Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 75 of 136
Found at i:24561094 original size:23 final size:24
Alignment explanation
Indices: 24561041--24561097 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 24
24561031 ATATTGAAGT
* *
24561041 TATAAAATATATAAAAAATGTACA
1 TATAAAATATATAAAAAATGAAAA
*
24561065 TAT-AAATATATAAAATAT-AAAA
1 TATAAAATATATAAAAAATGAAAA
24561087 TATAAAATATA
1 TATAAAATATA
24561098 CGTACATATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.17
23 21 0.72
24 3 0.10
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (24 bp):
TATAAAATATATAAAAAATGAAAA
Found at i:24561238 original size:3 final size:3
Alignment explanation
Indices: 24561218--24561268 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
24561208 AAATGAAAAT
* * * * *
24561218 ATA ATG ATA ATA ACA ATA ATA TTA ATA ATA ATA CTA ATA ATA CTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24561266 ATA
1 ATA
24561269 CATATAATTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:24565333 original size:12 final size:12
Alignment explanation
Indices: 24565316--24565340 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24565306 AACATGGTAG
24565316 ATGAATAAATAA
1 ATGAATAAATAA
24565328 ATGAATAAATAA
1 ATGAATAAATAA
24565340 A
1 A
24565341 ATAAAAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (12 bp):
ATGAATAAATAA
Found at i:24565490 original size:15 final size:15
Alignment explanation
Indices: 24565472--24565512 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
24565462 AATGATAGAA
*
24565472 ATAATAATAAAATGG
1 ATAATAATAAAATGC
24565487 ATAA-AATAAAAATGC
1 ATAATAAT-AAAATGC
24565502 ATAATAATAAA
1 ATAATAATAAA
24565513 GAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 17 0.74
16 3 0.13
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.24
Consensus pattern (15 bp):
ATAATAATAAAATGC
Found at i:24572160 original size:8 final size:8
Alignment explanation
Indices: 24572149--24572179 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
24572139 TATATTGTTA
24572149 TATTATAT
1 TATTATAT
*
24572157 TATTATAA
1 TATTATAT
24572165 TATTATAT
1 TATTATAT
24572173 TATTATA
1 TATTATA
24572180 ATAAAACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTATAT
Found at i:24572167 original size:16 final size:16
Alignment explanation
Indices: 24572148--24572182 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
24572138 GTATATTGTT
24572148 ATATTATATTATTATA
1 ATATTATATTATTATA
24572164 ATATTATATTATTATA
1 ATATTATATTATTATA
24572180 ATA
1 ATA
24572183 AAACAAGNNN
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATATTATATTATTATA
Found at i:24575230 original size:44 final size:42
Alignment explanation
Indices: 24575159--24575266 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 42
24575149 AATGTGACAT
* * * *
24575159 CGTGTAAGACCACGTTTGAGACTTTGGCCTCG-ATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACTTTGGCCTCGTATAT--GA-TTA
*
24575203 CGTGTAAGACCATGTCTGGGA-TATTGGCGTCGTATATGATTA
1 CGTGTAAGACCATGTCTGGGACT-TTGGCCTCGTATATGATTA
*
24575245 CGTGTAAGACCCTGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
24575267 CATGTCTGGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
42 23 0.42
43 3 0.05
44 26 0.47
45 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACTTTGGCCTCGTATATGATTA
Found at i:24583708 original size:12 final size:12
Alignment explanation
Indices: 24583682--24583720 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
24583672 TTCTTTAATG
24583682 TTTATAGTAATAT
1 TTTATAGTAA-AT
24583695 TTTATAGTAAAT
1 TTTATAGTAAAT
* *
24583707 TTTACAGTCAAT
1 TTTATAGTAAAT
24583719 TT
1 TT
24583721 GATTGCCAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (12 bp):
TTTATAGTAAAT
Found at i:24584545 original size:21 final size:22
Alignment explanation
Indices: 24584504--24584546 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
24584494 TAAATTGATT
* *
24584504 CATTAAAATTGTAAAATATAAC
1 CATTAAAAATGTAAAACATAAC
24584526 CATTAAAAAT-TAAAACATAAC
1 CATTAAAAATGTAAAACATAAC
24584547 TAAGAAATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (22 bp):
CATTAAAAATGTAAAACATAAC
Found at i:24587374 original size:41 final size:41
Alignment explanation
Indices: 24587312--24587391 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
24587302 TTTGGCACAC
* *
24587312 GCCCGTGTGTCCCACACAACCTGACAA-ACGCCTGTGTGCGT
1 GCCCATGTGTCCCACACAACCTGA-AACACGCCTATGTGCGT
*
24587353 GCCCATGTGTCCCAGACAACCTGAAACACGCCTATGTGC
1 GCCCATGTGTCCCACACAACCTGAAACACGCCTATGTGC
24587392 CTCCAATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
40 2 0.06
41 33 0.94
ACGTcount: A:0.23, C:0.36, G:0.23, T:0.19
Consensus pattern (41 bp):
GCCCATGTGTCCCACACAACCTGAAACACGCCTATGTGCGT
Found at i:24593665 original size:19 final size:19
Alignment explanation
Indices: 24593641--24593681 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
24593631 CGAGTTGCAT
* *
24593641 ATGCAAATATTTGAATTTA
1 ATGCAAATACTTAAATTTA
24593660 ATGCAAATACTTAAATTTA
1 ATGCAAATACTTAAATTTA
24593679 ATG
1 ATG
24593682 AATAAAGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (19 bp):
ATGCAAATACTTAAATTTA
Found at i:24600856 original size:2 final size:2
Alignment explanation
Indices: 24600849--24600874 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24600839 ATGTTCTTTC
24600849 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
24600875 GGTTTTTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24605635 original size:7 final size:7
Alignment explanation
Indices: 24605623--24605672 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
24605613 TCAAAAAATG
24605623 TGAAAAA
1 TGAAAAA
24605630 TGAAAAA
1 TGAAAAA
24605637 TGAAAACA
1 TGAAAA-A
*
24605645 --AAGAA
1 TGAAAAA
24605650 TGAAAAA
1 TGAAAAA
24605657 TGAAAAA
1 TGAAAAA
24605664 -GTAAAAA
1 TG-AAAAA
24605671 TG
1 TG
24605673 GAGAGGCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
5 1 0.03
6 4 0.11
7 29 0.81
8 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.16, T:0.14
Consensus pattern (7 bp):
TGAAAAA
Found at i:24608052 original size:129 final size:128
Alignment explanation
Indices: 24607772--24608208 Score: 678
Period size: 129 Copynumber: 3.4 Consensus size: 128
24607762 NNNNNNNNNG
24607772 AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTG
1 AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTG
* * *
24607837 GAATAGGTTGGAAATCACAGATCTTGTCTCCCTAAGCAGTAGCAGAGTAGATGGAAGACGGCA
66 GAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATGGAAGACGGCA
* *
24607900 AATCTTATCTTCAAGAGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGTTAGCAGTG
1 AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTG
* * * *
24607965 GAATAGGATGGAAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCA-ATGCGAAAACGGCG
66 GAATAGGTTGG-AAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATG-GAAGACGGCA
* *
24608029 AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCATAAGTTCTATATCCCTGGTCAGCAGTG
1 AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTG
* * * **
24608094 GAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAACAATAACAGAGCAGATTGAAGACGATA
66 GAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATGGAAGACGGCA
* *
24608158 AATCTTATCTTAAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATC
1 AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATC
24608209 TTTGGTTCGC
Statistics
Matches: 279, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
128 76 0.27
129 199 0.71
130 4 0.01
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (128 bp):
AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTG
GAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATGGAAGACGGCA
Found at i:24608320 original size:44 final size:43
Alignment explanation
Indices: 24608252--24609350 Score: 349
Period size: 44 Copynumber: 25.4 Consensus size: 43
24608242 TCGCATCAGG
* *
24608252 TCTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGTAGT-GGACAGATTGAAGAAGCAAA
* * **
24608296 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAGAAGCA-AA
* * * * * * *
24608340 TTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAG-AAGCAAA
* * * * * * * **
24608384 TCTTATCTCTCTGAAGTTGCAGT--AGAG-TGGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGACAGATTGA-AGAAGCAAA
* *
24608425 TCTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGTAGT-GGACAGATTGAAGAAGCAAA
* * **
24608469 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAGAAGCA-AA
* * * * * * *
24608513 TTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAG-AAGCAAA
* * * * * * * **
24608557 TCTTATCTCTCTGAAGTTGCAGT--AGAG-TGGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGACAGATTGA-AGAAGCAAA
* *
24608598 TCTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGTAGT-GGACAGATTGAAGAAGCAAA
* * **
24608642 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAGAAGCA-AA
* * * * * * *
24608686 TTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAG-AAGCAAA
* * * * * * * **
24608730 TCTTATCTCTCTGAAGTTGCAGT--AGAG-TGGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGACAGATTGA-AGAAGCAAA
* *
24608771 TCTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGTAGT-GGACAGATTGAAGAAGCAAA
* * **
24608815 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAGAAGCA-AA
* * * * * * *
24608859 TTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAG-AAGCAAA
* * * * * * * **
24608903 TCTTATCTCTCTGAAGTTGCAGT--AGAG-TGGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGACAGATTGA-AGAAGCAAA
* **
24608944 TCTTATCTCCCT-AAGGTTGCAGTGGAGCAGATTGAAGCCG-ATAA
1 TCTTATCTCCCTGAA-GTTGTAGTGGA-CAGATTGAAGAAGCA-AA
* * * * * *
24608988 TCCT-TCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAG-AAGCAAA
* * * * * * * **
24609031 TCTTATCTCTCTGAAGTTGCAGT--AGAG-TGGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGACAGATTGA-AGAAGCAAA
* *
24609072 TCTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGTAGT-GGACAGATTGAAGAAGCAAA
* * **
24609116 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAGAAGCA-AA
* * * * * * *
24609160 TTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAG-AAGCAAA
* * * * * * * **
24609204 TCTTATCTCTCTGAAGTTGCAGT--AGAG-TGGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGACAGATTGA-AGAAGCAAA
* **
24609245 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAGAAGCA-AA
* * * * * * *
24609289 TTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGA-CAGATTGAAG-AAGCAAA
*
24609333 TCTTATCTCTCTGAAGTT
1 TCTTATCTCCCTGAAGTT
24609351 ACAGTAGCAT
Statistics
Matches: 758, Mismatches: 232, Indels: 130
0.68 0.21 0.12
Matches are distributed among these distances:
40 20 0.03
41 145 0.19
42 6 0.01
43 53 0.07
44 510 0.67
45 24 0.03
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGTAGTGGACAGATTGAAGAAGCAAA
Found at i:24608417 original size:173 final size:173
Alignment explanation
Indices: 24608220--24608968 Score: 1464
Period size: 173 Copynumber: 4.3 Consensus size: 173
24608210 TTGGTTCGCA
24608220 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
1 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
24608285 GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
66 GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
24608350 CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
131 CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
24608393 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
1 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
24608458 GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
66 GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
24608523 CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
131 CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
24608566 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
1 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
24608631 GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
66 GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
24608696 CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
131 CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
24608739 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
1 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
24608804 GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
66 GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
24608869 CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
131 CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
* *
24608912 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCT-AAGGTTGCAGTGG
