATG
23029759 GAGAGGCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 5 0.14
7 31 0.86
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAATGAA
Found at i:23029737 original size:21 final size:20
Alignment explanation
Indices: 23029713--23029758 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
23029703 AAAATTAAAT
23029713 AAATGAAAAATGAAAAATGAA
1 AAATGAAAAATG-AAAATGAA
*
23029734 AAATGAAAAATGAAAGTGAA
1 AAATGAAAAATGAAAATGAA
23029754 AAATG
1 AAATG
23029759 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (20 bp):
AAATGAAAAATGAAAATGAA
Found at i:23031220 original size:44 final size:44
Alignment explanation
Indices: 23031153--23031598 Score: 212
Period size: 44 Copynumber: 9.9 Consensus size: 44
23031143 GAAGAATTTC
23031153 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG
* * * *
23031197 AGATCTTATTTCCTTGAGGTTACAGCGGAGCAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG
* * * ** *** *
23031241 TA-ATCCTATCTCTCTGA-AGTTACAGTGGAGTGGATT-AAAATAA
1 -AGATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAG
* *
23031284 ATGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATTACATCAGATTGAAGCCAG
1 A-GATCTTATCTCCCTGAGA-TTACAG-CG-G-AG-------CAGATTGAAGCCAG
* * **
23031339 AGATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGATA-
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG
* * * * * *** *
23031382 ATAATCCTATCTCTCTGA-AGTTACAGTGGAGCGGATT-AAAATAA
1 A-GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAG
* * * * * * *
23031426 AGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCA-TCAG
1 A-GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG
* * * ** * *
23031470 -G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATTTC
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCA---G
* * * *
23031514 AGATCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG
*
23031558 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGC
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC
23031599 TAGTAATCCT
Statistics
Matches: 307, Mismatches: 67, Indels: 56
0.71 0.16 0.13
Matches are distributed among these distances:
41 32 0.10
42 2 0.01
43 11 0.04
44 188 0.61
45 4 0.01
46 34 0.11
47 3 0.01
51 2 0.01
52 1 0.00
54 25 0.08
55 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG
Found at i:23031439 original size:142 final size:142
Alignment explanation
Indices: 23031183--23031461 Score: 459
Period size: 142 Copynumber: 2.0 Consensus size: 142
23031173 TACAGCGGAG
* * * * * *
23031183 CAGATTGAAGCCAGAGATCTTATTTCCTTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGATAATAATCCT
* * *
23031248 ATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
23031313 AGTAGATTACAT
131 AGTAGATTACAT
*
23031325 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGATAATAATCCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGATAATAATCCT
*
23031390 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAG
66 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
23031455 AGTAGAT
131 AGTAGAT
23031462 CGCATCAGGT
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 126 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (142 bp):
CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGATAATAATCCT
ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
AGTAGATTACAT
Found at i:23031487 original size:41 final size:41
Alignment explanation
Indices: 23031430--23031592 Score: 146
Period size: 46 Copynumber: 3.8 Consensus size: 41
23031420 AAATAAAGGA
* * *
23031430 TCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCATCAGG
1 TCTTATCTCCCTGAGGTTACAGCGGAGTAGATCGAATCAGG
* * *
23031471 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGCGGAGTAGATC---GAA--TCAGG
* * * * *
23031517 TCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCTAGAG
1 TCTTATCTCCCTGAGGTTACAGCGGAGTAGATCGAATC-AG-G
