Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 80 of 136
Found at i:26267426 original size:26 final size:26
Alignment explanation
Indices: 26267370--26267441 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
26267360 AGCACACCTA
*
26267370 TATCGCAGCAAAGCTGCCAGTAGTAG
1 TATCGCAGCAAAGCTACCAGTAGTAG
* *
26267396 CATCGCAGCAGAGCTACCAGTA-TCAG
1 TATCGCAGCAAAGCTACCAGTAGT-AG
* * *
26267422 TATCGAAGTAAAGCTGCCAG
1 TATCGCAGCAAAGCTACCAG
26267442 AAACAGTATA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 1 0.03
26 36 0.97
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (26 bp):
TATCGCAGCAAAGCTACCAGTAGTAG
Found at i:26267646 original size:27 final size:27
Alignment explanation
Indices: 26267616--26267703 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
26267606 GTATAACAGC
*
26267616 CATTTTACCCTTTAGGGGTATTTCGGT
1 CATTTTACCCTTTAGGGGTATTTTGGT
* *
26267643 CATTTTA-CCTTTCGAGAGTATTTTGGT
1 CATTTTACCCTTTAG-GGGTATTTTGGT
* *
26267670 CATTTTACCATTTGGGGGTATTTTGGT
1 CATTTTACCCTTTAGGGGTATTTTGGT
26267697 CATTTTA
1 CATTTTA
26267704 TTGACCCCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.11
27 42 0.79
28 5 0.09
ACGTcount: A:0.17, C:0.15, G:0.20, T:0.48
Consensus pattern (27 bp):
CATTTTACCCTTTAGGGGTATTTTGGT
Found at i:26274920 original size:28 final size:28
Alignment explanation
Indices: 26274889--26275006 Score: 130
Period size: 28 Copynumber: 4.0 Consensus size: 28
26274879 TAAGATATGT
* *
26274889 AGTAACAGTCTGGGCCTGAGCCCTAA-AC
1 AGTAACAGTGTGGGCCTTAGCCC-AATAC
*
26274917 AGTAATAGCATAGTGTGGGCCTTAGCTCAATAC
1 AGT-A-A-CA--GTGTGGGCCTTAGCCCAATAC
*
26274950 TGTAACAGTGTGGGCCTTAGCCCAATAC
1 AGTAACAGTGTGGGCCTTAGCCCAATAC
*
26274978 TGTAACAGTGTGGGCCTTAGCCCAATAC
1 AGTAACAGTGTGGGCCTTAGCCCAATAC
26275006 A
1 A
26275007 ATATCAGTAC
Statistics
Matches: 78, Mismatches: 6, Indels: 12
0.81 0.06 0.12
Matches are distributed among these distances:
28 51 0.65
29 1 0.01
30 3 0.04
31 3 0.04
32 3 0.04
33 17 0.22
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (28 bp):
AGTAACAGTGTGGGCCTTAGCCCAATAC
Found at i:26275014 original size:28 final size:28
Alignment explanation
Indices: 26274928--26275005 Score: 147
Period size: 28 Copynumber: 2.8 Consensus size: 28
26274918 GTAATAGCAT
*
26274928 AGTGTGGGCCTTAGCTCAATACTGTAAC
1 AGTGTGGGCCTTAGCCCAATACTGTAAC
26274956 AGTGTGGGCCTTAGCCCAATACTGTAAC
1 AGTGTGGGCCTTAGCCCAATACTGTAAC
26274984 AGTGTGGGCCTTAGCCCAATAC
1 AGTGTGGGCCTTAGCCCAATAC
26275006 AATATCAGTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACTGTAAC
Found at i:26275379 original size:27 final size:28
Alignment explanation
Indices: 26275349--26275408 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
26275339 CCCTACTCCT
*
26275349 AGGGTTATAACATTCATTTTACCCTTC-
1 AGGGTTATAACAGTCATTTTACCCTTCG
* **
26275376 AGGGGTATTTCAGTCATTTTACCCTTCG
1 AGGGTTATAACAGTCATTTTACCCTTCG
26275404 AGGGT
1 AGGGT
26275409 ATTGTGGTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (28 bp):
AGGGTTATAACAGTCATTTTACCCTTCG
Found at i:26275409 original size:27 final size:25
Alignment explanation
Indices: 26275362--26275478 Score: 117
Period size: 27 Copynumber: 4.4 Consensus size: 25
26275352 GTTATAACAT
26275362 TCATTTTACCCTTCAGGGGTATTTCAG
1 TCATTTTACCCTTCA-GGGTATTT-AG
*
26275389 TCATTTTACCCTTCGAGGGTATTGTGG
1 TCATTTTACCCTTC-AGGGTATT-TAG
** *
26275416 TCATTTTACCCTTTGGGGGTATTTTG
1 TCATTTTACCC-TTCAGGGTATTTAG
26275442 ATCATTTTACCCTTTCAGGGTATTTCAG
1 -TCATTTTACCC-TTCAGGGTATTT-AG
*
26275470 TTATTTTAC
1 TCATTTTAC
26275479 TAACCCCACG
Statistics
Matches: 77, Mismatches: 8, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.03
27 70 0.91
28 5 0.06
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.45
Consensus pattern (25 bp):
TCATTTTACCCTTCAGGGTATTTAG
Found at i:26275420 original size:54 final size:54
Alignment explanation
Indices: 26275362--26275465 Score: 149
Period size: 54 Copynumber: 1.9 Consensus size: 54
26275352 GTTATAACAT
26275362 TCATTTTACCCTTCAGGGGTATTTCAG-TCATTTTACCC-TTCGAGGGTATTGTGG
1 TCATTTTACCCTTCAGGGGTATTT-AGATCATTTTACCCTTTC-AGGGTATTGTGG
** *
26275416 TCATTTTACCCTTTGGGGGTATTTTGATCATTTTACCCTTTCAGGGTATT
1 TCATTTTACCCTTCAGGGGTATTTAGATCATTTTACCCTTTCAGGGTATT
26275466 TCAGTTATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
53 1 0.02
54 41 0.91
55 3 0.07
ACGTcount: A:0.16, C:0.19, G:0.20, T:0.44
Consensus pattern (54 bp):
TCATTTTACCCTTCAGGGGTATTTAGATCATTTTACCCTTTCAGGGTATTGTGG
Found at i:26275476 original size:54 final size:54
Alignment explanation
Indices: 26275362--26275478 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
26275352 GTTATAACAT
*
26275362 TCATTTTACCCTTCAGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTGTGG
1 TCATTTTACCCTTCAGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTGTAG
** *
26275416 TCATTTTACCCTTTGGGGGTATTT-TGATCATTTTACCCTTTC-AGGGTATT-TCAG
1 TCATTTTACCCTTCAGGGGTATTTCAG-TCATTTTACCC-TTCGAGGGTATTGT-AG
*
26275470 TTATTTTAC
1 TCATTTTAC
26275479 TAACCCCACG
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
53 2 0.04
54 50 0.91
55 3 0.05
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.45
Consensus pattern (54 bp):
TCATTTTACCCTTCAGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTGTAG
Found at i:26275710 original size:19 final size:19
Alignment explanation
Indices: 26275686--26275738 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
26275676 TCGTGTGGGA
26275686 CACACGAGCCCATTAGGCC
1 CACACGAGCCCATTAGGCC
*
26275705 CACACG-GCCCATTTCGGCC
1 CACACGAGCCCA-TTAGGCC
26275724 CA-ACGTAGCCCATTA
1 CACACG-AGCCCATTA
26275739 CGACCTAAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 8 0.28
19 16 0.55
20 5 0.17
ACGTcount: A:0.25, C:0.42, G:0.19, T:0.15
Consensus pattern (19 bp):
CACACGAGCCCATTAGGCC
Found at i:26299610 original size:126 final size:124
Alignment explanation
Indices: 26299371--26299748 Score: 517
Period size: 126 Copynumber: 3.0 Consensus size: 124
26299361 TAAGCATTTT
*** * **
26299371 TAGGTC-CTGGAAGAAATAATTTCGAGTTGATGTTTCTGATAAAATAGTATAAAATCGCTTCTAG
1 TAGGTCAC-GGAAGAAATAATTT-TTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAG
** *
26299435 CAGGATGCTATTTGAGAAGAATTTGTGAAATTACGCCCTCGTGGATGCGCTTTTGCTATAG
64 CAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTAGATGCGCTTTTGCTATAG
26299496 TAGGTCACGGAAGAAATAATTATTTTTTCGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAG
1 TAGGTCACGGAAGAAATAATT-TTTTTT-GACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAG
* *
26299561 CAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGGCCTTGTCAG-TGCGCTTTTGCTATAG
64 CAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGT-AGATGCGCTTTTGCTATAG
* ** * *
26299622 TAGGTCATGTTAGAAATAATTTTTTTTGACGTTTCTGAGCAAACAATATAAAATCGCTTCTAGCA
1 TAGGTCACGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
* * * *
26299687 GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTAGATGCGCTTTTGCTATAG
26299746 TAG
1 TAG
26299749 CATGTTTGGG
Statistics
Matches: 226, Mismatches: 22, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
123 1 0.00
124 90 0.40
125 27 0.12
126 107 0.47
127 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33
Consensus pattern (124 bp):
TAGGTCACGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTAGATGCGCTTTTGCTATAG
Found at i:26299717 original size:124 final size:126
Alignment explanation
Indices: 26299418--26299748 Score: 506
Period size: 124 Copynumber: 2.6 Consensus size: 126
26299408 GATAAAATAG
** *
26299418 TATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATTACGCCCTCGTGGATGC
1 TATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTAGATGC
* *
26299483 GCTTTTGCTATAGTAGGTCACGGAAGAAATAATTATTTTTTCGACGTTTCTGAGCAAATAG
66 GCTTTTGCTATAGTAGGTCACGGAAGAAATAATTATTTTTTCGACGTTTCTGAGCAAACAA
* *
26299544 TATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGGCCTTGTCAG-TG
1 TATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGT-AGATG
* **
26299608 CGCTTTTGCTATAGTAGGTCATGTTAGAAATAATT-TTTTTT-GACGTTTCTGAGCAAACAA
65 CGCTTTTGCTATAGTAGGTCACGGAAGAAATAATTATTTTTTCGACGTTTCTGAGCAAACAA
* *
26299668 TATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGC
1 TATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTAGATGC
* *
26299733 ACTTTTGCTACAGTAG
66 GCTTTTGCTATAGTAG
26299749 CATGTTTGGG
Statistics
Matches: 187, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
123 1 0.01
124 90 0.48
125 6 0.03
126 89 0.48
127 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (126 bp):
TATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTAGATGC
GCTTTTGCTATAGTAGGTCACGGAAGAAATAATTATTTTTTCGACGTTTCTGAGCAAACAA
Found at i:26302992 original size:23 final size:23
Alignment explanation
Indices: 26302932--26303342 Score: 272
Period size: 23 Copynumber: 16.9 Consensus size: 23
26302922 AAATTATGTA
*
26302932 AAATTAGGTTAGGGTTTTTAAGT
1 AAATTAGGTTAGGGTTTTTAATT
* *
26302955 GAA--GGGTTTAGGGTTTTTAATTT
1 AAATTAGG-TTAGGGTTTTTAA-TT
*
26302978 AATTAGGTTAAGGTTAGGGTTTTAAAGTT
1 AA--A--TT-AGGTTAGGGTTTTTAA-TT
**
26303007 -AA-GGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTTTAATT
26303028 AAATTAGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTTTAATT
26303051 AAATTAGATTAAGGTTAGGGTTTTTAAGTT
1 --A--A-ATT-AGGTTAGGGTTTTTAA-TT
**
26303081 -AA-GGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTTTAATT
26303102 AAATTAAGTTAGGGTTAGGGTTTTTAATT
1 --A--AA-TTA-GGTTAGGGTTTTTAATT
*
26303131 AAATTAGGTTGGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTTTAATT
26303154 AAATGAGGTTAAGGTTAGGG-TTTTAAGTT
1 -AA--A--TT-AGGTTAGGGTTTTTAA-TT
**
26303183 -AA-GGGGTTAGGG-TTTTAATT
1 AAATTAGGTTAGGGTTTTTAATT
26303203 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 -AA--A--TTA-GGTTAGGGTTTTTAATT
26303232 AAATTAGGTTAGGGTTTTTAAGTT
1 AAATTAGGTTAGGGTTTTTAA-TT
* * *
26303256 -AA-GAGTTTAAGG-TTTTACATT
1 AAATTAGGTTAGGGTTTTTA-ATT
*
26303277 AAATTAGGTTAGGGTTGTTAATT
1 AAATTAGGTTAGGGTTTTTAATT
26303300 AAATTAGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTTTAATT
26303323 AAATTAGGTTAGGGTTTTTA
1 AAATTAGGTTAGGGTTTTTA
26303343 TTACATCAAA
Statistics
Matches: 311, Mismatches: 30, Indels: 94
0.71 0.07 0.22
Matches are distributed among these distances:
20 2 0.01
21 27 0.09
22 55 0.18
23 106 0.34
24 16 0.05
25 6 0.02
26 5 0.02
27 3 0.01
28 22 0.07
29 65 0.21
30 4 0.01
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (23 bp):
AAATTAGGTTAGGGTTTTTAATT
Found at i:26302995 original size:29 final size:28
Alignment explanation
Indices: 26302962--26303269 Score: 182
Period size: 29 Copynumber: 12.1 Consensus size: 28
26302952 AGTGAAGGGT
26302962 TTAGGGTTTTTAATTTAATTAGGTTAAGG
1 TTAGGGTTTTTAATTTAA-TAGGTTAAGG
* *
26302991 TTAGGGTTTTAAAGTT-A-AGG----GG
1 TTAGGGTTTTTAATTTAATAGGTTAAGG
26303013 TTAGGGTTTTTAA-TTAA-A--TT-AGG
1 TTAGGGTTTTTAATTTAATAGGTTAAGG
* *
26303036 TTAGGGTTTTTAATTAAATTAGATTAAGG
1 TTAGGGTTTTTAATTTAA-TAGGTTAAGG
*
26303065 TTAGGGTTTTTAAGTT-A-AGG----GG
1 TTAGGGTTTTTAATTTAATAGGTTAAGG
* * *
26303087 TTAGGGTTTTTAATTAAATTAAGTTAGGG
1 TTAGGGTTTTTAATTTAA-TAGGTTAAGG
26303116 TTAGGGTTTTTAA-TTAA-A--TT-AGG
1 TTAGGGTTTTTAATTTAATAGGTTAAGG
* *
26303139 TTGGGGTTTTTAATTAAATGAGGTTAAGG
1 TTAGGGTTTTTAATTTAAT-AGGTTAAGG
*
26303168 TTAGGG-TTTTAAGTT-A-AGG----GG
1 TTAGGGTTTTTAATTTAATAGGTTAAGG
* *
26303189 TTAGGG-TTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTTAA-TAGGTTAAGG
26303217 TTAGGGTTTTTAA-TTAA-A--TT-AGG
1 TTAGGGTTTTTAATTTAATAGGTTAAGG
* * *
26303240 TTAGGGTTTTTAAGTTAAGAGTTTAAGG
1 TTAGGGTTTTTAATTTAATAGGTTAAGG
26303268 TT
1 TT
26303270 TTACATTAAA
Statistics
Matches: 222, Mismatches: 21, Indels: 73
0.70 0.07 0.23
Matches are distributed among these distances:
21 17 0.08
22 33 0.15
23 45 0.20
24 17 0.08
25 6 0.03
26 9 0.04
27 3 0.01
28 32 0.14
29 60 0.27
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (28 bp):
TTAGGGTTTTTAATTTAATAGGTTAAGG
Found at i:26303011 original size:51 final size:51
Alignment explanation
Indices: 26302937--26303043 Score: 169
Period size: 51 Copynumber: 2.1 Consensus size: 51
26302927 ATGTAAAATT
* * *
26302937 AGGTTAGGGTTTTTAAGTGAAGGGTTTAGGGTTTTTAATTTAATTAGGTTA
1 AGGTTAGGGTTTTAAAGTGAAGGGGTTAGGGTTTTTAATTAAATTAGGTTA
*
26302988 AGGTTAGGGTTTTAAAGTTAAGGGGTTAGGGTTTTTAATTAAATTAGGTTA
1 AGGTTAGGGTTTTAAAGTGAAGGGGTTAGGGTTTTTAATTAAATTAGGTTA
*
26303039 GGGTT
1 AGGTT
26303044 TTTAATTAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (51 bp):
AGGTTAGGGTTTTAAAGTGAAGGGGTTAGGGTTTTTAATTAAATTAGGTTA