1 TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAA-GTTGTAGTGG
24608969 AGCAGATTGA
Statistics
Matches: 573, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
172 2 0.00
173 571 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (173 bp):
TCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGTAGTGGGACAGATC
GAAGAAGCAAATCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTC
CTGAAGTTCTAGTGGAGCGGATTAAAGTAATAGATCTTATCTC
Found at i:24609040 original size:128 final size:129
Alignment explanation
Indices: 24608815--24609148 Score: 460
Period size: 128 Copynumber: 2.6 Consensus size: 129
24608805 AAGAAGCAAA
* * ** *
24608815 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
1 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTCTA
24608880 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
*
24608944 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCT-TCTCCCTGAAGTTGTA
1 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTCTA
*
24609008 GTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
* * * ** * *
24609072 TCTTATCCCCCTGAA-GTTGTAGTGG-GACAGATCGAAGAAGCA-AATCTTATCTCCCTGAGGTT
1 TCTTATCTCCCT-AAGGTTGCAGTGGAG-CAGATTGAAGCCG-ATAATCCTATCTCCCTGAAGTT
** *
24609134 GGAGTGGAGCAGATT
63 CTAGTGGAGCGGATT
24609149 GAAGCCGATA
Statistics
Matches: 184, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
127 1 0.01
128 112 0.61
129 71 0.39
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (129 bp):
TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTCTA
GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
Found at i:24609149 original size:301 final size:302
Alignment explanation
Indices: 24608642--24609398 Score: 1369
Period size: 301 Copynumber: 2.5 Consensus size: 302
24608632 AAGAAGCAAA
* *
24608642 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
1 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
24608707 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
24608772 CTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAATCTTATCTCCCTGAGGTTGGAG
131 CTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAATCTTATCTCCCTGAGGTTGGAG
24608837 TGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAATAG
196 TGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAATAG
24608902 ATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
261 ATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
** * *
24608944 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCT-TCTCCCTGAAGTTGTA
1 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
*
24609008 GTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
24609073 CTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAATCTTATCTCCCTGAGGTTGGAG
131 CTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAATCTTATCTCCCTGAGGTTGGAG
24609138 TGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAATAG
196 TGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAATAG
24609203 ATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
261 ATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
24609245 TCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCT
1 TCTTATCTCCCT-AAGGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCT
*
24609309 AGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGCA-TGGATCGCATCAG
65 AGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAG-AGTGGATCGCATCAG
* *
24609373 GTCTTATCTCCCT-AAGGTTGCAGTGG
129 GTCTTATCCCCCTGAA-GTTGTAGTGG
24609399 AGCAGACTGA
Statistics
Matches: 436, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
301 295 0.68
302 140 0.32
303 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (302 bp):
TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
CTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAATCTTATCTCCCTGAGGTTGGAG
TGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTAGTGGAGCGGATTAAAGTAATAG
ATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
Found at i:24609215 original size:173 final size:172
Alignment explanation
Indices: 24608944--24609269 Score: 562
Period size: 173 Copynumber: 1.9 Consensus size: 172
24608934 TCGCATCAGG
*
24608944 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTTCTCCCTGAAGTTGTAG
1 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTTCTCCCTGAAGTTCTAG
*
24609009 TGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTC
66 TGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTC
*
24609074 TTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAA
131 TTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGAAGCAAA
* * ** *
24609116 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
1 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCT-TCTCCCTGAAGTTCTA
24609181 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
65 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
*
24609246 CTTATCTCCCTGAAGTTGCAGTGG
130 CTTATCCCCCTGAAGTTGCAGTGG
24609270 AGCAGATTGA
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
172 44 0.31
173 100 0.69
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (172 bp):
TCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTTCTCCCTGAAGTTCTAG
TGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTC
TTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGAAGCAAA
Found at i:24609249 original size:129 final size:129
Alignment explanation
Indices: 24609116--24609404 Score: 526
Period size: 129 Copynumber: 2.2 Consensus size: 129
24609106 AAGAAGCAAA
*
24609116 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
*
24609181 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAG-AGTGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGCA-TGGATCGCATCAGG
*
24609245 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
24609310 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGCATGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGCATGGATCGCATCAGG
*
24609374 TCTTATCTCCCTAAGGTTGCAGTGGAGCAGA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
24609405 CTGAGAAAAC
Statistics
Matches: 154, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
129 153 0.99
130 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (129 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGCATGGATCGCATCAGG
Found at i:24609315 original size:173 final size:172
Alignment explanation
Indices: 24608944--24609321 Score: 539
Period size: 173 Copynumber: 2.2 Consensus size: 172
24608934 TCGCATCAGG
*
24608944 TCTTATCTCCCT-AAGGTT-GCAGTGGAGCAGATTGAAGCCGATAATCCTTCTCCCTGAAGTTGT
1 TCTTATCTCCCTGAA-GTTCG-AGTGGAGCAGATTGAAGCCGATAATCCTTCTCCCTGAAGTTCT
*
24609007 AGTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
64 AGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
*
24609072 TCTTATCCCCCTGAAGTTGTAGTGGGACAGATCGAAGAAGCAAA
129 TCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGAAGCAAA
* * ** *
24609116 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
1 TCTTATCTCCCTGAAGTTCGAGTGGAGCAGATTGAAGCCGATAATCCT-TCTCCCTGAAGTTCTA
24609181 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
65 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGT
* * **
24609246 CTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCCG-ATAA
130 CTTATCCCCCTGAAGTTGCAGTGGGA-CAGATCGAAGAAGCA-AA
* * * *
24609289 TTTTATCTTCCTGAAGTTCTAGTGGAGCGGATT
1 TCTTATCTCCCTGAAGTTCGAGTGGAGCAGATT
24609322 AAAGTAATAG
Statistics
Matches: 184, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
172 45 0.24
173 139 0.76
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (172 bp):
TCTTATCTCCCTGAAGTTCGAGTGGAGCAGATTGAAGCCGATAATCCTTCTCCCTGAAGTTCTAG
TGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTC
TTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGAAGCAAA
Found at i:24609442 original size:129 final size:129
Alignment explanation
Indices: 24609116--24609498 Score: 396
Period size: 129 Copynumber: 3.0 Consensus size: 129
24609106 AAGAAGCAAA
* * * *** * * ** *
24609116 TCTTATCTCCCTGAGGTTGGAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAACAATCTTATCCCCCTGAAGTTCCA
*
24609181 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATCGCATCAGG
* *** * * ** *
24609245 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCGATAATTTTATCTTCCTGAAGTTCTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAACAATCTTATCCCCCTGAAGTTCCA
24609310 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGCA-TGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAG-AGTGGATCGCATCAGG
*
24609374 TCTTATCTCCCT-AAGGTTGCAGTGGAGCAGACTG-AGAAAACAAGTCTTATCCCCCTGTAG-TC
1 TCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACTGAAGAAAACAA-TCTTATCCCCCTGAAGTTC
* * *** * * * * * **
24609436 ACAGTGGGGCAGACCGAAGAAATATATCTTATCGCTCTAAAGTTGCAGTAGAGCAGATCGCAT
64 -CAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATCGCAT
24609499 TAAGTCTTGC
Statistics
Matches: 224, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
128 10 0.04
129 213 0.95
130 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAACAATCTTATCCCCCTGAAGTTCCA
GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATCGCATCAGG
Found at i:24610933 original size:2 final size:2
Alignment explanation
Indices: 24610926--24610953 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
24610916 ATGTTCTTTC
24610926 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24610954 GGTTTTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24616307 original size:43 final size:43
Alignment explanation
Indices: 24616253--24616489 Score: 106
Period size: 43 Copynumber: 5.4 Consensus size: 43
24616243 TCCTGTACTG
24616253 GCAGTGAAGTAGATTGAAAACACCAGCCTTATCTTCCTGAGCA
1 GCAGTGAAGTAGATTGAAAACACCAGCCTTATCTTCCTGAGCA
* * * *** * * *
24616296 GCAGTGGAGTAGGTTGAAGATTGCAGATCTTGTAC-TCCAGTA-CTA
1 GCAGTGAAGTAGATTGAAAACACCAG-CCTTAT-CTTCCTG-AGC-A
* * * * * *
24616341 GCAATGAAGTAGATCGAAAACACCAACGTTATCTCCCTGAGTA
1 GCAGTGAAGTAGATTGAAAACACCAGCCTTATCTTCCTGAGCA
* * **** * *
24616384 GCAGTGGAGTA-AGTTGAAGATTGTAGATCTTGA-CTTCCTGTA-CT
1 GCAGTGAAGTAGA-TTGAAAACACCAG-CCTT-ATCTTCCTG-AGCA
* *
24616428 GACAGTGAAGTAGATCGAAAACACCAACCTTATCTTCCTGAGCA
1 G-CAGTGAAGTAGATTGAAAACACCAGCCTTATCTTCCTGAGCA
* * *
24616472 GTAGTGGAGTAGGTTGAA
1 GCAGTGAAGTAGATTGAA
24616490 GATTGTAGAT
Statistics
Matches: 128, Mismatches: 52, Indels: 28
0.62 0.25 0.13
Matches are distributed among these distances:
42 1 0.01
43 53 0.41
44 36 0.28
45 37 0.29
46 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (43 bp):
GCAGTGAAGTAGATTGAAAACACCAGCCTTATCTTCCTGAGCA
Found at i:24616381 original size:88 final size:88
Alignment explanation
Indices: 24616231--24616504 Score: 410
Period size: 88 Copynumber: 3.1 Consensus size: 88
24616221 NNNNNNNNNN
* *
24616231 TAGATCTTGT-CTTCCTGTACTGGCAGTGAAGTAGATTGAAAACACCAGCCTTATCTTCCTGAGC
1 TAGATCTTGTACTTCCTGTACT-GCAGTGAAGTAGATCGAAAACACCAACCTTATCTTCCTGAGC
24616295 AGCAGTGGAGTAGGTTGAAGATTG
65 AGCAGTGGAGTAGGTTGAAGATTG
* * * * * *
24616319 CAGATCTTGTAC-TCCAGTACTAGCAATGAAGTAGATCGAAAACACCAACGTTATCTCCCTGAGT
1 TAGATCTTGTACTTCCTGTACT-GCAGTGAAGTAGATCGAAAACACCAACCTTATCTTCCTGAGC
*
24616383 AGCAGTGGAGTAAGTTGAAGATTG
65 AGCAGTGGAGTAGGTTGAAGATTG
24616407 TAGATCTTG-ACTTCCTGTACTGACAGTGAAGTAGATCGAAAACACCAACCTTATCTTCCTGAGC
1 TAGATCTTGTACTTCCTGTACTG-CAGTGAAGTAGATCGAAAACACCAACCTTATCTTCCTGAGC
*
24616471 AGTAGTGGAGTAGGTTGAAGATTG
65 AGCAGTGGAGTAGGTTGAAGATTG
24616495 TAGATCTTGT
1 TAGATCTTGT
24616505 TTCCAACTCA
Statistics
Matches: 164, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
87 3 0.02
88 160 0.98
89 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (88 bp):
TAGATCTTGTACTTCCTGTACTGCAGTGAAGTAGATCGAAAACACCAACCTTATCTTCCTGAGCA
GCAGTGGAGTAGGTTGAAGATTG
Found at i:24618144 original size:17 final size:17
Alignment explanation
Indices: 24618122--24618154 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
24618112 TATTTAATTC
24618122 TTTTAATAT-ATTATATA
1 TTTTAA-ATCATTATATA
24618139 TTTTAAATCATTATAT
1 TTTTAAATCATTATAT
24618155 GTATAAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTAAATCATTATATA
Found at i:24618905 original size:106 final size:106
Alignment explanation
Indices: 24618671--24618961 Score: 431
Period size: 106 Copynumber: 2.7 Consensus size: 106
24618661 TTTCAAATTG
* * * * *
24618671 AGGCAATATTTAGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATATTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTCGA--TTTCT
* * *
24618736 CGTTCAACCAAATGGCTTAATATCCTTCATAAAAATTTCAAAATA
63 CGTTCAACCAAATAGCTAAATATCCTTCA-AAAAATTACAAAATA
24618781 AGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
1 AGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
