Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 81 of 136
Found at i:26563020 original size:25 final size:25
Alignment explanation
Indices: 26562992--26563138 Score: 122
Period size: 25 Copynumber: 5.9 Consensus size: 25
26562982 ATAAGCCATG
*
26562992 AATCGGTATGCTCTCACGAGCTGCA
1 AATCGGTAAGCTCTCACGAGCTGCA
**
26563017 AATCGGTAAGCTCAT-ACGAGCTGGG
1 AATCGGTAAGCTC-TCACGAGCTGCA
** * *
26563042 AATTAGTAAGCTCTCATGAGCTACA
1 AATCGGTAAGCTCTCACGAGCTGCA
*
26563067 AATCGGTAAGCTCAT-ACGAGTTG-A
1 AATCGGTAAGCTC-TCACGAGCTGCA
* *
26563091 GAATCAGTAAGCTCTCACAAGCTGCA
1 -AATCGGTAAGCTCTCACGAGCTGCA
**
26563117 AATCAATAAGCTCAT-ACGAGCT
1 AATCGGTAAGCTC-TCACGAGCT
26563139 ATGGTGTGTT
Statistics
Matches: 96, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
24 3 0.03
25 89 0.93
26 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (25 bp):
AATCGGTAAGCTCTCACGAGCTGCA
Found at i:26563063 original size:50 final size:50
Alignment explanation
Indices: 26562991--26563138 Score: 206
Period size: 50 Copynumber: 3.0 Consensus size: 50
26562981 TATAAGCCAT
* * *
26562991 GAATCGGTATGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTGG
1 GAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTGA
* * * *
26563041 GAATTAGTAAGCTCTCATGAGCTACAAATCGGTAAGCTCATACGAGTTGA
1 GAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTGA
* **
26563091 GAATCAGTAAGCTCTCACAAGCTGCAAATCAATAAGCTCATACGAGCT
1 GAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCT
26563139 ATGGTGTGTT
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 84 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.23
Consensus pattern (50 bp):
GAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTGA
Found at i:26572263 original size:20 final size:20
Alignment explanation
Indices: 26572240--26572305 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
26572230 GGGCAGATAT
26572240 GTACAATCAGGGGTACCAAA
1 GTACAATCAGGGGTACCAAA
* * ** *
26572260 GTACAAACAGGGGCACGTAT
1 GTACAATCAGGGGTACCAAA
* * *
26572280 GTTCAATTAGGGGTACCGAA
1 GTACAATCAGGGGTACCAAA
26572300 GTACAA
1 GTACAA
26572306 ATAGGGGCGC
Statistics
Matches: 33, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.18
Consensus pattern (20 bp):
GTACAATCAGGGGTACCAAA
Found at i:26572310 original size:20 final size:20
Alignment explanation
Indices: 26572248--26572312 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
26572238 ATGTACAATC
* *
26572248 AGGGGTACCAAAGTACAAAC
1 AGGGGTACCGAAGTACAAAT
* * * *
26572268 AGGGGCA-CGTATGTTCAATT
1 AGGGGTACCG-AAGTACAAAT
26572288 AGGGGTACCGAAGTACAAAT
1 AGGGGTACCGAAGTACAAAT
26572308 AGGGG
1 AGGGG
26572313 CGCGTATGTG
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
19 1 0.03
20 30 0.91
21 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.32, T:0.17
Consensus pattern (20 bp):
AGGGGTACCGAAGTACAAAT
Found at i:26572321 original size:40 final size:40
Alignment explanation
Indices: 26572170--26572313 Score: 171
Period size: 40 Copynumber: 3.6 Consensus size: 40
26572160 ATACGTTCAA
* * *
26572170 GGGTATCGAAGTACAAACAGGGGCACATACGTGCAATCAG
1 GGGTACCGAAGTACAAACAGGGGCACATATGTACAATCAG
** * * *
26572210 GGGTATTGAAATACTAACAGGGGCAGATATGTACAATCAG
1 GGGTACCGAAGTACAAACAGGGGCACATATGTACAATCAG
* * * *
26572250 GGGTACCAAAGTACAAACAGGGGCACGTATGTTCAATTAG
1 GGGTACCGAAGTACAAACAGGGGCACATATGTACAATCAG
*
26572290 GGGTACCGAAGTACAAATAGGGGC
1 GGGTACCGAAGTACAAACAGGGGC
26572314 GCGTATGTGC
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (40 bp):
GGGTACCGAAGTACAAACAGGGGCACATATGTACAATCAG
Found at i:26581104 original size:24 final size:24
Alignment explanation
Indices: 26581063--26581130 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
26581053 ATATGCTCTC
* *
26581063 ACGAGCTATAAATTAGTAAGCTCAT
1 ACGAGCT-GAAATCAGTAAGCTCAT
*
26581088 ACGAGTTGAAATCAGTAAGCTCAT
1 ACGAGCTGAAATCAGTAAGCTCAT
*
26581112 ACGAGCTGAGAATCGGTAA
1 ACGAGCTGA-AATCAGTAA
26581131 TCCCTAATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 23 0.62
25 14 0.38
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (24 bp):
ACGAGCTGAAATCAGTAAGCTCAT
Found at i:26585677 original size:25 final size:25
Alignment explanation
Indices: 26585649--26585699 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
26585639 CAGAATAATA
* * * *
26585649 ACGCAGCAGAGCTGTCAGTAATAGT
1 ACGCAACAAAGCTGCCAGTAACAGT
26585674 ACGCAACAAAGCTGCCAGTAACAGT
1 ACGCAACAAAGCTGCCAGTAACAGT
26585699 A
1 A
26585700 TATGTGGCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.16
Consensus pattern (25 bp):
ACGCAACAAAGCTGCCAGTAACAGT
Found at i:26585885 original size:27 final size:27
Alignment explanation
Indices: 26585826--26586157 Score: 338
Period size: 27 Copynumber: 12.4 Consensus size: 27
26585816 AGGGGTATAA
*
26585826 CAGTCATTTTACCCTTTG-GGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
26585852 CAGTCATTTTACCCATCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * *
26585879 CAATCATTTTACCCATCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
26585906 CAGTCATTTTACCCTTCGAGAGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
26585933 C-GATCATTTTACCCTTTGAGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
*
26585960 -TGATCATTTTACCCTTCGAGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
* *
26585987 TAGTCATTTTACCTTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
26586014 C-GATCATTTTATCTTTCG-GGGTTATTT
1 CAG-TCATTTTACCCTTCGAGGG-TATTT
**
26586041 TGGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * **
26586068 CAGTTATTTTA-ACTTTTAGGGGTATTT
1 CAGTCATTTTACCCTTCGA-GGGTATTT
**
26586095 TGGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * *
26586122 C-GATCGTTTTATCCTTAG-GGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
26586148 CAGTCATTTT
1 CAGTCATTTT
26586158 CCCATGAATT
Statistics
Matches: 260, Mismatches: 34, Indels: 24
0.82 0.11 0.08
Matches are distributed among these distances:
26 41 0.16
27 210 0.81
28 9 0.03
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.45
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:26585956 original size:81 final size:81
Alignment explanation
Indices: 26585817--26586157 Score: 377
Period size: 81 Copynumber: 4.2 Consensus size: 81
26585807 TCAACTCCTA
** * * *
26585817 GGGGTATAACAGTCATTTTACCCTTTG-GGGTATTTC-AGTCATTTTACCCATCGGGGGTATTTC
1 GGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTTCGAGGGTATTTC
* *
26585880 AATCATTTTACCCATCG
65 GATCATTTTACCCTTCG
* * *
26585897 GGGGTATTTCAGTCATTTTACCCTTCGAGAGTATTTCGATCATTTTACCCTTTGAGGGTATTTTG
1 GGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCG
26585962 ATCATTTTACCCTTCG
66 ATCATTTTACCCTTCG
* * * * * *
26585978 AGGGTATTTTAGTCATTTTACCTTTCGAGGGTATTTCGATCATTTTATCTTTCG-GGGTTATTTT
1 GGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGG-TATTTC
*
26586042 GGTCATTTTACCCTTCG
65 GATCATTTTACCCTTCG
* * * ** * *
26586059 AGGGTATTTCAGTTATTTTA-ACTTTTAGGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTC
1 GGGGTATTTCAGTCATTTTACCCTTCGA-GGGTATTTCGATCATTTTACCCTTCGAGGGTATTTC
* * *
26586123 GATCGTTTTATCCTT-A
65 GATCATTTTACCCTTCG
26586139 GGGGTATTTCAGTCATTTT
1 GGGGTATTTCAGTCATTTT
26586158 CCCATGAATT
Statistics
Matches: 221, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
80 47 0.21
81 170 0.77
82 4 0.02
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.44
Consensus pattern (81 bp):
GGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCG
ATCATTTTACCCTTCG
Found at i:26598103 original size:24 final size:25
Alignment explanation
Indices: 26598044--26598127 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
26598034 TTTGAGCTAT
* *
26598044 GAATCGGTAAGCTTATACGAGCTGA
1 GAATCGATAAGCTCATACGAGCTGA
*
26598069 GAATCGGTAAGCTC-TCACGAGCT-A
1 GAATCGATAAGCTCAT-ACGAGCTGA
*
26598093 AAATCGATAAGCTCATACGAGCTGA
1 GAATCGATAAGCTCATACGAGCTGA
26598118 GAATCGATAA
1 GAATCGATAA
26598128 TCCCTAATGA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
24 21 0.40
25 31 0.60
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (25 bp):
GAATCGATAAGCTCATACGAGCTGA
Found at i:26599050 original size:69 final size:69
Alignment explanation
Indices: 26598966--26599103 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
26598956 TTTTGTTTTA
26598966 TTTTAATTATTATTTATTTACTTAATTACCTAATTAACCTTTATAAACTTTAACAATTACATAAA
1 TTTTAATTATTATTTATTTACTTAATTACCTAATTAACCTTTATAAACTTTAACAATTACATAAA
26599031 ATGC
66 ATGC
26599035 TTTTAATTATTATTTATTTACTTAATTACCTAATTAACCTTTATAAACTTTAACAATTACATAAA
1 TTTTAATTATTATTTATTTACTTAATTACCTAATTAACCTTTATAAACTTTAACAATTACATAAA
26599100 ATGC
66 ATGC
26599104 CAAGCCATTA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.39, C:0.13, G:0.01, T:0.46
Consensus pattern (69 bp):
TTTTAATTATTATTTATTTACTTAATTACCTAATTAACCTTTATAAACTTTAACAATTACATAAA
ATGC
Found at i:26604513 original size:28 final size:28
Alignment explanation
Indices: 26604469--26604526 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
26604459 CAATATCAAT
* * *
26604469 ATAGTGTGGGCCTTAGCCCATTACAGTA
1 ATAGTGTAGGCCCTAGCCCAATACAGTA
26604497 ATAGTGTAGGCCCTAGCCCAATACAGTA
1 ATAGTGTAGGCCCTAGCCCAATACAGTA
26604525 AT
1 AT
26604527 CAGAGTACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (28 bp):
ATAGTGTAGGCCCTAGCCCAATACAGTA
Found at i:26604663 original size:26 final size:26
Alignment explanation
Indices: 26604634--26604693 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
26604624 ATATCGCAAT
* *
26604634 AAAGCTGCCAGCAATAATAACGTAGC
1 AAAGCTGCCAGCAACAATAACGCAGC
* * *
26604660 AAAGCTGCCAGTAACAGTAATGCAGC
1 AAAGCTGCCAGCAACAATAACGCAGC
26604686 AAAGCTGC
1 AAAGCTGC
26604694 TAGTAACAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.15
Consensus pattern (26 bp):
AAAGCTGCCAGCAACAATAACGCAGC
Found at i:26604698 original size:26 final size:27
Alignment explanation
Indices: 26604657--26604732 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 27
26604647 ATAATAACGT
*
26604657 AGCAAAGCTGCCAGTAACAGTA-ATGC
1 AGCAAAGCTGCTAGTAACAGTATATGC
*
26604683 AGCAAAGCTGCTAGTAACAGTATATGT
1 AGCAAAGCTGCTAGTAACAGTATATGC
* **
26604710 GGCAAAGCCACTAGT-ACAGTATA
1 AGCAAAGCTGCTAGTAACAGTATA
26604733 CTTCACCTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 29 0.66
27 15 0.34
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (27 bp):
AGCAAAGCTGCTAGTAACAGTATATGC
Found at i:26604916 original size:27 final size:26
Alignment explanation
Indices: 26604886--26605105 Score: 208
Period size: 27 Copynumber: 8.2 Consensus size: 26
26604876 TATAACAGTT
*
26604886 ATTTTACCCTATAGGGGTATTTTGATC
1 ATTTTACCCT-TAGGGGTATTTTGGTC
* *
26604913 ATTTTACCCTTCGGGGGTATTTTGGTT