Found at i:26303050 original size:74 final size:72
Alignment explanation
Indices: 26302937--26303342 Score: 311
Period size: 74 Copynumber: 5.5 Consensus size: 72
26302927 ATGTAAAATT
* * * * *
26302937 AGGTTAGGGTTTTTAAGTGAA--GGGTTTAGGGTTTTTAATTTAATTAGGTTAAGGTTAGGGTTT
1 AGGTTAGGGTTTTTAATTAAATTAGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT
26303000 TAAAGTTA
65 TAAAGTTA
* *
26303008 AGGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGATTAAGGTTAGGGTT
1 A--GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT
*
26303073 TTTAAGTTA
64 TTAAAGTTA
*
26303082 AGGGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTGGGGTT
1 A--GGTTAGGGTTTTTAATT--A--AA-TTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
***** *
26303147 TTTAATTAAATGAGGTTA
58 AGGGTTTTAA--A-GTTA
**
26303165 AGGTTAGGG-TTTTAAGTT-AA-GGGGTTAGGG-TTTTAATTAAATTAGGTTAGGGTTAGGGTTT
1 AGGTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT
*
26303226 TTAA-TTAAA
65 TAAAGTT--A
* * *
26303235 TTAGGTTAGGGTTTTTAAGTT-AA-GAGTTTAAGG-TTTTACATTAAATTAGGTTAGGGTT---G
1 --AGGTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTA-ATTAAATTAGGTTAGGGTTAGGG
26303294 TTAATTAAA-TT-
62 TT--TTAAAGTTA
26303305 AGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTA
26303343 TTACATCAAA
Statistics
Matches: 277, Mismatches: 33, Indels: 51
0.77 0.09 0.14
Matches are distributed among these distances:
67 2 0.01
68 20 0.07
69 7 0.03
70 7 0.03
71 4 0.01
72 35 0.13
73 55 0.20
74 82 0.30
75 2 0.01
76 3 0.01
78 2 0.01
79 3 0.01
80 39 0.14
81 10 0.04
82 1 0.00
83 5 0.02
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (72 bp):
AGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTT
AAAGTTA
Found at i:26303103 original size:21 final size:22
Alignment explanation
Indices: 26303063--26303103 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
26303053 ATTAGATTAA
26303063 GGTTAGGGTTTTTAAGTTAAGG
1 GGTTAGGGTTTTTAAGTTAAGG
26303085 GGTTAGGGTTTTTAA-TTAA
1 GGTTAGGGTTTTTAAGTTAA
26303104 ATTAAGTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (22 bp):
GGTTAGGGTTTTTAAGTTAAGG
Found at i:26303192 original size:21 final size:20
Alignment explanation
Indices: 26303166--26303204 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
26303156 ATGAGGTTAA
26303166 GGTTAGGGTTTTAAGTTAAGG
1 GGTTAGGGTTTTAA-TTAAGG
26303187 GGTTAGGGTTTTAATTAA
1 GGTTAGGGTTTTAATTAA
26303205 ATTAGGTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.41
Consensus pattern (20 bp):
GGTTAGGGTTTTAATTAAGG
Found at i:26303290 original size:68 final size:67
Alignment explanation
Indices: 26303105--26303324 Score: 232
Period size: 68 Copynumber: 3.1 Consensus size: 67
26303095 TTTAATTAAA
* *
26303105 TTAAGTT-AG-GGTTAGGGTTTTTAATTAAATTAGGTTGGGGTTTTTAATTAAATGAGGTTAAGG
1 TTAAGTTAAGAGGTTAAGG-TTTTAATTAAATTAGGTTAGGGTTTTTAATT-AA--A--TT-AGG
26303168 TTAGGG-TT
59 TTAGGGTTT
* *
26303176 TTAAGTTAAGGGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGT
1 TTAAGTTAAGAGGTTAAGGTTTTAATT-AA--A--TTA-GGTTAGGGTTTTTAATTAAATTAGGT
26303241 TAGGGTTT
60 TAGGGTTT
* *
26303249 TTAAGTTAAGAGTTTAAGGTTTTACATTAAATTAGGTTAGGGTTGTTAATTAAATTAGGTTAGGG
1 TTAAGTTAAGAGGTTAAGGTTTTA-ATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
26303314 TTT
65 TTT
26303317 TTAA-TTAA
1 TTAAGTTAA
26303325 ATTAGGTTAG
Statistics
Matches: 134, Mismatches: 5, Indels: 24
0.82 0.03 0.15
Matches are distributed among these distances:
67 4 0.03
68 37 0.28
69 3 0.02
71 8 0.06
72 19 0.14
73 37 0.28
74 3 0.02
75 2 0.01
77 5 0.04
78 16 0.12
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.44
Consensus pattern (67 bp):
TTAAGTTAAGAGGTTAAGGTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGT
TT
Found at i:26303885 original size:18 final size:18
Alignment explanation
Indices: 26303862--26303896 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26303852 CGAAAAATGA
*
26303862 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
26303880 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
26303897 AAATGCACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:26304553 original size:7 final size:7
Alignment explanation
Indices: 26304543--26304567 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26304533 TTATATACAT
26304543 AATACTA
1 AATACTA
26304550 AATACTA
1 AATACTA
26304557 AATACTA
1 AATACTA
26304564 AATA
1 AATA
26304568 TCAATCGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:26305785 original size:12 final size:11
Alignment explanation
Indices: 26305751--26305785 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
26305741 GAATTTTGGA
26305751 AGGAAATTGAG
1 AGGAAATTGAG
26305762 AGG-AATTGAG
1 AGGAAATTGAG
26305772 AGGAAATATGAG
1 AGGAAAT-TGAG
26305784 AG
1 AG
26305786 AGGATTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:26307014 original size:26 final size:26
Alignment explanation
Indices: 26306985--26307055 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
26306975 AACATATCGA
*
26306985 TTCATAGCTTGTGTGAGCAGACCCAT
1 TTCACAGCTTGTGTGAGCAGACCCAT
26307011 TTCACAGCTTGTGTGAGCAGACCCAT
1 TTCACAGCTTGTGTGAGCAGACCCAT
26307037 TTCACAGCTTGTGTGAGCA
1 TTCACAGCTTGTGTGAGCA
26307056 CTATTGAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.30
Consensus pattern (26 bp):
TTCACAGCTTGTGTGAGCAGACCCAT
Found at i:26308560 original size:76 final size:76
Alignment explanation
Indices: 26308429--26308581 Score: 279
Period size: 76 Copynumber: 2.0 Consensus size: 76
26308419 ATGTTATTCC
*
26308429 AAATGTTTGGTAATGCTCTATAACCCTAATTCGACATTGGAGACGGGTTAGGGGTGTTACACATT
1 AAATATTTGGTAATGCTCTATAACCCTAATTCGACATTGGAGACGGGTTAGGGGTGTTACACATT
26308494 CAGTCAAAACT
66 CAGTCAAAACT
* *
26308505 AAATATTTGGTAATGCTCTATAACCCTAATTCGACGTTGGAGACGGGTTAGGGGTGTTATACATT
1 AAATATTTGGTAATGCTCTATAACCCTAATTCGACATTGGAGACGGGTTAGGGGTGTTACACATT
26308570 CAGTCAAAACT
66 CAGTCAAAACT
26308581 A
1 A
26308582 CTTACAACAC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (76 bp):
AAATATTTGGTAATGCTCTATAACCCTAATTCGACATTGGAGACGGGTTAGGGGTGTTACACATT
CAGTCAAAACT
Found at i:26313173 original size:25 final size:26
Alignment explanation
Indices: 26313054--26313180 Score: 105
Period size: 26 Copynumber: 4.9 Consensus size: 26
26313044 TCTCATCCCT
* * *
26313054 ATTTTACCCCCA-AAAATATTTTGATG
1 ATTTTACCCCTAGTAAA-ATTTTGACG
** * * *
26313080 ATTTTACCTTTGGTAAAAGTTTAACG
1 ATTTTACCCCTAGTAAAATTTTGACG
** * * *
26313106 ATTTTACCATTGGCAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGACG
26313132 ATTTTACCCCTAGTAAAATTTTGACG
1 ATTTTACCCCTAGTAAAATTTTGACG
*
26313158 ATTTT-TCCCTAGTAAAATTTTGA
1 ATTTTACCCCTAGTAAAATTTTGA
26313181 GAAAACATGT
Statistics
Matches: 81, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
25 17 0.21
26 61 0.75
27 3 0.04
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACG
Found at i:26322533 original size:23 final size:22
Alignment explanation
Indices: 26322488--26322546 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
26322478 TAAAGGGTGT
* * *
26322488 TTACAAATTAAATC-TCTACGA
1 TTACAAATCATATCTTCTAAGA
26322509 TTACAAAATCATATCTTCTAAGA
1 TTAC-AAATCATATCTTCTAAGA
* *
26322532 TTGCATATCATATCT
1 TTACAAATCATATCT
26322547 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 4 0.13
22 18 0.58
23 9 0.29
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (22 bp):
TTACAAATCATATCTTCTAAGA
Found at i:26337151 original size:17 final size:16
Alignment explanation
Indices: 26337129--26337160 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
26337119 TTAATCACTT
26337129 TAATATTAAATTTAATC
1 TAATATT-AATTTAATC
26337146 TAATATTAATTTAAT
1 TAATATTAATTTAAT
26337161 ATTAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATATTAATTTAATC
Found at i:26337209 original size:37 final size:36
Alignment explanation
Indices: 26337162--26337231 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
26337152 TAATTTAATA
*
26337162 TTAAATTAATAA-AATACAATTAAGATAAGTATTAAAT
1 TTAAATTAATAATAA-ACAATTAAAATAA-TATTAAAT
* *
26337199 TTAATTTAATAATAAACTATTAAAATAATATTA
1 TTAAATTAATAATAAACAATTAAAATAATATTA
26337232 TTTTAATAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (36 bp):
TTAAATTAATAATAAACAATTAAAATAATATTAAAT
Found at i:26337228 original size:67 final size:67
Alignment explanation
Indices: 26337157--26337365 Score: 217
Period size: 67 Copynumber: 3.1 Consensus size: 67
26337147 AATATTAATT
26337157 TAATATTAAATTAATAAAATACAATTAAGATAAGTATTAAATTTAATTTAATAATAAACTATTAA
1 TAATATTAAATTAATAAAATACAATTAAGATAAGTATTAAATTTAATTTAATAATAAACTATTAA
26337222 AA
66 AA
** *** ** * * ** ***
26337224 TAATATTATTTTAATAGTTTATTATTAA-ATTAAAT-TTAATACTT-ATCTTAATTGTATTTTAT
1 TAATATTAAATTAATAAAATACAATTAAGA-TAAGTATTAA-ATTTAAT-TTAATAATAAACTAT
**
26337286 TAATT
63 TAAAA
26337291 TAATATTAAATTAATAAAATACAATTAAGATAAGTATTAAATTTAATTTAATAATAAACTATTAA
1 TAATATTAAATTAATAAAATACAATTAAGATAAGTATTAAATTTAATTTAATAATAAACTATTAA
26337356 AA
66 AA
*
26337358 TATTATTA
1 TAATATTA
26337366 TTTTTGGACT
Statistics
Matches: 103, Mismatches: 33, Indels: 12
0.70 0.22 0.08
Matches are distributed among these distances:
66 7 0.07
67 89 0.86
68 7 0.07
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (67 bp):
TAATATTAAATTAATAAAATACAATTAAGATAAGTATTAAATTTAATTTAATAATAAACTATTAA
AA
Found at i:26337286 original size:37 final size:36
Alignment explanation
Indices: 26337224--26337293 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
26337214 ACTATTAAAA
*
26337224 TAATATTATTTTAATAGTTTATTATTAAATTAAATT
1 TAATATTATCTTAATAGTTTATTATTAAATTAAATT
* *
26337260 TAATACTTATCTTAATTGTATT-TTATTAATTTAA
1 TAATA-TTATCTTAATAGT-TTATTATTAAATTAA
26337294 TATTAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTATTATTAAATTAAATT
Found at i:26339002 original size:14 final size:15
Alignment explanation
Indices: 26338969--26339000 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26338959 TATGCATGCA
*
26338969 AAATATAAAAAACAT
1 AAATACAAAAAACAT
26338984 AAATACAAAAAACAT
1 AAATACAAAAAACAT
26338999 AA
1 AA
26339001 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (15 bp):
AAATACAAAAAACAT
Found at i:26340844 original size:20 final size:20
Alignment explanation
Indices: 26340816--26340874 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
26340806 CAGAGGTATC
26340816 GAAGTACAAATAGGGGCACA
1 GAAGTACAAATAGGGGCACA
* * * * *
26340836 TATGTACAAACAGGGGTACC
1 GAAGTACAAATAGGGGCACA
26340856 GAAGTACAAATAGGGGCAC
1 GAAGTACAAATAGGGGCAC
26340875 GTATCAAAGC
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.41, C:0.17, G:0.29, T:0.14
Consensus pattern (20 bp):
GAAGTACAAATAGGGGCACA
Found at i:26342842 original size:6 final size:7
Alignment explanation
Indices: 26342824--26342851 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
26342814 AAAGTTATGA
26342824 ATTTTTT
1 ATTTTTT
26342831 ATTTTTT
1 ATTTTTT
26342838 ATTTTTT
1 ATTTTTT
26342845 ATTTTTT
1 ATTTTTT
26342852 GAATTGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
ATTTTTT
Found at i:26344555 original size:45 final size:45
Alignment explanation
Indices: 26344439--26344556 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 45
26344429 ATATAGTGTT
* * * *
26344439 ATAGTGTTTTTCAACTATTGTCTTACACGTTTGAGTCGTGATGCC
1 ATAGTGTCTTTCAGCTATAGTCTTACTCGTTTGAGTCGTGATGCC
* * *
26344484 ATAGTGTCTTTTAGCTATAGTCTTACTCGTTTGATTCGTGATGTC
1 ATAGTGTCTTTCAGCTATAGTCTTACTCGTTTGAGTCGTGATGCC
* *
26344529 ATATTGTCTTTCAGCTATGGTCTTACTC
1 ATAGTGTCTTTCAGCTATAGTCTTACTC
26344557 ATATTTCAAC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.45
Consensus pattern (45 bp):
ATAGTGTCTTTCAGCTATAGTCTTACTCGTTTGAGTCGTGATGCC
Found at i:26349469 original size:21 final size:25
Alignment explanation
Indices: 26349445--26349502 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 25
26349435 TTTTTGTACG
26349445 AAATTACTAAAATT-CTT-A-AA-A
1 AAATTACTAAAATTCCTTAATAATA
26349466 AAATTACT-AAATTCCTTAATAATA
1 AAATTACTAAAATTCCTTAATAATA
*
26349490 AAATTACCAAAAT
1 AAATTACTAAAAT
26349503 CTTTTATAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 5 0.16
21 11 0.35
22 1 0.03
23 2 0.06
24 8 0.26
25 4 0.13
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (25 bp):
AAATTACTAAAATTCCTTAATAATA
Found at i:26349511 original size:24 final size:23
Alignment explanation
Indices: 26349445--26349511 Score: 66
Period size: 24 Copynumber: 3.0 Consensus size: 23
26349435 TTTTTGTACG
*
26349445 AAATTACTAAAAT-TCTTA-AAA
1 AAATTACTAAAATCTTTTATAAA
* * *
26349466 AAATTACTAAATTCCTTAATAATA
1 AAATTACTAAAATCTTTTATAA-A
*