24618846 TCAACCAAATAGCTAAATATCCTTTC-AAAAATTACAAAATA
66 TCAACCAAATAGCTAAATATCC-TTCAAAAAATTACAAAATA
* *
24618887 AGGCAATGTTTTGTGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
1 AGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
*
24618952 TTAACCAAAT
66 TCAACCAAAT
24618962 TGCCAAGTTT
Statistics
Matches: 169, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
106 86 0.51
107 28 0.17
108 3 0.02
109 25 0.15
110 27 0.16
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (106 bp):
AGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
TCAACCAAATAGCTAAATATCCTTCAAAAAATTACAAAATA
Found at i:24656422 original size:9 final size:9
Alignment explanation
Indices: 24656405--24656441 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
24656395 TGAGTTTTCG
24656405 AATTCGAAT
1 AATTCGAAT
*
24656414 AACTCGAAT
1 AATTCGAAT
24656423 AATTCGAAT
1 AATTCGAAT
24656432 AATTCGAAT
1 AATTCGAAT
24656441 A
1 A
24656442 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:24658803 original size:25 final size:22
Alignment explanation
Indices: 24658775--24658828 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 22
24658765 GTATATATTA
24658775 AAAAATATGTACATATATAATATAT
1 AAAAATATG--CATATA-AATATAT
* *
24658800 AAAAATATGCATGTAAATGTAT
1 AAAAATATGCATATAAATATAT
24658822 AAAAATA
1 AAAAATA
24658829 ATGAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 13 0.48
23 5 0.19
25 9 0.33
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (22 bp):
AAAAATATGCATATAAATATAT
Found at i:24659533 original size:26 final size:25
Alignment explanation
Indices: 24659485--24659533 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
24659475 TTGTTAGCTT
*
24659485 AAATAAAATAAAATGAAGATAAAGA
1 AAATAAAAAAAAATGAAGATAAAGA
24659510 AAATAATAAAAAAATGTAAG-TAAA
1 AAATAA-AAAAAAATG-AAGATAAA
24659534 AACGATGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.29
26 12 0.57
27 3 0.14
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.18
Consensus pattern (25 bp):
AAATAAAAAAAAATGAAGATAAAGA
Found at i:24660558 original size:44 final size:44
Alignment explanation
Indices: 24660505--24660886 Score: 343
Period size: 44 Copynumber: 8.6 Consensus size: 44
24660495 ACCAGTATGG
* *
24660505 GAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAATACAT
* * * * ***
24660549 GAAGACAAGATCTGTTCTCTTTGATCTACTCCACCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCA-CGCCAATACAT
* *
24660594 GGAGACAAGATCTGTTGTCTTTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAATACAT
**
24660638 GAAGACAAGATCTGTTTTCTTCAATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAATACAT
* * * ** *
24660682 GAAGATAAGATTTGCTTTCTTCAATCTACCTCACGCCAATACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAATACAT
* * * * * * *
24660726 GAAGATAAGATTTGTTTTCTTCGATCTACTTCGCCACCAGTATGA-
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTC-ACGCCAATA-CAT
* * * * * * * ***
24660771 GAAGACAAGATCTGCTTTATTTGATTTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTC-ACGCCAATACAT
* * * *
24660816 GAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAATACAT
* *
24660860 GAAGACAAGATCTGCTTTCTTCGATCT
1 GAAGACAAGATCTGTTTTCTTTGATCT
24660887 GTTTCGCCAC
Statistics
Matches: 279, Mismatches: 55, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
44 175 0.63
45 103 0.37
46 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (44 bp):
GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAATACAT
Found at i:24660633 original size:89 final size:88
Alignment explanation
Indices: 24660477--24660886 Score: 392
Period size: 89 Copynumber: 4.6 Consensus size: 88
24660467 AAATCCACCA
* * *
24660477 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCT-GTTTCTTTGATCTACTTCACGCC
*
24660542 AATACATGAAGACAAGATCTGTTC
65 AATACATGAAGACAAGATCTGTTT
* * *
24660566 TCTTTGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTGTCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTT-TCTTTGATCTACTTCACGCC
24660631 AATACATGAAGACAAGATCTGTTT
65 AATACATGAAGACAAGATCTGTTT
* * * *** * * ** *
24660655 TCTTCAATCTACTTCA-CGCCAATACATGAAGATAAGATTTGCTTTCTTCAATCTACCTCACGCC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTG-TTTCTTTGATCTACTTCACGCC
* *
24660719 AATACATGAAGATAAGATTTGTTT
65 AATACATGAAGACAAGATCTGTTT
* * * * * * *
24660743 TCTTCGATCTACTTCGCCACCAGTATGAGAAGACAAGATCTGCTTTATTTGATTTGCTTCGCCAC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTG-TTTCTTTGATCTACTTC-ACGC
* *** * * *
24660808 CAGTATGGGAAGGCAAGATCTGGTA
64 CAATACATGAAGACAAGATCTGTTT
* * *** *
24660833 TCTTTGATCTACTTCA-CGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTG-TTTCTTTGATCT
24660887 GTTTCGCCAC
Statistics
Matches: 259, Mismatches: 58, Indels: 8
0.80 0.18 0.02
Matches are distributed among these distances:
88 72 0.28
89 155 0.60
90 32 0.12
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (88 bp):
TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTTCTTTGATCTACTTCACGCCA
ATACATGAAGACAAGATCTGTTT
Found at i:24661417 original size:82 final size:82
Alignment explanation
Indices: 24661280--24661436 Score: 289
Period size: 82 Copynumber: 1.9 Consensus size: 82
24661270 TTCCCGTTGT
*
24661280 AACCCAGAGTAACAGAATTTGTCCTTTTCTCAATCCTCTGCTATCACAATTCAAGGATACAGAAC
1 AACCCAGAGTAAAAGAATTTGTCCTTTTCTCAATCCTCTGCTATCACAATTCAAGGATACAGAAC
24661345 GTGAAACTCTAACGGGA
66 GTGAAACTCTAACGGGA
24661362 AACCCAAGAGTAAAAG-ATTTGTCCTTTTCTCAATCCTCTGCTATCACAATTCAAGGATACAGAA
1 AACCC-AGAGTAAAAGAATTTGTCCTTTTCTCAATCCTCTGCTATCACAATTCAAGGATACAGAA
24661426 CGTGAAACTCT
65 CGTGAAACTCT
24661437 TTGGTCTCTT
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
82 64 0.88
83 9 0.12
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (82 bp):
AACCCAGAGTAAAAGAATTTGTCCTTTTCTCAATCCTCTGCTATCACAATTCAAGGATACAGAAC
GTGAAACTCTAACGGGA
Found at i:24662269 original size:8 final size:7
Alignment explanation
Indices: 24662225--24662266 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
24662215 TTAGCCTCTC
24662225 CATTTTT
1 CATTTTT
24662232 -ACTTTTT
1 CA-TTTTT
24662239 CATTTTT
1 CATTTTT
24662246 CA-TTTT
1 CATTTTT
24662252 CATCTTTT
1 CAT-TTTT
24662260 CATTTTT
1 CATTTTT
24662267 TCACATTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 7 0.23
7 16 0.52
8 8 0.26
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:24674214 original size:26 final size:25
Alignment explanation
Indices: 24674166--24674214 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
24674156 TTGTTAGCTT
*
24674166 AAATAAAATAAAATGAAGATAAAGA
1 AAATAAAAAAAAATGAAGATAAAGA
24674191 AAATAATAAAAAAATGTAAG-TAAA
1 AAATAA-AAAAAAATG-AAGATAAA
24674215 AACGATGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.29
26 12 0.57
27 3 0.14
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.18
Consensus pattern (25 bp):
AAATAAAAAAAAATGAAGATAAAGA
Found at i:24676588 original size:199 final size:199
Alignment explanation
Indices: 24676248--24676647 Score: 800
Period size: 199 Copynumber: 2.0 Consensus size: 199
24676238 GAGTTCTTGC
24676248 ATTTTTTTATTTAAAAATCTTGGTCCTTCCTTCTAATTTTGATGTTAAAGTTACTCATGTAGCAA
1 ATTTTTTTATTTAAAAATCTTGGTCCTTCCTTCTAATTTTGATGTTAAAGTTACTCATGTAGCAA
24676313 TTAAAAATGGTAAAAATAACTTTTTAGCCCTTAGTGTTTATAGATTTTTATTAATTTGATCATTA
66 TTAAAAATGGTAAAAATAACTTTTTAGCCCTTAGTGTTTATAGATTTTTATTAATTTGATCATTA
24676378 TTCTTTAAACTACATATTTTTTAAAAAAATTAAAAATTTAATTTTTTTCCATATTTTAAATAAAA
131 TTCTTTAAACTACATATTTTTTAAAAAAATTAAAAATTTAATTTTTTTCCATATTTTAAATAAAA
24676443 ACAA
196 ACAA
24676447 ATTTTTTTATTTAAAAATCTTGGTCCTTCCTTCTAATTTTGATGTTAAAGTTACTCATGTAGCAA
1 ATTTTTTTATTTAAAAATCTTGGTCCTTCCTTCTAATTTTGATGTTAAAGTTACTCATGTAGCAA
24676512 TTAAAAATGGTAAAAATAACTTTTTAGCCCTTAGTGTTTATAGATTTTTATTAATTTGATCATTA
66 TTAAAAATGGTAAAAATAACTTTTTAGCCCTTAGTGTTTATAGATTTTTATTAATTTGATCATTA
24676577 TTCTTTAAACTACATATTTTTTAAAAAAATTAAAAATTTAATTTTTTTCCATATTTTAAATAAAA
131 TTCTTTAAACTACATATTTTTTAAAAAAATTAAAAATTTAATTTTTTTCCATATTTTAAATAAAA
24676642 ACAA
196 ACAA
24676646 AT
1 AT
24676648 AATTTTAAAA
Statistics
Matches: 201, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
199 201 1.00
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (199 bp):
ATTTTTTTATTTAAAAATCTTGGTCCTTCCTTCTAATTTTGATGTTAAAGTTACTCATGTAGCAA
TTAAAAATGGTAAAAATAACTTTTTAGCCCTTAGTGTTTATAGATTTTTATTAATTTGATCATTA
TTCTTTAAACTACATATTTTTTAAAAAAATTAAAAATTTAATTTTTTTCCATATTTTAAATAAAA
ACAA
Found at i:24677048 original size:14 final size:14
Alignment explanation
Indices: 24677029--24677057 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24677019 ATTTTTGGAA
24677029 ATTATTATATTTTT
1 ATTATTATATTTTT
24677043 ATTATTATATTTTT
1 ATTATTATATTTTT
24677057 A
1 A
24677058 ATTTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTATTATATTTTT
Found at i:24683676 original size:12 final size:12
Alignment explanation
Indices: 24683661--24683690 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24683651 TTAATAAATC
24683661 TATTATGATTAT
1 TATTATGATTAT
24683673 TATTATGATTAT
1 TATTATGATTAT
*
24683685 TTTTAT
1 TATTAT
24683691 TTATTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TATTATGATTAT
Found at i:24685654 original size:27 final size:26
Alignment explanation
Indices: 24685632--24685862 Score: 232
Period size: 27 Copynumber: 8.6 Consensus size: 26
24685622 GCGTATAACA
24685632 GTCATTTTACCCTATGGGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
* * * *
24685658 GGTTATTCTACCCTATTAGGGGTATTTTG
1 -GTCATTTTACCCTA-TGGGGGTA-TTTC
*
24685687 GTCATTTTACCCTAT-AGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
** **
24685712 GATCATTTTACCCTATAAGGGTAAATC
1 G-TCATTTTACCCTATGGGGGTATTTC
*
24685739 GATCATTTTATCCTATGGAGGGTATTTC
1 G-TCATTTTACCCTATGG-GGGTATTTC
* *
24685767 GATCATTTTATCCTAT-GGGGTATTTTG
1 G-TCATTTTACCCTATGGGGGTA-TTTC
* *
24685794 GTCATTTTACCTTATGAGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
24685820 GGTCATTTTACCCTATGGGGGTATTTC
1 -GTCATTTTACCCTATGGGGGTATTTC
24685847 GATCATTTTACCCTAT
1 G-TCATTTTACCCTAT
24685863 TTTAGGGTCT
Statistics
Matches: 173, Mismatches: 22, Indels: 18
0.81 0.10 0.08
Matches are distributed among these distances:
25 4 0.02
26 40 0.23
27 84 0.49
28 42 0.24
29 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGGTATTTC
Found at i:24685814 original size:108 final size:108
Alignment explanation
Indices: 24685633--24685862 Score: 329
Period size: 108 Copynumber: 2.1 Consensus size: 108
24685623 CGTATAACAG
* *
24685633 TCATTTTACCCTATGGGGGTATTTCGGTTATTCTACCCTATTAGGGGTATTTTGGTCATTTTACC
1 TCATTTTACCCTATGGGGGTATTTCGATCATTCTACCCTATTAGGGGTATTTTGGTCATTTTACC
24685698 CTATAGGGTATTTCGATCATTTTACCCTATAAGGGTAAATCGA
66 CTATAGGGTATTTCGATCATTTTACCCTATAAGGGTAAATCGA
* * *
24685741 TCATTTTATCCTATGGAGGGTATTTCGATCATTTTATCCTA-T-GGGGTATTTTGGTCATTTTAC
1 TCATTTTACCCTATGG-GGGTATTTCGATCATTCTACCCTATTAGGGGTATTTTGGTCATTTTAC
* * ** **
24685804 CTTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGA
65 CCTAT-AGGGTATTTCGATCATTTTACCCTATAAGGGTAAATCGA
24685849 TCATTTTACCCTAT
1 TCATTTTACCCTAT
24685863 TTTAGGGTCT
Statistics
Matches: 108, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
107 25 0.23
108 63 0.58
109 20 0.19
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (108 bp):
TCATTTTACCCTATGGGGGTATTTCGATCATTCTACCCTATTAGGGGTATTTTGGTCATTTTACC
CTATAGGGTATTTCGATCATTTTACCCTATAAGGGTAAATCGA
Found at i:24685876 original size:81 final size:78
Alignment explanation
Indices: 24685632--24685862 Score: 273
Period size: 81 Copynumber: 2.9 Consensus size: 78
24685622 GCGTATAACA
* * * * * *
24685632 GTCATTTTACCCTATGGGGGTATTTCGGTTATTCTACCCTATTAGGGGTATTTTGGTCATTTTAC
1 GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTA-TGGGGGTATTTCGATCATTTTAC
24685697 CCTATAGGGTATTTCG
65 CCTATAGGGT-TTT-G
* * ** * * *
24685713 ATCATTTTACCCTATAAGGGTAAATCGATCATTTTATCCTATGGAGGGTATTTCGATCATTTTAT
1 GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGG-GGGTATTTCGATCATTTTAC
*
24685778 CCTATGGGGTATTTTG
65 CCTATAGGG--TTTTG
*
24685794 GTCATTTTACCTTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACC
1 GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACC
24685859 CTAT
66 CTAT
24685863 TTTAGGGTCT
Statistics
Matches: 125, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
80 26 0.21
81 95 0.76
82 3 0.02
83 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (78 bp):
GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACC
CTATAGGGTTTTG
Found at i:24693634 original size:23 final size:21
Alignment explanation
Indices: 24693592--24693637 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
24693582 TTTTAACGGT
**
24693592 TTATATTTTATTTATTTTAAA
1 TTATATTTTATTTACATTAAA