1 ATTTTACCCTT-AGGGGTATTTTGGTC
**
26604940 ATTTTACCCATT-GGCGGTATTTTAATC
1 ATTTTACCC-TTAGG-GGTATTTTGGTC
*
26604967 ATTTTACCCTTCGAGGGTATTTTGGTC
1 ATTTTACCCTTAG-GGGTATTTTGGTC
* * * *
26604994 ATTTTACCCTTCGAAGCTATTTCGGTC
1 ATTTTACCCTTAG-GGGTATTTTGGTC
* *
26605021 ATTTTACCTTTTGAGGGTATTTTGGTC
1 ATTTTACCCTTAG-GGGTATTTTGGTC
* *
26605048 ATTTTACTCTTTAAGGGTATTTTGGTC
1 ATTTTAC-CCTTAGGGGTATTTTGGTC
* *
26605075 ATTTTACCCTTCGAGGGTATTTCGGTC
1 ATTTTACCCTTAG-GGGTATTTTGGTC
26605102 ATTT
1 ATTT
26605106 GTGGCCCATT
Statistics
Matches: 164, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
26 8 0.05
27 149 0.91
28 7 0.04
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (26 bp):
ATTTTACCCTTAGGGGTATTTTGGTC
Found at i:26604959 original size:54 final size:54
Alignment explanation
Indices: 26604886--26605105 Score: 257
Period size: 54 Copynumber: 4.1 Consensus size: 54
26604876 TATAACAGTT
* *
26604886 ATTTTACCC-TATAGGGGTATTTTGATCATTTTACCCTTCGGGGGTATTTTGGTT
1 ATTTTACCCAT-TAGGGGTATTTTGATCATTTTACCCTTCGAGGGTATTTTGGTC
*
26604940 ATTTTACCCATT-GGCGGTATTTTAATCATTTTACCCTTCGAGGGTATTTTGGTC
1 ATTTTACCCATTAGG-GGTATTTTGATCATTTTACCCTTCGAGGGTATTTTGGTC
* * * * * * *
26604994 ATTTTACCC-TTCGAAGCTATTTCGGTCATTTTACCTTTTGAGGGTATTTTGGTC
1 ATTTTACCCATTAG-GGGTATTTTGATCATTTTACCCTTCGAGGGTATTTTGGTC
* * * * *
26605048 ATTTTACTCTTTAAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCGGTC
1 ATTTTACCCATTAGGGGTATTTTGATCATTTTACCCTTCGAGGGTATTTTGGTC
26605102 ATTT
1 ATTT
26605106 GTGGCCCATT
Statistics
Matches: 142, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
53 4 0.03
54 135 0.95
55 3 0.02
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (54 bp):
ATTTTACCCATTAGGGGTATTTTGATCATTTTACCCTTCGAGGGTATTTTGGTC
Found at i:26604996 original size:81 final size:81
Alignment explanation
Indices: 26604886--26605105 Score: 284
Period size: 81 Copynumber: 2.7 Consensus size: 81
26604876 TATAACAGTT
* * * *
26604886 ATTTTACCCTATAG-GGGTATTTTGATCATTTTACCCTTCGGGGGTATTTTGGTTATTTTACCCA
1 ATTTTACCCT-TAGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCA
26604950 TTG-GCGGTATTTTAATC
65 TTGAG-GGTATTTTAATC
* * * **
26604967 ATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAAGCTATTTCGGTCATTTTACCTTT
1 ATTTTACCCTTAGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCAT
**
26605032 TGAGGGTATTTTGGTC
66 TGAGGGTATTTTAATC
*
26605048 ATTTTACTCTTTA-AGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTT
1 ATTTTAC-CCTTAGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTT
26605106 GTGGCCCATT
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 2 0.02
81 115 0.95
82 4 0.03
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (81 bp):
ATTTTACCCTTAGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCAT
TGAGGGTATTTTAATC
Found at i:26621624 original size:21 final size:21
Alignment explanation
Indices: 26621585--26621626 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26621575 AACCCTATAC
* *
26621585 AAGAGTTTTATGATGGATTAT
1 AAGAGTTTGATGATAGATTAT
*
26621606 AAGAGTTTGATGTTAGATTAT
1 AAGAGTTTGATGATAGATTAT
26621627 TATGTTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (21 bp):
AAGAGTTTGATGATAGATTAT
Found at i:26636353 original size:40 final size:40
Alignment explanation
Indices: 26636307--26636483 Score: 231
Period size: 40 Copynumber: 4.6 Consensus size: 40
26636297 CGGCACTAAA
* * * *
26636307 GTGCAATCAAGGGTACTGAAGTACAAATAGGGGCACGTAT
1 GTGCAATCAGGGGTACCGAAGTACGAACAGGGGCACGTAT
* * *
26636347 GTGCAATTAGGAGTACCAAAGTACGAACA---G---GTAT
1 GTGCAATCAGGGGTACCGAAGTACGAACAGGGGCACGTAT
*
26636381 GTGCAATCAGGGGTACCGAAGTACGAACAGGGGCACATAT
1 GTGCAATCAGGGGTACCGAAGTACGAACAGGGGCACGTAT
*
26636421 GTGCAATCAGGGGTACCAAAGTACGAACAGGGGCACGTAT
1 GTGCAATCAGGGGTACCGAAGTACGAACAGGGGCACGTAT
26636461 GTGCAATCAGGGGTACCGAAGTA
1 GTGCAATCAGGGGTACCGAAGTA
26636484 TAATAATTTT
Statistics
Matches: 117, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
34 30 0.26
37 2 0.02
40 85 0.73
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.18
Consensus pattern (40 bp):
GTGCAATCAGGGGTACCGAAGTACGAACAGGGGCACGTAT
Found at i:26636413 original size:20 final size:20
Alignment explanation
Indices: 26636384--26636483 Score: 71
Period size: 20 Copynumber: 5.0 Consensus size: 20
26636374 CAGGTATGTG
26636384 CAATCAGGGGTACCGAAGTA
1 CAATCAGGGGTACCGAAGTA
* ** * *
26636404 CGAA-CAGGGGCACATATGTG
1 C-AATCAGGGGTACCGAAGTA
*
26636424 CAATCAGGGGTACCAAAGTA
1 CAATCAGGGGTACCGAAGTA
* * *
26636444 CGAA-CAGGGGCA-CGTATGTG
1 C-AATCAGGGGTACCG-AAGTA
26636464 CAATCAGGGGTACCGAAGTA
1 CAATCAGGGGTACCGAAGTA
26636484 TAATAATTTT
Statistics
Matches: 57, Mismatches: 17, Indels: 12
0.66 0.20 0.14
Matches are distributed among these distances:
19 5 0.09
20 46 0.81
21 6 0.11
ACGTcount: A:0.33, C:0.20, G:0.32, T:0.15
Consensus pattern (20 bp):
CAATCAGGGGTACCGAAGTA
Found at i:26636437 original size:74 final size:76
Alignment explanation
Indices: 26636307--26636483 Score: 241
Period size: 74 Copynumber: 2.3 Consensus size: 76
26636297 CGGCACTAAA
* * * * *
26636307 GTGCAATCAAGGGTACTGAAGTACAAATAGGGGCACGTATGTGCAATTAGGAGTACCAAAGTACG
1 GTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAATCAGGAGTACCAAAGTACG
26636372 AACA-G-GTAT
66 AACAGGCGTAT
* *
26636381 GTGCAATCAGGGGTACCGAAGTACGAACAGGGGCACATATGTGCAATCAGGGGTACCAAAGTACG
1 GTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAATCAGGAGTACCAAAGTACG
26636446 AACAGGGGCACGTAT
66 AACA--GG--CGTAT
26636461 GTGCAATCAGGGGTACCGAAGTA
1 GTGCAATCAGGGGTACCGAAGTA
26636484 TAATAATTTT
Statistics
Matches: 90, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
74 62 0.69
77 1 0.01
80 27 0.30
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.18
Consensus pattern (76 bp):
GTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAATCAGGAGTACCAAAGTACG
AACAGGCGTAT
Found at i:26670772 original size:598 final size:598
Alignment explanation
Indices: 26669637--26670832 Score: 2392
Period size: 598 Copynumber: 2.0 Consensus size: 598
26669627 TCAAAGGGTC
26669637 GGAAATGTCACCAGCAGAAATGAGATGCCTCAAACAAACATCATTGAGGTAGAATTATTCGATGT
1 GGAAATGTCACCAGCAGAAATGAGATGCCTCAAACAAACATCATTGAGGTAGAATTATTCGATGT
26669702 TTGGGGTATTGACTTTCTCAGTCCTTTCCCTCCGTCTTTTGGTCATAAGTACATATTAGTAGCAG
66 TTGGGGTATTGACTTTCTCAGTCCTTTCCCTCCGTCTTTTGGTCATAAGTACATATTAGTAGCAG
26669767 TAGACTATGTGTCTAAGTGGGTTGAGGCAGAGGCATATCCGACAAACGATGCTAAGGTTGTAATG
131 TAGACTATGTGTCTAAGTGGGTTGAGGCAGAGGCATATCCGACAAACGATGCTAAGGTTGTAATG
26669832 AAGTATGTTTAAATTTGTCATAAGTATGTTTAAATAAATTCTGTCTAGGAGATTGGAACTTAAGC
196 AAGTATGTTTAAATTTGTCATAAGTATGTTTAAATAAATTCTGTCTAGGAGATTGGAACTTAAGC
26669897 GAGACCACTTGTGATCTCTCCAATCTTTCTTGGGAATTGAATTTAACATAATTTCCCGAGAAATT
261 GAGACCACTTGTGATCTCTCCAATCTTTCTTGGGAATTGAATTTAACATAATTTCCCGAGAAATT
26669962 ATTCCCGAAATGACAAAATAAATTTTTATTATTTCAAATAAAACGGTCAATTTTGATCCAAGTTT
326 ATTCCCGAAATGACAAAATAAATTTTTATTATTTCAAATAAAACGGTCAATTTTGATCCAAGTTT
26670027 TATGTTGCAACTCAATTTTGAATTTTCATTTAAGTTTAGGAACTTAATTGAATTATTTTTAAAAA
391 TATGTTGCAACTCAATTTTGAATTTTCATTTAAGTTTAGGAACTTAATTGAATTATTTTTAAAAA
26670092 TTTGGTTGCTATTTTTTTAAATATTAAAAATTATATGCCTCTTTTTGTAAATATTTTCAAAGAGC
456 TTTGGTTGCTATTTTTTTAAATATTAAAAATTATATGCCTCTTTTTGTAAATATTTTCAAAGAGC
26670157 ATCTAGAATAAATGTTTTTAGTTCTATAAAAAAATGAAAAGATTATAATTATTAATATATAATTA
521 ATCTAGAATAAATGTTTTTAGTTCTATAAAAAAATGAAAAGATTATAATTATTAATATATAATTA
26670222 TATCCATTATAAT
586 TATCCATTATAAT
26670235 GGAAATGTCACCAGCAGAAATGAGATGCCTCAAACAAACATCATTGAGGTAGAATTATTCGATGT
1 GGAAATGTCACCAGCAGAAATGAGATGCCTCAAACAAACATCATTGAGGTAGAATTATTCGATGT
26670300 TTGGGGTATTGACTTTCTCAGTCCTTTCCCTCCGTCTTTTGGTCATAAGTACATATTAGTAGCAG
66 TTGGGGTATTGACTTTCTCAGTCCTTTCCCTCCGTCTTTTGGTCATAAGTACATATTAGTAGCAG
26670365 TAGACTATGTGTCTAAGTGGGTTGAGGCAGAGGCATATCCGACAAACGATGCTAAGGTTGTAATG
131 TAGACTATGTGTCTAAGTGGGTTGAGGCAGAGGCATATCCGACAAACGATGCTAAGGTTGTAATG
26670430 AAGTATGTTTAAATTTGTCATAAGTATGTTTAAATAAATTCTGTCTAGGAGATTGGAACTTAAGC
196 AAGTATGTTTAAATTTGTCATAAGTATGTTTAAATAAATTCTGTCTAGGAGATTGGAACTTAAGC
26670495 GAGACCACTTGTGATCTCTCCAATCTTTCTTGGGAATTGAATTTAACATAATTTCCCGAGAAATT
261 GAGACCACTTGTGATCTCTCCAATCTTTCTTGGGAATTGAATTTAACATAATTTCCCGAGAAATT
26670560 ATTCCCGAAATGACAAAATAAATTTTTATTATTTCAAATAAAACGGTCAATTTTGATCCAAGTTT
326 ATTCCCGAAATGACAAAATAAATTTTTATTATTTCAAATAAAACGGTCAATTTTGATCCAAGTTT
26670625 TATGTTGCAACTCAATTTTGAATTTTCATTTAAGTTTAGGAACTTAATTGAATTATTTTTAAAAA
391 TATGTTGCAACTCAATTTTGAATTTTCATTTAAGTTTAGGAACTTAATTGAATTATTTTTAAAAA
26670690 TTTGGTTGCTATTTTTTTAAATATTAAAAATTATATGCCTCTTTTTGTAAATATTTTCAAAGAGC
456 TTTGGTTGCTATTTTTTTAAATATTAAAAATTATATGCCTCTTTTTGTAAATATTTTCAAAGAGC
26670755 ATCTAGAATAAATGTTTTTAGTTCTATAAAAAAATGAAAAGATTATAATTATTAATATATAATTA
521 ATCTAGAATAAATGTTTTTAGTTCTATAAAAAAATGAAAAGATTATAATTATTAATATATAATTA
26670820 TATCCATTATAAT
586 TATCCATTATAAT
26670833 ATATATTAAT
Statistics
Matches: 598, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
598 598 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (598 bp):
GGAAATGTCACCAGCAGAAATGAGATGCCTCAAACAAACATCATTGAGGTAGAATTATTCGATGT
TTGGGGTATTGACTTTCTCAGTCCTTTCCCTCCGTCTTTTGGTCATAAGTACATATTAGTAGCAG
TAGACTATGTGTCTAAGTGGGTTGAGGCAGAGGCATATCCGACAAACGATGCTAAGGTTGTAATG
AAGTATGTTTAAATTTGTCATAAGTATGTTTAAATAAATTCTGTCTAGGAGATTGGAACTTAAGC
GAGACCACTTGTGATCTCTCCAATCTTTCTTGGGAATTGAATTTAACATAATTTCCCGAGAAATT
ATTCCCGAAATGACAAAATAAATTTTTATTATTTCAAATAAAACGGTCAATTTTGATCCAAGTTT
TATGTTGCAACTCAATTTTGAATTTTCATTTAAGTTTAGGAACTTAATTGAATTATTTTTAAAAA
TTTGGTTGCTATTTTTTTAAATATTAAAAATTATATGCCTCTTTTTGTAAATATTTTCAAAGAGC
ATCTAGAATAAATGTTTTTAGTTCTATAAAAAAATGAAAAGATTATAATTATTAATATATAATTA
TATCCATTATAAT
Found at i:26670844 original size:16 final size:15
Alignment explanation
Indices: 26670796--26670845 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
26670786 AAATGAAAAG
26670796 ATTATAA-T-TATTA
1 ATTATAATTATATTA
**
26670809 ATATATAATTATATCC
1 AT-TATAATTATATTA
26670825 ATTATAATATATATTA
1 ATTATAAT-TATATTA
26670841 ATTAT
1 ATTAT
26670846 TATCAGCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
13 2 0.07
14 5 0.17
15 7 0.24
16 15 0.52
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATAATTATATTA
Found at i:26672724 original size:16 final size:15
Alignment explanation
Indices: 26672676--26672725 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
26672666 AAATGAAAAG
26672676 ATTATAA-T-TATTA
1 ATTATAATTATATTA
**
26672689 ATATATAATTATATCC
1 AT-TATAATTATATTA
26672705 ATTATAATATATATTA
1 ATTATAAT-TATATTA
26672721 ATTAT
1 ATTAT
26672726 TATCAGCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
13 2 0.07
14 5 0.17
15 7 0.24
16 15 0.52