*
23031560 ATCTTATCTCCCTGAGATTACAGCGGAGTAGAT
1 -TCTTATCTCCCTGAGGTTACAGCGGAGTAGAT
23031593 TGAAGCTAGT
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
41 30 0.31
42 2 0.02
43 3 0.03
44 30 0.31
46 33 0.34
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (41 bp):
TCTTATCTCCCTGAGGTTACAGCGGAGTAGATCGAATCAGG
Found at i:23031599 original size:44 final size:44
Alignment explanation
Indices: 23031326--23031631 Score: 214
Period size: 44 Copynumber: 7.0 Consensus size: 44
23031316 AGATTACATC
* **
23031326 AGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCAGAGT
1 AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
* * * * *
23031370 AGATTGAAGATA-ATAATCCTATCTCTCTGA-AGTTACAGTGGAGC
1 AGATTGAAGCTAGA-GATCTTATCTCCCTGAGA-TTACAGTGGAGT
* ** * * * **
23031414 GGATT-AAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGT
1 AGATTGAAGCTAGA-GATCTTATCTCCCTGAGATTACAGTGGAGT
* * * *
23031458 AGATCGCATC-AG-G-TCTTATCTCCCTGAGGTTACAGTGGAGT
1 AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
** * ** * * *
23031499 AGACCGAAGAATTTCAGATCTTATTTCCCTGAGGTTACAGTGGAGC
1 AGATTGAAG--CTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
*
23031545 AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGCGGAGT
1 AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
* *
23031589 AGATTGAAGCTAGTA-ATCCTATCTCTCTGA-AGTTACAGTGGAG
1 AGATTGAAGCTAG-AGATCTTATCTCCCTGAGA-TTACAGTGGAG
23031632 NNNNNNNNNN
Statistics
Matches: 204, Mismatches: 46, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
41 31 0.15
42 1 0.00
43 8 0.04
44 128 0.63
45 3 0.01
46 33 0.16
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATTGAAGCTAGAGATCTTATCTCCCTGAGATTACAGTGGAGT
Found at i:23032931 original size:3 final size:3
Alignment explanation
Indices: 23032923--23032963 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
23032913 TATTTTAGTG
* *
23032923 TTA TTA TTA TTA TTA TTA TTA TTA GTA TTA GTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23032964 GCTTTTATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:23033223 original size:30 final size:31
Alignment explanation
Indices: 23033189--23033254 Score: 75
Period size: 32 Copynumber: 2.1 Consensus size: 31
23033179 TGTAAATACT
23033189 TATATT-TTT-ATATCTT-ATAATTTATATATA
1 TATATTCTTTCATAT-TTAATAATTT-TATATA
*
23033219 TATATTCTTTCATATTTACATAATTTTATGTA
1 TATATTCTTTCATATTTA-ATAATTTTATATA
23033251 TATA
1 TATA
23033255 CATACATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
30 6 0.19
31 5 0.16
32 13 0.42
33 7 0.23
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (31 bp):
TATATTCTTTCATATTTAATAATTTTATATA
Found at i:23044080 original size:245 final size:238
Alignment explanation
Indices: 23043375--23044090 Score: 869
Period size: 232 Copynumber: 3.0 Consensus size: 238
23043365 ATTTGGAAGG
* *
23043375 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGTATAAGGGTACTTAAAAAGAAAAAAAAAT
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGAT-AGGGTACTTAAAAAG----AAAAAC
* *
23043440 GAATAGTCGGAACAACATAGGAAAAATATTTACATCTTCTCATTTATTTGATTGTGAAAGT-TAA
61 GAATAGTCAGAACAACATAGGAAAAATATTTACATCTTCCCATTTATTTGATTGTGAAAGTATAA
* * * *
23043504 -TGAACAATGGGATATGA-TCTATGAAGGTGTTGAAGTTACTGAATGTCTTTCTGGATATTTGAT
126 GTGAACAATGGAATATGATTTTTTG-AGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTTGAT
* * * ** *
23043567 GTTTGGTAATAAGTTTTTTATTTATTTATGATCTACCGATAGGTGCCCT
190 GTCTGGTAATAAGCTATTCGTTTATTTATGATCTACCGGTAGGTGCCCT
*
23043616 TTGTTAGAGGATCATATCTCCTTTGGAAATGTGTTGGATAGGG---TTAAAAAGAAAAACGAATA
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTACTTAAAAAGAAAAACGAATA
* * * *
23043678 GTCAAAACAACACAGG-AAAATAGTTACATCTTCCCATTTATTTGGTTGTGAAAGTA-AAG-GAA
66 GTCAGAACAACATAGGAAAAATATTTACATCTTCCCATTTATTTGATTGTGAAAGTATAAGTGAA
* * * * * *
23043740 CAATGGGAA-ATGATCTATTAAGGTGTTGAAGTTATTGAATGAT-TTTCTGAATATTTAATGGCT