24693613 TTATATGTATTATTTACATTAAA
1 TTATAT-T-TTATTTACATTAAA
24693636 TT
1 TT
24693638 GTTCGATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 1 0.05
23 14 0.67
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TTATATTTTATTTACATTAAA
Found at i:24693682 original size:28 final size:24
Alignment explanation
Indices: 24693599--24693684 Score: 77
Period size: 23 Copynumber: 3.5 Consensus size: 24
24693589 GGTTTATATT
*
24693599 TTATTTATTTTAAATTATAT-G-TA
1 TTATTTATTTTAAATTGT-TCGATA
**
24693622 TTATTTACATTAAATTGTTCGATA
1 TTATTTATTTTAAATTGTTCGATA
*
24693646 TTATCTATTTTAAATTGTTTCGTATACA
1 TTATTTATTTTAAATTG-TTCG-AT--A
24693674 TTATTTATTTT
1 TTATTTATTTT
24693685 GGATTGCCTT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
22 1 0.02
23 16 0.32
24 16 0.32
25 4 0.08
26 2 0.04
28 11 0.22
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (24 bp):
TTATTTATTTTAAATTGTTCGATA
Found at i:24697472 original size:16 final size:16
Alignment explanation
Indices: 24697451--24697486 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
24697441 AATTATGGAG
*
24697451 ATATATGAAAGCATGT
1 ATATATAAAAGCATGT
*
24697467 ATATATAAAAGTATGT
1 ATATATAAAAGCATGT
24697483 ATAT
1 ATAT
24697487 GTATATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.14, T:0.36
Consensus pattern (16 bp):
ATATATAAAAGCATGT
Found at i:24698503 original size:16 final size:16
Alignment explanation
Indices: 24698479--24698511 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24698469 AATTTTAGTA
*
24698479 GCCTGCAATATTAATG
1 GCCTACAATATTAATG
24698495 GCCTACAATATTAATG
1 GCCTACAATATTAATG
24698511 G
1 G
24698512 TGTCTCGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (16 bp):
GCCTACAATATTAATG
Found at i:24699118 original size:125 final size:125
Alignment explanation
Indices: 24698878--24699249 Score: 575
Period size: 125 Copynumber: 3.0 Consensus size: 125
24698868 GGTTTTAGGC
* * * *
24698878 CCTGGAAGAAATAATTTCGAGTTGACATTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGA
1 CCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTCTACCAGGA
* * *
24698943 TGCTATT-TGAGAAGAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGT
65 TGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGT
* * * * *
24699004 CTTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGTAAATAGTATAAAATTGCTTCTACCAAGTT
1 CCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGAT
24699069 GCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGT
66 GCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGT
* *
24699129 CCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTGTAAAATCGCTTCTACTAGGAT
1 CCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGAT
* *
24699194 GCTTTATGAGAAGAATTTGTGAAATCGCACCCACGTGGATGCGCTTTTGCTACAGT
66 GCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
24699250 AGCATATTTG
Statistics
Matches: 224, Mismatches: 21, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
124 2 0.01
125 180 0.80
126 42 0.19
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (125 bp):
CCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGAT
GCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGT
Found at i:24700351 original size:25 final size:25
Alignment explanation
Indices: 24700323--24700370 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
24700313 TCAAGAAAAT
24700323 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
24700348 TTCTATTTTATTACATCAAATAA
1 TTCTATTTTATTACATCAAATAA
24700371 TATCAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:24700837 original size:18 final size:18
Alignment explanation
Indices: 24700799--24700838 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24700789 GACTCGGAAA
* * *
24700799 AGGATACATATAAGGGTT
1 AGGAGACATATAAGAGCT
24700817 AGGAGACATATAAGAGCT
1 AGGAGACATATAAGAGCT
24700835 AGGA
1 AGGA
24700839 AACGCACCTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.07, G:0.30, T:0.20
Consensus pattern (18 bp):
AGGAGACATATAAGAGCT
Found at i:24706519 original size:29 final size:29
Alignment explanation
Indices: 24706477--24706535 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
24706467 GTTACAGTCG
24706477 AATTATGAGGGTTATGACCTCAAGTAAAA
1 AATTATGAGGGTTATGACCTCAAGTAAAA
24706506 AATTATGAGGGTTATGACCTCAAGTAAAA
1 AATTATGAGGGTTATGACCTCAAGTAAAA
24706535 A
1 A
24706536 CATTCGCACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.27
Consensus pattern (29 bp):
AATTATGAGGGTTATGACCTCAAGTAAAA
Found at i:24716114 original size:13 final size:13
Alignment explanation
Indices: 24716096--24716120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24716086 TAATTTAATA
24716096 TTATTTTGTGTGT
1 TTATTTTGTGTGT
24716109 TTATTTTGTGTG
1 TTATTTTGTGTG
24716121 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:24716903 original size:112 final size:112
Alignment explanation
Indices: 24716623--24717185 Score: 922
Period size: 112 Copynumber: 5.0 Consensus size: 112
24716613 TTAAATCAGC
* * *
24716623 ATATATATGTATGTATAACTATTGTACATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
1 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
24716688 TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATATGT
66 TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATA--T
24716737 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
1 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
24716802 TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATAT
66 TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATAT
24716849 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
1 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
24716914 TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATAT
66 TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATAT
*
24716961 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAAT
1 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
**
24717026 TAGTTAAGTATGAATGTTATATATATACACATAAATGAAGTTCG---A-
66 TAGTTAAGTATGAATG--ATATATATATGCATAAATGAAGTTCGAATAT
* *
24717071 ATATGTATATA--TATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAAT
1 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
* * **
24717134 TAGTTAAGTATGAATGTTATATATATGCACATGTGTAAGGTTCGAATAT
66 TAGTTAAGTATGAATGATATATATATGCATAAATG-AA-GTTCGAATAT
24717183 ATA
1 ATA
24717186 GTTATGTGTA
Statistics
Matches: 428, Mismatches: 13, Indels: 18
0.93 0.03 0.04
Matches are distributed among these distances:
106 13 0.03
107 2 0.00
108 73 0.17
110 10 0.02
111 2 0.00
112 196 0.46
114 132 0.31
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (112 bp):
ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATAT
Found at i:24717050 original size:226 final size:220
Alignment explanation
Indices: 24716623--24717185 Score: 914
Period size: 226 Copynumber: 2.5 Consensus size: 220
24716613 TTAAATCAGC
* * *
24716623 ATATATATGTATGTATAACTATTGTACATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
1 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
24716688 TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATATGTATATATATATATGTAT
66 TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATA--TATATATATATATGTAT
24716753 ATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAATTAGTTAAGTATGAATG
129 ATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAATTAGTTAAGTATGAATG
**
24716818 ATATATATATGCATAAATGAAGTTCGAATA
194 ATATATATACACATAAATGAAGTTCG---A
24716848 TATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAA
1 -ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAA
24716913 TTAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATATATATATATATATGTATA
65 TTAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATATATATATATATATGTATA
*
24716978 TCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAATTAGTTAAGTATGAATGT
130 TCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAATTAGTTAAGTATGAATG-
24717043 TATATATATACACATAAATGAAGTTCGA
194 -ATATATATACACATAAATGAAGTTCGA
* *
24717071 ATATGTATATA--TATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAAT
1 ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
* * **
24717134 TAGTTAAGTATGAATGTTATATATATGCACATGTGTAAGGTTCGAATATATA
66 TAGTTAAGTATGAATGATATATATATGCATAAATG-AA-GTTCGAATATATA
24717186 GTTATGTGTA
Statistics
Matches: 321, Mismatches: 12, Indels: 12
0.93 0.03 0.03
Matches are distributed among these distances:
220 82 0.26
221 2 0.01
222 23 0.07
223 1 0.00
224 81 0.25
226 132 0.41
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (220 bp):
ATATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAAT
TAGTTAAGTATGAATGATATATATATGCATAAATGAAGTTCGAATATATATATATATATGTATAT
CTATTGTATATTTGATGAGCTATAATTAAAAGTATACGAATTGAAATTAGTTAAGTATGAATGAT
ATATATACACATAAATGAAGTTCGA
Found at i:24724400 original size:16 final size:16
Alignment explanation
Indices: 24724379--24724409 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24724369 CCGGCCAAGT
*
24724379 ACATGAATGTTCAGCC
1 ACATGAATGTCCAGCC
24724395 ACATGAATGTCCAGC
1 ACATGAATGTCCAGC
24724410 TACTTGTTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (16 bp):
ACATGAATGTCCAGCC
Found at i:24726581 original size:12 final size:12
Alignment explanation
Indices: 24726564--24726597 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
24726554 CGTCCCGCCC
24726564 ATATTAATTTTT
1 ATATTAATTTTT
*
24726576 ATATTATTTTTT
1 ATATTAATTTTT
24726588 ATA-TAATTTT
1 ATATTAATTTT
24726598 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:24726765 original size:30 final size:30
Alignment explanation
Indices: 24726724--24726782 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
24726714 TAACAAGTAA
24726724 ATGTCTCTAAAATAATAACAAAATTAACAG
1 ATGTCTCTAAAATAATAACAAAATTAACAG
*
24726754 ATGTCTTTAAAATAATAACAAAATTAACA
1 ATGTCTCTAAAATAATAACAAAATTAACA
24726783 ATAAAATAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (30 bp):
ATGTCTCTAAAATAATAACAAAATTAACAG
Found at i:24731415 original size:26 final size:26
Alignment explanation
Indices: 24731382--24731437 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
24731372 TCCCCTAAGA
24731382 TTTC-CATGGAGGGGATAATTTCCAT
1 TTTCGCATGGAGGGGATAATTTCCAT
24731407 TTTCGCATGGAGGGGATAATTTCCAT
1 TTTCGCATGGAGGGGATAATTTCCAT
24731433 TTTCG
1 TTTCG
24731438 TCCTTCTACT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (26 bp):
TTTCGCATGGAGGGGATAATTTCCAT
Found at i:24737889 original size:23 final size:23
Alignment explanation
Indices: 24737858--24737908 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
24737848 ACCTACTTTC
* *
24737858 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
24737881 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
24737904 TTACA
1 TTACA
24737909 CGTATAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:24739251 original size:53 final size:53
Alignment explanation
Indices: 24739188--24739339 Score: 250
Period size: 53 Copynumber: 2.8 Consensus size: 53
24739178 GGAATGATAG
* *
24739188 AAATTTGAGCTACAATCTCTAAAGTTTGTTGAGTGCAAAGAAATCTTATTTAT
1 AAATTTGAGCTACAATCTCTGAAGTTTGTTGAATGCAAAGAAATCTTATTTAT
*
24739241 AAATTTGAGCTACAATCTCTGAAGTTTATTGAATGCAAAGAAATCTTATTTAT
1 AAATTTGAGCTACAATCTCTGAAGTTTGTTGAATGCAAAGAAATCTTATTTAT
* *
24739294 AAATTTGAGCTACAATCTTTGGAAGTTTGTTGAATGCAAGGAAATC
1 AAATTTGAGCTACAATCTCT-GAAGTTTGTTGAATGCAAAGAAATC
24739340 CTTTGATGCT
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 69 0.75
54 23 0.25
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (53 bp):
AAATTTGAGCTACAATCTCTGAAGTTTGTTGAATGCAAAGAAATCTTATTTAT
Found at i:24739400 original size:24 final size:24
Alignment explanation
Indices: 24739373--24739422 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
24739363 GTTTCGATCT
*
24739373 AAGGGTCACCTAGACTTTATCTTG
1 AAGGGTCACCAAGACTTTATCTTG
* *
24739397 AAGGGTCATCAAGATTTTATCTTG
1 AAGGGTCACCAAGACTTTATCTTG
24739421 AA
1 AA
24739423 ATGCATTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (24 bp):
AAGGGTCACCAAGACTTTATCTTG
Found at i:24744489 original size:9 final size:9
Alignment explanation
Indices: 24744474--24744532 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 9
24744464 TTTTGGTTAA
24744474 AAATTAACC
1 AAATTAACC
* *
24744483 GAATTAACT
1 AAATTAACC
* *
24744492 GAATTACCC
1 AAATTAACC
*
24744501 GAATTAACC
1 AAATTAACC
24744510 AAATTAACC
1 AAATTAACC
24744519 AAATTAACC
1 AAATTAACC
24744528 AAATT
1 AAATT
24744533 GAATCACTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.25
Consensus pattern (9 bp):
AAATTAACC
Found at i:24744514 original size:18 final size:18
Alignment explanation