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATAATTATATTA
Found at i:26680992 original size:15 final size:15
Alignment explanation
Indices: 26680969--26681000 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26680959 CTCCACACTG
26680969 ACCAACACCTCTACC
1 ACCAACACCTCTACC
*
26680984 ACCATCACCTCTACC
1 ACCAACACCTCTACC
26680999 AC
1 AC
26681001 GGCCCCACCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.53, G:0.00, T:0.16
Consensus pattern (15 bp):
ACCAACACCTCTACC
Found at i:26682852 original size:45 final size:43
Alignment explanation
Indices: 26682788--26682937 Score: 133
Period size: 45 Copynumber: 3.4 Consensus size: 43
26682778 AATAAATGTG
* * * *
26682788 GTTGCCATGTGTTTATTTCACCGGATACCAATGGTTATATAGGTC
1 GTTGCTATGTGCTGATTTCACCGGATACCATTGG-TATA-AGGTC
** *
26682833 GTTGCTATGTGCTGATTTCACCCAATACCATTGAGTATAAAGGTG
1 GTTGCTATGTGCTGATTTCACCGGATACCATTG-GTAT-AAGGTC
* * *
26682878 GTTGCTATGTGTTGATTTCA-CGGAGTACTATTGACTATAAGGGTC
1 GTTGCTATGTGCTGATTTCACCGGA-TACCATTG-GTATAA-GGTC
26682923 G-TGCTATGTGCTGAT
1 GTTGCTATGTGCTGAT
26682938 CCACCGTCTA
Statistics
Matches: 87, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
44 17 0.20
45 68 0.78
46 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.37
Consensus pattern (43 bp):
GTTGCTATGTGCTGATTTCACCGGATACCATTGGTATAAGGTC
Found at i:26690076 original size:45 final size:44
Alignment explanation
Indices: 26689905--26690102 Score: 157
Period size: 45 Copynumber: 4.4 Consensus size: 44
26689895 TTAAAAAAAA
* * * ** **
26689905 GTGGATGCTATGTGCTGATTCCACCTGATATTAATGAAAATAAAG
1 GTGGTTGCTATGTGCTGATTTCACC-GGTACCAATGAGTATAAAG
* * *
26689950 GTGGTTGTTATGTGCTGATTTCACTGGATACCAATG-GTTATATAG
1 GTGGTTGCTATGTGCTGATTTCACCGG-TACCAATGAG-TATAAAG
** * * *
26689995 GTCATTGCTATGTGGTGATTTCACCCGGTACCATTGAGTACAAAG
1 GTGGTTGCTATGTGCTGATTTCA-CCGGTACCAATGAGTATAAAG
* * * *
26690040 GTGGTTGCTATGTGCTGATTTCACCGAGTACTATTGACTATAAGG
1 GTGGTTGCTATGTGCTGATTTCACCG-GTACCAATGAGTATAAAG
*
26690085 GTGG-TGCTGTGTGCTGAT
1 GTGGTTGCTATGTGCTGAT
26690103 CCACCATGTA
Statistics
Matches: 122, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
44 17 0.14
45 101 0.83
46 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.35
Consensus pattern (44 bp):
GTGGTTGCTATGTGCTGATTTCACCGGTACCAATGAGTATAAAG
Found at i:26696517 original size:20 final size:21
Alignment explanation
Indices: 26696459--26696518 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
26696449 TCAGAATGCT
* *
26696459 AACAGAGGAACCGTAGTGCAA
1 AACAGAGGCACCGAAGTGCAA
* * *
26696480 ATACAGAGGCATCAAAGTTC-A
1 A-ACAGAGGCACCGAAGTGCAA
26696501 AACAGAGGCACCGAAGTG
1 AACAGAGGCACCGAAGTG
26696519 TAAATCTTGT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
20 14 0.47
21 3 0.10
22 13 0.43
ACGTcount: A:0.42, C:0.20, G:0.27, T:0.12
Consensus pattern (21 bp):
AACAGAGGCACCGAAGTGCAA
Found at i:26700889 original size:316 final size:316
Alignment explanation
Indices: 26700316--26700947 Score: 1187
Period size: 316 Copynumber: 2.0 Consensus size: 316
26700306 CCTGGATTTA
26700316 ACATCCCTGTCTAAGCTTATTTTCTGATGTGCAAGATCCATTGAATGGCAAGCATAGAGCATGCT
1 ACATCCCTGTCTAAGCTTATTTTCTGATGTGCAAGATCCATTGAATGGCAAGCATAGAGCATGCT
26700381 TCTAAACTCATGGGAGATCTTCTTTCATTGATATTCCCTTATCAGAGAGGAAGAGGAATAGAGAG
66 TCTAAACTCATGGGAGATCTTCTTTCATTGATATTCCCTTATCAGAGAGGAAGAGGAATAGAGAG
**
26700446 GTTTAGAAAGACATGATTTTCAAAACACACTGATATTTTTTTTGCCAAACTTGTTCTTACATTGA
131 GTTTAGAAAGACATGAACTTCAAAACACACTGATATTTTTTTTGCCAAACTTGTTCTTACATTGA
26700511 GAACTTAAGTCCATTATATAGGGGATAAAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTAC
196 GAACTTAAGTCCATTATATAGGGGATAAAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTAC
26700576 AAAGTGAAGACATCAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGT
261 AAAGTGAAGACATCAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGT
26700632 ACATCCCTGTCTAAGCTTATTTTCTGATGTGCAAGATCCATTGAATGGCAAGCATAGAGCATGCT
1 ACATCCCTGTCTAAGCTTATTTTCTGATGTGCAAGATCCATTGAATGGCAAGCATAGAGCATGCT
26700697 TCTAAACTCATGGGAGATCTTCTTTCATTGATATTCCCTTATCAGAGAGGAAGAGGAATAGAGAG
66 TCTAAACTCATGGGAGATCTTCTTTCATTGATATTCCCTTATCAGAGAGGAAGAGGAATAGAGAG
* **
26700762 GTTTAGAAAGATGA-GAACTT-AAGTCCACACTGATATTTTTTTTGCCAAACTTGTTCTTACATT
131 GTTTAGAAAGA-CATGAACTTCAA-AACACACTGATATTTTTTTTGCCAAACTTGTTCTTACATT
26700825 GAGAACTTAAGTCCATTATATAGGGGATAAAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTT
194 GAGAACTTAAGTCCATTATATAGGGGATAAAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTT
26700890 ACAAAGTGAAGACATCAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGT
259 ACAAAGTGAAGACATCAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGT
26700948 GAAAGACAAA
Statistics
Matches: 309, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
315 2 0.01
316 306 0.99
317 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (316 bp):
ACATCCCTGTCTAAGCTTATTTTCTGATGTGCAAGATCCATTGAATGGCAAGCATAGAGCATGCT
TCTAAACTCATGGGAGATCTTCTTTCATTGATATTCCCTTATCAGAGAGGAAGAGGAATAGAGAG
GTTTAGAAAGACATGAACTTCAAAACACACTGATATTTTTTTTGCCAAACTTGTTCTTACATTGA
GAACTTAAGTCCATTATATAGGGGATAAAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTAC
AAAGTGAAGACATCAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGT
Found at i:26700984 original size:50 final size:50
Alignment explanation
Indices: 26700854--26701006 Score: 236
Period size: 50 Copynumber: 3.0 Consensus size: 50
26700844 ATAGGGGATA
26700854 AAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGTG-AAGAC
1 AAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGTGAAAGAC
26700903 ATCAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGTGAAAGAC
1 A--AAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGTGAAAGAC
** * * *
26700955 AAAGCTAAACGAGCAGATAAGAGACAATCTGCTTTCACAAAATGAAAGAC
1 AAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGTGAAAGAC
26701005 AA
1 AA
26701007 TTATTCATAT
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
49 1 0.01
50 46 0.48
51 43 0.45
52 6 0.06
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.18
Consensus pattern (50 bp):
AAAGCTAAACGAGCAGATAAGAGGGAATCTACTTTTACAAAGTGAAAGAC
Found at i:26712038 original size:297 final size:297
Alignment explanation
Indices: 26711504--26712096 Score: 1132
Period size: 297 Copynumber: 2.0 Consensus size: 297
26711494 GAGCACTGAT
*
26711504 GTGCTAATAATAGAAGTATCAAAGTACAAAACAAGAGTCCCCTATTAGCATGTCAATCATACCCT
1 GTGCTAATAATAGAAGTATCAAAGTACAAAACAAGAGTCCCCTATTAGCATGTAAATCATACCCT
**
26711569 AACTATGTATGTAAGATACCAGGGCCTTGTTTCATGGTTTTCAGAATATTAGTAAATTCATGTGT
66 AACTATGTATGTAAGATACCAGGGCCTTGTTTCATGGTTTTCAGAATATTAGTAAAACCATGTGT
*
26711634 CAAATCAAATTACAGTGCAATATCAATATTCATGGAGTAAACCACTATAATATAAATCAATAATT
131 CAAATCAAATTACAGTGCAATATCAATATTCATGGAGTAAACCACTACAATATAAATCAATAATT
26711699 AAAATCATGGAATTATGCCACTACACAAGATCTCAAAGCTTTCATTCTTATCTCCATAAGGAGAG
196 AAAATCATGGAATTATGCCACTACACAAGATCTCAAAGCTTTCATTCTTATCTCCATAAGGAGAG
26711764 ATTTTACAACGTTTTTTTCTTAAATTCATTTTCATGA
261 ATTTTACAACGTTTTTTTCTTAAATTCATTTTCATGA
*
26711801 GTGCTAATAATAGGAGTATCAAAGTACAAAACAAGAGTCCCCTATTAGCATGTAAATCATACCCT
1 GTGCTAATAATAGAAGTATCAAAGTACAAAACAAGAGTCCCCTATTAGCATGTAAATCATACCCT
26711866 AACTATGTATGTAAGATACCAGGGCCTTGTTTCATGGTTTTCAGAATATTAGTAAAACCATGTGT
66 AACTATGTATGTAAGATACCAGGGCCTTGTTTCATGGTTTTCAGAATATTAGTAAAACCATGTGT
26711931 CAAATCAAATTACAGTGCAATATCAATATTCATGGAGTAAACCACTACAATATAAATCAATAATT
131 CAAATCAAATTACAGTGCAATATCAATATTCATGGAGTAAACCACTACAATATAAATCAATAATT
*
26711996 AAAATCATGGAATTATGCCACTACACAAGATCTCAGAGCTTTCATTCTTATCTCCATAAGGAGAG
196 AAAATCATGGAATTATGCCACTACACAAGATCTCAAAGCTTTCATTCTTATCTCCATAAGGAGAG
26712061 ATTTTACAACGTTTTTTTCTTAAATTCATTTTCATG
261 ATTTTACAACGTTTTTTTCTTAAATTCATTTTCATG
26712097 CCAATAATCA
Statistics
Matches: 290, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
297 290 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (297 bp):
GTGCTAATAATAGAAGTATCAAAGTACAAAACAAGAGTCCCCTATTAGCATGTAAATCATACCCT
AACTATGTATGTAAGATACCAGGGCCTTGTTTCATGGTTTTCAGAATATTAGTAAAACCATGTGT
CAAATCAAATTACAGTGCAATATCAATATTCATGGAGTAAACCACTACAATATAAATCAATAATT
AAAATCATGGAATTATGCCACTACACAAGATCTCAAAGCTTTCATTCTTATCTCCATAAGGAGAG
ATTTTACAACGTTTTTTTCTTAAATTCATTTTCATGA
Found at i:26714178 original size:22 final size:22
Alignment explanation
Indices: 26714140--26714192 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
26714130 ATATCTCCCG
*
26714140 CAAAAAAATCAGTAGAAAAAAGT
1 CAAAAAAATCAGAAGAAAAAA-T
*
26714163 CAAAAAAAT-AGAAGAAGAAAT
1 CAAAAAAATCAGAAGAAAAAAT
26714184 CAAATAAAA
1 CAAA-AAAA
26714193 ATTAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 5 0.19
22 13 0.48
23 9 0.33
ACGTcount: A:0.70, C:0.08, G:0.11, T:0.11
Consensus pattern (22 bp):
CAAAAAAATCAGAAGAAAAAAT
Found at i:26720652 original size:7 final size:7
Alignment explanation
Indices: 26720642--26720667 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26720632 AGTTTTTAAG
26720642 GTTTAGA
1 GTTTAGA
26720649 GTTTAGA
1 GTTTAGA
26720656 GTTTAGA
1 GTTTAGA
26720663 GTTTA
1 GTTTA
26720668 TAAACTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (7 bp):
GTTTAGA
Found at i:26721541 original size:24 final size:24
Alignment explanation
Indices: 26721514--26721565 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
26721504 TCAGTATCAA
* *
26721514 TCATACAATTCATAGACAAAACAG
1 TCATACAAATCACAGACAAAACAG
** *
26721538 TCATTTAAATCACAGACAAATCAG
1 TCATACAAATCACAGACAAAACAG
26721562 TCAT
1 TCAT
26721566 TTTCATCACG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.25
Consensus pattern (24 bp):
TCATACAAATCACAGACAAAACAG
Found at i:26721566 original size:24 final size:24
Alignment explanation
Indices: 26721527--26721593 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
26721517 TACAATTCAT
*
26721527 AGACAAAACAGTCATTTAAATCAC
1 AGACAAATCAGTCATTTAAATCAC
**
26721551 AGACAAATCAGTCATTTTCATCAC
1 AGACAAATCAGTCATTTAAATCAC
* *
26721575 GGACAAATCAATCATTTAA
1 AGACAAATCAGTCATTTAA
26721594 CCTCGAGGGA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.25
Consensus pattern (24 bp):
AGACAAATCAGTCATTTAAATCAC
Found at i:26721624 original size:27 final size:26
Alignment explanation
Indices: 26721594--26721811 Score: 140
Period size: 27 Copynumber: 8.1 Consensus size: 26
26721584 AATCATTTAA
*
26721594 CCTCGAGGGAAAAATTTACTGAAATAC
1 CCTCGAGGGTAAAA-TTACTGAAATAC
*
26721621 CCTCAATGGGTAAAATTA-TCGAAATAC
1 CCTCGA-GGGTAAAATTACT-GAAATAC
* *
26721648 CCTCGAAGGTTAAAATCACTGAAATAC
1 CCTCG-AGGGTAAAATTACTGAAATAC
**
26721675 CC-CTGAAGGGTAAAATTACCAAAATATC
1 CCTC-G-AGGGTAAAATTACTGAAATA-C
* ** *
26721703 CTTAAAGGGTAAAATTA-TCGAAGTAC
1 CCTCGAGGGTAAAATTACT-GAAATAC