131 CAAT-GGAATATGATTTTTTGAGGTGTTGAAGTTACTGAATG-TCTTTCTGAATATTTGATGTCT
* *
23043803 GGTAATAAGCTATTCGTTTATTTATGATCTACCGGTGGGTGCTCT
194 GGTAATAAGCTATTCGTTTATTTATGATCTACCGGTAGGTGCCCT
*
23043848 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTTACTTAAAAAGAAAAACGAGT
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGG-TACTTAAAAAGAAAAACGAAT
* *
23043913 AGTCAGAACAACATAGGAAAAAAAATTTACATCTTTCCCATTTGTTTGATTGTGAAAGTGAATGA
65 AGTCAGAACAACATAGG-AAAAATATTTACATC-TTCCCATTTATTTGATTGTGAAAGT--AT-A
* * * *
23043978 AGTTGAACAATGAAATATAATTTTTTGAGGTGTTGAAGTTACTGAACGTCTTTCTGCATATTTGA
125 AG-TGAACAATGGAATATGATTTTTTGAGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTTGA
* * * * *
23044043 TGTCAGGTAATAAGCTATTGGTTTATTTCTGATCTACCAGTTGGTGCC
189 TGTCTGGTAATAAGCTATTCGTTTATTTATGATCTACCGGTAGGTGCC
23044091 ATTGTATAAG
Statistics
Matches: 404, Mismatches: 51, Indels: 36
0.82 0.10 0.07
Matches are distributed among these distances:
232 165 0.41
233 28 0.07
236 32 0.08
237 8 0.02
238 12 0.03
239 23 0.06
240 4 0.01
241 38 0.09
243 3 0.01
244 4 0.01
245 87 0.22
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (238 bp):
TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTACTTAAAAAGAAAAACGAATA
GTCAGAACAACATAGGAAAAATATTTACATCTTCCCATTTATTTGATTGTGAAAGTATAAGTGAA
CAATGGAATATGATTTTTTGAGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTTGATGTCTGG
TAATAAGCTATTCGTTTATTTATGATCTACCGGTAGGTGCCCT
Found at i:23045689 original size:96 final size:96
Alignment explanation
Indices: 23045525--23045769 Score: 323
Period size: 96 Copynumber: 2.6 Consensus size: 96
23045515 CAGTAGTTCG
* * * *
23045525 GTGAACAATACCGGGAATCCTCCTGCATCCCTACCAAACAGCCAACTGAACTCCTTTGCCAGTTT
1 GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACTGAACTCCTTTGCCAGTTT
* *** *
23045590 TAACAGCCTGAGTGC-GATCACTTCTAATTCT
66 TAACAGCC-CAACCCAGATCACTACTAATTCT
*
23045621 GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACCGAACTCCTCTT-CCAGTT
1 GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACTGAACTCCT-TTGCCAGTT
* * *
23045685 TTAACAGCCCAACCCAGTTCAGTACTAGTTCT
65 TTAACAGCCCAACCCAGATCACTACTAATTCT
* *
23045717 GTGAACAATTCTGGGAACTCTCCTGCATCCCTACCGAACAACCAACTGAACTC
1 GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACTGAACTC
23045770 TACTGCTTTT
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
95 2 0.02
96 127 0.97
97 2 0.02
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (96 bp):
GTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACTGAACTCCTTTGCCAGTTT
TAACAGCCCAACCCAGATCACTACTAATTCT
Found at i:23048817 original size:31 final size:31
Alignment explanation
Indices: 23048779--23048850 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
23048769 ACATCCAAGG
** * *
23048779 TCACTAAACTATTAGTATGTTTATGTTTTGA
1 TCACTAAACTATTAGTAAATTTACGTTTCGA
*
23048810 TCACTAAATTATTAGTAAATTTACGTTTCGA
1 TCACTAAACTATTAGTAAATTTACGTTTCGA
*
23048841 TCACTCAACT
1 TCACTAAACT
23048851 TCAAAAAGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (31 bp):
TCACTAAACTATTAGTAAATTTACGTTTCGA
Found at i:23052644 original size:29 final size:30
Alignment explanation
Indices: 23052596--23052654 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
23052586 GTATAATGTC
23052596 ATACATAAATTTTAATTTTG-TGTGATTTT
1 ATACATAAATTTTAATTTTGTTGTGATTTT
*
23052625 ATACATGAAATTTTAA-TTTGTTTTGATTTT
1 ATACAT-AAATTTTAATTTTGTTGTGATTTT
23052655 CACAAATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (30 bp):
ATACATAAATTTTAATTTTGTTGTGATTTT
Found at i:23063069 original size:21 final size:19
Alignment explanation
Indices: 23063045--23063096 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
23063035 CACGACCTGG
23063045 CCACACGGCCGTATAACCTTT
1 CCACACGGCCGTATAA-C-TT
*
23063066 CCACACGG-CTTATAACTT
1 CCACACGGCCGTATAACTT
23063084 CTCACACGGCCGT
1 C-CACACGGCCGT