Indices: 24744474--24744532 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
24744464 TTTTGGTTAA
*
24744474 AAATTAACCGAATTAACT
1 AAATTAACCGAATTAACC
* *
24744492 GAATTACCCGAATTAACC
1 AAATTAACCGAATTAACC
*
24744510 AAATTAACCAAATTAACC
1 AAATTAACCGAATTAACC
24744528 AAATT
1 AAATT
24744533 GAATCACTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.25
Consensus pattern (18 bp):
AAATTAACCGAATTAACC
Found at i:24744679 original size:18 final size:18
Alignment explanation
Indices: 24744639--24744682 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24744629 TAATTTTATG
**
24744639 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
24744657 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
24744675 CTTGGGTT
1 ATTGGGTT
24744683 TAGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:24749162 original size:14 final size:14
Alignment explanation
Indices: 24749143--24749169 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24749133 TAAAACAATG
24749143 AAAATATTTTACGA
1 AAAATATTTTACGA
24749157 AAAATATTTTACG
1 AAAATATTTTACG
24749170 TGCAAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.37
Consensus pattern (14 bp):
AAAATATTTTACGA
Found at i:24751020 original size:2 final size:2
Alignment explanation
Indices: 24751009--24751043 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
24750999 GGCTTTACAT
24751009 GA GA -A GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
24751044 AATAATTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:24761190 original size:27 final size:25
Alignment explanation
Indices: 24761138--24761195 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 25
24761128 AAAGCTATTT
*
24761138 TTATATAATAATAATTTTAGTTTAA
1 TTATATAATAATAATTTTAGTATAA
24761163 TTATATAAT-ATATATTTTAAGATATAA
1 TTATATAATAATA-ATTTT-AG-TATAA
*
24761190 TCATAT
1 TTATAT
24761196 TATTTTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 3 0.11
25 14 0.50
26 2 0.07
27 9 0.32
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (25 bp):
TTATATAATAATAATTTTAGTATAA
Found at i:24762105 original size:20 final size:21
Alignment explanation
Indices: 24762059--24762106 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
24762049 TTATAAGAAG
24762059 TGTTATGAAATTTTTTGAACAA
1 TGTTAT-AAATTTTTTGAACAA
* *
24762081 T-TTATAATTTTTTTTAA-AA
1 TGTTATAAATTTTTTGAACAA
24762100 TGTTATA
1 TGTTATA
24762107 TATTATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 4 0.17
22 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.54
Consensus pattern (21 bp):
TGTTATAAATTTTTTGAACAA
Found at i:24762116 original size:168 final size:168
Alignment explanation
Indices: 24761931--24762619 Score: 1378
Period size: 168 Copynumber: 4.1 Consensus size: 168
24761921 TTATTTGTCT
24761931 ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
1 ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
24761996 AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
66 AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
24762061 TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
131 TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
24762099 ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
1 ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
24762164 AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
66 AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
24762229 TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
131 TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
24762267 ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
1 ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
24762332 AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
66 AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
24762397 TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
131 TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
24762435 ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
1 ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
24762500 AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
66 AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
24762565 TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
131 TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
24762603 ATGTTATATATTATAAA
1 ATGTTATATATTATAAA
24762620 TTTTATATTA
Statistics
Matches: 521, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
168 521 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (168 bp):
ATGTTATATATTATAAAAACAATATACTTATATATTAAAAAATATTACAGTTTTTTTCTTATCAT
AACTTATTTATAAAAGAAAAACTTTCTAAAGTTATGACAAAAAATTATATTATTTATAAGAAGTG
TTATGAAATTTTTTGAACAATTTATAATTTTTTTTAAA
Found at i:24762273 original size:20 final size:21
Alignment explanation
Indices: 24762227--24762274 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
24762217 TTATAAGAAG
24762227 TGTTATGAAATTTTTTGAACAA
1 TGTTAT-AAATTTTTTGAACAA
* *
24762249 T-TTATAATTTTTTTTAA-AA
1 TGTTATAAATTTTTTGAACAA
24762268 TGTTATA
1 TGTTATA
24762275 TATTATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 4 0.17
22 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.54
Consensus pattern (21 bp):
TGTTATAAATTTTTTGAACAA
Found at i:24762441 original size:20 final size:21
Alignment explanation
Indices: 24762395--24762442 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
24762385 TTATAAGAAG
24762395 TGTTATGAAATTTTTTGAACAA
1 TGTTAT-AAATTTTTTGAACAA
* *
24762417 T-TTATAATTTTTTTTAA-AA
1 TGTTATAAATTTTTTGAACAA
24762436 TGTTATA
1 TGTTATA
24762443 TATTATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 4 0.17
22 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.54
Consensus pattern (21 bp):
TGTTATAAATTTTTTGAACAA
Found at i:24762609 original size:20 final size:21
Alignment explanation
Indices: 24762563--24762610 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
24762553 TTATAAGAAG
24762563 TGTTATGAAATTTTTTGAACAA
1 TGTTAT-AAATTTTTTGAACAA
* *
24762585 T-TTATAATTTTTTTTAA-AA
1 TGTTATAAATTTTTTGAACAA
24762604 TGTTATA
1 TGTTATA
24762611 TATTATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 4 0.17
22 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.54
Consensus pattern (21 bp):
TGTTATAAATTTTTTGAACAA
Found at i:24765729 original size:19 final size:19
Alignment explanation
Indices: 24765667--24765733 Score: 68
Period size: 19 Copynumber: 3.5 Consensus size: 19
24765657 TATATGAATT
24765667 AATAAAAAA-AAAG-AAAGGA
1 AATAAAAAATAAAGTAAA--A
24765686 AATAAAGAAATAAAGTAAAA
1 AATAAA-AAATAAAGTAAAA
*
24765706 GATAAAAAGATAAA-TAAAA
1 AATAAAAA-ATAAAGTAAAA
24765725 AATAAAAAA
1 AATAAAAAA
24765734 AATGTATTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
18 1 0.02
19 20 0.48
20 14 0.33
21 4 0.10
22 3 0.07
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (19 bp):
AATAAAAAATAAAGTAAAA
Found at i:24770839 original size:18 final size:18
Alignment explanation
Indices: 24770789--24770842 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
24770779 ATGATGATAG
24770789 TGATTCCGAGGATGGAAG-
1 TGATTCCGAGGAT-GAAGA
* * *
24770807 TGGTTCTGATGATGAAGA
1 TGATTCCGAGGATGAAGA
24770825 TGATTCCGAGGATGAAGA
1 TGATTCCGAGGATGAAGA
24770843 CGAAGAGGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (18 bp):
TGATTCCGAGGATGAAGA
Found at i:24772869 original size:159 final size:151
Alignment explanation
Indices: 24772343--24772843 Score: 783
Period size: 151 Copynumber: 3.3 Consensus size: 151
24772333 TGAACAGTTG
24772343 GCTGGTTTGCCCGAGAGGTTAAGGGGGCAGACTTAAGATCTGCTGCACAAAAGTGCGCGTGAGTT
1 GCTGGTTTGCCCGAGAGGTTAAGGGGGCAGACTTAAGATCTGCTGCACAAAAGTGCGCGTGAGTT
*
24772408 CGAACCTCACAGCCAGCAAATTTTAATTTTTTTATTACTTTTTTTGCTTTATATATTATAATGAA
66 CGAACCTCACAGCCAGCAAATTTTAATTTTTTTATTACATTTTTTGCTTTATATATTATAATGAA
24772473 AAGATAATTGTGAAACGAACA
131 AAGATAATTGTGAAACGAACA
24772494 GCTGGTTTGCCCGAGAGGTTAAGGGGGCAGACTTAAGATCTGCTGCACAAAAGTGCGCGTGAGTT
1 GCTGGTTTGCCCGAGAGGTTAAGGGGGCAGACTTAAGATCTGCTGCACAAAAGTGCGCGTGAGTT
24772559 CGAACCTCACAGCCAGCAAATTTTAATTTTTTTATTACATTTTTTGCTTTATATATTATAATGAA
66 CGAACCTCACAGCCAGCAAATTTTAATTTTTTTATTACATTTTTTGCTTTATATATTATAATGAA
24772624 AAGATAATTGTGAAACGAACA
131 AAGATAATTGTGAAACGAACA
*
24772645 GCTGGTTTGCCCGAGAGGTTAAGGGGGCAGACTTAAGATCTGCTGCACATAAGTGCGCGTGAGTT
1 GCTGGTTTGCCCGAGAGGTTAAGGGGGCAGACTTAAGATCTGCTGCACAAAAGTGCGCGTGAGTT
* * * * *
24772710 CGAACCTCACAGCCAGCAAAATATAAATTTATTT-TTAC-TTTCTTGCTTTATATATTACAAT-A
66 CGAACCTCACAGCCAGC-AAATTTTAATTTTTTTATTACATTTTTTGCTTTATATATTATAATGA
* **
24772772 TGAATTTAATTGTGAAATGAACATTGGAATCA
130 -AAAGATAATTGTG--A--AAC----GAA-CA
*
24772804 GCTGGTTTGCCCGAGAGGTTAAGGAGGCAGACTTAAGATC
1 GCTGGTTTGCCCGAGAGGTTAAGGGGGCAGACTTAAGATC
24772844 AAATACACAT
Statistics
Matches: 328, Mismatches: 11, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
149 1 0.00
150 31 0.09
151 235 0.72
152 14 0.04
154 3 0.01
158 3 0.01
159 41 0.12
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.31
Consensus pattern (151 bp):
GCTGGTTTGCCCGAGAGGTTAAGGGGGCAGACTTAAGATCTGCTGCACAAAAGTGCGCGTGAGTT
CGAACCTCACAGCCAGCAAATTTTAATTTTTTTATTACATTTTTTGCTTTATATATTATAATGAA
AAGATAATTGTGAAACGAACA
Found at i:24780618 original size:31 final size:31
Alignment explanation
Indices: 24780583--24780643 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
24780573 TTAATAGCCC
* **
24780583 AATGAGTTAAATAAAAACTTTTGAATAGTTA
1 AATGACTTAAATAAAAACTTTCAAATAGTTA
**
24780614 AATGACTTAAATGGAAACTTTCAAATAGTT
1 AATGACTTAAATAAAAACTTTCAAATAGTT
24780644 TAGTGACCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (31 bp):
AATGACTTAAATAAAAACTTTCAAATAGTTA
Found at i:24799343 original size:70 final size:69
Alignment explanation
Indices: 24799189--24799919 Score: 340
Period size: 69 Copynumber: 10.5 Consensus size: 69
24799179 GGACAGCCCT
* * * * * *
24799189 TATACATCAATTT-GGATAGCATTTATATACCAAACT-AGACAACATTTTCACACCAAAATTTGG
1 TATACAACAATTTAGG-CAGCATATATATAACAAATTGAG-CAACATTTT-ACATCAAAA-TTGG
24799252 ACAGCATA
62 ACAGCATA
24799260 TATACAACAATTTAGGCAGCATATATATAACAAATTGAGCAACACTTTTACATCAAAATTGGACA
1 TATACAACAATTTAGGCAGCATATATATAACAAATTGAGCAACA-TTTTACATCAAAATTGGACA
24799325 GCATA
65 GCATA
* *
24799330 TATACAACAATTTAGGCAGCGTATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACA
1 TATACAACAATTTAGGCAGCATATATATAACAAATTGAGCAACA-TTTTACATCAAAATTGGACA
*
24799395 GTATA
65 GCATA
* * * * * ** * * *
24799400 TATACAACAATTTAGGCAGCATAAATACAACGAATTGGGCAGCATAAATACAAC-GAATTGGGCA
1 TATACAACAATTTAGGCAGCATATATATAACAAATTGAGCAACAT-TTTACATCAAAATTGGACA
24799464 GCATA
65 GCATA
* * * * * * * ** * * *
24799469 AATACAACGAA-TTGGGCAGCATAAATACAACGAATTGGGCAGCATAAATACAAC-GAATTGGGC
1 TATACAAC-AATTTAGGCAGCATATATATAACAAATTGAGCAACAT-TTTACATCAAAATTGGAC
24799532 AGCATA
64 AGCATA
* * * * * * * ** * * *
24799538 AATACAACGAA-TTGGGCAGCATAAATACAACGAATTGGGCAGCATAAATACAAC-GAATTGGGC
1 TATACAAC-AATTTAGGCAGCATATATATAACAAATTGAGCAACAT-TTTACATCAAAATTGGAC
24799601 AGCATA
64 AGCATA
* * * * * * * ** * * *
24799607 AATACAACGAA-TTGGGCAGCATAAATACAACGAATTGGGCAGCATAAATACAAC-GAATTGGGC
1 TATACAAC-AATTTAGGCAGCATATATATAACAAATTGAGCAACAT-TTTACATCAAAATTGGAC
24799670 AGCATA
64 AGCATA
* * * * * * * ** * * *
24799676 AATACAACGAA-TTGGGCAGCATAAATACAACGAATTGGGCAGCATAAATACAAC-GAATTGGGC
1 TATACAAC-AATTTAGGCAGCATATATATAACAAATTGAGCAACAT-TTTACATCAAAATTGGAC
24799739 AGCATA
64 AGCATA
* * * * * * * ** * * *
24799745 AATACAACGAA-TTGGGCAGCATAAATACAACGAATTGGGCAGCATAAATACAAC-GAATTGGGC
1 TATACAAC-AATTTAGGCAGCATATATATAACAAATTGAGCAACAT-TTTACATCAAAATTGGAC
24799808 AGCATA
64 AGCATA
* * * * * * * ** * * *
24799814 AATACAACGAA-TTGGGCAGCATAAATACAACGAATTGGGCAGCATAAATACAAC-GAATTGGGC
1 TATACAAC-AATTTAGGCAGCATATATATAACAAATTGAGCAACAT-TTTACATCAAAATTGGAC
24799877 AGCATA
64 AGCATA
* * *
24799883 TATACAACAATTTAGGCAGCATAAATACAACGAATTG
1 TATACAACAATTTAGGCAGCATATATATAACAAATTG
24799920 GGCAGCATAA
Statistics
Matches: 627, Mismatches: 27, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
68 2 0.00
69 454 0.72
70 122 0.19
71 41 0.07
72 8 0.01
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.21
Consensus pattern (69 bp):
TATACAACAATTTAGGCAGCATATATATAACAAATTGAGCAACATTTTACATCAAAATTGGACAG
CATA
Found at i:24799427 original size:23 final size:23
Alignment explanation
Indices: 24799386--24799950 Score: 1044
Period size: 23 Copynumber: 24.6 Consensus size: 23
24799376 TTTACATCAA
* * *
24799386 AATTGGACAGTATATATACAAC-
1 AATTGGGCAGCATAAATACAACG
*
24799408 AATTTAGGCAGCATAAATACAACG
1 AA-TTGGGCAGCATAAATACAACG