* * *
26721729 CC-CTGAAGCGTAAAACTACCGAAATAC
1 CCTC-G-AGGGTAAAATTACTGAAATAC
*
26721756 CCTCGAAGGGTAAAATTATTGAAATAC
1 CCTCG-AGGGTAAAATTACTGAAATAC
**
26721783 CCTTAAAGGGTAAAATTA-TCGAAATAC
1 CC-TCGAGGGTAAAATTACT-GAAATAC
26721810 CC
1 CC
26721812 AATCCAACCA
Statistics
Matches: 149, Mismatches: 28, Indels: 28
0.73 0.14 0.14
Matches are distributed among these distances:
26 5 0.03
27 131 0.88
28 13 0.09
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (26 bp):
CCTCGAGGGTAAAATTACTGAAATAC
Found at i:26721676 original size:54 final size:54
Alignment explanation
Indices: 26721594--26721811 Score: 244
Period size: 54 Copynumber: 4.0 Consensus size: 54
26721584 AATCATTTAA
* * *
26721594 CCTCG-AGGGAAAAATTTACTGAAATA-CCCTCAATGGGTAAAATTATCGAAATAC
1 CCTCGAAGGGTAAAA-TTACTGAAATACCCCTGAA-GGGTAAAATTACCGAAATAC
* * * *
26721648 CCTCGAAGGTTAAAATCACTGAAATACCCCTGAAGGGTAAAATTACCAAAATAT
1 CCTCGAAGGGTAAAATTACTGAAATACCCCTGAAGGGTAAAATTACCGAAATAC
** * * *
26721702 CCTTAAAGGGTAAAATTA-TCGAAGTACCCCTGAAGCGTAAAACTACCGAAATAC
1 CCTCGAAGGGTAAAATTACT-GAAATACCCCTGAAGGGTAAAATTACCGAAATAC
* * * *
26721756 CCTCGAAGGGTAAAATTATTGAAATACCCTTAAAGGGTAAAATTATCGAAATAC
1 CCTCGAAGGGTAAAATTACTGAAATACCCCTGAAGGGTAAAATTACCGAAATAC
26721810 CC
1 CC
26721812 AATCCAACCA
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 121 0.89
55 14 0.10
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (54 bp):
CCTCGAAGGGTAAAATTACTGAAATACCCCTGAAGGGTAAAATTACCGAAATAC
Found at i:26721715 original size:81 final size:81
Alignment explanation
Indices: 26721615--26721811 Score: 258
Period size: 81 Copynumber: 2.4 Consensus size: 81
26721605 AAATTTACTG
* * *
26721615 AAATACCCTCAATGGGTAAAATTATCGAAATA-CCCTCGAAG-GTTAAAA-TCACTGAAATACCC
1 AAATACCCTTAAAGGGTAAAATTATCGAAATACCCCT-GAAGCG-TAAAACT-ACCGAAATACCC
26721677 -CTGAAGGGTAAAATTACCA
63 TC-GAAGGGTAAAATTACCA
* *
26721696 AAATATCCTTAAAGGGTAAAATTATCGAAGTACCCCTGAAGCGTAAAACTACCGAAATACCCTCG
1 AAATACCCTTAAAGGGTAAAATTATCGAAATACCCCTGAAGCGTAAAACTACCGAAATACCCTCG
***
26721761 AAGGGTAAAATTATTG
66 AAGGGTAAAATTACCA
26721777 AAATACCCTTAAAGGGTAAAATTATCGAAATACCC
1 AAATACCCTTAAAGGGTAAAATTATCGAAATACCC
26721812 AATCCAACCA
Statistics
Matches: 102, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
81 95 0.93
82 7 0.07
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (81 bp):
AAATACCCTTAAAGGGTAAAATTATCGAAATACCCCTGAAGCGTAAAACTACCGAAATACCCTCG
AAGGGTAAAATTACCA
Found at i:26730858 original size:47 final size:48
Alignment explanation
Indices: 26730807--26730901 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 48
26730797 ATGCTGAAAT
*
26730807 TATTTAAGCAACT-A-AAAATTCAAAACAACTTAATTAATTAAACTAAG
1 TATTTAAGCAACTAAGAAAATT-AAAACAACTGAATTAATTAAACTAAG
*
26730854 TATTTAAGCAACTAAAGAAAATTAAAACAACTGGATTAATTAAACTAA
1 TATTTAAGCAACT-AAGAAAATTAAAACAACTGAATTAATTAAACTAA
26730902 ACATATTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 13 0.30
49 24 0.56
50 6 0.14
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.28
Consensus pattern (48 bp):
TATTTAAGCAACTAAGAAAATTAAAACAACTGAATTAATTAAACTAAG
Found at i:26734019 original size:18 final size:16
Alignment explanation
Indices: 26733977--26734022 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
26733967 TTTAAGATTT
26733977 TCTTTTCTTTTT-TTC
1 TCTTTTCTTTTTCTTC
*
26733992 TCTATT-TTTTTCTTC
1 TCTTTTCTTTTTCTTC
26734007 TTCTTTTTCTTTTTCT
1 -TC-TTTTCTTTTTCT
26734023 ATTGTCTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 8 0.32
16 2 0.08
17 3 0.12
18 7 0.28
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (16 bp):
TCTTTTCTTTTTCTTC
Found at i:26737257 original size:49 final size:47
Alignment explanation
Indices: 26737171--26737265 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 47
26737161 ATGCCGAAAT
*
26737171 TATTTAAGCAACTAAAAATTCAAAACAACTTAATTAATTAAACTAAG
1 TATTTAAGCAACTAAAAATTCAAAACAACTAAATTAATTAAACTAAG
26737218 TATTTAAGCAACTAAAGAAAATT-AAAACAACTAAATTAATTAAACTAA
1 TATTTAAGCAACT--A-AAAATTCAAAACAACTAAATTAATTAAACTAA
26737266 ACATATTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
47 13 0.30
49 25 0.57
50 6 0.14
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.28
Consensus pattern (47 bp):
TATTTAAGCAACTAAAAATTCAAAACAACTAAATTAATTAAACTAAG
Found at i:26743052 original size:51 final size:52
Alignment explanation
Indices: 26742962--26743065 Score: 174
Period size: 51 Copynumber: 2.0 Consensus size: 52
26742952 TCGCCGAGAA
* *
26742962 TTGAGAGAAAAAGGAAAAAAAATTATTTGAAGAATGGCTGAAATGAAGATTC
1 TTGAGAGAAAAAGGAAAAAAAATTATTTGAACAAGGGCTGAAATGAAGATTC
*
26743014 TTGAGAGAAAAAGG-AAAAAAATTATTTGAACAAGGGCTGAAATGAAGTTTC
1 TTGAGAGAAAAAGGAAAAAAAATTATTTGAACAAGGGCTGAAATGAAGATTC
26743065 T
1 T
26743066 GAAATTTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 35 0.71
52 14 0.29
ACGTcount: A:0.48, C:0.05, G:0.23, T:0.24
Consensus pattern (52 bp):
TTGAGAGAAAAAGGAAAAAAAATTATTTGAACAAGGGCTGAAATGAAGATTC
Found at i:26743711 original size:3 final size:3
Alignment explanation
Indices: 26743691--26743785 Score: 91
Period size: 3 Copynumber: 31.7 Consensus size: 3
26743681 TTAATTTTAA
* * * * * * * * *
26743691 TAT TTT TAT TAT TGT TAT TAT TAT TAA TAC CAT CAT CAT CAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
26743739 TAT TAT TAA TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
26743786 AATTGTTTTA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:26754039 original size:50 final size:50
Alignment explanation
Indices: 26753950--26754066 Score: 144
Period size: 50 Copynumber: 2.3 Consensus size: 50
26753940 AGGTCCTATA
* * * * ** *
26753950 TAAGACCATGTCTGGGACATGGCGTTGGTACCGAGATGAGAGGTCCCCCG
1 TAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACTCCCACG
* *
26754000 TAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATG
1 TAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACTCCCACG
*
26754050 TAAGACCATATCTGGGA
1 TAAGACCATGTCTGGGA
26754067 TATGACATTT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACTCCCACG
Found at i:26754378 original size:20 final size:20
Alignment explanation
Indices: 26754340--26754378 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26754330 TAAGTAAGCA
* *
26754340 AGTAAGTAAATAAGTAAGAG
1 AGTAAGTAAAGAAGAAAGAG
26754360 AGTAAGTAAAGAAGAAAGA
1 AGTAAGTAAAGAAGAAAGA
26754379 AAAGATCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (20 bp):
AGTAAGTAAAGAAGAAAGAG
Found at i:26759470 original size:22 final size:22
Alignment explanation
Indices: 26759442--26759488 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
26759432 TTTATTTAAG
26759442 TAAGTTTAATGTTTGTTATGAT
1 TAAGTTTAATGTTTGTTATGAT
26759464 TAAGTTTAATGTTTGTTATGAT
1 TAAGTTTAATGTTTGTTATGAT
26759486 TAA
1 TAA
26759489 TAAGTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (22 bp):
TAAGTTTAATGTTTGTTATGAT
Found at i:26760244 original size:12 final size:11
Alignment explanation
Indices: 26760227--26760279 Score: 72
Period size: 11 Copynumber: 4.7 Consensus size: 11
26760217 AGCATCTTCG
26760227 AAAAAAAATTTC
1 AAAAAAAA-TTC
26760239 AAAAAAAAATTC
1 -AAAAAAAATTC
26760251 AAAAAAAA-TC
1 AAAAAAAATTC
*
26760261 GAAAAAAATTC
1 AAAAAAAATTC
26760272 AAAAAAAA
1 AAAAAAAA
26760280 AGTTTCCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
10 9 0.24
11 17 0.46
12 3 0.08
13 8 0.22
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.15
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:26760280 original size:12 final size:12
Alignment explanation
Indices: 26760227--26760280 Score: 69
Period size: 12 Copynumber: 4.8 Consensus size: 12
26760217 AGCATCTTCG
*
26760227 AAAAAAAATTTC
1 AAAAAAAAATTC
26760239 AAAAAAAAATTC
1 AAAAAAAAATTC
26760251 -AAAAAAAA-TC
1 AAAAAAAAATTC
*
26760261 -GAAAAAAATTC
1 AAAAAAAAATTC
26760272 AAAAAAAAA
1 AAAAAAAAA
26760281 GTTTCCATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 9 0.24
11 10 0.27
12 18 0.49
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15
Consensus pattern (12 bp):
AAAAAAAAATTC
Found at i:26760335 original size:14 final size:14
Alignment explanation
Indices: 26760316--26760353 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
26760306 GATATCAAGT
26760316 TGAAAAAAAAATCG
1 TGAAAAAAAAATCG
*
26760330 TG-AAAAAAAATTG
1 TGAAAAAAAAATCG
26760343 TGAAAAAAAAA
1 TGAAAAAAAAA
26760354 AAGAAGAAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.68, C:0.03, G:0.13, T:0.16
Consensus pattern (14 bp):
TGAAAAAAAAATCG
Found at i:26766960 original size:46 final size:47
Alignment explanation
Indices: 26766882--26766994 Score: 201
Period size: 46 Copynumber: 2.4 Consensus size: 47
26766872 GTCACAGTAA
*
26766882 TGCAGATAAACTGCCAATAATCAAAATTGTGGACAAGCCACCAAAAT
1 TGCAGATAAACTGCCAATAATCAAAATCGTGGACAAGCCACCAAAAT
*
26766929 TGCATATAAACTGCCAA-AATCAAAATCGTGGACAAGCCACCAAAAT
1 TGCAGATAAACTGCCAATAATCAAAATCGTGGACAAGCCACCAAAAT
26766975 TGCAGATAAACTGCCAATAA
1 TGCAGATAAACTGCCAATAA
26766995 CTTCCACCTT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
46 44 0.71
47 18 0.29
ACGTcount: A:0.45, C:0.22, G:0.14, T:0.19
Consensus pattern (47 bp):
TGCAGATAAACTGCCAATAATCAAAATCGTGGACAAGCCACCAAAAT
Found at i:26780514 original size:50 final size:50
Alignment explanation
Indices: 26780449--26780671 Score: 151
Period size: 50 Copynumber: 4.4 Consensus size: 50
26780439 TATGTTGTAA
* *
26780449 TATGTGTAGGGTACTACGTGTACCGGAATGAAAGGTTGCA-TGTGTAGTAC
1 TATGTGCAGGCTACTACGTGTACCGGAAT-AAAGGTTGCAGTGTGTAGTAC
* * * *
26780499 TATGTGCAAGCTACTATGCG-ACCGG-AT--AGCTTCGATCACGTGTGTAGTAC
1 TATGTGCAGGCTACTACGTGTACCGGAATAAAGGTT-G--CA-GTGTGTAGTAC
* *
26780549 TATGTGCAGGCTACTACGTGTATCGGATATTAATGG-T-CATGTGTGTAGTAC
1 TATGTGCAGGCTACTACGTGTACCGGA-A-TAAAGGTTGCA-GTGTGTAGTAC
* * * **
26780600 TATGTGCAGGCTACTACGTGAACC---AGAAAGTTTGATCACGTGTGTAGTTG
1 TATGTGCAGGCTACTACGTGTACCGGAATAAAGGTTG--CA-GTGTGTAGTAC
*
26780650 TATGTGAAGGCTACTACGTGTA
1 TATGTGCAGGCTACTACGTGTA
26780672 TCGAATGATA
Statistics
Matches: 135, Mismatches: 23, Indels: 30
0.72 0.12 0.16
Matches are distributed among these distances:
45 4 0.03
46 4 0.03
47 2 0.01
48 4 0.03
49 5 0.04
50 73 0.54
51 39 0.29
53 1 0.01
54 1 0.01
55 1 0.01
56 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
TATGTGCAGGCTACTACGTGTACCGGAATAAAGGTTGCAGTGTGTAGTAC
Found at i:26780597 original size:51 final size:50
Alignment explanation
Indices: 26780489--26780674 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 50
26780479 AAAGGTTGCA
* * * * * *
26780489 TGTGTAGTACTATGTGCAAGCTACTATGCG-ACCGGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAAAG-TTTGATCACG
* * *