26349490 AAATTACCAAAATCTTTTATAA
1 AAATTACTAAAATCTTTTATAA
26349512 CTTTATAATG
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 12 0.34
22 2 0.06
23 2 0.06
24 19 0.54
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (23 bp):
AAATTACTAAAATCTTTTATAAA
Found at i:26349699 original size:20 final size:20
Alignment explanation
Indices: 26349673--26349719 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
26349663 GATTAACTCA
*
26349673 ATCTCTTACAAAATTATTGG
1 ATCTCTTACAAAATTAGTGG
*
26349693 ATTTCTTACAAAATTAGTGG
1 ATCTCTTACAAAATTAGTGG
26349713 ATCTCTT
1 ATCTCTT
26349720 GTAGTATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.43
Consensus pattern (20 bp):
ATCTCTTACAAAATTAGTGG
Found at i:26349825 original size:24 final size:25
Alignment explanation
Indices: 26349798--26349871 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 25
26349788 AAAATTATCC
26349798 AAAATATTTAATTTCTTACAA-ATT
1 AAAATATTTAATTTCTTACAACATT
* *
26349822 AAAATTATTAAATCTCTTACAACATT
1 AAAA-TATTTAATTTCTTACAACATT
** * *
26349848 TTAAT-TTTAATTTATTAAAACATT
1 AAAATATTTAATTTCTTACAACATT
26349872 GTAAATTATT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
24 19 0.47
25 16 0.40
26 5 0.12
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.46
Consensus pattern (25 bp):
AAAATATTTAATTTCTTACAACATT
Found at i:26350308 original size:43 final size:42
Alignment explanation
Indices: 26350261--26350394 Score: 119
Period size: 43 Copynumber: 3.1 Consensus size: 42
26350251 GAACATGACA
*
26350261 TTTAGCGGCGCTTCT-CATAAAAACGCTGCTAAATGTCATGTTC
1 TTTAGCGGC-CTTTTAC-TAAAAACGCTGCTAAATGTCATGTTC
* * * **
26350304 TTTAGCGGCATTTTTAGTAACAACGCCACTAAATGTCATGTTC
1 TTTAGCGGC-CTTTTACTAAAAACGCTGCTAAATGTCATGTTC
* * * *
26350347 TTTAGTGGCACTTTTACTAAAAATG-TCGCGAAAGGTCATGTTC
1 TTTAGCGGC-CTTTTACTAAAAACGCT-GCTAAATGTCATGTTC
26350390 TTTAG
1 TTTAG
26350395 TGACATTTGT
Statistics
Matches: 73, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (42 bp):
TTTAGCGGCCTTTTACTAAAAACGCTGCTAAATGTCATGTTC
Found at i:26350395 original size:43 final size:43
Alignment explanation
Indices: 26350295--26350396 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 43
26350285 GCTGCTAAAT
* * * * * *
26350295 GTCATGTTCTTTAGCGGCATTTTTAGTAACAACGCCACTAAAT
1 GTCATGTTCTTTAGTGGCACTTTTACTAAAAACGCCACGAAAG
* * *
26350338 GTCATGTTCTTTAGTGGCACTTTTACTAAAAATGTCGCGAAAG
1 GTCATGTTCTTTAGTGGCACTTTTACTAAAAACGCCACGAAAG
26350381 GTCATGTTCTTTAGTG
1 GTCATGTTCTTTAGTG
26350397 ACATTTGTGG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (43 bp):
GTCATGTTCTTTAGTGGCACTTTTACTAAAAACGCCACGAAAG
Found at i:26356696 original size:59 final size:59
Alignment explanation
Indices: 26356582--26356784 Score: 288
Period size: 59 Copynumber: 3.5 Consensus size: 59
26356572 TATGATATTC
* * *
26356582 ATTATGAAATATGATCATTTA--T--TTAACCGAAGATAAATTAATTATTCATAGAATT
1 ATTATGAAATATGATTATTTATTTAATTAATCGAAAATAAATTAATTATTCATAGAATT
* * * * *
26356637 ATTATGAAACATGATTATTTATTTATTTAATCTAAAATAAATTAATTATTCCTACAATT
1 ATTATGAAATATGATTATTTATTTAATTAATCGAAAATAAATTAATTATTCATAGAATT
*
26356696 ATTATAAAATATGATTATTTATTTAATTAATCGAAAATAAATTAATTATTCATAGAATT
1 ATTATGAAATATGATTATTTATTTAATTAATCGAAAATAAATTAATTATTCATAGAATT
*
26356755 ATTATGAAATATGGTTATTTATTTAATTAA
1 ATTATGAAATATGATTATTTATTTAATTAA
26356785 NNNNNNNNNN
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
55 19 0.15
57 1 0.01
59 109 0.84
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.44
Consensus pattern (59 bp):
ATTATGAAATATGATTATTTATTTAATTAATCGAAAATAAATTAATTATTCATAGAATT
Found at i:26356704 original size:31 final size:29
Alignment explanation
Indices: 26356614--26356765 Score: 89
Period size: 31 Copynumber: 5.1 Consensus size: 29
26356604 TTAACCGAAG
26356614 ATAAATTAATTATTCATAGAATTATTATGAAA
1 ATAAATTAATTATTC-TA-AATTATTAT-AAA
* * * * *
26356646 CAT-GATTATTTATT-T-ATTTAATCTAAA
1 -ATAAATTAATTATTCTAAATTATTATAAA
26356673 ATAAATTAATTATTCCTACAATTATTATAAA
1 ATAAATTAATTATT-CTA-AATTATTATAAA
* * * **
26356704 ATATGATTATTTATT-T-AATTAATCGAAA
1 ATA-AATTAATTATTCTAAATTATTATAAA
*
26356732 ATAAATTAATTATTCATAGAATTATTATGAA
1 ATAAATTAATTATTC-TA-AATTATTATAAA
26356763 ATA
1 ATA
26356766 TGGTTATTTA
Statistics
Matches: 88, Mismatches: 21, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
26 2 0.02
27 21 0.24
28 18 0.20
29 2 0.02
30 2 0.02
31 23 0.26
32 18 0.20
33 2 0.02
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (29 bp):
ATAAATTAATTATTCTAAATTATTATAAA
Found at i:26357065 original size:19 final size:20
Alignment explanation
Indices: 26357041--26357078 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
26357031 ATGGTTATTT
26357041 AATTAATTAATCA-AAAATA
1 AATTAATTAATCATAAAATA
*
26357060 AATTAATTATTCATAAAAT
1 AATTAATTAATCATAAAAT
26357079 TATTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTAATTAATCATAAAATA
Found at i:26357081 original size:59 final size:59
Alignment explanation
Indices: 26356989--26357443 Score: 594
Period size: 59 Copynumber: 7.8 Consensus size: 59
26356979 NNNNNNNNNN
* * * *
26356989 TAATCAAAAATAAATTAATTATTCATAGAATTATTATGAGATATGGTTATTTAATTAAT
1 TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTAAT
*
26357048 TAATCAAAAATAAATTAATTATTCATAAAATTATTATAAAATATGATTATTTATTTAAT
1 TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTAAT
* * ** * *
26357107 TAATCAAAAATTAATTAACTATTTGTATAATTATTATGAAATATGAATATTTATTTAAT
1 TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTAAT
* * * *
26357166 TAATCTAAAATAAACTAATTATTCATAGAATTATTATGAAATATCATTATTTATTTAAT
1 TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTAAT
* * * *
26357225 TAATCTAAAATAAATTAATTATTCATAAAATTATTATGAATTTTGATTATTTAGTTAAT
1 TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTAAT
* ** *
26357284 TAATCAAAAATAAATTAATTATTCGTTGAATTATTATGAAATTTGA-T-TTT-TTT-AT
1 TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTAAT
* * * * *
26357339 TAATTAAAAATTAATTAATTATTCATAAAATTATTATAAAATATAATTATTTAATTAAT
1 TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTAAT
* * * *
26357398 TAATCGAAAATTAATTAATTATTCGTATAATTATTATGAAATATGA
1 TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGA
26357444 CCCATCTTTT
Statistics
Matches: 344, Mismatches: 48, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
55 40 0.12
56 3 0.01
57 6 0.02
58 3 0.01
59 292 0.85
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (59 bp):
TAATCAAAAATAAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTAAT
Found at i:26359423 original size:25 final size:25
Alignment explanation
Indices: 26359395--26359443 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
26359385 ATTGACAGCG
*
26359395 ATGCAGCAGATGACTTTCAACGGCA
1 ATGCAGCAGAGGACTTTCAACGGCA
*
26359420 ATGCAGCAGAGGACTTTCGACGGC
1 ATGCAGCAGAGGACTTTCAACGGC
26359444 GACGGCGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.18
Consensus pattern (25 bp):
ATGCAGCAGAGGACTTTCAACGGCA
Found at i:26370313 original size:53 final size:53
Alignment explanation
Indices: 26370233--26370339 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
26370223 CATATAGGAA
26370233 CAATAAAAAGTAAAAACAAATGAAAACCTGAGGCTAAGAGTCAATGAAAATTG
1 CAATAAAAAGTAAAAACAAATGAAAACCTGAGGCTAAGAGTCAATGAAAATTG
26370286 CAATAAAAAGTAAAAACAAATGAAAACCTGAGGCTAAGAGTCAATGAAAATTG
1 CAATAAAAAGTAAAAACAAATGAAAACCTGAGGCTAAGAGTCAATGAAAATTG
26370339 C
1 C
26370340 TGAAACTCGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.54, C:0.12, G:0.17, T:0.17
Consensus pattern (53 bp):
CAATAAAAAGTAAAAACAAATGAAAACCTGAGGCTAAGAGTCAATGAAAATTG
Found at i:26371569 original size:17 final size:17
Alignment explanation
Indices: 26371537--26371570 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26371527 TCTTGTTGAC
*
26371537 ATTAAACTCCTAAATAA
1 ATTAAACTACTAAATAA
*
26371554 ATTAAACTACTTAATAA
1 ATTAAACTACTAAATAA
26371571 TTATTAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (17 bp):
ATTAAACTACTAAATAA
Found at i:26379066 original size:12 final size:11
Alignment explanation
Indices: 26379035--26379076 Score: 54
Period size: 12 Copynumber: 4.0 Consensus size: 11
26379025 ACTAAAATAA
26379035 ACTAATCTAA-
1 ACTAATCTAAT
26379045 A--AATCTAAT
1 ACTAATCTAAT
26379054 ACTAATACTAAT
1 ACTAAT-CTAAT
26379066 ACTAATCTAAT
1 ACTAATCTAAT
26379077 GCACAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
8 7 0.25
9 1 0.04
10 1 0.04
11 8 0.29
12 11 0.39
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:26379464 original size:38 final size:41
Alignment explanation
Indices: 26379422--26379498 Score: 115
Period size: 38 Copynumber: 2.0 Consensus size: 41
26379412 CAGTAATACA
26379422 AATAAAAAGAAATGTACC-AT-TTTTTATT-TTTTTAAAGT
1 AATAAAAAGAAATGTACCAATGTTTTTATTCTTTTTAAAGT
* *
26379460 AATAAAAATAAATGTACCAATGTTTTTTTTCTTTTTAAA
1 AATAAAAAGAAATGTACCAATGTTTTTATTCTTTTTAAA
26379499 ATAACATGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 17 0.50
39 2 0.06
40 7 0.21
41 8 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (41 bp):
AATAAAAAGAAATGTACCAATGTTTTTATTCTTTTTAAAGT
Found at i:26379646 original size:13 final size:13
Alignment explanation
Indices: 26379628--26379654 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26379618 GAGTCGAAGC
26379628 TCCACTCTCTCGT
1 TCCACTCTCTCGT
26379641 TCCACTCTCTCGT
1 TCCACTCTCTCGT
26379654 T
1 T
26379655 ATTAGTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.44, G:0.07, T:0.41
Consensus pattern (13 bp):
TCCACTCTCTCGT
Found at i:26385586 original size:40 final size:40
Alignment explanation
Indices: 26385536--26385657 Score: 187
Period size: 40 Copynumber: 3.1 Consensus size: 40
26385526 TAAAAAAATT
* *
26385536 AAACCCTAAACCTTAATTTATTTTTTCTTATACCTTAAAC
1 AAACCTTAAACCTTAATTTATTTTTTCTTAAACCTTAAAC
26385576 AAACCTTAAACCTTAATTTATTTTTTCTTAAACCTTAAAC
1 AAACCTTAAACCTTAATTTATTTTTTCTTAAACCTTAAAC
* *
26385616 AAACCTTAAACCTTAA--T-TTTTTTCCTAAACCCTAAAC
1 AAACCTTAAACCTTAATTTATTTTTTCTTAAACCTTAAAC
26385653 AAACC
1 AAACC
26385658 CTAACCCTAA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
37 23 0.29
38 1 0.01
40 54 0.69
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.39
Consensus pattern (40 bp):
AAACCTTAAACCTTAATTTATTTTTTCTTAAACCTTAAAC
Found at i:26386630 original size:14 final size:14
Alignment explanation
Indices: 26386600--26386657 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 14
26386590 TTTTTGAAAA
26386600 TTTTAATTTTAATT
1 TTTTAATTTTAATT
*
26386614 TTTTATATTTTTATT
1 TTTTA-ATTTTAATT
* *
26386629 TTTAAAAGTTTAAATTT
1 TTT-TAA-TTTTAA-TT
26386646 TTTTAATTTTAA
1 TTTTAATTTTAA
26386658 ACTTTTAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
14 5 0.15
15 17 0.50
16 7 0.21
17 5 0.15
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (14 bp):
TTTTAATTTTAATT
Found at i:26386664 original size:24 final size:23
Alignment explanation
Indices: 26386600--26386666 Score: 64
Period size: 24 Copynumber: 2.9 Consensus size: 23
26386590 TTTTTGAAAA
**
26386600 TTTTAATTTT-AATTTTTTATAT
1 TTTTAATTTTAAATTTTAAATAT
* * *
26386622 TTTTATTTTTAAAAGTTTAAATTT
1 TTTTAATTTT-AAATTTTAAATAT
26386646 TTTTAATTTTAAACTTTTAAA
1 TTTTAATTTTAAA-TTTTAAA
26386667 ATTCAAATCT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
22 9 0.26
23 3 0.09
24 23 0.66
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (23 bp):
TTTTAATTTTAAATTTTAAATAT
Found at i:26391004 original size:52 final size:52
Alignment explanation
Indices: 26390926--26391031 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
26390916 TGATAAATGT
26390926 GAGTACTAAACAAGTCAAATGTGTTATTATATATCAAGAAAGAAGTGGAATC
1 GAGTACTAAACAAGTCAAATGTGTTATTATATATCAAGAAAGAAGTGGAATC
* *
26390978 GAGTACTAAATAAGTCAAATGTGTTATTATATATTAAGAAAGAAGTGGAATC
1 GAGTACTAAACAAGTCAAATGTGTTATTATATATCAAGAAAGAAGTGGAATC
26391030 GA
1 GA
26391032 CCTTGACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.28
Consensus pattern (52 bp):
GAGTACTAAACAAGTCAAATGTGTTATTATATATCAAGAAAGAAGTGGAATC
Found at i:26391591 original size:38 final size:37
Alignment explanation
Indices: 26391549--26391621 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
26391539 ATGTGTGGAA
* *
26391549 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
26391587 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
26391622 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:26397559 original size:18 final size:18
Alignment explanation
Indices: 26397536--26397581 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
26397526 GGCAACCCAC
26397536 ATTTATTTTCATTTA-GTA
1 ATTTATTTT-ATTTATGTA