24799432 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799455 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799478 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799501 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799524 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799547 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799570 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799593 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799616 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799639 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799662 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799685 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799708 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799731 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799754 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799777 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799800 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799823 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799846 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
*
24799869 AATTGGGCAGCATATATACAAC-
1 AATTGGGCAGCATAAATACAACG
*
24799891 AATTTAGGCAGCATAAATACAACG
1 AA-TTGGGCAGCATAAATACAACG
24799915 AATTGGGCAGCATAAATACAACG
1 AATTGGGCAGCATAAATACAACG
24799938 AATTGGGCAGCAT
1 AATTGGGCAGCAT
24799951 TTAAGCATCA
Statistics
Matches: 530, Mismatches: 9, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
22 4 0.01
23 522 0.98
24 4 0.01
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.18
Consensus pattern (23 bp):
AATTGGGCAGCATAAATACAACG
Found at i:24808225 original size:26 final size:26
Alignment explanation
Indices: 24808196--24808258 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 26
24808186 ATTCTTTTGG
24808196 TTTTTAAAATT-ATTATTT-TATT-CTCA
1 TTTTTAAAATTAATT-TTTGT-TTCCT-A
*
24808222 TTTTCAAAATTAATTTTTGTTTCCTA
1 TTTTTAAAATTAATTTTTGTTTCCTA
24808248 TTTTTAAAATT
1 TTTTTAAAATT
24808259 TCATGTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 26 0.81
27 6 0.19
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTTTAAAATTAATTTTTGTTTCCTA
Found at i:24809713 original size:17 final size:16
Alignment explanation
Indices: 24809662--24809711 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
24809652 ATATTCAATT
*
24809662 ATTCGAAAATAATTTGA
1 ATTCGAAAA-AATTTAA
*
24809679 ATT-TAAAAATATTTAA
1 ATTCGAAAAA-ATTTAA
24809695 ATTCGAAAAAATTTAA
1 ATTCGAAAAAATTTAA
24809711 A
1 A
24809712 ATATTCAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 1 0.04
16 19 0.68
17 8 0.29
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTCGAAAAAATTTAA
Found at i:24812889 original size:262 final size:265
Alignment explanation
Indices: 24812417--24812916 Score: 686
Period size: 262 Copynumber: 1.9 Consensus size: 265
24812407 TTTAAAGGTC
* **
24812417 AAATTATATGTTCAAACTCAAAGACTCATTTAATTTGAAAAGGTTTCATGAAAATTATTAAGCCC
1 AAATTATATGTTCAAACTCAAAGACTCATTTAATTTGAAAAGGTTTAAAAAAAATTATTAAGCCC
* * * * *
24812482 AAAAAGTGGATTTTGACAAAAATCTAGACTCGTCTAGAAATGTGTAGGCTTAAGTTTCCATATTT
66 AAAAAATGGACTTGGACAAAAA-CTAGACTCGTCTAGAAATGGGTAGGCTTAAGTCTCCATATTT
* * *
24812547 AAGACCCAAGCCCAGTTCAACCCTTTTTAATTTTATAATGCGCTATTCTTTCATTTGTTCTTATA
130 AAGACCCAAGCCCAGCTCAACCCTTTTTAATTCTATAATGCACTATTCTTTCATTTGTTCTTATA
*
24812612 TAGATTATGTAATTTATATCATATAAAAATTATATATTTGTATTACTTGAAACTAGACATATCCA
195 TAGATTATATAATTTATATCATATAAAAATTATATATTTGTATTACTTGAAACTAGACATATCCA
24812677 AACATG
260 AACATG
* * * * * * *
24812683 AAATTATATGTTCAAACTCAAGGGCTCATTTGATTTGAGAAGATTTTAAAAAAAATTATTAGGTC
1 AAATTATATGTTCAAACTCAAAGACTCATTTAATTTGAAAAG-GTTTAAAAAAAATTATTAAGCC
* * * *
24812748 CAAAAAATGG-CTTGGGCAAAAA-TAGGCTCGTCTAGAAATGGGTAGGTTTGAG-CTCCAATATT
65 CAAAAAATGGACTTGGACAAAAACTAGACTCGTCTAGAAATGGGTAGGCTTAAGTCTCC-ATATT
* * **
24812810 TAAGACCCAAG-CCAGCTCGA-CCTTTTTAATTCTATAATGCATTATTCTTTTGTTTGTTCTTAT
129 TAAGACCCAAGCCCAGCTCAACCCTTTTTAATTCTATAATGCACTATTCTTTCATTTGTTCTTAT
*
24812873 ATATATTATATAATTTATATCATATAAAAATTATATATTTGTAT
194 ATAGATTATATAATTTATATCATATAAAAATTATATATTTGTAT
24812917 GAAATATATA
Statistics
Matches: 204, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
262 80 0.39
263 10 0.05
264 42 0.21
266 47 0.23
267 25 0.12
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38
Consensus pattern (265 bp):
AAATTATATGTTCAAACTCAAAGACTCATTTAATTTGAAAAGGTTTAAAAAAAATTATTAAGCCC
AAAAAATGGACTTGGACAAAAACTAGACTCGTCTAGAAATGGGTAGGCTTAAGTCTCCATATTTA
AGACCCAAGCCCAGCTCAACCCTTTTTAATTCTATAATGCACTATTCTTTCATTTGTTCTTATAT
AGATTATATAATTTATATCATATAAAAATTATATATTTGTATTACTTGAAACTAGACATATCCAA
ACATG
Found at i:24816315 original size:7 final size:7
Alignment explanation
Indices: 24816303--24816338 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
24816293 TTAAACTCTT
24816303 TTATTTA
1 TTATTTA
24816310 TTATTTA
1 TTATTTA
24816317 TTATTTA
1 TTATTTA
24816324 TTATTTA
1 TTATTTA
24816331 TTATTTA
1 TTATTTA
24816338 T
1 T
24816339 CTCTTATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:24816345 original size:14 final size:14
Alignment explanation
Indices: 24816303--24816352 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
24816293 TTAAACTCTT
*
24816303 TTATTTATTATTTA
1 TTATTTATTACTTA
*
24816317 TTATTTATTATTTA
1 TTATTTATTACTTA
24816331 TTATTTATCT-CTTA
1 TTATTTAT-TACTTA
24816345 TTAATTTA
1 TT-ATTTA
24816353 ATTAATTAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
14 27 0.82
15 6 0.18
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATTTATTACTTA
Found at i:24816345 original size:21 final size:21
Alignment explanation
Indices: 24816298--24816352 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
24816288 AAGAATTAAA
24816298 CTCTT-TTATTTATTATTTAT
1 CTCTTATTATTTATTATTTAT
*
24816318 -TATTTATTATTTATTATTTAT
1 CT-CTTATTATTTATTATTTAT
24816339 CTCTTATTAATTTA
1 CTCTTATT-ATTTA
24816353 ATTAATTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 1 0.03
20 2 0.07
21 20 0.69
22 6 0.21
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.67
Consensus pattern (21 bp):
CTCTTATTATTTATTATTTAT
Found at i:24817742 original size:30 final size:30
Alignment explanation
Indices: 24817706--24817788 Score: 139
Period size: 30 Copynumber: 2.8 Consensus size: 30
24817696 GGGAGTGTAA
* *
24817706 TGCTCACACAAGCTGAAATTATAACCGGAT
1 TGCTCACATAAGCTGACATTATAACCGGAT
*
24817736 TGCTCACATAAGTTGACATTATAACCGGAT
1 TGCTCACATAAGCTGACATTATAACCGGAT
24817766 TGCTCACATAAGCTGACATTATA
1 TGCTCACATAAGCTGACATTATA
24817789 TCGAGATTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.28
Consensus pattern (30 bp):
TGCTCACATAAGCTGACATTATAACCGGAT
Found at i:24819870 original size:12 final size:12
Alignment explanation
Indices: 24819853--24819886 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
24819843 TCGACATCAT
*
24819853 ATGGACGTGTGC
1 ATGGACGTGTCC
24819865 ATGGACGTGTCC
1 ATGGACGTGTCC
*
24819877 ATGGCCGTGT
1 ATGGACGTGT
24819887 ACGAGACACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.21, G:0.38, T:0.26
Consensus pattern (12 bp):
ATGGACGTGTCC
Found at i:24819945 original size:40 final size:40
Alignment explanation
Indices: 24819878--24819974 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
24819868 GACGTGTCCA
**
24819878 TGGCCGTGTACGAGACACGGTCATGTGACTATCGTAGATG
1 TGGCCGTGTACGAGACACGACCATGTGACTATCGTAGATG
* * * * *
24819918 TGGCCGTGTACGAGATACGACCGTGTGACTGTTGTAGGTG
1 TGGCCGTGTACGAGACACGACCATGTGACTATCGTAGATG
* **
24819958 TGGTCGTGCGCGAGACA
1 TGGCCGTGTACGAGACA
24819975 TAGCCATGTG
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.25
Consensus pattern (40 bp):
TGGCCGTGTACGAGACACGACCATGTGACTATCGTAGATG
Found at i:24820590 original size:23 final size:23
Alignment explanation
Indices: 24820556--24821227 Score: 525
Period size: 23 Copynumber: 28.6 Consensus size: 23
24820546 AATCTACCCT
*
24820556 AAATTGGACAGCATATATACAAC
1 AAATTGGGCAGCATATATACAAC
* *
24820579 AAATTGGGCAGCATATATATACC
1 AAATTGGGCAGCATATATACAAC
* * * *
24820602 AAATTGAGCAGCATTTTTACATC
1 AAATTGGGCAGCATATATACAAC
**
24820625 AAAATTGGATAGCATATATACAAC
1 -AAATTGGGCAGCATATATACAAC
*
24820649 AATTTGGGCAGCATATATACAAC
1 AAATTGGGCAGCATATATACAAC
* * * * *
24820672 AAATTGAGCAGTATTTTTACACCAA
1 AAATTGGGCAGCATATATACA--AC
* *
24820697 AAATTGGACAGCATATATACAGC
1 AAATTGGGCAGCATATATACAAC
* * * * *
24820720 AAATTAGGTAGTATATATATACC
1 AAATTGGGCAGCATATATACAAC
* * * *
24820743 AAATTGAGCAGCATTTTTACATC
1 AAATTGGGCAGCATATATACAAC
* *
24820766 AAAACTGGACAGCATATATACAAC
1 -AAATTGGGCAGCATATATACAAC
* *
24820790 AATTTGGGCAGCATAAATACAAC
1 AAATTGGGCAGCATATATACAAC
* * * *
24820813 AAATTGAGCAGCATTTTTACACCAA
1 AAATTGGGCAGCATATATACA--AC
* *
24820838 AAATTAGACAGCATATATACAAC
1 AAATTGGGCAGCATATATACAAC
* *
24820861 AAATTGGGCAGCATATATATACC
1 AAATTGGGCAGCATATATACAAC
* * * *
24820884 AAATTGAGCAGCATTTTTACATC
1 AAATTGGGCAGCATATATACAAC
* *
24820907 AAAACTGGACAGCATATATACAAC
1 -AAATTGGGCAGCATATATACAAC
* *
24820931 AATTTGGGCAGCATAAATACAAC
1 AAATTGGGCAGCATATATACAAC
* * * *
24820954 AAATTGAGCAGCATTTTTACACCAA
1 AAATTGGGCAGCATATATACA--AC
* *
24820979 AAATTAGACAGCATATATACAAC
1 AAATTGGGCAGCATATATACAAC
* *
24821002 AAATTGGGCAGCATATATATACC
1 AAATTGGGCAGCATATATACAAC
* * * *
24821025 AAATTGAGCAGCATTTTTACATC
1 AAATTGGGCAGCATATATACAAC
**
24821048 AAAATTGGATAGCATATATACAAC
1 -AAATTGGGCAGCATATATACAAC
* * *
24821072 AATTTGGGCAGCATAAATACAAT
1 AAATTGGGCAGCATATATACAAC
* * * *
24821095 AAATTGAGCAGCATTTTTACACCAA
1 AAATTGGGCAGCATATATACA--AC
24821120 AAATTGGGCAGCATATATACAAC
1 AAATTGGGCAGCATATATACAAC
* *
24821143 AAATTGGGCAGCATATATATACC
1 AAATTGGGCAGCATATATACAAC
* * * * *
24821166 AAATTGAGCAACATTTTTACACC
1 AAATTGGGCAGCATATATACAAC
* *
24821189 AAAATTTGGACAGCATATATATAAC
1 -AAA-TTGGGCAGCATATATACAAC
*
24821214 AATTTGGGCAGCAT
1 AAATTGGGCAGCAT
24821228 TTAAGCATTA
Statistics
Matches: 492, Mismatches: 143, Indels: 28
0.74 0.22 0.04
Matches are distributed among these distances:
23 336 0.68
24 73 0.15
25 83 0.17
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (23 bp):
AAATTGGGCAGCATATATACAAC
Found at i:24820724 original size:141 final size:141
Alignment explanation
Indices: 24820556--24821227 Score: 1182
Period size: 141 Copynumber: 4.8 Consensus size: 141
24820546 AATCTACCCT
24820556 AAATTGGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
1 AAATTGGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
* * *
24820621 CATCAAAATTGGATAGCATATATACAACAATTTGGGCAGCATATATACAACAAATTGAGCAGTAT
66 CATCAAAATTGGACAGCATATATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCAT
24820686 TTTTACACCAA
131 TTTTACACCAA
* * * *
24820697 AAATTGGACAGCATATATACAGCAAATTAGGTAGTATATATATACCAAATTGAGCAGCATTTTTA
1 AAATTGGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
*
24820762 CATCAAAACTGGACAGCATATATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCAT
66 CATCAAAATTGGACAGCATATATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCAT
24820827 TTTTACACCAA
131 TTTTACACCAA
*
24820838 AAATTAGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
1 AAATTGGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
*
24820903 CATCAAAACTGGACAGCATATATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCAT
66 CATCAAAATTGGACAGCATATATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCAT
24820968 TTTTACACCAA
131 TTTTACACCAA
*
24820979 AAATTAGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
1 AAATTGGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
* *
24821044 CATCAAAATTGGATAGCATATATACAACAATTTGGGCAGCATAAATACAATAAATTGAGCAGCAT
66 CATCAAAATTGGACAGCATATATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCAT
24821109 TTTTACACCAA
131 TTTTACACCAA
* *
24821120 AAATTGGGCAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAACATTTTTA
1 AAATTGGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
* *
24821185 CACCAAAATTTGGACAGCATATATATAACAATTTGGGCAGCAT
66 CATCAAAA-TTGGACAGCATATATACAACAATTTGGGCAGCAT
24821228 TTAAGCATTA
Statistics
Matches: 508, Mismatches: 22, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
141 476 0.94
142 32 0.06
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (141 bp):
AAATTGGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTA
CATCAAAATTGGACAGCATATATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCAT
TTTTACACCAA
Found at i:24821983 original size:28 final size:28
Alignment explanation
Indices: 24821951--24822050 Score: 164
Period size: 28 Copynumber: 3.6 Consensus size: 28
24821941 TTTAATAAGT
24821951 TCGCACACTTAGTGCTTAATAATCAAAC
1 TCGCACACTTAGTGCTTAATAATCAAAC
*
24821979 TCGCACACTTAGTGCTTAATAATCAATC
1 TCGCACACTTAGTGCTTAATAATCAAAC
* * *
24822007 TCGCACACTTAGTGCTTTACAATTAAAC
1 TCGCACACTTAGTGCTTAATAATCAAAC
24822035 TCGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