26780539 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATA-TTAATGGTCATG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAAAGTT--TGATCACG
* * *
26780590 TGTGTAGTACTATGTGCAGGCTACTACGTGAACCAGAAAGTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAAAGTTTGATCACG
** *
26780640 TGTGTAGTTGTATGTGAAGGCTACTACGTGTATCG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCG
26780675 AATGATAATA
Statistics
Matches: 113, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
49 2 0.02
50 62 0.55
51 47 0.42
52 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAAAGTTTGATCACG
Found at i:26780606 original size:101 final size:101
Alignment explanation
Indices: 26780489--26780674 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 101
26780479 AAAGGTTGCA
* * *
26780489 TGTGTAGTACTATGTGCAAGCTACTATGCG-ACCGGATAGCTTCGATCACGTGTGTAGTACTATG
1 TGTGTAGTACTATGTGCAAGCTACTACGCGAACCAGAAAG-TTCGATCACGTGTGTAGTACTATG
*
26780553 TGCAGGCTACTACGTGTATCGGATATTAATGGTCATG
65 TGAAGGCTACTACGTGTATCGGATATTAATGGTCATG
* * * **
26780590 TGTGTAGTACTATGTGCAGGCTACTACGTGAACCAGAAAGTTTGATCACGTGTGTAGTTGTATGT
1 TGTGTAGTACTATGTGCAAGCTACTACGCGAACCAGAAAGTTCGATCACGTGTGTAGTACTATGT
26780655 GAAGGCTACTACGTGTATCG
66 GAAGGCTACTACGTGTATCG
26780675 AATGATAATA
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
101 68 0.91
102 7 0.09
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (101 bp):
TGTGTAGTACTATGTGCAAGCTACTACGCGAACCAGAAAGTTCGATCACGTGTGTAGTACTATGT
GAAGGCTACTACGTGTATCGGATATTAATGGTCATG
Found at i:26780701 original size:101 final size:101
Alignment explanation
Indices: 26780492--26780709 Score: 260
Period size: 101 Copynumber: 2.2 Consensus size: 101
26780482 GGTTGCATGT
* * * *
26780492 GTAGTACTATGTGCAAGCTACTATGCGACCGGATAGCTTCGATCACGTGTGTAGTACTATGTGCA
1 GTAGTACTATGTGCAAGCTACTACGCGACCAGAAAGCTTCGATCACGTGTGTAGTACTATGTGAA
* * ** *
26780557 GGCTACTACGTGTATCGGATATTAATGGTCATGTGT
66 GGCTACTACGTGTATCGAATATTAATAGTCAAATGA
* * * **
26780593 GTAGTACTATGTGCAGGCTACTACGTGAACCAGAAAG-TTTGATCACGTGTGTAGTTGTATGTGA
1 GTAGTACTATGTGCAAGCTACTACGCG-ACCAGAAAGCTTCGATCACGTGTGTAGTACTATGTGA
*
26780657 AGGCTACTACGTGTATCGAATGA-TAATAGTTAAATGA
65 AGGCTACTACGTGTATCGAAT-ATTAATAGTCAAATGA
*
26780694 GTGGTACTATGTGCAA
1 GTAGTACTATGTGCAA
26780710 ACCACTGAAT
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
101 90 0.92
102 8 0.08
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (101 bp):
GTAGTACTATGTGCAAGCTACTACGCGACCAGAAAGCTTCGATCACGTGTGTAGTACTATGTGAA
GGCTACTACGTGTATCGAATATTAATAGTCAAATGA
Found at i:26790169 original size:5 final size:5
Alignment explanation
Indices: 26790125--26790152 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
26790115 GTTGATAGAG
26790125 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
26790153 CTATAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:26794436 original size:13 final size:13
Alignment explanation
Indices: 26794418--26794451 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
26794408 GAAAAGTTTA
26794418 TTATGATTAATTT
1 TTATGATTAATTT
26794431 TTATGATTAATTT
1 TTATGATTAATTT
26794444 TTATGATT
1 TTATGATT
26794452 TACCAATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (13 bp):
TTATGATTAATTT
Found at i:26795439 original size:21 final size:21
Alignment explanation
Indices: 26795413--26795479 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
26795403 ATTTTTCAGC
26795413 AATTATGTACTTATTTCATAA
1 AATTATGTACTTATTTCATAA
* * *
26795434 AATTAT-T--TAATGTTGACT-C
1 AATTATGTACTTAT-TTCA-TAA
26795453 AATTATGTACTTATTTCATAA
1 AATTATGTACTTATTTCATAA
26795474 AATTAT
1 AATTAT
26795480 TTGATCATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
18 3 0.09
19 9 0.26
20 4 0.12
21 15 0.44
22 3 0.09
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.48
Consensus pattern (21 bp):
AATTATGTACTTATTTCATAA
Found at i:26795690 original size:50 final size:50
Alignment explanation
Indices: 26795594--26795699 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 50
26795584 TATTGAGGTT
* * *
26795594 ATGAGAGGTCCCTCGTAATACCATGCCTGAGACATGGTCTTAGCACCGAA
1 ATGAGAGGTCCCCCGTAAGACCATGCCTGAGACATGGTCTGAGCACCGAA
** * * *
26795644 ATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGG-CATGGGCACCGAT
1 ATGAGAGGTCCCCCGTAAGACCATGCCTGAGACATGGTC-TGAGCACCGAA
26795694 ATGAGA
1 ATGAGA
26795700 ACTCCCATGT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
49 1 0.02
50 46 0.98
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCCCGTAAGACCATGCCTGAGACATGGTCTGAGCACCGAA
Found at i:26795771 original size:49 final size:49
Alignment explanation
Indices: 26795658--26795777 Score: 129
Period size: 49 Copynumber: 2.4 Consensus size: 49
26795648 GAGGTCCCCC
* * *
26795658 GTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCA-CGACAGGAGAACTCCCAT
* * * *
26795708 GTAAGA-TATATCTGGGATATGGCATTGGCA-GTACAGGA-AACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACG-ACAGGAGAAC-TCCCAT
26795756 GTAAGACCATGTCTGGGACATG
1 GTAAGACCATGTCTGGGACATG
26795778 ACTTTGGCAT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
47 4 0.07
48 16 0.28
49 31 0.54
50 6 0.11
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACGACAGGAGAACTCCCAT
Found at i:26796014 original size:20 final size:20
Alignment explanation
Indices: 26795989--26796027 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26795979 TGAGTTATTT
26795989 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
26796009 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
26796028 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:26803504 original size:5 final size:5
Alignment explanation
Indices: 26803496--26803534 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
26803486 ATTGATAAAG
* *
26803496 AAAAT AAAAT AAACT AAAAT ATAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
26803535 ACATATTTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:26809858 original size:19 final size:19
Alignment explanation
Indices: 26809836--26809872 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26809826 TCAAAATTTT
*
26809836 AAAATCAAATTTAAACTAA
1 AAAATCAAATTCAAACTAA
26809855 AAAATCAAATTCAAACTA
1 AAAATCAAATTCAAACTA
26809873 CTTATAGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAATCAAATTCAAACTAA
Found at i:26812179 original size:27 final size:27
Alignment explanation
Indices: 26812148--26812453 Score: 364
Period size: 27 Copynumber: 11.4 Consensus size: 27
26812138 CCCTAAAATT
* *
26812148 GGTAAAATGACCAAAATACCCCTATAA
1 GGTAAAATGACCGAAATACCCCCATAA
26812175 GGTAAAATGACCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAA
* * *
26812202 GGTAAAATAACCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAA
* * *
26812229 GGTAAAATAACCAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAA
* *
26812256 GGTAAAATAATCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAA
* *
26812283 GGTAAAATGACCAAAATACCTCCATAA
1 GGTAAAATGACCGAAATACCCCCATAA
* *
26812310 GGTTAAATGACCAAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAA
* * *
26812337 GGTAAAATGACCGAAATACCCCTAGAG
1 GGTAAAATGACCGAAATACCCCCATAA
* *
26812364 GGTAAAATGACCAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAA
* * *
26812391 GGTAAAGTAATCGAAATACCCCC-T-A
1 GGTAAAATGACCGAAATACCCCCATAA
* * *
26812416 GCGTAGAATGATCGAAATACCCCCATAG
1 G-GTAAAATGACCGAAATACCCCCATAA
26812444 GGTAAAATGA
1 GGTAAAATGA
26812454 GTGTTATACC
Statistics
Matches: 242, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
25 1 0.00
26 20 0.08
27 220 0.91
28 1 0.00
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.17
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAA
Found at i:26814378 original size:35 final size:35
Alignment explanation
Indices: 26814335--26814457 Score: 147
Period size: 35 Copynumber: 3.5 Consensus size: 35
26814325 TGATATTCTT
* *
26814335 ATTCGCATGTTAAGCATGTTATTATTCTGGTTATG
1 ATTCGCATGTTAAGCATGCTATTATTCTGATTATG
* * *
26814370 ATTTGCATGTTAAGAATGCTATTATTCTAATTATG
1 ATTCGCATGTTAAGCATGCTATTATTCTGATTATG
* * **
26814405 ATTCACATGTTAAGCATGCCATTATTCTGAAAATG
1 ATTCGCATGTTAAGCATGCTATTATTCTGATTATG
* *
26814440 ACTCACATGTTAAGCATG
1 ATTCGCATGTTAAGCATG
26814458 TCACTATGTT
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 75 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (35 bp):
ATTCGCATGTTAAGCATGCTATTATTCTGATTATG
Found at i:26815535 original size:22 final size:22
Alignment explanation
Indices: 26815507--26815571 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
26815497 AAAGCTGCCA
26815507 GTAAACAGAATGGCTA-AGAGCT
1 GTAAACAGAATGGCTATA-AGCT
* *
26815529 GTAAACAGGATAGCTATAAGCT
1 GTAAACAGAATGGCTATAAGCT
* *
26815551 ATAAACAGAATGGCTACAAGC
1 GTAAACAGAATGGCTATAAGC
26815572 CATAAGTACA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
22 35 0.97
23 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.18
Consensus pattern (22 bp):
GTAAACAGAATGGCTATAAGCT
Found at i:26815576 original size:22 final size:21
Alignment explanation
Indices: 26815503--26815576 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
26815493 CAGCAAAGCT
26815503 GCCAGTAAACAGAATGGCTAAGA
1 GCCA-TAAACAGAATGGCTAA-A
** * *
26815526 GCTGTAAACAGGATAGCTATAA
1 GCCATAAACAGAATGGCTA-AA
*
26815548 GCTATAAACAGAATGGCTACAA
1 GCCATAAACAGAATGGCTA-AA
26815570 GCCATAA
1 GCCATAA
26815577 GTACAGTAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
22 38 0.93
23 3 0.07
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.18
Consensus pattern (21 bp):
GCCATAAACAGAATGGCTAAA
Found at i:26815642 original size:29 final size:30
Alignment explanation
Indices: 26815568--26815706 Score: 100
Period size: 32 Copynumber: 4.4 Consensus size: 30
26815558 GAATGGCTAC
* ** *
26815568 AAGCCATAAGTACAGTAATATGATTAGTACA
1 AAGCCATCAGTA-AGTAATATGATCGGCACA
* *
26815599 AAGTCATTCGTAGTAA-TGATATGATCGGCACA
1 AAGCCA-TC--AGTAAGTAATATGATCGGCACA
*
26815631 CAGCCATCAGTAACGGTAATATGATCGGCACA
1 AAGCCATCAGTAA--GTAATATGATCGGCACA
* ** *
26815663 AAGCCATCAGTAACGGTAATATGTTCAACATA
1 AAGCCATCAGTAA--GTAATATGATCGGCACA
26815695 AAGCCATCAGTA
1 AAGCCATCAGTA
26815707 GCATCACAGC
Statistics
Matches: 88, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
29 5 0.06
31 7 0.08
32 71 0.81
33 1 0.01
34 4 0.05
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (30 bp):
AAGCCATCAGTAAGTAATATGATCGGCACA
Found at i:26815653 original size:32 final size:32
Alignment explanation
Indices: 26815617--26815706 Score: 135
Period size: 32 Copynumber: 2.8 Consensus size: 32
26815607 CGTAGTAATG
*
26815617 ATATGATCGGCACACAGCCATCAGTAACGGTA
1 ATATGATCGGCACAAAGCCATCAGTAACGGTA
26815649 ATATGATCGGCACAAAGCCATCAGTAACGGTA