*
26397554 ATTTATTTTATTTATTTA
1 ATTTATTTTATTTATGTA
26397572 ATTTAATTTT
1 ATTT-ATTTT
26397582 GGATTCTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 5 0.20
18 15 0.60
19 5 0.20
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
ATTTATTTTATTTATGTA
Found at i:26397936 original size:50 final size:51
Alignment explanation
Indices: 26397871--26397980 Score: 118
Period size: 51 Copynumber: 2.2 Consensus size: 51
26397861 TGAAAAAGAG
** * *
26397871 AAAAAAGAAGGAAAGG-TGGGCCAAACAACCAAAGAA-AATAAATG-AGGAAA
1 AAAAAAGAAAAAAAGGAAGGGCCAAACAACCAAAGAAGAA-AAA-GAAAGAAA
* * *
26397921 AAAAAAGAAAAAAAGGAAGGGCCAGACGACCAATGAAGAAAAAGAAAGAAA
1 AAAAAAGAAAAAAAGGAAGGGCCAAACAACCAAAGAAGAAAAAGAAAGAAA
26397972 AAAAAAGAA
1 AAAAAAGAA
26397981 GAAGAATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
50 15 0.30
51 33 0.66
52 2 0.04
ACGTcount: A:0.65, C:0.09, G:0.23, T:0.04
Consensus pattern (51 bp):
AAAAAAGAAAAAAAGGAAGGGCCAAACAACCAAAGAAGAAAAAGAAAGAAA
Found at i:26400455 original size:9 final size:10
Alignment explanation
Indices: 26400430--26400454 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26400420 ACTATGTTTG
26400430 AAAAAATTAA
1 AAAAAATTAA
26400440 AAAAAATTAA
1 AAAAAATTAA
26400450 AAAAA
1 AAAAA
26400455 TATACAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAATTAA
Found at i:26400470 original size:18 final size:18
Alignment explanation
Indices: 26400449--26400483 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26400439 AAAAAAATTA
26400449 AAAAAATATACAAATAAT
1 AAAAAATATACAAATAAT
*
26400467 AAAAAATATATAAATAA
1 AAAAAATATACAAATAA
26400484 AAGTATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAAATATACAAATAAT
Found at i:26400471 original size:20 final size:20
Alignment explanation
Indices: 26400430--26400485 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
26400420 ACTATGTTTG
*
26400430 AAAAAAT-TAAAAAAAATTA
1 AAAAAATATAAAAAAAATAA
* *
26400449 AAAAAATATACAAATAATAA
1 AAAAAATATAAAAAAAATAA
*
26400469 AAAATATATAAATAAAA
1 AAAAAATATAAA-AAAA
26400486 GTATATATTG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 7 0.24
20 19 0.66
21 3 0.10
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAAATATAAAAAAAATAA
Found at i:26401072 original size:18 final size:18
Alignment explanation
Indices: 26401019--26401068 Score: 82
Period size: 18 Copynumber: 2.7 Consensus size: 18
26401009 AACTCTGTAA
26401019 TTAGTTTAAATTTAATTT
1 TTAGTTTAAATTTAATTT
26401037 TTAGTTTAAATTTAATTT
1 TTAGTTTAAATTTAATTT
26401055 TTAAGTTTTAAATT
1 TT-AG-TTTAAATT
26401069 ATTTAGTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 20 0.67
19 2 0.07
20 8 0.27
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TTAGTTTAAATTTAATTT
Found at i:26403127 original size:18 final size:19
Alignment explanation
Indices: 26403100--26403138 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26403090 TTTTAGAACT
* *
26403100 TTTTATAAA-TATTTTTAA
1 TTTTAAAAATTATTTTGAA
26403118 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTTGAA
26403137 TT
1 TT
26403139 ATTTTGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:26403335 original size:9 final size:10
Alignment explanation
Indices: 26403314--26403338 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26403304 TAACTCAAAA
26403314 TTTAAATTTT
1 TTTAAATTTT
26403324 TTTAAATTTT
1 TTTAAATTTT
26403334 TTTAA
1 TTTAA
26403339 TCGAATTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTAAATTTT
Found at i:26406857 original size:11 final size:11
Alignment explanation
Indices: 26406835--26406881 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
26406825 AACTAATCCT
26406835 CTCTCAAATTTC
1 CTCTC-AATTTC
26406847 CTCTCAATTTC
1 CTCTCAATTTC
*
26406858 CTCTAAATTTC
1 CTCTCAATTTC
*
26406869 CTCTCAAATTC
1 CTCTCAATTTC
26406880 CT
1 CT
26406882 TCCAAATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
11 27 0.84
12 5 0.16
ACGTcount: A:0.23, C:0.34, G:0.00, T:0.43
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:26406868 original size:22 final size:22
Alignment explanation
Indices: 26406835--26406899 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 22
26406825 AACTAATCCT
*
26406835 CTCTCAAATTTCCTCTCAATTTC
1 CTCT-AAATTTCCTCTCAAATTC
26406858 CTCTAAATTTCCTCTCAAATTC
1 CTCTAAATTTCCTCTCAAATTC
*
26406880 CTTCCAAATTT-CTCTCAAAT
1 C-TCTAAATTTCCTCTCAAAT
26406900 CCATATTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
22 27 0.69
23 12 0.31
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (22 bp):
CTCTAAATTTCCTCTCAAATTC
Found at i:26406898 original size:11 final size:11
Alignment explanation
Indices: 26406834--26406899 Score: 66
Period size: 11 Copynumber: 5.9 Consensus size: 11
26406824 AAACTAATCC
26406834 TCTCTCAAATT
1 TCTCTCAAATT
26406845 TCCTCTC-AATT
1 T-CTCTCAAATT
26406856 TC-CTCTAAATT
1 TCTCTC-AAATT
26406867 TCCTCTCAAATT
1 T-CTCTCAAATT
*
26406879 CCT-TCCAAATT
1 TCTCT-CAAATT
26406890 TCTCTCAAAT
1 TCTCTCAAAT
26406900 CCATATTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
9 3 0.07
10 2 0.04
11 26 0.57
12 12 0.26
13 3 0.07
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:26406969 original size:51 final size:50
Alignment explanation
Indices: 26406863--26406958 Score: 122
Period size: 51 Copynumber: 1.9 Consensus size: 50
26406853 ATTTCCTCTA
26406863 AATTTCCTCTCAAATTCCTTCCAAATTTCTCTCAAATCCATATTTAATCAC
1 AATTTCCTCTCAAATTCCTTCCAAATTTCTCTCAAATCCATATTTAA-CAC
* * * * *
26406914 AATTTGCTCTCAAGTTCC-TCTTAAATTTCTCTTAAATCCCTATTT
1 AATTTCCTCTCAAATTCCTTC-CAAATTTCTCTCAAATCCATATTT
26406959 TTAAATAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 2 0.05
51 37 0.95
ACGTcount: A:0.28, C:0.27, G:0.02, T:0.43
Consensus pattern (50 bp):
AATTTCCTCTCAAATTCCTTCCAAATTTCTCTCAAATCCATATTTAACAC
Found at i:26409291 original size:15 final size:15
Alignment explanation
Indices: 26409271--26409317 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
26409261 TTGAGTTATT
*
26409271 ACTTAAAAACCCTAA
1 ACTTAAAAACCATAA
*
26409286 ACTTAAAAACCATTA
1 ACTTAAAAACCATAA
26409301 ACTTAAAAACCATAA
1 ACTTAAAAACCATAA
26409316 AC
1 AC
26409318 CCTTAACTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.21
Consensus pattern (15 bp):
ACTTAAAAACCATAA
Found at i:26409317 original size:22 final size:22
Alignment explanation
Indices: 26409292--26409855 Score: 635
Period size: 22 Copynumber: 25.7 Consensus size: 22
26409282 CTAAACTTAA
* *
26409292 AAACCATTAACTTAAAAACCAT
1 AAACCCTTAACTTAAAAACCCT
*
26409314 AAACCCTTAACTTAAAAACCAT
1 AAACCCTTAACTTAAAAACCCT
*
26409336 AAACCCTTAACCTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
*
26409358 -AACTCTTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
*
26409379 AAACCCTTAACCTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
26409401 AAACCCTTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
* *
26409423 -AACCCTTAACTTTAAAACCAT
1 AAACCCTTAACTTAAAAACCCT
***
26409444 AAACCCTTAACTTAAAAATTGT
1 AAACCCTTAACTTAAAAACCCT
*
26409466 -AACCCTTAAATTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
* * *
26409487 AGACCCCTAACTTAAAAACCTT
1 AAACCCTTAACTTAAAAACCCT
*
26409509 AACCCCTTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
*
26409531 -AACCCTTAACTTTAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
* *
26409552 AAACCCTTAACTTAAAAATCAT
1 AAACCCTTAACTTAAAAACCCT
* *
26409574 -AACCCTTAAATTAAAAACCAT
1 AAACCCTTAACTTAAAAACCCT
* *
26409595 AAACCCTTAACTTTAAAATCCT
1 AAACCCTTAACTTAAAAACCCT
* *
26409617 ACACCCCTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
*
26409639 AACCCCTTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
* *
26409661 -AATCCTTAAATTAAAAA-CCT
1 AAACCCTTAACTTAAAAACCCT
*
26409681 TAACCCTTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
**
26409703 AAATTCTTAACTT-AAAACCCT
1 AAACCCTTAACTTAAAAACCCT
*
26409724 AAAACCCTAAACTTTTAAATTAAAAACCCT
1 -AAA-CC----C--TTAACTTAAAAACCCT
*
26409754 AAACTCTTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
* * *
26409776 -AACCCTTAACTTTAAATCCTT
1 AAACCCTTAACTTAAAAACCCT
* *
26409797 AAACCCTTAACTTAAAATCCGT
1 AAACCCTTAACTTAAAAACCCT
*
26409819 -AACCCTTAAATTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCT
26409840 AAACCCTTAACTTAAA
1 AAACCCTTAACTTAAA
26409856 TATAATTTTA
Statistics
Matches: 457, Mismatches: 67, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
20 3 0.01
21 165 0.36
22 269 0.59
24 1 0.00
27 1 0.00
28 1 0.00
29 9 0.02
30 8 0.02
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.26
Consensus pattern (22 bp):
AAACCCTTAACTTAAAAACCCT
Found at i:26409382 original size:43 final size:44
Alignment explanation
Indices: 26409292--26409855 Score: 635
Period size: 43 Copynumber: 12.9 Consensus size: 44
26409282 CTAAACTTAA
* * *
26409292 AAACCATTAACTTAAAAACCATAAACCCTTAACTTAAAAACCAT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* *
26409336 AAACCCTTAACCTAAAAACCCT-AACTCTTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
*
26409379 AAACCCTTAACCTAAAAACCCTAAACCCTTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * ***
26409423 -AACCCTTAACTTTAAAACCATAAACCCTTAACTTAAAAATTGT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * * *
26409466 -AACCCTTAAATTAAAAACCCTAGACCCCTAACTTAAAAACCTT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* *
26409509 AACCCCTTAACTTAAAAACCCT-AACCCTTAACTTTAAAACCCT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * * *
26409552 AAACCCTTAACTTAAAAATCAT-AACCCTTAAATTAAAAACCAT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * * *
26409595 AAACCCTTAACTTTAAAATCCTACACCCCTAACTTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * *
26409639 AACCCCTTAACTTAAAAACCCT-AATCCTTAAATTAAAAA-CCT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* **
26409681 TAACCCTTAACTTAAAAACCCTAAATTCTTAACTT-AAAACCCT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* *
26409724 AAAACCCTAAACTTTTAAATTAAAAACCCTAAACTCTTAACTTAAAAACCCT
1 -AAA-CC----C--TTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * * * *
26409776 -AACCCTTAACTTTAAATCCTTAAACCCTTAACTTAAAATCCGT
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
*
26409819 -AACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAA
1 AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
26409856 TATAATTTTA
Statistics
Matches: 443, Mismatches: 63, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
42 27 0.06
43 277 0.63
44 96 0.22
45 3 0.01
49 3 0.01
50 2 0.00
51 27 0.06
52 8 0.02
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.26
Consensus pattern (44 bp):
AAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
Found at i:26409442 original size:108 final size:108
Alignment explanation
Indices: 26409292--26409855 Score: 661
Period size: 108 Copynumber: 5.1 Consensus size: 108
26409282 CTAAACTTAA
* * * * *
26409292 AAACCATTAACTTAAAAACCATAAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAACCC
1 AAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCT
* *
26409357 TAACTCTTAACTTAAAAACCCTAAACCCTTAACCTAAAAACCCT
65 TAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * *
26409401 AAACCCTTAACTTAAAAACCCTAACCCTTAACTTTAAAACCATAAACCCTTAACTTAAAAA-TTG
1 AAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCT-
* * * *
26409465 TAACCCTTAAATTAAAAACCCTAGACCCCTAACTTAAAAACCTT
65 TAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * * *
26409509 AACCCCTTAACTTAAAAACCCTAACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAATCAT
1 AAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTT
* * * *
26409574 AACCCTTAAATTAAAAACCATAAACCCTTAACTTTAAAATCCT
66 AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* * * *
26409617 ACACCCCTAACTTAAAAACCCTAACCCCTTAACTTAAAAACCCT-AATCCTTAAATTAAAAACCT
1 AAACCCTTAACTTAAAAACCCTAA-CCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCT
**
26409681 TAACCCTTAACTTAAAAACCCTAAATTCTTAACTT-AAAACCCT
65 TAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
* *
26409724 AAAACCCTAAACTTTTAAATTAAAAACCCTAAACTCTTAACTTAAAAACCCT-AACCCTTAACTT
1 -AAA-CC----C--TTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTT
* * * * *
26409788 TAAATCCTTAAACCCTTAACTTAAAATCCGT-AACCCTTAAATTAAAAACCCT
57 AAAAACCTT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
26409840 AAACCCTTAACTTAAA
1 AAACCCTTAACTTAAA
26409856 TATAATTTTA
Statistics
Matches: 392, Mismatches: 49, Indels: 29
0.83 0.10 0.06
Matches are distributed among these distances:
107 7 0.02
108 251 0.64
109 40 0.10
110 1 0.00
113 1 0.00
114 2 0.01
115 61 0.16