24822051 AATCTCATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (28 bp):
TCGCACACTTAGTGCTTAATAATCAAAC
Found at i:24827006 original size:13 final size:13
Alignment explanation
Indices: 24826967--24827019 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
24826957 CGTTCTTCAT
24826967 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
24826980 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
*
24826993 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
24827006 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
24827019 T
1 T
24827020 TTGGTTCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 2 0.06
13 30 0.88
14 2 0.06
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:24827981 original size:21 final size:21
Alignment explanation
Indices: 24827957--24827996 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24827947 GTAAATTTAG
*
24827957 CTCAATTTAATACAATTCATA
1 CTCAATTCAATACAATTCATA
*
24827978 CTCAATTCAATCCAATTCA
1 CTCAATTCAATACAATTCA
24827997 CATCTTAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (21 bp):
CTCAATTCAATACAATTCATA
Found at i:24830694 original size:25 final size:26
Alignment explanation
Indices: 24830666--24830727 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
24830656 ATTATATATT
24830666 AAATATATATT-TTTTATTTTTAATC
1 AAATATATATTGTTTTATTTTTAATC
24830691 AAATATATATTGTTTTATTTTTAATC
1 AAATATATATTGTTTTATTTTTAATC
24830717 AAATATTATAT
1 AAATA-TATAT
24830728 ATATATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 11 0.31
26 19 0.54
27 5 0.14
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (26 bp):
AAATATATATTGTTTTATTTTTAATC
Found at i:24833011 original size:23 final size:24
Alignment explanation
Indices: 24832985--24833045 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 24
24832975 GCTTAGAATT
* *
24832985 AAAACTTAATATATATTCATA-TC
1 AAAACTTAATATATATTCAAAGTA
*
24833008 AAAACTTAAT-T-TATTGAAAGTA
1 AAAACTTAATATATATTCAAAGTA
24833030 AAAACTTAATATATAT
1 AAAACTTAATATATAT
24833046 ATATATATNN
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 6 0.19
22 12 0.38
23 11 0.34
24 3 0.09
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (24 bp):
AAAACTTAATATATATTCAAAGTA
Found at i:24838295 original size:24 final size:24
Alignment explanation
Indices: 24838268--24838313 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
24838258 TTAAATAAAA
24838268 TAATTTAAAAAATAATTTTTAATG
1 TAATTTAAAAAATAATTTTTAATG
*
24838292 TAATTTAAAAACTAATTTTTAA
1 TAATTTAAAAAATAATTTTTAA
24838314 AAAATTCTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
TAATTTAAAAAATAATTTTTAATG
Found at i:24844371 original size:6 final size:6
Alignment explanation
Indices: 24844362--24844441 Score: 67
Period size: 6 Copynumber: 13.7 Consensus size: 6
24844352 CAAAGAGAAA
* * * **
24844362 AAAATC AAAATC AAAATC AAAATA AAAAAC AAAA-G AAAAAG AGAAA--
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC A-AAATC
* *
24844408 AAAATC AAAATC AAAATC AAAATA AAAAAC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
24844442 AGAAAAAGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
4 3 0.05
5 5 0.08
6 52 0.83
7 3 0.05
ACGTcount: A:0.76, C:0.10, G:0.04, T:0.10
Consensus pattern (6 bp):
AAAATC
Found at i:24844379 original size:12 final size:12
Alignment explanation
Indices: 24844361--24844441 Score: 85
Period size: 12 Copynumber: 6.9 Consensus size: 12
24844351 ACAAAGAGAA
24844361 AAAAATCAAAAT
1 AAAAATCAAAAT
*
24844373 CAAAATCAAAAT
1 AAAAATCAAAAT
* *
24844385 AAAAAACAAAAG
1 AAAAATCAAAAT
* *
24844397 AAAAA-GAGAA-
1 AAAAATCAAAAT
24844407 AAAAATCAAAAT
1 AAAAATCAAAAT
*
24844419 CAAAATCAAAAT
1 AAAAATCAAAAT
*
24844431 AAAAAACAAAA
1 AAAAATCAAAA
24844442 AGAAAAAGAG
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
10 5 0.09
11 6 0.11
12 45 0.80
ACGTcount: A:0.77, C:0.10, G:0.04, T:0.10
Consensus pattern (12 bp):
AAAAATCAAAAT
Found at i:24844436 original size:47 final size:47
Alignment explanation
Indices: 24844346--24844478 Score: 214
Period size: 46 Copynumber: 2.9 Consensus size: 47
24844336 GAAAAAAAGG
*
24844346 AAAAGACAAAGAGAAAAAAATCAAAATCAAAATCAAAATAAAAAAC-
1 AAAAGAAAAAGAGAAAAAAATCAAAATCAAAATCAAAATAAAAAACA
24844392 AAAAGAAAAAGAGAAAAAAATCAAAATCAAAATCAAAATAAAAAACA
1 AAAAGAAAAAGAGAAAAAAATCAAAATCAAAATCAAAATAAAAAACA
** * *
24844439 AAAAGAAAAAGAGAAATCAATCAAAGTCAAAATAAAAATA
1 AAAAGAAAAAGAGAAAAAAATCAAAATCAAAATCAAAATA
24844479 TGAAAAGCAA
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 45 0.56
47 36 0.44
ACGTcount: A:0.74, C:0.09, G:0.08, T:0.10
Consensus pattern (47 bp):
AAAAGAAAAAGAGAAAAAAATCAAAATCAAAATCAAAATAAAAAACA
Found at i:24846402 original size:86 final size:86
Alignment explanation
Indices: 24846088--24846660 Score: 912
Period size: 86 Copynumber: 6.6 Consensus size: 86
24846078 AGACCAGTGA
* * * *
24846088 AGATCGAAAACGAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTTGCC
24846153 TTCCTGCGTTAACAGCGAAGC
66 TTCCTGCGTTAACAGCGAAGC
* *
24846174 AGATAAAAAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAAAAGCAGATTTT
1 AGAT---CAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTT
* *
24846239 GCCTTCCTGCGTGAACAGTGAAGC
63 GCCTTCCTGCGTTAACAGCGAAGC
* * *
24846263 AGATCAAAAAAATAAAGCCTTGCCTCCATCGGTTGCAGTGGTGCTGGTTAAAGAAGCAGATCTTG
1 AGATC--AAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTTG
24846328 CCTTCCTGCGTTAACAGCGAAGC
64 CCTTCCTGCGTTAACAGCGAAGC
*
24846351 AGATCAAAAACAAAGCCCTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTTGCC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTTGCC
24846416 TTCCTGCGTTAACAGCGAAGC
66 TTCCTGCGTTAACAGCGAAGC
* * * *
24846437 AGATCAAAAACAAGGCCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTAAAGAAGTAGATTTTGTC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTTGCC
*
24846502 TTCCTGCGTTAACAGCGAAGT
66 TTCCTGCGTTAACAGCGAAGC
24846523 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTTGCC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTTGCC
*
24846588 TTCCTGCGTGAACAGCGAAGC
66 TTCCTGCGTTAACAGCGAAGC
**
24846609 AGAAAAAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAG
1 AG-ATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAG
24846661 GAGTAGATCA
Statistics
Matches: 448, Mismatches: 33, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
86 243 0.54
87 47 0.10
88 80 0.18
89 78 0.17
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (86 bp):
AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATTTTGCC
TTCCTGCGTTAACAGCGAAGC
Found at i:24846816 original size:44 final size:44
Alignment explanation
Indices: 24846684--24846818 Score: 198
Period size: 44 Copynumber: 3.1 Consensus size: 44
24846674 CCACCAGTCC
*
24846684 TATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGATCT
* * *
24846728 TATCTCCCTAAGCTGTAGTGGAGTAGGTCAAAGATTGCAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGATCT
* * * *
24846772 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGATCT
24846816 TAT
1 TAT
24846819 TTTCCCAAGA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 80 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGATCT
Found at i:24853285 original size:21 final size:23
Alignment explanation
Indices: 24853237--24853285 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
24853227 AGCAATTTTT
*
24853237 TATAATATGTAAATTTAGTAAAA
1 TATAATATGAAAATTTAGTAAAA
* *
24853260 AATAATAT-AAAATTTA-TAAGA
1 TATAATATGAAAATTTAGTAAAA
24853281 TATAA
1 TATAA
24853286 CCTTTATAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 8 0.36
22 7 0.32
23 7 0.32
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (23 bp):
TATAATATGAAAATTTAGTAAAA
Found at i:24854198 original size:71 final size:71
Alignment explanation
Indices: 24854089--24854221 Score: 223
Period size: 71 Copynumber: 1.9 Consensus size: 71
24854079 TAGAAAAGAG
* *
24854089 ATCATGCCCAGTAAGTTAGGACACAATCTTTTCTTAATTCCCGAGATCGTTTAAAACTTGAGAAA
1 ATCATGCCCAATAAGTTAGGACACAATCTCTTCTTAATTCCCGAGATCGTTTAAAACTTGAGAAA
24854154 AAAGGA
66 AAAGGA
*
24854160 ATCATGCCCAATAAGTTAGGACACGATCTCCTT-TTAATTCCCGAGATCGTTTAAAACTTGAG
1 ATCATGCCCAATAAGTTAGGACACAATCT-CTTCTTAATTCCCGAGATCGTTTAAAACTTGAG
24854222 TTTGAAAGGA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
71 56 0.97
72 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (71 bp):
ATCATGCCCAATAAGTTAGGACACAATCTCTTCTTAATTCCCGAGATCGTTTAAAACTTGAGAAA
AAAGGA
Found at i:24862806 original size:24 final size:24
Alignment explanation
Indices: 24862779--24862824 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
24862769 GTTATAACTT
*
24862779 TTTTTATTTATCAAAATATATATA
1 TTTTTATTTACCAAAATATATATA
24862803 TTTTTATTTACCAAAATATATA
1 TTTTTATTTACCAAAATATATA
24862825 AAAAAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTTTATTTACCAAAATATATATA
Found at i:24862807 original size:26 final size:26
Alignment explanation
Indices: 24862759--24862824 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 26
24862749 AAATAAAAAA
*
24862759 TTATCAAAATGT-TATAACTTTTTTTAT
1 TTATCAAAATATATATAAC--TTTTTAT
24862786 TTATCAAAATATATAT-A-TTTTTAT
1 TTATCAAAATATATATAACTTTTTAT
*
24862810 TTACCAAAATATATA
1 TTATCAAAATATATA
24862825 AAAAAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 21 0.58
27 12 0.33
28 3 0.08
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.50
Consensus pattern (26 bp):
TTATCAAAATATATATAACTTTTTAT
Found at i:24864988 original size:17 final size:17
Alignment explanation
Indices: 24864966--24864998 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
24864956 ATGGGGTAAG
24864966 ATGCTATTCTAATATTA
1 ATGCTATTCTAATATTA
24864983 ATGCTATTCTAATATT
1 ATGCTATTCTAATATT
24864999 CATGACATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (17 bp):
ATGCTATTCTAATATTA
Found at i:24866545 original size:11 final size:11
Alignment explanation
Indices: 24866507--24866536 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
24866497 AATAGTTCAG
24866507 GTTTTTTTTCT
1 GTTTTTTTTCT
24866518 GTTTTTTTTCT
1 GTTTTTTTTCT
24866529 GTTTTTTT
1 GTTTTTTT
24866537 GTTTTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.83
Consensus pattern (11 bp):
GTTTTTTTTCT
Found at i:24866603 original size:27 final size:27
Alignment explanation
Indices: 24866547--24866615 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 27
24866537 GTTTTTTTTG
*
24866547 ATATATTTTGGTAAATAAAAAAATTAT
1 ATATATTTTGGTAAATAAAAAAAGTAT
*
24866574 ATATTTTTTGGTAAATAAAAAAAAGT-T
1 ATATATTTTGGTAAAT-AAAAAAAGTAT
*
24866601 ATAACATTTTGGTAA
1 AT-ATATTTTGGTAA
24866616 TTTTTTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 18 0.50
28 18 0.50
ACGTcount: A:0.48, C:0.01, G:0.10, T:0.41
Consensus pattern (27 bp):
ATATATTTTGGTAAATAAAAAAAGTAT
Found at i:24866610 original size:28 final size:27
Alignment explanation
Indices: 24866551--24866615 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 27
24866541 TTTTTGATAT
*
24866551 ATTTTGGTAAATAAAAAAATTATATAT
1 ATTTTGGTAAATAAAAAAATTATATAC
*
24866578 TTTTTGGTAAATAAAAAAAAGTTATA-AC
1 ATTTTGGTAAAT-AAAAAAA-TTATATAC
24866606 ATTTTGGTAA
1 ATTTTGGTAA
24866616 TTTTTTATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 11 0.33
28 17 0.52
29 5 0.15
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.40
Consensus pattern (27 bp):
ATTTTGGTAAATAAAAAAATTATATAC
Found at i:24866960 original size:212 final size:213
Alignment explanation
Indices: 24866593--24867017 Score: 843
Period size: 212 Copynumber: 2.0 Consensus size: 213
24866583 GGTAAATAAA
24866593 AAAAAGTTATAACATTTTGGTAATTTTTTATTTTTTTTATATTATTTCTATAAAAAACCCGAGAA
1 AAAAAGTTATAACATTTTGGTAATTTTTTATTTTTTTTATATTATTTCTATAAAAAACCCGAGAA
24866658 ATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTCTTTTATTTAGGTTTT
66 ATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTCTTTTATTTAGGTTTT
24866723 TTAATATTTTTAAAATTTTAAATTAGTAAAAAATAAAATTGTACTTTTAACCCCTTAAAAATGAT
131 TTAATATTTTTAAAATTTTAAATTAGTAAAAAATAAAATTGTACTTTTAACCCCTTAAAAATGAT
24866788 AAA-TTTTGATATAATTT
196 AAATTTTTGATATAATTT
24866805 AAAAAGTTATAACATTTTGGTAATTTTTTATTTTTTTTATATTATTTCTATAAAAAACCCGAGAA
1 AAAAAGTTATAACATTTTGGTAATTTTTTATTTTTTTTATATTATTTCTATAAAAAACCCGAGAA
24866870 ATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTCTTTTATTTAGGTTTT
66 ATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTCTTTTATTTAGGTTTT
24866935 TTAATATTTTTAAAATTTTAAATTAGTAAAAAATAAAATTGTACTTTTAACCCCTTAAAAATGAT
131 TTAATATTTTTAAAATTTTAAATTAGTAAAAAATAAAATTGTACTTTTAACCCCTTAAAAATGAT
24867000 AAATTTTTGATATAATTT
196 AAATTTTTGATATAATTT
24867018 TTTTTAAATT
Statistics
Matches: 212, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