1 ATATGATCGGCACAAAGCCATCAGTAACGGTA
* ** *
26815681 ATATGTTCAACATAAAGCCATCAGTA
1 ATATGATCGGCACAAAGCCATCAGTA
26815707 GCATCACAGC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (32 bp):
ATATGATCGGCACAAAGCCATCAGTAACGGTA
Found at i:26815946 original size:24 final size:24
Alignment explanation
Indices: 26815878--26815986 Score: 112
Period size: 24 Copynumber: 4.5 Consensus size: 24
26815868 CCATGCTCAG
**
26815878 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATTTAAATCACAGACA
* * *
26815902 AATTAGT-AATAACAATCACAGACA
1 AATCAGTCATTTA-AATCACAGACA
*
26815926 AATCAGTCATTTAAATTACAGACA
1 AATCAGTCATTTAAATCACAGACA
* * *
26815950 AATCAATCATTTACATCACGGACA
1 AATCAGTCATTTAAATCACAGACA
*
26815974 AATCAATCATTTA
1 AATCAGTCATTTA
26815987 CACTCGAGAG
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
23 2 0.03
24 66 0.93
25 3 0.04
ACGTcount: A:0.48, C:0.20, G:0.07, T:0.25
Consensus pattern (24 bp):
AATCAGTCATTTAAATCACAGACA
Found at i:26816048 original size:27 final size:27
Alignment explanation
Indices: 26816005--26816121 Score: 94
Period size: 27 Copynumber: 4.4 Consensus size: 27
26815995 AGGTAAAATA
* *
26816005 GTCA-TTTACCCTCTAGGGGCATTATG
1 GTCATTTTACCTTATAGGGGCATTATG
** *
26816031 GTCATTTTACCTTATAGGGATATT-TCA
1 GTCATTTTACCTTATAGGGGCATTAT-G
* * * *
26816058 GTCATTTAACCTTATAAGGGTATTACG
1 GTCATTTTACCTTATAGGGGCATTATG
* * * *
26816085 ATAATTTTATCTTATAGGGGCATTAAG
1 GTCATTTTACCTTATAGGGGCATTATG
26816112 GTCATTTTAC
1 GTCATTTTAC
26816122 AAATATTACG
Statistics
Matches: 68, Mismatches: 20, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
26 5 0.07
27 63 0.93
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCTTATAGGGGCATTATG
Found at i:26834171 original size:20 final size:21
Alignment explanation
Indices: 26834132--26834175 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
26834122 TGAACATAGG
26834132 ATAGGATATAATTGGCATGCCA
1 ATAGGATATAATTGGCATG-CA
*
26834154 ATAGGTTAT-ATT-GCATGCA
1 ATAGGATATAATTGGCATGCA
26834173 ATA
1 ATA
26834176 TAAGATTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 5 0.24
21 3 0.14
22 8 0.38
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.32
Consensus pattern (21 bp):
ATAGGATATAATTGGCATGCA
Found at i:26842713 original size:30 final size:29
Alignment explanation
Indices: 26842677--26842919 Score: 132
Period size: 30 Copynumber: 8.1 Consensus size: 29
26842667 ATCGATAGTT
*
26842677 GATAGTCGAAGCTATCCCTTTTCATAATTC
1 GATAGTCGAA-CCATCCCTTTTCATAATTC
* *
26842707 GATAGTCGAAGCTATCCCTTTTCATAATTTT
1 GATAGTCGAA-CCATCCCTTTTCATAA-TTC
* * * * **
26842738 GATGGCCGTTACCATCCCTTTTCGTTGTT-
1 GATAGTCG-AACCATCCCTTTTCATAATTC
* * * * *
26842767 AATGGTCGTCACCATCCTTTTTCATAATTT
1 GATAGTCG-AACCATCCCTTTTCATAATTC
* * * *
26842797 GATAGCCAGAGCTATCCCTTTTCATGATTC
1 GATAGTC-GAACCATCCCTTTTCATAATTC
* * * *
26842827 AACAGACGAACCCATCCCTTTTCGT-ATATC
1 GATAGTCGAA-CCATCCCTTTTCATAAT-TC
* *
26842857 GATGGTCGTCACCATCCCTTTTCATAATTC
1 GATAGTCG-AACCATCCCTTTTCATAATTC
* *
26842887 AATAGTCGAAACTATCCCTTTTCATTAA-TC
1 GATAGTCG-AACCATCCCTTTTCA-TAATTC
26842917 GAT
1 GAT
26842920 GATCATCGAT
Statistics
Matches: 162, Mismatches: 42, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
29 26 0.16
30 108 0.67
31 27 0.17
32 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (29 bp):
GATAGTCGAACCATCCCTTTTCATAATTC
Found at i:26842758 original size:31 final size:31
Alignment explanation
Indices: 26842720--26842796 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 31
26842710 AGTCGAAGCT
* *
26842720 ATCCCTTTTCATAATTTTGATGGCCGTTACC
1 ATCCCTTTTCATAATTTTAATGGCCGTCACC
* * *
26842751 ATCCCTTTTCGT--TGTTAATGGTCGTCACC
1 ATCCCTTTTCATAATTTTAATGGCCGTCACC
*
26842780 ATCCTTTTTCATAATTT
1 ATCCCTTTTCATAATTT
26842797 GATAGCCAGA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
29 23 0.64
31 13 0.36
ACGTcount: A:0.18, C:0.25, G:0.12, T:0.45
Consensus pattern (31 bp):
ATCCCTTTTCATAATTTTAATGGCCGTCACC
Found at i:26842862 original size:90 final size:89
Alignment explanation
Indices: 26842690--26842911 Score: 232
Period size: 90 Copynumber: 2.5 Consensus size: 89
26842680 AGTCGAAGCT
* * * * ** ** * *
26842690 ATCCCTTTTCATAATTCGATAGTCGAAGCTATCCCTTTTCATAATTTTGATGGCCGTTA-CCATC
1 ATCCCTTTTCATAATTCAATAGCCGAAACTATCCCTTTTCATGA-TTCAACAGACG-AACCCATC
* *
26842754 CCTTTTCGTTGTTAATGGTCGTCACC
64 CCTTTTCGTTATCAATGGTCGTCACC
* ** *
26842780 ATCCTTTTTCATAATTTGATAGCC-AGAGCTATCCCTTTTCATGATTCAACAGACGAACCCATCC
1 ATCCCTTTTCATAATTCAATAGCCGA-AACTATCCCTTTTCATGATTCAACAGACGAACCCATCC
*
26842844 CTTTTCGTATATCGATGGTCGTCACC
65 CTTTTCGT-TATCAATGGTCGTCACC
*
26842870 ATCCCTTTTCATAATTCAATAGTCGAAACTATCCCTTTTCAT
1 ATCCCTTTTCATAATTCAATAGCCGAAACTATCCCTTTTCAT
26842912 TAATCGATGA
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
88 1 0.01
89 21 0.19
90 87 0.79
91 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (89 bp):
ATCCCTTTTCATAATTCAATAGCCGAAACTATCCCTTTTCATGATTCAACAGACGAACCCATCCC
TTTTCGTTATCAATGGTCGTCACC
Found at i:26842918 original size:60 final size:59
Alignment explanation
Indices: 26842690--26842920 Score: 182
Period size: 60 Copynumber: 3.9 Consensus size: 59
26842680 AGTCGAAGCT
* * * *
26842690 ATCCCTTTTCATAATTCGATAGTCGAAGCTATCCCTTTTCATAATTTTGATGGCCGTTACC
1 ATCCCTTTTCATAATTCAATAGTCGAAACCATCCCTTTTCATAA-TTCGATGGCCG-TACC
* ** * ** * * * *
26842751 ATCCCTTTTCGTTGTT-AATGGTCGTCACCATCCTTTTTCATAATTTGATAGCCAG-AGCT
1 ATCCCTTTTCATAATTCAATAGTCGAAACCATCCCTTTTCATAATTCGATGGCC-GTA-CC
* * * * * *
26842810 ATCCCTTTTCATGATTCAACAGACGAACCCATCCCTTTTCGT-ATATCGATGGTCGTCACC
1 ATCCCTTTTCATAATTCAATAGTCGAAACCATCCCTTTTCATAAT-TCGATGGCCGT-ACC
*
26842870 ATCCCTTTTCATAATTCAATAGTCGAAACTATCCCTTTTCATTAA-TCGATG
1 ATCCCTTTTCATAATTCAATAGTCGAAACCATCCCTTTTCA-TAATTCGATG
26842921 ATCATCGATA
Statistics
Matches: 129, Mismatches: 33, Indels: 17
0.72 0.18 0.09
Matches are distributed among these distances:
58 1 0.01
59 26 0.20
60 86 0.67
61 15 0.12
62 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.38
Consensus pattern (59 bp):
ATCCCTTTTCATAATTCAATAGTCGAAACCATCCCTTTTCATAATTCGATGGCCGTACC
Found at i:26847560 original size:8 final size:8
Alignment explanation
Indices: 26847547--26847577 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
26847537 TTATCAGCTC
26847547 TTATTATT
1 TTATTATT
26847555 TTATTATT
1 TTATTATT
26847563 TTATTA-T
1 TTATTATT
26847570 TTATTATT
1 TTATTATT
26847578 CTGAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TTATTATT
Found at i:26849207 original size:20 final size:20
Alignment explanation
Indices: 26849147--26849208 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
26849137 TACTAATTAG
* * *
26849147 AACATATTTAATAGACTTAA
1 AACATATTTAACACACATAA
* **
26849167 GACATATTAATAACATGCATAA
1 AACATATT--TAACACACATAA
26849189 AACATATTTAACACACATAA
1 AACATATTTAACACACATAA
26849209 TTAAATTTGT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 17 0.53
22 15 0.47
ACGTcount: A:0.52, C:0.15, G:0.05, T:0.29
Consensus pattern (20 bp):
AACATATTTAACACACATAA
Found at i:26849680 original size:26 final size:27
Alignment explanation
Indices: 26849630--26849680 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
26849620 ACTTCATAAA
*
26849630 TTCTCTTTGAGTTTTCTTTTTAAGAAT
1 TTCTCTTTGAGTTTTCTTTTGAAGAAT
26849657 TTCTC-TTGAG-TTTCTTTTAGAAGA
1 TTCTCTTTGAGTTTTCTTTT-GAAGA
26849681 GTTTTAGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 9 0.41
27 5 0.23
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.55
Consensus pattern (27 bp):
TTCTCTTTGAGTTTTCTTTTGAAGAAT
Found at i:26852479 original size:14 final size:12
Alignment explanation
Indices: 26852453--26852499 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 12
26852443 TCTATAAAAA
26852453 TAAAATAAAATAT
1 TAAAA-AAAATAT
26852466 TAAAAAAATGATAT
1 TAAAAAAA--ATAT
26852480 TAAAATAAAATAT
1 TAAAA-AAAATAT
26852493 TAAAAAA
1 TAAAAAA
26852500 TAAGGTTAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 5 0.16
13 14 0.45
14 9 0.29
15 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (12 bp):
TAAAAAAAATAT
Found at i:26852508 original size:26 final size:27
Alignment explanation
Indices: 26852453--26852508 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
26852443 TCTATAAAAA
* *
26852453 TAAAATAAAATATTAAAAAAATGATAT
1 TAAAATAAAATATTAAAAAAATAAGAT
*
26852480 TAAAATAAAATATT-AAAAAATAAGGT
1 TAAAATAAAATATTAAAAAAATAAGAT
26852506 TAA
1 TAA
26852509 CTTTAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (27 bp):
TAAAATAAAATATTAAAAAAATAAGAT
Found at i:26859251 original size:77 final size:77
Alignment explanation
Indices: 26859131--26859273 Score: 250
Period size: 77 Copynumber: 1.9 Consensus size: 77
26859121 ATTCCCATAC
* * *
26859131 TTTTTTAGGGGGTTTCTTAAAGTATTCATTAGGGCAAGTCTAGTGATTAATCCTTCACGTTCTGT
1 TTTTTTAGGGGATTTCTTAAAGTAATCATTAGGGCAAGCCTAGTGATTAATCCTTCACGTTCTGT
26859196 AAGCTCATACTT
66 AAGCTCATACTT
*
26859208 TTTTTTATGGGATTTCTTAAAGTAATCATTAGGGCAAGCCTAGTGATTAATCCTTCACGTTCTGT
1 TTTTTTAGGGGATTTCTTAAAGTAATCATTAGGGCAAGCCTAGTGATTAATCCTTCACGTTCTGT
26859273 A
66 A
26859274 GACCCATTAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 62 1.00
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.41
Consensus pattern (77 bp):
TTTTTTAGGGGATTTCTTAAAGTAATCATTAGGGCAAGCCTAGTGATTAATCCTTCACGTTCTGT
AAGCTCATACTT
Found at i:26859884 original size:22 final size:23
Alignment explanation
Indices: 26859843--26859885 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
26859833 AATTAATAAC
26859843 ATATAATTGATATATCATATTTA
1 ATATAATTGATATATCATATTTA
26859866 ATAT-ATTAGATA-ATCATATT
1 ATATAATT-GATATATCATATT
26859886 GTTTTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.47
Consensus pattern (23 bp):
ATATAATTGATATATCATATTTA
Found at i:26860739 original size:26 final size:27
Alignment explanation
Indices: 26860708--26860760 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
26860698 CATTAATTAC
26860708 TTTAATTAAAAATGT-AATA-TTAAAAT
1 TTTAATTAAAAAT-TAAATATTTAAAAT
*
26860734 TTTAATTAAATATTAAATATTTAAAAT
1 TTTAATTAAAAATTAAATATTTAAAAT
26860761 CGCATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 1 0.04
26 16 0.67
27 7 0.29
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (27 bp):
TTTAATTAAAAATTAAATATTTAAAAT
Found at i:26861203 original size:30 final size:30
Alignment explanation
Indices: 26861169--26861231 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
26861159 TTCCAGAGCA
*
26861169 TGGGTTGTTCGGAAAATTACTCGAAGGGAT
1 TGGGTTGTTCGGAAAATTACTCGAAGAGAT
*
26861199 TGGGTTGTTTGGAAAATTACTCGAAGAGAT
1 TGGGTTGTTCGGAAAATTACTCGAAGAGAT
26861229 TGG
1 TGG