116 29 0.07
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.26
Consensus pattern (108 bp):
AAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTT
AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT
Found at i:26409757 original size:29 final size:30
Alignment explanation
Indices: 26409695--26409756 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
26409685 CCTTAACTTA
*
26409695 AAAACCCTAAA-TTCTTAACTTAAAACCCT
1 AAAACCCTAAACTTCTTAAATTAAAACCCT
26409724 AAAACCCTAAACTT-TTAAATTAAAAACCCT
1 AAAACCCTAAACTTCTTAAATT-AAAACCCT
26409754 AAA
1 AAA
26409757 CTCTTAACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (30 bp):
AAAACCCTAAACTTCTTAAATTAAAACCCT
Found at i:26414018 original size:3 final size:3
Alignment explanation
Indices: 26413998--26414066 Score: 52
Period size: 3 Copynumber: 22.3 Consensus size: 3
26413988 GGGTCCCTTG
** *
26413998 TTA TTAA TTA TT- TTA TTA TTA AAA TTAA TTA TTT TTA TTA -TA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
*
26414043 TTTA TTA TTG TTA TTGA TTA TTA T
1 -TTA TTA TTA TTA TT-A TTA TTA T
26414067 CATATTTTCT
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
2 4 0.08
3 36 0.69
4 12 0.23
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:26414049 original size:21 final size:22
Alignment explanation
Indices: 26413998--26414066 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 22
26413988 GGGTCCCTTG
26413998 TTATTAATTA-TTTTATTATTA
1 TTATTAATTATTTTTATTATTA
**
26414019 AAATTAATTATTTTTATTA-TA
1 TTATTAATTATTTTTATTATTA
* *
26414040 TTATTTATTATTGTTATTGATTA
1 TTATTAATTATTTTTATT-ATTA
26414063 TTAT
1 TTAT
26414067 CATATTTTCT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 24 0.62
22 9 0.23
23 6 0.15
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (22 bp):
TTATTAATTATTTTTATTATTA
Found at i:26414056 original size:13 final size:13
Alignment explanation
Indices: 26413998--26414066 Score: 54
Period size: 13 Copynumber: 5.3 Consensus size: 13
26413988 GGGTCCCTTG
*
26413998 TTATTAATTATT-
1 TTATTATTTATTA
*
26414010 TTATTATTAAAATTAA
1 TTATTATT--TATT-A
26414026 TTATT-TTTATTA
1 TTATTATTTATTA
26414038 -TATTATTTATTA
1 TTATTATTTATTA
* *
26414050 TTGTTATTGATTA
1 TTATTATTTATTA
26414063 TTAT
1 TTAT
26414067 CATATTTTCT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
11 4 0.09
12 15 0.33
13 16 0.36
14 3 0.07
15 2 0.04
16 5 0.11
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (13 bp):
TTATTATTTATTA
Found at i:26414220 original size:13 final size:14
Alignment explanation
Indices: 26414204--26414234 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
26414194 TATACATATG
26414204 TTTTGTTTTTTA-T
1 TTTTGTTTTTTACT
26414217 TTTTGTTTTTTACT
1 TTTTGTTTTTTACT
26414231 TTTT
1 TTTT
26414235 TATATATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.84
Consensus pattern (14 bp):
TTTTGTTTTTTACT
Found at i:26414271 original size:18 final size:18
Alignment explanation
Indices: 26414225--26414271 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 18
26414215 ATTTTTGTTT
26414225 TTTACTTTTTTATATATAC
1 TTTA-TTTTTTATATATAC
26414244 TTTATATTTTATATATATAC
1 TTTAT-TTTT-TATATATAC
26414264 TTT-TTTTT
1 TTTATTTTT
26414272 GTAAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 5 0.19
19 9 0.35
20 12 0.46
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATTTTTTATATATAC
Found at i:26414279 original size:18 final size:20
Alignment explanation
Indices: 26414238--26414280 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
26414228 ACTTTTTTAT
*
26414238 ATATACTTTATATTTTATAT
1 ATATACTTTATATTTTATAA
*
26414258 ATATACTTT-T-TTTTGTAA
1 ATATACTTTATATTTTATAA
26414276 ATATA
1 ATATA
26414281 TACACATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 11 0.52
19 1 0.05
20 9 0.43
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (20 bp):
ATATACTTTATATTTTATAA
Found at i:26414279 original size:20 final size:20
Alignment explanation
Indices: 26414236--26414283 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
26414226 TTACTTTTTT
*
26414236 ATATATACTTTATATTTTAT
1 ATATATACTTTATATTTTAA
*
26414256 ATATATACTTT-TTTTTGTAA
1 ATATATACTTTATATTT-TAA
26414276 ATATATAC
1 ATATATAC
26414284 ACATGTACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (20 bp):
ATATATACTTTATATTTTAA
Found at i:26418995 original size:7 final size:7
Alignment explanation
Indices: 26418970--26419011 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
26418960 AGTGATGTGA
26418970 AAAAATG
1 AAAAATG
26418977 AAAAGATG
1 AAAA-ATG
26418985 -AAAATG
1 AAAAATG
26418991 AAAAATG
1 AAAAATG
26418998 AAAAA-G
1 AAAAATG
26419004 TAAAAATG
1 -AAAAATG
26419012 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 4 0.13
7 23 0.74
8 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:26419009 original size:21 final size:21
Alignment explanation
Indices: 26418970--26419011 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26418960 AGTGATGTGA
*
26418970 AAAAATGAAAAGATGAAAATG
1 AAAAATGAAAAGATAAAAATG
26418991 AAAAATGAAAA-AGTAAAAATG
1 AAAAATGAAAAGA-TAAAAATG
26419012 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (21 bp):
AAAAATGAAAAGATAAAAATG
Found at i:26420485 original size:132 final size:132
Alignment explanation
Indices: 26420318--26421078 Score: 1236
Period size: 132 Copynumber: 5.8 Consensus size: 132
26420308 ATAGACAACA
* * * * *
26420318 GAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAGCCAATAA
1 GAGCAAATCAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
26420383 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
66 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
26420448 TG
131 TG
* *
26420450 GAGCAAATAAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCCGTAA
1 GAGCAAATCAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
*** **
26420515 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTTGGATATTGTCTCCCTAAGCAGTAG
66 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
26420580 TG
131 TG
* * * * * *
26420582 GAGCAGATCAAAGATGGCAGATTTTACCCCCCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAA
1 GAGCAAATCAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
26420647 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
66 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
26420712 TG
131 TG
26420714 GAGCAAATCAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
1 GAGCAAATCAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
*
26420779 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCTCTAAGCAGTAG
66 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
26420844 TG
131 TG
* *
26420846 GAGCAAATAAAAAATGGCAAATTTTACCTCCCTATGGTTACAGTGGAGTACATTGAAGCCAGTAA
1 GAGCAAATCAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
26420911 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
66 TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
26420976 TG
131 TG
* * * * * *
26420978 GAGCAGACCAAAGATGGCAGATTTTACCTCCCTATGGTTACAGCGGAGTACATTGAAGCCAGTAA
1 GAGCAAATCAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
** *
26421043 TTCTA-TCTCCCTAAGCAGCAGTGGAACAGATTGAAG
66 TTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAAG
26421079 CTACGACGGT
Statistics
Matches: 584, Mismatches: 44, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
131 1 0.00
132 583 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
GAGCAAATCAAAAATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGAGCTTGTCTCCCTAAGCAGTAG
TG
Found at i:26421174 original size:100 final size:100
Alignment explanation
Indices: 26421060--26421694 Score: 887
Period size: 100 Copynumber: 6.3 Consensus size: 100
26421050 TCCCTAAGCA
* * * * *
26421060 GCAGTGGAACAGATTGAAGCTACGACGGTGGATCTGGTTTCCCTGATATTGCCATTAAAAAGATT
1 GCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATT
*
26421125 GAAGCCACAACGGCGGATCTTAATTCCTTAGCAGT
66 GAAGCCACAACGGCGGATCTTACTTCCTTAGCAGT
* *
26421160 GCAGTGGAACAGATTGAAGCCACAACGGCGGACCTGATTTCCCTGATACTGCAATTAAAAAGATT
1 GCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATT
* * *
26421225 GAAGCCATAACTGCGGATCTTACTTCTTTAGCAGT
66 GAAGCCACAACGGCGGATCTTACTTCCTTAGCAGT
* * *
26421260 GCAGTGGAACAGATTGAAGCCATAACGGCGGACCTGATTTCCTTGATATTGCAATTAAAAAGATT
1 GCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATT
26421325 GAAGCCACAACGGCGGATCTTACTTCCTTAGCAGT
66 GAAGCCACAACGGCGGATCTTACTTCCTTAGCAGT
* * * *
26421360 GCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATATTACAATTAAAAAGATT
1 GCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATT
** *
26421425 GAAGCCACAACCACGGATCTTAATTCCTTAGCAGT
66 GAAGCCACAACGGCGGATCTTACTTCCTTAGCAGT
*
26421460 GCAGTGGAACAGATTGAAGCCACAACGGCGGA-CTTGATTTCCCTGATATTGTAATTAAAAAGAT
1 GCAGTGGAACAGATTGAAGCCACAACGGCGGATC-TGATTTCCCTGATATTGCAATTAAAAAGAT
*
26421524 TGAAGCCACAACGGCGGATCTTACTTCTTTAGCAGT
65 TGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGT
* * * * * *
26421560 GCAGTGGAACAGATTGAAGCTACGATGGCGGATCTGGTTTCCCTAATATTGCCATTAAAAAGATT
1 GCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATT
* * * * * *
26421625 GAAGCCACAACGGCGGACCTGATTTTCCTGA-TATT
66 GAAGCCACAACGGCGGATCTTA-CTTCCTTAGCAGT
* ** *
26421660 GCAATTAAAAAGATTGAAGCCACAACGGCGGATCT
1 GCAGTGGAACAGATTGAAGCCACAACGGCGGATCT
26421695 TACTTCTTTA
Statistics
Matches: 475, Mismatches: 57, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
99 1 0.00
100 468 0.99
101 6 0.01
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (100 bp):
GCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATT
GAAGCCACAACGGCGGATCTTACTTCCTTAGCAGT
Found at i:26421341 original size:150 final size:150
Alignment explanation
Indices: 26421120--26421791 Score: 706
Period size: 150 Copynumber: 4.5 Consensus size: 150
26421110 GCCATTAAAA
* * * * * * ** *
26421120 AGATTGAAGCCACAACGGCGGATCTTAATT-CCTTAGCAGTGCAGTGGAACAGATTGAAGCCACA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCTGA-TATTGCAATTAAAAAGATTGAAGCCACA
* * *
26421184 ACGGCGGACCTGATTTCCCTGATACTGCAATTAAAAAGATTGAAGCCATAACTGCGGATCTTACT
65 ACGGCGGACCTGATTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACT
26421249 TCTTTAGCAGTGCAGTGGAAC
130 TCTTTAGCAGTGCAGTGGAAC
* * *
26421270 AGATTGAAGCCATAACGGCGGACCTGATTTCCTTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * * ** * * * ***
26421335 CGGCGGATCTTACTT-CCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTT
66 CGGCGGACCTGATTTCCCTGA-TATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACT
** * * * * ** *
26421399 TCCCT-GATATTACAATTAAAA
130 TCTTTAG-CAGTGCAGTGGAAC
** * * * * * * ** *
26421420 AGATTGAAGCCACAACCACGGATCTTAATT-CCTTAGCAGTGCAGTGGAACAGATTGAAGCCACA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCTGA-TATTGCAATTAAAAAGATTGAAGCCACA
* *
26421484 ACGGCGGACTTGATTTCCCTGATATTGTAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACT
65 ACGGCGGACCTGATTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACT
26421549 TCTTTAGCAGTGCAGTGGAAC
130 TCTTTAGCAGTGCAGTGGAAC
* * * * * *
26421570 AGATTGAAGCTACGATGGCGGATCTGGTTTCCCTAATATTGCCATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
*
26421635 CGGCGGACCTGATTTTCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTT
66 CGGCGGACCTGATTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTT
26421700 CTTTAGCAGTGCAGTGGAAC
131 CTTTAGCAGTGCAGTGGAAC
* * *
26421720 AGATTGAAGCTACGACGGCGGATCT-AGTTTCCCTGATATTGCCATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCCACAACGGCGGATCTGA-TTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACA
26421784 ACGGCGGA
65 ACGGCGGA
26421792 TCTTACTTCC
Statistics
Matches: 414, Mismatches: 100, Indels: 16
0.78 0.19 0.03
Matches are distributed among these distances:
149 8 0.02
150 394 0.95
151 12 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (150 bp):
AGATTGAAGCCACAACGGCGGATCTGATTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
CGGCGGACCTGATTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTT
CTTTAGCAGTGCAGTGGAAC
Found at i:26421724 original size:100 final size:100
Alignment explanation
Indices: 26421620--26421949 Score: 493
Period size: 100 Copynumber: 3.3 Consensus size: 100
26421610 GCCATTAAAA
* * *
26421620 AGATTGAAGCCACAACGGCGGACCT-GATTTTCCTGATATTGCAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACGACGGCGGATCTAG-TTTTCCTGATATTGCAATTAAAAAGATTGAAGCCACA
*
26421684 ACGGCGGATCTTACTTCTTTAGCAGTGCAGTGGAAC
65 ACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAAC
* *