212 198 0.93
213 14 0.07
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (213 bp):
AAAAAGTTATAACATTTTGGTAATTTTTTATTTTTTTTATATTATTTCTATAAAAAACCCGAGAA
ATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTCTTTTATTTAGGTTTT
TTAATATTTTTAAAATTTTAAATTAGTAAAAAATAAAATTGTACTTTTAACCCCTTAAAAATGAT
AAATTTTTGATATAATTT
Found at i:24866966 original size:106 final size:106
Alignment explanation
Indices: 24866643--24866967 Score: 249
Period size: 106 Copynumber: 3.1 Consensus size: 106
24866633 ATTATTTCTA
24866643 TAAAAAACCCGAGAAATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTC
1 TAAAAAACCCGAGAAATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTC
24866708 TTTTATTTAGGTTTTTTAATATTTTTAAAATTTTAAATTAG
66 TTTTATTTAGGTTTTTTAATATTTTTAAAATTTTAAATTAG
* * *** *** ** * * * ** *
24866749 TAAAAAA---TA-AAATTGTACTTTTAACCCCTTAAAAAT-GAT--AAATTTTGATATAATTTAA
1 TAAAAAACCCGAGAAA-TGCAC--TT-AGGGCTT-GGTATGGATCCCGATTCT-CTTTAAAATAG
* *** * * * * *
24866807 AAAGTTATAACATTTTGGTAATTTTTTATTTTTTTTATATTATT---TCTA-
60 AAA-TTCTTTTATTTAGGT--TTTTTAATATTTTTAAAATT-TTAAAT-TAG
24866855 TAAAAAACCCGAGAAATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTC
1 TAAAAAACCCGAGAAATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTC
24866920 TTTTATTTAGGTTTTTTAATATTTTTAAAATTTTAAATTAG
66 TTTTATTTAGGTTTTTTAATATTTTTAAAATTTTAAATTAG
24866961 TAAAAAA
1 TAAAAAA
24866968 TAAAATTGTA
Statistics
Matches: 147, Mismatches: 50, Indels: 44
0.61 0.21 0.18
Matches are distributed among these distances:
102 3 0.02
103 7 0.05
104 20 0.14
105 15 0.10
106 57 0.39
107 15 0.10
108 20 0.14
109 7 0.05
110 3 0.02
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.42
Consensus pattern (106 bp):
TAAAAAACCCGAGAAATGCACTTAGGGCTTGGTATGGATCCCGATTCTCTTTAAAATAGAAATTC
TTTTATTTAGGTTTTTTAATATTTTTAAAATTTTAAATTAG
Found at i:24868752 original size:27 final size:26
Alignment explanation
Indices: 24868714--24868997 Score: 327
Period size: 27 Copynumber: 10.6 Consensus size: 26
24868704 NNNNNNNNNN
24868714 GTATTTCGGTCATTTTATCCTATGGGG
1 GTATTTCGGTCATTTTA-CCTATGGGG
* *
24868741 GTATTTCGGTCATTCTACCAAATGGGG
1 GTATTTCGGTCATTTTACC-TATGGGG
**
24868768 GTATTTCGGTCATTTTACCTTATAAGG
1 GTATTTCGGTCATTTTACC-TATGGGG
*
24868795 GTA-TTCGGTCATTTTACCCTATAGGG
1 GTATTTCGGTCATTTTA-CCTATGGGG
* *
24868821 GTATTTTGGTCATTTTACCCTATGAGG
1 GTATTTCGGTCATTTTA-CCTATGGGG
* * *
24868848 GTATTTCAGTCATTCTACCTTATGGAG
1 GTATTTCGGTCATTTTACC-TATGGGG
*
24868875 GTATTTCGGTCATTCTACCATATGGGG
1 GTATTTCGGTCATTTTACC-TATGGGG
* *
24868902 GTATTTCAGTTATTTTACCCTATGGGG
1 GTATTTCGGTCATTTTA-CCTATGGGG
*
24868929 GTATTTCGGTCATTTTACCCTATAGGG
1 GTATTTCGGTCATTTTA-CCTATGGGG
* *
24868956 GTATTTCGGTCATTTTACTTTATAGGG
1 GTATTTCGGTCATTTTAC-CTATGGGG
24868983 GTATTTCGGTCATTT
1 GTATTTCGGTCATTT
24868998 ATTGACCTGT
Statistics
Matches: 225, Mismatches: 26, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
26 27 0.12
27 196 0.87
28 2 0.01
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (26 bp):
GTATTTCGGTCATTTTACCTATGGGG
Found at i:24868797 original size:54 final size:54
Alignment explanation
Indices: 24868714--24868997 Score: 363
Period size: 54 Copynumber: 5.3 Consensus size: 54
24868704 NNNNNNNNNN
* * **
24868714 GTATTTCGGTCATTTTATCCTATGGGGGTATTTCGGTCATTCTACCAAATGGGG
1 GTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGG
* ** *
24868768 GTATTTCGGTCATTTTACCTTATAAGGGTA-TTCGGTCATTTTACCCTATAGGG
1 GTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGG
* * * * * *
24868821 GTATTTTGGTCATTTTACCCTATGAGGGTATTTCAGTCATTCTACCTTATGGAG
1 GTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGG
* * * *
24868875 GTATTTCGGTCATTCTACCATATGGGGGTATTTCAGTTATTTTACCCTATGGGG
1 GTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGG
* ** *
24868929 GTATTTCGGTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACTTTATAGGG
1 GTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGG
24868983 GTATTTCGGTCATTT
1 GTATTTCGGTCATTT
24868998 ATTGACCTGT
Statistics
Matches: 197, Mismatches: 32, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 46 0.23
54 151 0.77
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (54 bp):
GTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGG
Found at i:24870512 original size:521 final size:521
Alignment explanation
Indices: 24869531--24870572 Score: 2084
Period size: 521 Copynumber: 2.0 Consensus size: 521
24869521 CTCTTATTGA
24869531 CACTAAATCCAAAAACACCATCCTTACCTTGCTTGAATGAGGGCGACTTTAATCCTCCAAGACTG
1 CACTAAATCCAAAAACACCATCCTTACCTTGCTTGAATGAGGGCGACTTTAATCCTCCAAGACTG
24869596 CTAACCAAAAGTGATCACAGGCTTTATCGATTAACTGCACCACAAACACCGATCTCATTAACTAA
66 CTAACCAAAAGTGATCACAGGCTTTATCGATTAACTGCACCACAAACACCGATCTCATTAACTAA
24869661 GTTAGGTCATATAAGTGGCCTCAATCCACGAACGATATCCTACAGGAACATAATCAATAGACGAC
131 GTTAGGTCATATAAGTGGCCTCAATCCACGAACGATATCCTACAGGAACATAATCAATAGACGAC
24869726 CTAAACCCCAAAAGTGAGGTAACGTATTACCTTGATTGAACGCTGAGAGCAAAGGTTGCGACTAC
196 CTAAACCCCAAAAGTGAGGTAACGTATTACCTTGATTGAACGCTGAGAGCAAAGGTTGCGACTAC
24869791 TTCAAAATCACTTACAATCCCCCACTCCTTGAAGGAAAACCTAGAACCACAACAAACAACACCTC
261 TTCAAAATCACTTACAATCCCCCACTCCTTGAAGGAAAACCTAGAACCACAACAAACAACACCTC
24869856 GTGAGGAAAGAATCAACAGTCGGTAATCAAGGGATAAAAAGGAGGGTATTCAGTTTTAAGAAAAA
326 GTGAGGAAAGAATCAACAGTCGGTAATCAAGGGATAAAAAGGAGGGTATTCAGTTTTAAGAAAAA
24869921 GAGTAGAAGAGAACAGGTCTAAAGAAAAGTGAGGAGTGTAAACACTTACCGATAAAAACACTTGC
391 GAGTAGAAGAGAACAGGTCTAAAGAAAAGTGAGGAGTGTAAACACTTACCGATAAAAACACTTGC
24869986 AGCACTAGAACAGCAGGAAGCGGCGGAGAGAAGATCGGCACCGAGAATGATACAACACGAAGGGT
456 AGCACTAGAACAGCAGGAAGCGGCGGAGAGAAGATCGGCACCGAGAATGATACAACACGAAGGGT
24870051 G
521 G
24870052 CACTAAATCCAAAAACACCATCCTTACCTTGCTTGAATGAGGGCGACTTTAATCCTCCAAGACTG
1 CACTAAATCCAAAAACACCATCCTTACCTTGCTTGAATGAGGGCGACTTTAATCCTCCAAGACTG
24870117 CTAACCAAAAGTGATCACAGGCTTTATCGATTAACTGCACCACAAACACCGATCTCATTAACTAA
66 CTAACCAAAAGTGATCACAGGCTTTATCGATTAACTGCACCACAAACACCGATCTCATTAACTAA
24870182 GTTAGGTCATATAAGTGGCCTCAATCCACGAACGATATCCTACAGGAACATAATCAATAGACGAC
131 GTTAGGTCATATAAGTGGCCTCAATCCACGAACGATATCCTACAGGAACATAATCAATAGACGAC
24870247 CTAAACCCCAAAAGTGAGGTAACGTATTACCTTGATTGAACGCTGAGAGCAAAGGTTGCGACTAC
196 CTAAACCCCAAAAGTGAGGTAACGTATTACCTTGATTGAACGCTGAGAGCAAAGGTTGCGACTAC
24870312 TTCAAAATCACTTACAATCCCCCACTCCTTGAAGGAAAACCTAGAACCACAACAAACAACACCTC
261 TTCAAAATCACTTACAATCCCCCACTCCTTGAAGGAAAACCTAGAACCACAACAAACAACACCTC
24870377 GTGAGGAAAGAATCAACAGTCGGTAATCAAGGGATAAAAAGGAGGGTATTCAGTTTTAAGAAAAA
326 GTGAGGAAAGAATCAACAGTCGGTAATCAAGGGATAAAAAGGAGGGTATTCAGTTTTAAGAAAAA
24870442 GAGTAGAAGAGAACAGGTCTAAAGAAAAGTGAGGAGTGTAAACACTTACCGATAAAAACACTTGC
391 GAGTAGAAGAGAACAGGTCTAAAGAAAAGTGAGGAGTGTAAACACTTACCGATAAAAACACTTGC
24870507 AGCACTAGAACAGCAGGAAGCGGCGGAGAGAAGATCGGCACCGAGAATGATACAACACGAAGGGT
456 AGCACTAGAACAGCAGGAAGCGGCGGAGAGAAGATCGGCACCGAGAATGATACAACACGAAGGGT
24870572 G
521 G
24870573 ATATTCAACT
Statistics
Matches: 521, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
521 521 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (521 bp):
CACTAAATCCAAAAACACCATCCTTACCTTGCTTGAATGAGGGCGACTTTAATCCTCCAAGACTG
CTAACCAAAAGTGATCACAGGCTTTATCGATTAACTGCACCACAAACACCGATCTCATTAACTAA
GTTAGGTCATATAAGTGGCCTCAATCCACGAACGATATCCTACAGGAACATAATCAATAGACGAC
CTAAACCCCAAAAGTGAGGTAACGTATTACCTTGATTGAACGCTGAGAGCAAAGGTTGCGACTAC
TTCAAAATCACTTACAATCCCCCACTCCTTGAAGGAAAACCTAGAACCACAACAAACAACACCTC
GTGAGGAAAGAATCAACAGTCGGTAATCAAGGGATAAAAAGGAGGGTATTCAGTTTTAAGAAAAA
GAGTAGAAGAGAACAGGTCTAAAGAAAAGTGAGGAGTGTAAACACTTACCGATAAAAACACTTGC
AGCACTAGAACAGCAGGAAGCGGCGGAGAGAAGATCGGCACCGAGAATGATACAACACGAAGGGT
G
Found at i:24873092 original size:32 final size:33
Alignment explanation
Indices: 24873051--24873123 Score: 112
Period size: 32 Copynumber: 2.2 Consensus size: 33
24873041 ATTTTTACAA
*
24873051 TGTCGAAGAAAGAGAAAGAAGTGTTCT-CATGG
1 TGTCGAAGAAAGAGAAAGAAATGTTCTGCATGG
*
24873083 TGTCGAAGAAAGAGAAAGAAATGTTTTGCATGG
1 TGTCGAAGAAAGAGAAAGAAATGTTCTGCATGG
*
24873116 TGTTGAAG
1 TGTCGAAG
24873124 GATATAAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
32 25 0.68
33 12 0.32
ACGTcount: A:0.37, C:0.07, G:0.32, T:0.25
Consensus pattern (33 bp):
TGTCGAAGAAAGAGAAAGAAATGTTCTGCATGG
Found at i:24876636 original size:15 final size:14
Alignment explanation
Indices: 24876612--24876642 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
24876602 TATTGTAAGA
24876612 ATATTTTTAACATT
1 ATATTTTTAACATT
24876626 ATATCTTTTAACATT
1 ATAT-TTTTAACATT
24876641 AT
1 AT
24876643 TGTAAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATTTTTAACATT
Found at i:24882969 original size:30 final size:31
Alignment explanation
Indices: 24882902--24882969 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 31
24882892 CATGTCCTTA
* *
24882902 TATTTTTTATATATTCGAAATTTATTCTCTT
1 TATTTTTTATATATTAGAAATTTATTCTCTC
*
24882933 TATTTTTTAT-TTTTAGAAATTTATTC-CTC
1 TATTTTTTATATATTAGAAATTTATTCTCTC
*
24882962 TACTTTTT
1 TATTTTTT
24882970 GGATTTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 9 0.27
30 14 0.42
31 10 0.30
ACGTcount: A:0.24, C:0.10, G:0.03, T:0.63
Consensus pattern (31 bp):
TATTTTTTATATATTAGAAATTTATTCTCTC
Found at i:24883333 original size:9 final size:11
Alignment explanation
Indices: 24883304--24883328 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24883294 ATCACAATAC
24883304 ATATCTATAAT
1 ATATCTATAAT
24883315 ATATCTATAAT
1 ATATCTATAAT
24883326 ATA
1 ATA
24883329 CATAAAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (11 bp):
ATATCTATAAT
Found at i:24888766 original size:3 final size:3
Alignment explanation
Indices: 24888760--24888830 Score: 70
Period size: 3 Copynumber: 23.7 Consensus size: 3
24888750 AAACTAATAA
* * * * * *
24888760 ATT ATT ATT ATT ATT ATT ATT ATT AGT AGT AGT AGT AGT ATT ATT AAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
24888808 ATT ATT AAT ATT ATT GTT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT AT
24888831 CATCATATTT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:24890541 original size:54 final size:54
Alignment explanation
Indices: 24890477--24890586 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
24890467 TCTGATACCA
* * ** * *
24890477 TGTTGAGATAGTAGTAGGTAACGAAATAATCGATTGAAAGAAAAAACAATTGAT
1 TGTTGAGATAGCAATAGACAACGAAACAATCGATTGAAAAAAAAAACAATTGAT
*
24890531 TGTTGAGATAGCAATTGACAACGAAACAATCGATTGAAAAAAAAAACAATTGAT
1 TGTTGAGATAGCAATAGACAACGAAACAATCGATTGAAAAAAAAAACAATTGAT
24890585 TG
1 TG
24890587 AGAGCAAATA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.47, C:0.08, G:0.20, T:0.25
Consensus pattern (54 bp):
TGTTGAGATAGCAATAGACAACGAAACAATCGATTGAAAAAAAAAACAATTGAT
Found at i:24892656 original size:2 final size:2
Alignment explanation
Indices: 24892649--24892697 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
24892639 AGAATCAATA
* * *
24892649 AT AT AT AT AT AT AT AT AG AT AT AT AT AT AG AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24892691 AT AT AT A
1 AT AT AT A
24892698 AAAGACTCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (2 bp):
AT
Found at i:24892893 original size:113 final size:115
Alignment explanation
Indices: 24892741--24892964 Score: 407
Period size: 113 Copynumber: 2.0 Consensus size: 115
24892731 TAAGCGAGAA
* *
24892741 TCATAAAGTTTTTAAGGTGTGTGTATTATGAATGTGAACTATGGTATTCATAAGACTTCAACTGG
1 TCATAAAGTTTTTAAGGTATGTGTATTATGAATGTGAACTATGGTATTCATAAGACTTCAACTGA
*
24892806 CTAAAAATAGCAAAGGTAAATTGCATAAAAAGTGGATTTGACTTTGGTAT
66 CTAAAAATAACAAAGGTAAATTGCATAAAAAGTGGATTTGACTTTGGTAT
24892856 TCATAAAGTTTTTAA-G-ATGTGTATTATGAATGTGAACTATGGTATTCATAAGACTTCAACTGA
1 TCATAAAGTTTTTAAGGTATGTGTATTATGAATGTGAACTATGGTATTCATAAGACTTCAACTGA
24892919 CTAAAAATAACAAAGGTAAATTGCATAAAAAGTGGATTTGACTTTG
66 CTAAAAATAACAAAGGTAAATTGCATAAAAAGTGGATTTGACTTTG
24892965 CCAATAATAA
Statistics
Matches: 106, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
113 90 0.85
114 1 0.01
115 15 0.14
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (115 bp):
TCATAAAGTTTTTAAGGTATGTGTATTATGAATGTGAACTATGGTATTCATAAGACTTCAACTGA
CTAAAAATAACAAAGGTAAATTGCATAAAAAGTGGATTTGACTTTGGTAT
Found at i:24893575 original size:37 final size:37
Alignment explanation
Indices: 24893504--24893573 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
24893494 ATATATATAT
24893504 ATATATTACTTTTAATAATATCATGAATTCTTTTAAA
1 ATATATTACTTTTAATAATATCATGAATTCTTTTAAA
* *
24893541 ATATGTTACTTTTAATAATATCAT-AATTTTTTT
1 ATATATTACTTTTAATAATATCATGAATTCTTTT
24893574 TAGATTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 8 0.26
37 23 0.74
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (37 bp):
ATATATTACTTTTAATAATATCATGAATTCTTTTAAA
Done.