23063097 GTGACCCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 3 0.11
19 8 0.30
20 8 0.30
21 8 0.30
ACGTcount: A:0.23, C:0.38, G:0.15, T:0.23
Consensus pattern (19 bp):
CCACACGGCCGTATAACTT
Found at i:23063401 original size:38 final size:38
Alignment explanation
Indices: 23063339--23063437 Score: 92
Period size: 38 Copynumber: 2.6 Consensus size: 38
23063329 ACTACATTAT
* * **
23063339 CGATTGCATGTTCAGCAT-TACTACTGTTACTATTGAAC
1 CGATTACATGTTAAGCATGT-CTACTACTACTATTGAAC
* * *
23063377 CGATTACATGTTAAGCATGTCTACTACTATTGTTGAAT
1 CGATTACATGTTAAGCATGTCTACTACTACTATTGAAC
* * *
23063415 TGAATACATATTAAGCATGTCTA
1 CGATTACATGTTAAGCATGTCTA
23063438 TTATTTTTAC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 49 0.98
39 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (38 bp):
CGATTACATGTTAAGCATGTCTACTACTACTATTGAAC
Found at i:23066139 original size:10 final size:10
Alignment explanation
Indices: 23066116--23066150 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
23066106 TTAATTAACA
23066116 TATAAATTAG
1 TATAAATTAG
23066126 TATAATATTA-
1 TATAA-ATTAG
23066136 TATAAATTAG
1 TATAAATTAG
23066146 TATAA
1 TATAA
23066151 TAGTATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 4 0.17
10 15 0.65
11 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (10 bp):
TATAAATTAG
Found at i:23066162 original size:20 final size:20
Alignment explanation
Indices: 23066115--23066160 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
23066105 ATTAATTAAC
*
23066115 ATATAAATTAGTATAATATT
1 ATATAAATTAGTATAATAGT
23066135 ATATAAATTAGTATAATAGT
1 ATATAAATTAGTATAATAGT
23066155 AT-TAAA
1 ATATAAA
23066161 ATAAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (20 bp):
ATATAAATTAGTATAATAGT
Found at i:23069543 original size:38 final size:38
Alignment explanation
Indices: 23069448--23069548 Score: 139
Period size: 38 Copynumber: 2.7 Consensus size: 38
23069438 AGTAGCTGAA
* *
23069448 CAATTCAACACTAGCAATACTCATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
* *
23069486 CAATTCAACATTCGCAGTAGTCATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
* * *
23069524 TAATTCAACACTAGTAGTAGACATG
1 CAATTCAACACTAGCAGTAGTCATG
23069549 ATTTATCATG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (38 bp):
CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
Found at i:23070507 original size:8 final size:8
Alignment explanation
Indices: 23070484--23070579 Score: 95
Period size: 8 Copynumber: 11.8 Consensus size: 8
23070474 AATAAATAAG
23070484 TATTATAT
1 TATTATAT
23070492 TAATTATAT
1 T-ATTATAT
*
23070501 TATTATAA
1 TATTATAT
23070509 TATTA-AT
1 TATTATAT
*
23070516 TATAATAT
1 TATTATAT
*
23070524 TATAATAT
1 TATTATAT
**
23070532 TACAATAT
1 TATTATAT
*
23070540 TAATTATAA
1 T-ATTATAT
*
23070549 TATTATAA
1 TATTATAT
23070557 TATTATAT
1 TATTATAT
23070565 TAATTATAT
1 T-ATTATAT
23070574 TATTAT
1 TATTAT
23070580 TTGGGTTTTG
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
7 5 0.07
8 50 0.66
9 21 0.28
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (8 bp):
TATTATAT
Found at i:23070513 original size:20 final size:20
Alignment explanation
Indices: 23070488--23070579 Score: 94
Period size: 20 Copynumber: 5.0 Consensus size: 20
23070478 AATAAGTATT
23070488 ATATTAATTATATTATTATA
1 ATATTAATTATATTATTATA
*
23070508 ATATTAATTATAATATTATA
1 ATATTAATTATATTATTATA
23070528 ATATTACA--ATATTAATTATA
1 ATATTA-ATTATATT-ATTATA
23070548 ATATT-A-TA-A-TA-T-T-
1 ATATTAATTATATTATTATA
23070561 ATATTAATTATATTATTAT
1 ATATTAATTATATTATTAT
23070580 TTGGGTTTTG
Statistics
Matches: 61, Mismatches: 2, Indels: 19
0.74 0.02 0.23
Matches are distributed among these distances:
13 5 0.08
14 2 0.03
15 3 0.05
16 2 0.03
17 3 0.05
18 3 0.05
19 6 0.10
20 36 0.59
21 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (20 bp):
ATATTAATTATATTATTATA
Done.