26421720 AGATTGAAGCTACGACGGCGGATCTAGTTTCCCTGATATTGCCATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACGGCGGATCTAGTTTTCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
* *
26421785 CGGCGGATCTTACTTCCTTAGCAGTGCAATGGAAT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAAC
* * *
26421820 AGATTGAAGCTGCGACGGCGGATCTAGTTTTCCTGACATTGCAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACGACGGCGGATCTAGTTTTCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
* * *
26421885 CGGCGGATCTTACTTCCCT-GACGGTGCGGTGGAAC
66 CGGCGGATCTTACTTCCTTAG-CAGTGCAGTGGAAC
*
26421920 AGATTGAAGCTACGACGGCGGATCTGGTTT
1 AGATTGAAGCTACGACGGCGGATCTAGTTT
26421950 CCCCGACATT
Statistics
Matches: 208, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
99 1 0.00
100 206 0.99
101 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (100 bp):
AGATTGAAGCTACGACGGCGGATCTAGTTTTCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
CGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAAC
Found at i:26421726 original size:200 final size:200
Alignment explanation
Indices: 26421070--26421944 Score: 776
Period size: 200 Copynumber: 4.4 Consensus size: 200
26421060 GCAGTGGAAC
* * * *** * * * *
26421070 AGATTGAAGCTACGACGGTGGATCTGGTTTCCCTGATATTGCCATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGACAGTGCAATGAAAAAGATTGAAGCCACAA
* *
26421135 CGGCGGATCTTAATTCCTTAGCAGTGCAGTGGAACAGATTGAAGCCACAACGGCGGACCTGATTT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTT
* * * * * * * *
26421200 CCCTGATACTGCAATTAAAAAGATTGAAGCCATAACTGCGGATCTTACTTCTTTAGCAGTGCAGT
131 CCCTAATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCTGAGCAGTGCAAT
* *
26421265 GGAAC
196 GAAAA
* * * * * * * *
26421270 AGATTGAAGCCATAACGGCGGACCTGATTTCCTTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGACAGTGCAATGAAAAAGATTGAAGCCACAA
* * *
26421335 CGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTT
* * ** * * *
26421400 CCCTGATATTACAATTAAAAAGATTGAAGCCACAACCACGGATCTTAATTCCTTAGCAGTGCAGT
131 CCCTAATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCTGAGCAGTGCAAT
* *
26421465 GGAAC
196 GAAAA
* * * * *
26421470 AGATTGAAGCCACAACGGCGGA-CTTGATTTCCCTGATATTGTAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCCACAACGGCGGATCTT-ACTTCCCTGACAGTGCAATGAAAAAGATTGAAGCCACA
* * * * *
26421534 ACGGCGGATCTTACTTCTTTAGCAGTGCAGTGGAACAGATTGAAGCTACGATGGCGGATCTGGTT
65 ACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATT
* * * * *
26421599 TCCCTAATATTGCCATTAAAAAGATTGAAGCCACAACGGCGGACCTGATTTTCCTGA-TATTGCA
130 TCCCTAATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTA-TTTCCTGAGCAGTGCA
*
26421663 ATTAAAA
194 ATGAAAA
* * * * * * *
26421670 AGATTGAAGCCACAACGGCGGATCTTACTT-CTTTAGCAGTGCAGTGGAACAGATTGAAGCTACG
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGA-CAGTGCAATGAAAAAGATTGAAGCCACA
* * * * ** * *
26421734 ACGGCGGATC-TAGTTTCCCT-GATATTGCCA-TTAAAAAGATTGAAGCCACAACGGCGGATCTT
65 ACGGCGGATCTTA-CTTCCTTAG-CAGTG-CAGTGGAACAGATTGAAGCCACAACGGCGGATCTG
* * ** * ** * ** * *
26421796 ACTTCCTTAGCAGTGCAATGGAATAGATTGAAGCTGCGACGGCGGATC-TAGTTTTCCTGA-CAT
127 ATTTCCCTAATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTA--TTTCCTGAGCAG
*
26421859 TGCAATTAAAA
190 TGCAATGAAAA
* * ** * * * *
26421870 ATATTGAAGCCACAACGGCGGATCTTACTTCCCTGACGGTGCGGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGACAGTGCAATGAAAAAGATTGAAGCCACAA
26421935 CGGCGGATCT
66 CGGCGGATCT
26421945 GGTTTCCCCG
Statistics
Matches: 579, Mismatches: 86, Indels: 19
0.85 0.13 0.03
Matches are distributed among these distances:
199 9 0.02
200 556 0.96
201 14 0.02
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (200 bp):
AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGACAGTGCAATGAAAAAGATTGAAGCCACAA
CGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCCACAACGGCGGATCTGATTT
CCCTAATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCTGAGCAGTGCAAT
GAAAA
Found at i:26421924 original size:150 final size:150
Alignment explanation
Indices: 26421116--26421944 Score: 627
Period size: 150 Copynumber: 5.5 Consensus size: 150
26421106 TATTGCCATT
* * * * *
26421116 AAAAAGATTGAAGCCACAACGGCGGATCTTAATT-CCTTAGCAGTGCAGTGGAACAGATTGAAGC
1 AAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTGA-CAGTGCAATGAAAAAGATTGAAGC
* * * * * * *
26421180 CACAACGGCGGACCTGATTTCCCT-GATACTGCAATTAAAAAGATTGAAGCCATAACTGCGGATC
65 CACAACGGCGGATCTTATTTCCTTAG-TAGTGCAATGAAAAAGATTGAAGCCACAACGGCGGATC
*
26421244 TTACTTCTTTAGCAGTGCAGTG
129 TTACTTCTTTAGCAGTGCAATG
* * * * * * * * *
26421266 GAACAGATTGAAGCCATAACGGCGGACCTGATTTCCTTGATATTGCAATTAAAAAGATTGAAGCC
1 AAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTGACAGTGCAATGAAAAAGATTGAAGCC
* * * * * * * *
26421331 ACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTG
66 ACAACGGCGGATCTTATTTCCTTAGTAGTGCAATGAAAAAGATTGAAGCCACAACGGCGGATCTT
** ** * * * *
26421396 GTTTCCCT-GATATTACAATT
131 ACTTCTTTAG-CAGTGCAATG
** * * * * *
26421416 AAAAAGATTGAAGCCACAACCACGGATCTTAATT-CCTTAGCAGTGCAGTGGAACAGATTGAAGC
1 AAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTGA-CAGTGCAATGAAAAAGATTGAAGC
* * * *
26421480 CACAACGGCGGA-CTTGATTTCCCT-GATATTGTAATTAAAAAGATTGAAGCCACAACGGCGGAT
65 CACAACGGCGGATCTT-ATTTCCTTAG-TAGTGCAATGAAAAAGATTGAAGCCACAACGGCGGAT
*
26421543 CTTACTTCTTTAGCAGTGCAGTG
128 CTTACTTCTTTAGCAGTGCAATG
* * * * * ** * * * * *
26421566 GAACAGATTGAAGCTACGATGGCGGATCTGGTTTCCCTAATATTGCCATTAAAAAGATTGAAGCC
1 AAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTGACAGTGCAATGAAAAAGATTGAAGCC
* * * * *
26421631 ACAACGGCGGACCTGATTTTCCTGA-TATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCT
66 ACAACGGCGGATCTTA-TTTCCTTAGTAGTGCAATGAAAAAGATTGAAGCCACAACGGCGGATCT
*
26421695 TACTTCTTTAGCAGTGCAGTG
130 TACTTCTTTAGCAGTGCAATG
* * * * * * * *
26421716 GAACAGATTGAAGCTACGACGGCGGATC-TAGTTTCCCTGATATTGCCATTAAAAAGATTGAAGC
1 AAAAAGATTGAAGCCACAACGGCGGATCTTA-TTTCCCTGACAGTGCAATGAAAAAGATTGAAGC
* * * * ** *
26421780 CACAACGGCGGATCTTACTTCCTTAGCAGTGCAATGGAATAGATTGAAGCTGCGACGGCGGATC-
65 CACAACGGCGGATCTTATTTCCTTAGTAGTGCAATGAAAAAGATTGAAGCCACAACGGCGGATCT
* * *
26421844 TAGTT-TTCCT-GACATTGCAATT
130 TACTTCTT--TAG-CAGTGCAATG
* * * ** * * *
26421866 AAAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGACGGTGCGGTGGAACAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTGACAGTGCAATGAAAAAGATTGAAGCC
*
26421931 ACGACGGCGGATCT
66 ACAACGGCGGATCT
26421945 GGTTTCCCCG
Statistics
Matches: 529, Mismatches: 133, Indels: 34
0.76 0.19 0.05
Matches are distributed among these distances:
148 2 0.00
149 19 0.04
150 490 0.93
151 18 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (150 bp):
AAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTGACAGTGCAATGAAAAAGATTGAAGCC
ACAACGGCGGATCTTATTTCCTTAGTAGTGCAATGAAAAAGATTGAAGCCACAACGGCGGATCTT
ACTTCTTTAGCAGTGCAATG
Found at i:26423451 original size:3 final size:3
Alignment explanation
Indices: 26423431--26423499 Score: 61
Period size: 3 Copynumber: 22.3 Consensus size: 3
26423421 GGGTCCCTTG
** *
26423431 TTA TTAA TTA TT- TTA TTA TTA AAA TTAA TTA TTT TTA TTA -TA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
26423476 TTTA TTA TTA TTA TTGA TTA TTA T
1 -TTA TTA TTA TTA TT-A TTA TTA T
26423500 CATATTTTCT
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
2 4 0.07
3 38 0.70
4 12 0.22
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:26423482 original size:21 final size:22
Alignment explanation
Indices: 26423431--26423499 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 22
26423421 GGGTCCCTTG
26423431 TTATTAATTA-TTTTATTATTA
1 TTATTAATTATTTTTATTATTA
**
26423452 AAATTAATTATTTTTATTA-TA
1 TTATTAATTATTTTTATTATTA
* *
26423473 TTATTTATTATTATTATTGATTA
1 TTATTAATTATTTTTATT-ATTA
26423496 TTAT
1 TTAT
26423500 CATATTTTCT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 24 0.62
22 9 0.23
23 6 0.15
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (22 bp):
TTATTAATTATTTTTATTATTA
Found at i:26423495 original size:13 final size:13
Alignment explanation
Indices: 26423431--26423499 Score: 63
Period size: 13 Copynumber: 5.3 Consensus size: 13
26423421 GGGTCCCTTG
*
26423431 TTATTAATTATT-
1 TTATTATTTATTA
*
26423443 TTATTATTAAAATTAA
1 TTATTATT--TATT-A
26423459 TTATT-TTTATTA
1 TTATTATTTATTA
26423471 -TATTATTTATTA
1 TTATTATTTATTA
*
26423483 TTATTATTGATTA
1 TTATTATTTATTA
26423496 TTAT
1 TTAT
26423500 CATATTTTCT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
11 4 0.09
12 15 0.32
13 18 0.38
14 3 0.06
15 2 0.04
16 5 0.11
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (13 bp):
TTATTATTTATTA
Found at i:26423498 original size:10 final size:9
Alignment explanation
Indices: 26423431--26423499 Score: 61
Period size: 10 Copynumber: 7.4 Consensus size: 9
26423421 GGGTCCCTTG
26423431 TTATTAATTA
1 TTATT-ATTA
26423441 TT-TTATTA
1 TTATTATTA
**
26423449 TTAAAATTAA
1 TTATTATT-A
*
26423459 TTATTTTTA
1 TTATTATTA
26423468 TTA-TATTA
1 TTATTATTA
26423476 TTTATTATTA
1 -TTATTATTA
26423486 TTATTGATTA
1 TTATT-ATTA
26423496 TTAT
1 TTAT
26423500 CATATTTTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
8 10 0.21
9 17 0.35
10 21 0.44
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (9 bp):
TTATTATTA
Found at i:26424979 original size:126 final size:125
Alignment explanation
Indices: 26424717--26425281 Score: 775
Period size: 126 Copynumber: 4.5 Consensus size: 125
26424707 CCCAAACATG
* *
26424717 CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * * *
26424782 TAGAAGCA-ATTTTATACTATTTGCTCAGAAACGTTAAGTCGAAATTATTTTTCCAGGAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
26424841 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* *
26424905 CTTGCAGCATTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAAGAC
65 CTTGAAGCATT-TTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
*
26424967 CTACTGTAGCAAAAGCGCGTCCAC-ATGGGCG-GAATTTCACAAAATT-TTCTTATAAAGCATCC
1 CTACTGTAGCAAAAGCGCGTCCACGA-GGGCGCG-ATTTCAC-AAATTCTTCTCATAAAGCATCC
* * *
26425029 TGCTT-AGAGCATTTTTTTTAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGA
63 TGCTTGA-AGCATTTTTTAT-ACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAAGA
26425093 C
125 C
*
26425094 CAACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
** *
26425159 TTGAAGCGGTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
* * * * * * * *
26425219 CTATTGTAGCAAAAGCGTGTACAC-ATGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT
26425282 ACTTTGATTT
Statistics
Matches: 394, Mismatches: 32, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
123 2 0.01
124 67 0.17
125 67 0.17
126 178 0.45
127 77 0.20
128 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
Found at i:26454159 original size:15 final size:15
Alignment explanation
Indices: 26454139--26454168 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26454129 TATTTTGATT
26454139 TTAAAATTTAATTAC
1 TTAAAATTTAATTAC
*
26454154 TTAAAATTTGATTAC
1 TTAAAATTTAATTAC
26454169 AAATCTAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (15 bp):
TTAAAATTTAATTAC
Found at i:26454327 original size:34 final size:35
Alignment explanation
Indices: 26454283--26454349 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
26454273 CAGTAAAATA
26454283 TTTTTCGTAAAATGATTT-CGGGAAAATATTTTAC
1 TTTTTCGTAAAATGATTTACGGGAAAATATTTTAC
* *
26454317 TTTTTTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTTCGTAAAATGATTTACGGGAAAATATTTT
26454350 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.06, G:0.13, T:0.48
Consensus pattern (35 bp):
TTTTTCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:26455290 original size:51 final size:51
Alignment explanation
Indices: 26455216--26455316 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 51
26455206 AATTCTCTGC
* *
26455216 TTCCAAAATTCTCATAAATCCATATTTAATTTCAATCTCCTCTCAATTTCA
1 TTCCAAAAATCTCATAAACCCATATTTAATTTCAATCTCCTCTCAATTTCA
* *
26455267 TTCCAAAAATCTC-TCAAACCCATATTTAATTTCAATTTGCTCTCAATTTC
1 TTCCAAAAATCTCAT-AAACCCATATTTAATTTCAATCTCCTCTCAATTTC
26455317 TTTTTTTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 1 0.02
51 44 0.98
ACGTcount: A:0.33, C:0.26, G:0.01, T:0.41
Consensus pattern (51 bp):
TTCCAAAAATCTCATAAACCCATATTTAATTTCAATCTCCTCTCAATTTCA
Found at i:26456523 original size:321 final size:321
Alignment explanation
Indices: 26456078--26456721 Score: 1083
Period size: 321 Copynumber: 2.0 Consensus size: 321
26456068 CAATTGAGTT
* *
26456078 GGGGGTCTGCCATCTTGGCAACGTTATATCGGGAGATGTGCGGGGTGACGCGACCGAGGAGAGTA
1 GGGGGTCTGCCATCTTGGCAACGTTATATCGGGAGATGTGCGGGCTGACGCGACCGAGGAGAGCA
* *
26456143 AAAATCGGAGGTTGCATGTCACTACTGCAGTTATGGGCACGGTTTCGCTTTCCATTTCTACGTCC
66 AAAATCGGAGGTTGCATGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCCATTTCTACGTCA
* *
26456208 TCGAGTGGACCATCCATATACATTCCCACTCATAACGAGGTAAATTTTATATTAGATTTTACAAT
131 TCGAGTAGACCACCCATATACATTCCCACTCATAACGAGGTAAATTTTATATTAGATTTTACAAT
* *
26456273 TCTTATGTAGATTTTTAAAAATAAAAGTATGATAAAAATTTATTTAATTAGGTGGAACCATCCGG
196 TATTATGTAGATTTTTAAAAATAAAAGTATGATAAAAACTTATTTAATTAGGTGGAACCATCCGG
26456338 CAAGTCATGCTCGATTACCTACCTCTCTTGAAGATATACAGCTTCTATTAGACCAACGGTC
261 CAAGTCATGCTCGATTACCTACCTCTCTTGAAGATATACAGCTTCTATTAGACCAACGGTC
* * *
26456399 GGGGGATCTGCCGTCTTGGCAATGTT-TATTGGGAGATGTGCGGGCTGACGCGACCGAGGAGAGC
1 GGGGG-TCTGCCATCTTGGCAACGTTATATCGGGAGATGTGCGGGCTGACGCGACCGAGGAGAGC
* *
26456463 AAAAATCGGAGGTTGCCTGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCTATTTCTACGTC
65 AAAAATCGGAGGTTGCATGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCCATTTCTACGTC
* * *
26456528 ATCGAGTAGACCACCCATATACATTCTCACTCATAATGAGGTGAATTTTATATTAGATTTTACAA
130 ATCGAGTAGACCACCCATATACATTCCCACTCATAACGAGGTAAATTTTATATTAGATTTTACAA
* *
26456593 TTATTATGTAGATTTTTAAAAATAAAAGTATGCTAAAAACTTATTTAATTAGGTGGAACCATCTG
195 TTATTATGTAGATTTTTAAAAATAAAAGTATGATAAAAACTTATTTAATTAGGTGGAACCATCCG
* * *
26456658 GCAAGTCATGCTCGATTACCTACCTCTCTTGAAGATATACGGCTTCTATTGGCCCAACGGTC
260 GCAAGTCATGCTCGATTACCTACCTCTCTTGAAGATATACAGCTTCTATTAGACCAACGGTC
26456720 GG
1 GG
26456722 AAGCACAAGT
Statistics
Matches: 301, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
321 283 0.94
322 18 0.06
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31
Consensus pattern (321 bp):
GGGGGTCTGCCATCTTGGCAACGTTATATCGGGAGATGTGCGGGCTGACGCGACCGAGGAGAGCA
AAAATCGGAGGTTGCATGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCCATTTCTACGTCA
TCGAGTAGACCACCCATATACATTCCCACTCATAACGAGGTAAATTTTATATTAGATTTTACAAT
TATTATGTAGATTTTTAAAAATAAAAGTATGATAAAAACTTATTTAATTAGGTGGAACCATCCGG
CAAGTCATGCTCGATTACCTACCTCTCTTGAAGATATACAGCTTCTATTAGACCAACGGTC
Found at i:26459204 original size:45 final size:45
Alignment explanation
Indices: 26459155--26459333 Score: 151
Period size: 45 Copynumber: 3.6 Consensus size: 45
26459145 ATATTTTGAA
**
26459155 TATTTTGATATTATTTTATGTAATAAAATAAAAAATTTTTTGAGT
1 TATTTTGATATTATTCGATGTAATAAAATAAAAAATTTTTTGAGT
* * * *
26459200 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTAATTTGTACAAATAATTT
1 TATTTTGATATTATTCGATGTAATAAAAT-A----AA-AAATTT-T----TTGA-GT
**
26459257 GAATATTTTGATATTATTTTATGTAATAAAATAAAAAATTTTTTGAGT
1 ---TATTTTGATATTATTCGATGTAATAAAATAAAAAATTTTTTGAGT
26459305 TATTTTGATATTATTCGATGTAATAAAAT
1 TATTTTGATATTATTCGATGTAATAAAAT
26459334 GAGCTTAATT
Statistics
Matches: 105, Mismatches: 14, Indels: 30
0.70 0.09 0.20
Matches are distributed among these distances:
45 54 0.51
46 1 0.01
48 1 0.01
49 2 0.02
50 2 0.02
51 5 0.05
52 1 0.01
53 1 0.01
54 5 0.05
55 2 0.02
56 2 0.02
57 1 0.01
59 1 0.01
60 27 0.26
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (45 bp):
TATTTTGATATTATTCGATGTAATAAAATAAAAAATTTTTTGAGT
Found at i:26459264 original size:60 final size:60
Alignment explanation
Indices: 26459200--26459379 Score: 174
Period size: 60 Copynumber: 3.2 Consensus size: 60
26459190 TTTTTTGAGT
26459200 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTAATTTGTACAAATAATTTGAA
1 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTAATTTGTACAAATAATTTGAA
** * * ** ** *
26459260 TATTTTGATATTATTTTATGTAATAAAAT-A----AA-AAATTTTTTGAGTTATTTTG-A
1 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTAATTTGTACAAATAATTTGAA
26459313 TA---T--TA---TTCGATGTAATAAAATGAGCTTAATTAATTTGTACAAATAATTTGAA
1 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTAATTTGTACAAATAATTTGAA
26459365 TATTTTGATATTATT
1 TATTTTGATATTATT
26459380 TGAGAATTCT
Statistics
Matches: 87, Mismatches: 18, Indels: 30
0.64 0.13 0.22
Matches are distributed among these distances:
45 14 0.16
46 1 0.01
48 2 0.02
50 3 0.03
51 13 0.15
52 3 0.03
53 3 0.03
54 13 0.15
55 3 0.03
57 2 0.02
59 1 0.01
60 29 0.33
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (60 bp):
TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTAATTTGTACAAATAATTTGAA
Found at i:26459310 original size:105 final size:105
Alignment explanation
Indices: 26459135--26459380 Score: 474
Period size: 105 Copynumber: 2.3 Consensus size: 105
26459125 ATTTAATTTT
* *
26459135 ATTTTTACAAATATTTTGAATATTTTGATATTATTTTATGTAATAAAATAAAAAATTTTTTGAGT
1 ATTTGTACAAATAATTTGAATATTTTGATATTATTTTATGTAATAAAATAAAAAATTTTTTGAGT
26459200 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTA
66 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTA
26459240 ATTTGTACAAATAATTTGAATATTTTGATATTATTTTATGTAATAAAATAAAAAATTTTTTGAGT
1 ATTTGTACAAATAATTTGAATATTTTGATATTATTTTATGTAATAAAATAAAAAATTTTTTGAGT
26459305 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTA
66 TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTA
26459345 ATTTGTACAAATAATTTGAATATTTTGATATTATTT
1 ATTTGTACAAATAATTTGAATATTTTGATATTATTT
26459381 GAGAATTCTA
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 139 1.00
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (105 bp):
ATTTGTACAAATAATTTGAATATTTTGATATTATTTTATGTAATAAAATAAAAAATTTTTTGAGT
TATTTTGATATTATTCGATGTAATAAAATGAGCTTAATTA
Found at i:26462675 original size:125 final size:125
Alignment explanation
Indices: 26462453--26462830 Score: 614
Period size: 125 Copynumber: 3.0 Consensus size: 125
26462443 CCCAAACATG
* *
26462453 CTACTATAACAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * ** *
26462518 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA-AAAAAATTTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGATCACAAACGTCAACTCAAAA-TTATTTCTTCCAGGAC
* **
26462578 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTAT
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
26462643 TAGAAACGATTTTATACTATTTGATCACAAACGTCAACTCAAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGATCACAAACGTCAACTCAAAATTATTTCTTCCAGGAC
* *
26462703 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
26462768 TAGAAGCGATTTTATACTATTTGATCACAAACGTCAACTCGAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGATCACAAACGTCAACTCAAAATTATTTCTTCCAGGAC
26462828 CTA
1 CTA
26462831 AAAACCCTAA
Statistics
Matches: 234, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
125 230 0.98
126 4 0.02
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGATCACAAACGTCAACTCAAAATTATTTCTTCCAGGAC
Found at i:26463487 original size:30 final size:31
Alignment explanation
Indices: 26463428--26463487 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
26463418 TGATCATTTT
26463428 AAAAATTACAAAAAAATTTAAAATAATCTTC
1 AAAAATTACAAAAAAATTTAAAATAATCTTC
* *
26463459 AAAAATT-CAAAATATTTATAAAAT-ATCTT
1 AAAAATTACAAAAAAATT-TAAAATAATCTT
26463488 TTCCAAACTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (31 bp):
AAAAATTACAAAAAAATTTAAAATAATCTTC
Found at i:26480796 original size:37 final size:37
Alignment explanation
Indices: 26480746--26480817 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
26480736 AAGGAATAAA
*
26480746 TAAATGGTTTCTACAATGTGAAGGATTTGTATCTGGC
1 TAAATGGTTTCTACAATGTGAAGCATTTGTATCTGGC
26480783 TAAATGGTTTCTACAATGTGAAGCATTTGTATCTG
1 TAAATGGTTTCTACAATGTGAAGCATTTGTATCTG
26480818 ACCTTTTAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (37 bp):
TAAATGGTTTCTACAATGTGAAGCATTTGTATCTGGC
Found at i:26484821 original size:25 final size:26
Alignment explanation
Indices: 26484793--26484857 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
26484783 ATAAAATTTA
*
26484793 TATTTTATATATTA-TCATATTAAAT
1 TATTTTAAATATTATTCATATTAAAT
* *
26484818 TA-TTTAAATATTATTTATTTTAAAT
1 TATTTTAAATATTATTCATATTAAAT
*
26484843 TA-TTTAAATCTTATT
1 TATTTTAAATATTATT
26484858 TGTTACTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 10 0.29
25 25 0.71
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (26 bp):
TATTTTAAATATTATTCATATTAAAT
Found at i:26484935 original size:25 final size:24
Alignment explanation
Indices: 26484890--26484940 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
26484880 AAATGTTCTA
* *
26484890 TATATTATTAATTTTACAAATAGTT
1 TATATTATTAATTTAAAAAATA-TT
26484915 TATATTAATT-ATTTAAAAAATATT
1 TATATT-ATTAATTTAAAAAATATT
26484939 TA
1 TA
26484941 AATTTGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 16 0.70
26 3 0.13
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (24 bp):
TATATTATTAATTTAAAAAATATT
Found at i:26485074 original size:19 final size:20
Alignment explanation
Indices: 26485050--26485088 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
26485040 TAATTTAATA
*
26485050 TAATAGAAATTTC-ATTTAT
1 TAATAGAAACTTCTATTTAT
26485069 TAATAGAAACTTCTATTTAT
1 TAATAGAAACTTCTATTTAT
26485089 AGAAGTAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (20 bp):
TAATAGAAACTTCTATTTAT
Found at i:26489088 original size:20 final size:20
Alignment explanation
Indices: 26489052--26489098 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
26489042 ACAATAAGAG
* *
26489052 ATAA-TAAAGTATGAATAAT
1 ATAATTAAAATATAAATAAT
*
26489071 ATAATTAAAATATAAATATT
1 ATAATTAAAATATAAATAAT
26489091 AT-ATTAAA
1 ATAATTAAA
26489099 TTAAAGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
ATAATTAAAATATAAATAAT
Found at i:26489544 original size:43 final size:43
Alignment explanation
Indices: 26489483--26489584 Score: 150
Period size: 43 Copynumber: 2.4 Consensus size: 43
26489473 ATATCACATA
* *
26489483 ATAATATCCTATAATATCCCATTAGGAATCAAATTGTTAAGAG
1 ATAATATCCTATAATATCCCATTAGGAATCAAATTATTAAAAG
* * * *
26489526 ATAATATCTTGTAATATCCTATTAGGAATCAAATTATTAAAAT
1 ATAATATCCTATAATATCCCATTAGGAATCAAATTATTAAAAG
26489569 ATAATATCCTATAATA
1 ATAATATCCTATAATA
26489585 ATATCCTAAC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36
Consensus pattern (43 bp):
ATAATATCCTATAATATCCCATTAGGAATCAAATTATTAAAAG
Found at i:26493693 original size:46 final size:46
Alignment explanation
Indices: 26493637--26493761 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 46
26493627 TTTGATCTCT
** *
26493637 TGCATATGTTGTAGACTCGAGAATACATGAATAGGTTTCGAACTCC
1 TGCATATGTTGCGGACTTGAGAATACATGAATAGGTTTCGAACTCC
* * * * * * *
26493683 TGTATATGTTGCGGACTTGAGAATAAAGGATTAGGTTTTGAGCTCT
1 TGCATATGTTGCGGACTTGAGAATACATGAATAGGTTTCGAACTCC
26493729 TGCATATGTTGCGGACTTGAGAATACATGAATA
1 TGCATATGTTGCGGACTTGAGAATACATGAATA
26493762 TTAAGACCTG
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 65 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.33
Consensus pattern (46 bp):
TGCATATGTTGCGGACTTGAGAATACATGAATAGGTTTCGAACTCC
Found at i:26497392 original size:49 final size:50
Alignment explanation
Indices: 26497332--26497518 Score: 182
Period size: 50 Copynumber: 3.8 Consensus size: 50
26497322 GATAGTACCA
* * * *
26497332 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTTTCCTGT-GC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATATCGC
* * *
26497381 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGA-GTTCTCATATCGAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCATATCG-C
* ** ** * * *
26497432 -GCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATATCGC
* *
26497481 TGCCAACGCCATGTCCCAGACATGGTCTTACCTGGGAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
26497519 CTCTCATAAC
Statistics
Matches: 113, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
48 3 0.03
49 38 0.34
50 70 0.62
51 2 0.02
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATATCGC
Found at i:26499692 original size:13 final size:13
Alignment explanation
Indices: 26499674--26499708 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
26499664 TTACTAAAAG
26499674 ATAATATCCCATA
1 ATAATATCCCATA
26499687 ATAATATCCCATA
1 ATAATATCCCATA
26499700 ATAATATCC
1 ATAATATCC
26499709 TATTAGGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAATATCCCATA
Found at i:26504259 original size:113 final size:115
Alignment explanation
Indices: 26504058--26504289 Score: 441
Period size: 113 Copynumber: 2.0 Consensus size: 115
26504048 TGTCCATTAA
26504058 AAGTAAAATTTTATATCATTTATGTGTATGTTTATAAATATATATTTTAGAAAAATATTGTAAAT
1 AAGTAAAATTTTATATCATTTATGTGTATG-TTATAAATATATATTTTAGAAAAATATTGTAAAT
26504123 ATACATCTTTCTCTATTCTTCTATATCTTGTTGTTTTTAAAATTGCTAAGT
65 ATACATCTTTCTCTATTCTTCTATATCTTGTTGTTTTTAAAATTGCTAAGT
26504174 AAGTAAAATTTTATATCATTTATGTGTATG-T-TAAATATATATTTTAGAAAAATATTGTAAATA
1 AAGTAAAATTTTATATCATTTATGTGTATGTTATAAATATATATTTTAGAAAAATATTGTAAATA
26504237 TACATCTTTCTCTATTCTTCTATATCTTGTTGTTTTTAAAATTGCTAAGT
66 TACATCTTTCTCTATTCTTCTATATCTTGTTGTTTTTAAAATTGCTAAGT
26504287 AAG
1 AAG
26504290 ATGGCAATAA
Statistics
Matches: 116, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
113 85 0.73
114 1 0.01
116 30 0.26
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.48
Consensus pattern (115 bp):
AAGTAAAATTTTATATCATTTATGTGTATGTTATAAATATATATTTTAGAAAAATATTGTAAATA
TACATCTTTCTCTATTCTTCTATATCTTGTTGTTTTTAAAATTGCTAAGT
Found at i:26509971 original size:38 final size:38
Alignment explanation
Indices: 26509920--26510009 Score: 146
Period size: 38 Copynumber: 2.4 Consensus size: 38
26509910 TAATTGTTGT
*
26509920 ACATTTATGGTATGCTCACACACTTCGCTAAAATTTGC
1 ACATTTATGGTATGCTCACACACTTCGCTAAAATTTAC
* *
26509958 ACATTTATGGTATGCTCATACACTTTGCTAAAATTTAC
1 ACATTTATGGTATGCTCACACACTTCGCTAAAATTTAC
26509996 ACATTTAT-GTATGC
1 ACATTTATGGTATGC
26510010 AAATAAAATA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
37 6 0.12
38 43 0.88
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (38 bp):
ACATTTATGGTATGCTCACACACTTCGCTAAAATTTAC
Found at i:26513217 original size:26 final size:26
Alignment explanation
Indices: 26513181--26513233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26513171 TGGATAAAAA
26513181 AGGGGTTGCTAAGTGCAAATTCCCCG
1 AGGGGTTGCTAAGTGCAAATTCCCCG
**
26513207 AGGGGTTGCTAAGTGCCGATTCCCCG
1 AGGGGTTGCTAAGTGCAAATTCCCCG
26513233 A
1 A
26513234 ATTATTGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.23
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCAAATTCCCCG
Found at i:26513270 original size:42 final size:42
Alignment explanation
Indices: 26513210--26513429 Score: 181
Period size: 42 Copynumber: 5.4 Consensus size: 42
26513200 TTCCCCGAGG
* * * *
26513210 GGTTGCTAAGTGCCGATTCCCCGAATTATTGACTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGAATATAAAGGT
* *
26513252 GGTTGCTAAGTGCTGATTCCACCGTATCT-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGAATAT-AAAGGT
* * * *
26513295 GGTTGCTATGTGCTGATTCCCCGTATGACTGAATATAAATGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGAATATAAAGGT
* *
26513337 GGTTGCTAAGTGCTGATT---C-TA-T-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGAATAT-AAAGGT
* * * * *
26513373 GGTTGCTATGTGTTGATTCCCCGTATCACTGAAT-TTAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGAATATAAAGGT
26513414 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
26513430 ATCCATCGAG
Statistics
Matches: 141, Mismatches: 24, Indels: 27
0.73 0.12 0.14
Matches are distributed among these distances:
36 21 0.15
37 4 0.03
38 2 0.01
39 2 0.01
40 6 0.04
41 19 0.13
42 51 0.36
43 30 0.21
44 6 0.04
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATTATTGAATATAAAGGT
Found at i:26513350 original size:85 final size:80
Alignment explanation
Indices: 26513207--26513434 Score: 282
Period size: 85 Copynumber: 2.8 Consensus size: 80
26513197 AAATTCCCCG
* * * * * *
26513207 AGGGGTTGCTAAGTGCCGATTCCCCGAATTATTGACTCTAAAGGTGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
26513272 ACCGTATCTTTGATTGTGAA
65 A-C-TA--TTTGATTGTGAA
* *
26513292 AGGGGTTGCTATGTGCTGATTCCCCGTATGACTGAATATAAATGTGGTTGCTAAGTGCTGATT--
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
26513355 -CTATTTGATTGTGAA
65 ACTATTTGATTGTGAA
* * *
26513370 AGGGGTTGCTATGTGTTGATTCCCCGTATCACTGAATTTAAGGTGGTTGCTAAGTGCTGAATCCA
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
26513435 TCGAGTAATG
Statistics
Matches: 127, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
77 22 0.17
78 47 0.37
80 2 0.02
81 1 0.01
85 55 0.43
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (80 bp):
AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
CTATTTGATTGTGAA
Found at i:26532944 original size:25 final size:25
Alignment explanation
Indices: 26532916--26532991 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
26532906 TAGCTACGTT
26532916 CTGACCCACAGCTCGTGTGAGCATA
1 CTGACCCACAGCTCGTGTGAGCATA
** * * *
26532941 CTGACTTATAGATCGTGAGAGCATA
1 CTGACCCACAGCTCGTGTGAGCATA
* * *
26532966 CCGATCCACAGCTCGAGTGAGCATA
1 CTGACCCACAGCTCGTGTGAGCATA
26532991 C
1 C
26532992 CAATTCACAG
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (25 bp):
CTGACCCACAGCTCGTGTGAGCATA
Found at i:26532992 original size:25 final size:25
Alignment explanation
Indices: 26532959--26533016 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
26532949 TAGATCGTGA
*
26532959 GAGCATACCGATCCACAGCTCG-AGT
1 GAGCATACCAATCCACAGCTCGTA-T
* *
26532984 GAGCATACCAATTCACAGTTCGTAT
1 GAGCATACCAATCCACAGCTCGTAT
26533009 GAGCATAC
1 GAGCATAC
26533017 ATGTACATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (25 bp):
GAGCATACCAATCCACAGCTCGTAT
Found at i:26537153 original size:22 final size:22
Alignment explanation
Indices: 26537128--26537170 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26537118 TTATGATGAT
*
26537128 TGATATGT-TGGGATTGATATTC
1 TGATATGTATGCGATT-ATATTC
26537150 TGATATGTATGCGATTATATT
1 TGATATGTATGCGATTATATT
26537171 TGTGATGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.26, C:0.05, G:0.23, T:0.47
Consensus pattern (22 bp):
TGATATGTATGCGATTATATTC
Found at i:26545071 original size:993 final size:992
Alignment explanation
Indices: 26543145--26545119 Score: 2938
Period size: 993 Copynumber: 2.0 Consensus size: 992
26543135 CCCGGGGCTG
* * **
26543145 TTATCTCTAACACTACCCACGCTCGTTATAGATGTAGCCTGAGGCTTTGGACTTGAACGTCGGTT
1 TTATCTCTAACACTACCCACGCTCGTTACAGATGTAGCATGAGGCTTTGGACTTGAACGTCAATT
* *
26543210 ACCTCTGTCTCTACTGAAATACCCCAATAAAAATGTGGAATGGTTGTGATGTTCTTTTGGTCTCT
66 ACCTCTATCTCTACTGAAATACCCCAATAAAAATATGGAATGGTTGTGATGTTCTTTTGGTCTCT
* *
26543275 TCGAAAATGATTGATATGACTTCCCAGTCAACCTCTTTCTCGAGTCTCTAGCTTCAAAATCAGCA
131 TCGAAAATGACTAATATGACTTCCCAGTCAACCTCTTTCTCGAGTCTCTAGCTTCAAAATCAGCA
* *
26543340 TGTATTTTTTCTTTACTAAGCTTCTCGGCTTTATGTGCTCAATCAACTAAGACAACAAATTCTTT
196 TGTATTTTCTCTTTACTAAGCTCCTCGGCTTTATGTGCTCAATCAACTAAGACAACAAATTCTTT
26543405 CAGCTCAAGAATTCTGACTAGAAGCTTTATATCTTCATTTAACCCTTCCTCGAATCTTTTACAAA
261 CAGCTCAAGAATTCTGACTAGAAGCTTTATATCTTCATTTAACCCTTCCTCGAATCTTTTACAAA
* * * * *
26543470 TGGCTGTCTTGGTTGGAATACATTCCTGAGCATTTTGATCAGTCTGGCAAACTCTGATTCATACT
326 TGGCTGTCTCGATTAGAATACATTCCTGAGCATTTTGATCAATCTGGCAAACTCTCATTCATACT
*
26543535 CTAACACAGACATACGACCCTGCTCGAGCTCAAGAAATTCTTTACGTTTCTAATCCAGAAATCTC
391 CTAACACAAACATACGACCCTGCTCGAGCTCAAGAAATTCTTTACGTTTCTAATCCAGAAATCTC
** ** * ** *
26543600 TGACTAATATATTTATTTTGGAACTCAATTTGGAAGAATTCCCAAGTTATATGCTCTTTTGGGAC
456 TGACTAATATATTTATTTCAGAACTCAATTTGGAAGAATTCCCAAGTTATACACTCTCTCAGCAC
** * *
26543665 GACTAAAATGAACATGTTCCACCACTGGTAAGCTGAGTCTTTCAACAAAGGTACGATACATTTAA
521 GACTAAAAACAACATGTTCCACCACTGGTAAGCTGAGTCTTTCAACAAAGGTACGACACACTTAA
* * ** *
26543730 CACATTTAGCTGGTGAATAAGATAGTTCGTTGAAAACCCTGATTATGTTCTCTAACTAGAATTCT
586 CACATTCAGCTGGTGAACAAGATAGTTCGTCAAAAACCCTAATTATGTTCTCTAACTAGAATTCT
* * *
26543795 GCTATTTTAGGATCATCTTCAGCAGTGGCTCTGAATTCTTCAGCCTCGTATTTACGAATCTTATC
651 GCTATATCAGGATCATCTTCAGCAGTGGCTCTAAATTCTTCAGCCTCGTATTTACGAATCTTATC
** *
26543860 AACAGGCGGCTTATTAACTCGTAAAGGTTCCAAACCTTGAGGGATAACGTGGAGGGATTCAGGAA
716 AACAGGCGGCTTATTAACTCGTAAAGGTTCCAAACCTTGAGAAATAACGTGGAGCGATTCAGGAA
* * *
26543925 TAAGATGGGGTGAAGGTTGTTGAGCAGTTGAGTTCGTCCTTACGAACCCAGTAAACCATTCGCTC
781 CAAGATGGGGTGAAGGTTGTTGAGCAGTTGAGTTCATCCGTACGAACCCAGTAAACCATTCGCTC
* * *
26543990 ATCATTTCAAAGAAGGTTTCCTTAGCTTTTCCTCCTCAGTCCTCAGATATGGGCCTTGTATCGCT
846 ATCATCTCAAAGAAGGTTTCCTTAGCTTTTCCTCCTCAGTCCTCAGATATGGGCCCTGTACCGCT
* * * * * *
26544055 CGTCGATCGTTACTGTAAACTTCATTAAAGTCAGCTCGATTGGATTTCATTGTTATAAGAAAACA
911 CGACGAGCATTACTCTAAACTTCATCAAAGTCAGCTCGATTGGATGTCATTGTTATAAGAAAACA
26544120 TGTTTTACTCGAGCCTC
976 TGTTTTACTCGAGCCTC
* * *
26544137 TTATCTCTAACACTAGCCATGCTTGTTACAGATGTAGCATGAGGCTTTGGACTTGAACGTCAATT
1 TTATCTCTAACACTACCCACGCTCGTTACAGATGTAGCATGAGGCTTTGGACTTGAACGTCAATT
* * * * * * *
26544202 GCCTCTATCTTTACTGGAATACCCCACTGAAACTATGGAATGGTTGTGATTTTCTTTTGGTCTCT
66 ACCTCTATCTCTACTGAAATACCCCAATAAAAATATGGAATGGTTGTGATGTTCTTTTGGTCTCT
* * *
26544267 TCGACAATGACTAATATGACTTCCCAGTCGACCTCTTTCTCGAGTCTGTAGCTTCAAAATCAGCA
131 TCGAAAATGACTAATATGACTTCCCAGTCAACCTCTTTCTCGAGTCTCTAGCTTCAAAATCAGCA
* * *
26544332 TGTCTTTTCTCTTTATTAAGCTCCTCGGCTTTATGTGC-CTGATCAACTAAGACAACAAATTCTT
196 TGTATTTTCTCTTTACTAAGCTCCTCGGCTTTATGTGCTC-AATCAACTAAGACAACAAATTCTT
*
26544396 TCAGCTCAAGAATTCTGACTAGAAGCTTTATATCTTCATTTAATCCTTCCTCGAATCTTTTACAA
260 TCAGCTCAAGAATTCTGACTAGAAGCTTTATATCTTCATTTAACCCTTCCTCGAATCTTTTACAA
* ** *
26544461 ATGGCTGTCTCGATTAGATTGGATTCCTGAGCATATTTGATTAATCTGAG-AAACTCTCATTCAT
325 ATGGCTGTCTCGATTAGAATACATTCCTGAGCAT-TTTGATCAATCTG-GCAAACTCTCATTCAT
* * * * * * * *
26544525 ACTTTGACACAAATATACGACCCTGTTTGTGCTCAAGAAATTCTTTACGTTTCTGATCTAGAAAT
388 ACTCTAACACAAACATACGACCCTGCTCGAGCTCAAGAAATTCTTTACGTTTCTAATCCAGAAAT
* * *
26544590 CTTTGACTAATATATTTATTTCAGAACTCAGTTTGGAAGAATTCCCAGGTTATACACTCTCTCAG
453 CTCTGACTAATATATTTATTTCAGAACTCAATTTGGAAGAATTCCCAAGTTATACACTCTCTCAG
26544655 CACGACTAAAAACAACATGTTCCACCACTGGTAAGCTGAGTCTTTCAACAAAGGTACCG-CACAC
518 CACGACTAAAAACAACATGTTCCACCACTGGTAAGCTGAGTCTTTCAACAAAGGTA-CGACACAC
*
26544719 TTAACACATTCAGCTGGTGAACAAGATAGTTCGTCAAAAACCCTAATTGTGTTCTCTAACTAGAA
582 TTAACACATTCAGCTGGTGAACAAGATAGTTCGTCAAAAACCCTAATTATGTTCTCTAACTAGAA
* * *
26544784 TTCTGCTCTATCAGGATCATCTTCAGTAGTGGCTCTAAATTCTTCAGCGTCGTATTTACGAATCT
647 TTCTGCTATATCAGGATCATCTTCAGCAGTGGCTCTAAATTCTTCAGCCTCGTATTTACGAATCT
* *
26544849 TATCAATAGGCGGCTTATTAACTCGTAAAGGTTCCAAACCTTGAGAAATAACG-GAGAGCGATTG
712 TATCAACAGGCGGCTTATTAACTCGTAAAGGTTCCAAACCTTGAGAAATAACGTG-GAGCGATTC
* * * * *
26544913 GGGAACAAGA-GGTGGTGAAGGTTGTTGAGCTGTT-AGGTTCATTCGTACGAACTCTGTAAACCA
776 AGGAACAAGATGG-GGTGAAGGTTGTTGAGCAGTTGA-GTTCATCCGTACGAACCCAGTAAACCA
* *
26544976 TTTGCTCATCATCTCGAAGAAGGTTTCCTTAGCTTTTCCT-CTCCAGTCCTCAGATATGGGCCCT
839 TTCGCTCATCATCTCAAAGAAGGTTTCCTTAGCTTTTCCTCCT-CAGTCCTCAGATATGGGCCCT
* * *
26545040 GTACCGCTCGACGAGCATTACTCTCAACTTCATCAGAGTCAGCTCGGTTGGATGTCATTGTTATA
903 GTACCGCTCGACGAGCATTACTCTAAACTTCATCAAAGTCAGCTCGATTGGATGTCATTGTTATA
26545105 AGAAAACATGTTTTA
968 AGAAAACATGTTTTA
26545120 AAACGGTCAG
Statistics
Matches: 876, Mismatches: 99, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
991 1 0.00
992 329 0.38
993 543 0.62
994 3 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (992 bp):
TTATCTCTAACACTACCCACGCTCGTTACAGATGTAGCATGAGGCTTTGGACTTGAACGTCAATT
ACCTCTATCTCTACTGAAATACCCCAATAAAAATATGGAATGGTTGTGATGTTCTTTTGGTCTCT
TCGAAAATGACTAATATGACTTCCCAGTCAACCTCTTTCTCGAGTCTCTAGCTTCAAAATCAGCA
TGTATTTTCTCTTTACTAAGCTCCTCGGCTTTATGTGCTCAATCAACTAAGACAACAAATTCTTT
CAGCTCAAGAATTCTGACTAGAAGCTTTATATCTTCATTTAACCCTTCCTCGAATCTTTTACAAA
TGGCTGTCTCGATTAGAATACATTCCTGAGCATTTTGATCAATCTGGCAAACTCTCATTCATACT
CTAACACAAACATACGACCCTGCTCGAGCTCAAGAAATTCTTTACGTTTCTAATCCAGAAATCTC
TGACTAATATATTTATTTCAGAACTCAATTTGGAAGAATTCCCAAGTTATACACTCTCTCAGCAC
GACTAAAAACAACATGTTCCACCACTGGTAAGCTGAGTCTTTCAACAAAGGTACGACACACTTAA
CACATTCAGCTGGTGAACAAGATAGTTCGTCAAAAACCCTAATTATGTTCTCTAACTAGAATTCT
GCTATATCAGGATCATCTTCAGCAGTGGCTCTAAATTCTTCAGCCTCGTATTTACGAATCTTATC
AACAGGCGGCTTATTAACTCGTAAAGGTTCCAAACCTTGAGAAATAACGTGGAGCGATTCAGGAA
CAAGATGGGGTGAAGGTTGTTGAGCAGTTGAGTTCATCCGTACGAACCCAGTAAACCATTCGCTC
ATCATCTCAAAGAAGGTTTCCTTAGCTTTTCCTCCTCAGTCCTCAGATATGGGCCCTGTACCGCT
CGACGAGCATTACTCTAAACTTCATCAAAGTCAGCTCGATTGGATGTCATTGTTATAAGAAAACA
TGTTTTACTCGAGCCTC
Found at i:26552339 original size:2 final size:2
Alignment explanation
Indices: 26552332--26552363 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
26552322 TTAATAAAAC
26552332 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26552364 GACAAGCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26554685 original size:61 final size:63
Alignment explanation
Indices: 26554580--26554703 Score: 180
Period size: 62 Copynumber: 2.0 Consensus size: 63
26554570 ATATCTCTGC
* *
26554580 TGAGCATATATGAGACACATGTGGAGATTCAAAATCATTGATTACTGAGC-TGCCTAAGACGT
1 TGAGCATATATGAGACACATGTGGAGATTCAAAATAATTAATTACTGAGCTTGCCTAAGACGT
* ** *
26554642 TGAGTATATATGAGATGCATGT-GAGATTCAAAATAATTAATTACTGAGCTTTCCTAAGACGT
1 TGAGCATATATGAGACACATGTGGAGATTCAAAATAATTAATTACTGAGCTTGCCTAAGACGT
26554704 CAAATCCTAG
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
61 25 0.45
62 30 0.55
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.31
Consensus pattern (63 bp):
TGAGCATATATGAGACACATGTGGAGATTCAAAATAATTAATTACTGAGCTTGCCTAAGACGT
Done.