26861232 ATCATCTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.08, G:0.33, T:0.32
Consensus pattern (30 bp):
TGGGTTGTTCGGAAAATTACTCGAAGAGAT
Found at i:26865031 original size:41 final size:41
Alignment explanation
Indices: 26864974--26865124 Score: 257
Period size: 41 Copynumber: 3.7 Consensus size: 41
26864964 TTAATTATTT
26864974 CCTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
1 CCTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
*
26865015 CCTGAATTGCACATACGTGCCCCTGTTTGTACTTCTGTACC
1 CCTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
* * * *
26865056 CCTAAATTGCACATACGTGCCCCTGTTTGCACTTTGATACC
1 CCTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
26865097 CCTGAATTGCACATACGTGCCCCTGTTT
1 CCTGAATTGCACATACGTGCCCCTGTTT
26865125 ACACTTTGGT
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (41 bp):
CCTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
Found at i:26865039 original size:21 final size:21
Alignment explanation
Indices: 26864974--26865121 Score: 110
Period size: 21 Copynumber: 7.2 Consensus size: 21
26864964 TTAATTATTT
26864974 CCTGAATTGCACATACGTGCC
1 CCTGAATTGCACATACGTGCC
* * * *
26864995 CCTG-TTTGTAC-TTCGGTACC
1 CCTGAATTGCACATAC-GTGCC
26865015 CCTGAATTGCACATACGTGCC
1 CCTGAATTGCACATACGTGCC
* * * *
26865036 CCTG-TTTGTAC-TTCTGTACC
1 CCTGAATTGCACATAC-GTGCC
*
26865056 CCTAAATTGCACATACGTGCC
1 CCTGAATTGCACATACGTGCC
* ** *
26865077 CCTG-TTTGCAC-TTTGATACC
1 CCTGAATTGCACATACG-TGCC
26865097 CCTGAATTGCACATACGTGCC
1 CCTGAATTGCACATACGTGCC
26865118 CCTG
1 CCTG
26865122 TTTACACTTT
Statistics
Matches: 92, Mismatches: 26, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
19 6 0.07
20 38 0.41
21 42 0.46
22 6 0.07
ACGTcount: A:0.19, C:0.32, G:0.18, T:0.31
Consensus pattern (21 bp):
CCTGAATTGCACATACGTGCC
Found at i:26865087 original size:20 final size:20
Alignment explanation
Indices: 26864980--26865124 Score: 98
Period size: 20 Copynumber: 7.1 Consensus size: 20
26864970 ATTTCCTGAA
26864980 TTGCACATACGTGCCCCTGT
1 TTGCACATACGTGCCCCTGT
* * * *
26865000 TTGTAC-TTCGGTACCCCTGAA
1 TTGCACATAC-GTGCCCCTG-T
26865021 TTGCACATACGTGCCCCTGT
1 TTGCACATACGTGCCCCTGT
* * * **
26865041 TTGTAC-TTCTGTACCCCTAAA
1 TTGCACATAC-GTGCCCCT-GT
26865062 TTGCACATACGTGCCCCTGT
1 TTGCACATACGTGCCCCTGT
** * *
26865082 TTGCAC-TTTGATACCCCTGAA
1 TTGCACATACG-TGCCCCTG-T
26865103 TTGCACATACGTGCCCCTGT
1 TTGCACATACGTGCCCCTGT
26865123 TT
1 TT
26865125 ACACTTTGGT
Statistics
Matches: 90, Mismatches: 26, Indels: 18
0.67 0.19 0.13
Matches are distributed among these distances:
19 6 0.07
20 40 0.44
21 38 0.42
22 6 0.07
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.33
Consensus pattern (20 bp):
TTGCACATACGTGCCCCTGT
Found at i:26868717 original size:35 final size:35
Alignment explanation
Indices: 26868673--26868740 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
26868663 AATTGTCATT
* *
26868673 ACAGTTCTATTCTATTACAACTTTATTCCATTACA
1 ACAGCTCTATTCCATTACAACTTTATTCCATTACA
* *
26868708 ACAGCTCTATTCCATTATAGCTTTATTCCATTA
1 ACAGCTCTATTCCATTACAACTTTATTCCATTA
26868741 TAGTGAACCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.29, C:0.24, G:0.04, T:0.43
Consensus pattern (35 bp):
ACAGCTCTATTCCATTACAACTTTATTCCATTACA
Found at i:26868734 original size:16 final size:16
Alignment explanation
Indices: 26868710--26868743 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26868700 CCATTACAAC
26868710 AGCTCTATTCCATTAT
1 AGCTCTATTCCATTAT
*
26868726 AGCTTTATTCCATTAT
1 AGCTCTATTCCATTAT
26868742 AG
1 AG
26868744 TGAACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (16 bp):
AGCTCTATTCCATTAT
Found at i:26883072 original size:19 final size:19
Alignment explanation
Indices: 26883048--26883086 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26883038 AATAAATTAC
*
26883048 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
26883067 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
26883086 T
1 T
26883087 GCTAGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:26883141 original size:54 final size:53
Alignment explanation
Indices: 26883027--26883128 Score: 161
Period size: 54 Copynumber: 1.9 Consensus size: 53
26883017 GAGTAAGTAT
* *
26883027 TTAGTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAGTTAA
1 TTAGTTGCTAGAATAAATTACTCATCTTAGTTAATTGAGTTCAACTTAGTTAA
26883080 TTAAGTTGCTAGAATAAATTACTCATCTTAGTTAATT-ACGTTCAACTTA
1 TT-AGTTGCTAGAATAAATTACTCATCTTAGTTAATTGA-GTTCAACTTA
26883129 TTTCACTTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
53 3 0.07
54 42 0.93
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (53 bp):
TTAGTTGCTAGAATAAATTACTCATCTTAGTTAATTGAGTTCAACTTAGTTAA
Found at i:26886154 original size:28 final size:28
Alignment explanation
Indices: 26886104--26886157 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
26886094 ATCATTACAA
* *
26886104 TGTGGGCCTTAGCCCATTTCAGTAATAG
1 TGTGGGCCTTAGCCCAATACAGTAATAG
*
26886132 TGTGGGCCTTAGCTCAATACAGTAAT
1 TGTGGGCCTTAGCCCAATACAGTAAT
26886158 TAATACAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (28 bp):
TGTGGGCCTTAGCCCAATACAGTAATAG
Found at i:26886653 original size:81 final size:80
Alignment explanation
Indices: 26886526--26886899 Score: 443
Period size: 81 Copynumber: 4.6 Consensus size: 80
26886516 GGTATAACAA
* * *
26886526 TCATTTTACCCT-TGGCGGTATTTCGCTCATTTTA-CCTCAT-AGGGGTATTTAAGTCATTTTAC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCT-ATGA-GGGTATTT-GGTCATTTTAC
* *
26886588 CATATAGGGGTATTTTC-G
63 CCTATGGGGGTA-TTTCAG
* * * *
26886606 TCATTCTATCCTATGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTTGGTCATTTTATCC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTA-TTTGGTCATTTTACCC
* **
26886671 TATGGGTGTATTTTGG
65 TATGGGGGTATTTCAG
* ** * *
26886687 TCATTTTACCCTATAGGGGTATTTTAGTCATTTTACCTTATGAGGGTATTTTGATCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTA-TTTGGTCATTTTACCC
26886752 TATGGGGGTATTTCAG
65 TATGGGGGTATTTCAG
* *
26886768 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTT-GGTCATTTTACCC
26886833 TATGGGGGTATTTCAG
65 TATGGGGGTATTTCAG
* * *
26886849 TCATTTTACCCTATGAGGGTATTTCGGTCATTCTATCCTAT-AGTGGTATTT
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAG-GGTATTT
26886900 CAGCCATAAC
Statistics
Matches: 256, Mismatches: 31, Indels: 13
0.85 0.10 0.04
Matches are distributed among these distances:
80 17 0.07
81 232 0.91
82 7 0.03
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (80 bp):
TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTGGTCATTTTACCCT
ATGGGGGTATTTCAG
Found at i:26886873 original size:27 final size:27
Alignment explanation
Indices: 26886526--26886902 Score: 380
Period size: 27 Copynumber: 14.0 Consensus size: 27
26886516 GGTATAACAA
26886526 TCATTTTACCCT-TG-GCGGTATTTC-G
1 TCATTTTACCCTATGAG-GGTATTTCAG
*
26886551 CTCATTTTA-CCTCAT-AGGGGTATTTAAG
1 -TCATTTTACCCT-ATGA-GGGTATTTCAG
*
26886579 TCATTTTACCATAT-AGGGGTATTTTC-G
1 TCATTTTACCCTATGA-GGGTA-TTTCAG
* * * **
26886606 TCATTCTATCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGAGGGTATTTCAG
**
26886633 TCATTTTACCCTATGAGGGTATTTTGG
1 TCATTTTACCCTATGAGGGTATTTCAG
* **
26886660 TCATTTTATCCTATG-GGTGTATTTTGG
1 TCATTTTACCCTATGAGG-GTATTTCAG
*
26886687 TCATTTTACCCTAT-AGGGGTATTTTAG
1 TCATTTTACCCTATGA-GGGTATTTCAG
* *
26886714 TCATTTTACCTTATGAGGGTATTT-TG
1 TCATTTTACCCTATGAGGGTATTTCAG
*
26886740 ATCATTTTACCCTATGGGGGTATTTCAG
1 -TCATTTTACCCTATGAGGGTATTTCAG
*
26886768 TCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGAGGGTATTTCAG
* *
26886795 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCAG
*
26886822 TCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGAGGGTATTTCAG
*
26886849 TCATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCAG
* *
26886876 TCATTCTATCCTAT-AGTGGTATTTCAG
1 TCATTTTACCCTATGAG-GGTATTTCAG
26886903 CCATAACAGT
Statistics
Matches: 309, Mismatches: 26, Indels: 31
0.84 0.07 0.08
Matches are distributed among these distances:
25 3 0.01
26 16 0.05
27 279 0.90
28 11 0.04
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCAG
Found at i:26887525 original size:24 final size:24
Alignment explanation
Indices: 26887470--26887530 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
26887460 AAATCCCAAT
* *
26887470 ATTCTCTCCTCAAATCTCTCCAAAT
1 ATTC-CTCCTCAAATCACTCCAAAG
* **
26887495 ATCCCTCCTCAAATCACTCCACCG
1 ATTCCTCCTCAAATCACTCCAAAG
26887519 ATTCCTCCTCAA
1 ATTCCTCCTCAA
26887531 CTCCCCCAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.26, C:0.43, G:0.02, T:0.30
Consensus pattern (24 bp):
ATTCCTCCTCAAATCACTCCAAAG
Found at i:26896702 original size:3 final size:3
Alignment explanation
Indices: 26896694--26896757 Score: 110
Period size: 3 Copynumber: 21.3 Consensus size: 3
26896684 AAAACTCGCT
* *
26896694 TTA TTA TTA TTA TAA TTA TTA TTA TAA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26896742 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
26896758 CAAATTTAGC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:26900140 original size:51 final size:51
Alignment explanation
Indices: 26900024--26900257 Score: 216
Period size: 51 Copynumber: 4.6 Consensus size: 51
26900014 TATCATTCGA
* * * * *
26900024 TACAGGTAGTAGCCTTCACATAGTACTACACACGTGATCA--AACT-TTTCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTAA-TATCT-GG
* *
26900074 TTCACGTAGTAGCCTG-AGCATAGTACTACACATGTGACCATTAATATCTGA
1 TACACGTAGTAGCCTGCA-CATAGTACTACACATGTGACCATTAATATCTGG
* *
26900125 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGA--AACTAT-TCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATTAA-TATCT-GG
* * * * *
26900176 TACGCATAGTAGCCTGCACATAGTAATACACATGTGACC-TATCAT-TCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT-TAATATCTGG
26900226 TACACGTAGTAGCCTGCACATAGTACTACACA
1 TACACGTAGTAGCCTGCACATAGTACTACACA
26900258 CNNNNNNNNN
Statistics
Matches: 151, Mismatches: 21, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
49 1 0.01
50 69 0.46
51 73 0.48
52 8 0.05
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTAATATCTGG
Found at i:26900231 original size:101 final size:100
Alignment explanation
Indices: 26900014--26900258 Score: 343
Period size: 101 Copynumber: 2.4 Consensus size: 100
26900004 ATTTAACTAT
* * * *
26900014 TATCATT-CGATACAGGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTTTTCGGTTCA
1 TATCATTCCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTATTCGGTACA
* *
26900078 CGTAGTAGCCTGAGCATAGTACTACACATGTGACC
66 CATAGTAGCCTGAGCATAGTAATACACATGTGACC
* *
26900113 -ATTAATATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATTCGGT
1 TA-TCAT-TCCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATC-AAACTATTCGGT
*
26900177 ACGCATAGTAGCCTGCA-CATAGTAATACACATGTGACC
63 ACACATAGTAGCCTG-AGCATAGTAATACACATGTGACC
*
26900215 TATCATTCCGGTACACGTAGTAGCCTGCACATAGTACTACACAC
1 TATCATTCCGATACACGTAGTAGCCTGCACATAGTACTACACAC
26900259 NNNNNNNNNN
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
98 1 0.01
99 3 0.02
100 1 0.01
101 75 0.59
102 46 0.36
103 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TATCATTCCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTATTCGGTACA
CATAGTAGCCTGAGCATAGTAATACACATGTGACC
Found at i:26905742 original size:50 final size:51
Alignment explanation
Indices: 26905613--26905757 Score: 220
Period size: 51 Copynumber: 2.9 Consensus size: 51
26905603 TATTATCATT
*
26905613 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCATTAATATC
1 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGACCATTAATATC
* * * *
26905664 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCTTTCAT-TC
1 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGACCATTAATATC
* *
26905714 CGGTATACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
1 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
26905758 CACTTTAACT
Statistics
Matches: 85, Mismatches: 9, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
50 41 0.48
51 44 0.52
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (51 bp):
CGATACACGTAGTAGCCTACACATAGTACTACACACGTGACCATTAATATC
Found at i:26914740 original size:137 final size:138
Alignment explanation
Indices: 26914493--26914767 Score: 340
Period size: 137 Copynumber: 2.0 Consensus size: 138
26914483 AGCTGTAAAA
* * *
26914493 TGGGTCTGCTCACACAAGCTTACGGTCGAAATATAAGCTACTCGATGCTGCTCACACAAGCTATC
1 TGGGTATGCTCACACAAGCTTACGGTCGAAACATAAGCTACACGATGCTGCTCACACAAGCTATC
* * * * *
26914558 GAGTATTCGCAACTAATGCTGGACCTCAGCCATCAGTAGAACATTCA-AGACCAGCACCCAAATC
66 GAGTATTCACAACTAATGCTGGAACTCAACCACCAGTAGAACATTCAGA-ACCAGCACCCAAACC
26914622 ATGATAACC
130 ATGATAACC
* * * *
26914631 TGGGTATGCTCACAGAAGCTGT-CGGTCGGAACGT-AGCTACACGATGCTGCTCACACAAGCTGT
1 TGGGTATGCTCACACAAGCT-TACGGTCGAAACATAAGCTACACGATGCTGCTCACACAAGCTAT
* * * * * *
26914694 TGAGTATTCACTACTAATGTTGGAACTCAACCACCGGTAGGACATTCAGAACCAGCACTCAAACC
65 CGAGTATTCACAACTAATGCTGGAACTCAACCACCAGTAGAACATTCAGAACCAGCACCCAAACC
*
26914759 ATGGTAACC
130 ATGATAACC
26914768 CTAATGACAT
Statistics
Matches: 116, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
137 87 0.75
138 28 0.24
139 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (138 bp):
TGGGTATGCTCACACAAGCTTACGGTCGAAACATAAGCTACACGATGCTGCTCACACAAGCTATC
GAGTATTCACAACTAATGCTGGAACTCAACCACCAGTAGAACATTCAGAACCAGCACCCAAACCA
TGATAACC
Found at i:26919701 original size:41 final size:41
Alignment explanation
Indices: 26919642--26919721 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
26919632 CTTTTCAGGT
* * * *
26919642 AAACCTTAAAATTCGGACCGGACTCAACATTCGGAGAATCA
1 AAACCTCAAAATTAGGACCAGACTCAACATTCGAAGAATCA
* *
26919683 AAACCTCAAAATTAGGACCAGACTTAATATTCGAAGAAT
1 AAACCTCAAAATTAGGACCAGACTCAACATTCGAAGAAT
26919722 AACCCTGGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.21
Consensus pattern (41 bp):
AAACCTCAAAATTAGGACCAGACTCAACATTCGAAGAATCA
Found at i:26920832 original size:48 final size:48
Alignment explanation
Indices: 26920776--26920868 Score: 168
Period size: 48 Copynumber: 1.9 Consensus size: 48
26920766 CCTTCCTTGC
* *
26920776 GTCTGTGATTTTTGCTCTGTAAGTTGCTACCTTCTCCTCTCTTTTTGT
1 GTCTGTGATTTTTGCTCTGTAAGCTGCTACCTTCTCATCTCTTTTTGT
26920824 GTCTGTGATTTTTGCTCTGTAAGCTGCTACCTTCTCATCTCTTTT
1 GTCTGTGATTTTTGCTCTGTAAGCTGCTACCTTCTCATCTCTTTT
26920869 CTTTGAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.10, C:0.24, G:0.16, T:0.51
Consensus pattern (48 bp):
GTCTGTGATTTTTGCTCTGTAAGCTGCTACCTTCTCATCTCTTTTTGT
Found at i:26924897 original size:12 final size:12
Alignment explanation
Indices: 26924880--26924905 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26924870 TCTTTTATCC
26924880 AAACGCCGCTAA
1 AAACGCCGCTAA
26924892 AAACGCCGCTAA
1 AAACGCCGCTAA
26924904 AA
1 AA
26924906 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:26925144 original size:50 final size:50
Alignment explanation
Indices: 26925016--26925202 Score: 204
Period size: 50 Copynumber: 3.8 Consensus size: 50
26925006 AATAATAACA
* * *
26925016 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* *
26925065 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * ** *
26925115 TGCCCATGCCATGTCCTAGACATGGTCTT--ATGGAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT-G-GGAGTTCTCATATCGG
*
26925165 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAG
26925203 CACCGAATCA
Statistics
Matches: 115, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
48 6 0.05
49 39 0.34
50 67 0.58
51 1 0.01
52 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:26925406 original size:28 final size:28
Alignment explanation
Indices: 26925346--26925399 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
26925336 CAGTAACAGT
*
26925346 ACAGTGTGGGCCTTAGCCCAATACAAAA
1 ACAGTGTGGGCCTAAGCCCAATACAAAA
*
26925374 ACAGTGTGGGCCTAAGCCCGATACAA
1 ACAGTGTGGGCCTAAGCCCAATACAA
26925400 TATCAGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.17
Consensus pattern (28 bp):
ACAGTGTGGGCCTAAGCCCAATACAAAA
Found at i:26925685 original size:32 final size:32
Alignment explanation
Indices: 26925637--26925851 Score: 204
Period size: 32 Copynumber: 6.7 Consensus size: 32
26925627 TACAGTAATG
* *
26925637 TGATTGGCACAAAGCCATCAGTAGTAGTGATA
1 TGATCGGCACAAAGCCATCAGTAATAGTGATA
* * * *
26925669 TGATCGGCACACAGCCATCAGTAATGGTAACA
1 TGATCGGCACAAAGCCATCAGTAATAGTGATA
* *
26925701 TGATCGACACAAAGCCATCAGTAGTAGTGATA
1 TGATCGGCACAAAGCCATCAGTAATAGTGATA
* *
26925733 TGATCGGCACACAA-CCATCAGTAACAGTGAAA
1 TGATCGGCACA-AAGCCATCAGTAATAGTGATA
* * *
26925765 TGATCGGCATACAA-CCATCGGTAAT-GATAATA
1 TGATCGGCACA-AAGCCATCAGTAATAG-TGATA
* **
26925797 TGATCGGTACAAAGCCATCAGTAACGGT-ACTA
1 TGATCGGCACAAAGCCATCAGTAATAGTGA-TA
* *
26925829 TGATCGACACAAAGCCATTAGTA
1 TGATCGGCACAAAGCCATCAGTA
26925852 GCATCGTAGA
Statistics
Matches: 150, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
31 4 0.03
32 143 0.95
33 3 0.02
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (32 bp):
TGATCGGCACAAAGCCATCAGTAATAGTGATA
Found at i:26925722 original size:64 final size:64
Alignment explanation
Indices: 26925644--26925852 Score: 255
Period size: 64 Copynumber: 3.3 Consensus size: 64
26925634 ATGTGATTGG
*
26925644 CACAAAGCCATCAGTAGTAGTGATATGATCGGCACACAGCCATCAGTAATGGTAACATGATCGA
1 CACAAAGCCATCAGTAGTAGTGATATGATCGGCACACAGCCATCAGTAACGGTAACATGATCGA
* * *
26925708 CACAAAGCCATCAGTAGTAGTGATATGATCGGCACACAACCATCAGTAACAGTGAA-ATGATCGG
1 CACAAAGCCATCAGTAGTAGTGATATGATCGGCACACAGCCATCAGTAACGGT-AACATGATCGA
* * * * * *
26925772 CATACAA-CCATCGGTAAT-GATAATATGATCGGTACAAAGCCATCAGTAACGGT-ACTATGATC
1 CACA-AAGCCATCAGTAGTAG-TGATATGATCGGCACACAGCCATCAGTAACGGTAAC-ATGATC
26925834 GA
63 GA
*
26925836 CACAAAGCCATTAGTAG
1 CACAAAGCCATCAGTAG
26925853 CATCGTAGAA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
62 1 0.01
63 3 0.02
64 114 0.93
65 4 0.03
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (64 bp):
CACAAAGCCATCAGTAGTAGTGATATGATCGGCACACAGCCATCAGTAACGGTAACATGATCGA
Found at i:26925809 original size:96 final size:96
Alignment explanation
Indices: 26925637--26925851 Score: 254
Period size: 96 Copynumber: 2.2 Consensus size: 96
26925627 TACAGTAATG
* ** * * *
26925637 TGATTGGCACAAAGCCATCAGTAGTAGTGATATGATCGGCACACAGCCATCAGTAATGGTAACAT
1 TGATCGGCACAAAGCCATCAGTAACAGTGAAATGATCGGCACACAACCATCAGTAATGATAACAT
26925702 GATCGACACAAAGCCATCAGTAGTAGTGATA
66 GATCGACACAAAGCCATCAGTAGTAGTGATA
* * *
26925733 TGATCGGCACACAA-CCATCAGTAACAGTGAAATGATCGGCATACAACCATCGGTAATGATAATA
1 TGATCGGCACA-AAGCCATCAGTAACAGTGAAATGATCGGCACACAACCATCAGTAATGATAACA
** ***
26925797 TGATCGGTACAAAGCCATCAGTAACGGT-ACTA
65 TGATCGACACAAAGCCATCAGTAGTAGTGA-TA
* *
26925829 TGATCGACACAAAGCCATTAGTA
1 TGATCGGCACAAAGCCATCAGTA
26925852 GCATCGTAGA
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
95 3 0.03
96 95 0.95
97 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (96 bp):
TGATCGGCACAAAGCCATCAGTAACAGTGAAATGATCGGCACACAACCATCAGTAATGATAACAT
GATCGACACAAAGCCATCAGTAGTAGTGATA
Found at i:26925927 original size:27 final size:26
Alignment explanation
Indices: 26925895--26925959 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
26925885 AGCAAAGCTG
26925895 CCAGTAATAGTATATGTGGCCA-AGCCA
1 CCAGTAATAGTAT-TGTGG-CAGAGCCA
* *
26925922 CTAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAATAGT-ATTGTGGCAGAGCCA
26925949 CCAGT-ATAGTA
1 CCAGTAATAGTA
26925960 CTTCCTCCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
25 1 0.03
26 6 0.19
27 23 0.72
28 2 0.06
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (26 bp):
CCAGTAATAGTATTGTGGCAGAGCCA
Found at i:26926066 original size:24 final size:25
Alignment explanation
Indices: 26926034--26926080 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
26926024 ATCAGTCCTT
26926034 CAAATCACAGACAAATCAGTCATAC
1 CAAATCACAGACAAATCAGTCATAC
26926059 CAAA-CACAGACAAATCAGTCAT
1 CAAATCACAGACAAATCAGTCAT
26926081 TTAACCATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.49, C:0.28, G:0.09, T:0.15
Consensus pattern (25 bp):
CAAATCACAGACAAATCAGTCATAC
Found at i:26926163 original size:26 final size:27
Alignment explanation
Indices: 26926127--26926216 Score: 89
Period size: 26 Copynumber: 3.4 Consensus size: 27
26926117 GGCAAAAATA
26926127 GTCA-TTTACCC-ACCA-GGGAATTACG
1 GTCATTTTACCCTA-CAGGGGAATTACG
*
26926152 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGAATTACG
* * ** *
26926179 GT-ATTCTACCCTATAGGGGTGTTTCG
1 GTCATTTTACCCTACAGGGGAATTACG
26926205 GTCATTTTACCC
1 GTCATTTTACCC
26926217 ATCGAGGGTA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
25 4 0.07
26 30 0.56
27 20 0.37
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGAATTACG
Found at i:26934045 original size:18 final size:18
Alignment explanation
Indices: 26934022--26934058 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26934012 ACGGGATTGA
26934022 TTATTCGTCAATTATTCG
1 TTATTCGTCAATTATTCG
26934040 TTATTCGTCAATTATTCG
1 TTATTCGTCAATTATTCG
26934058 T
1 T
26934059 ACCCCGAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.16, G:0.11, T:0.51
Consensus pattern (18 bp):
TTATTCGTCAATTATTCG
Found at i:26946203 original size:15 final size:15
Alignment explanation
Indices: 26946183--26946211 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26946173 ATGTCTAATC
26946183 TGGTGCTATGACTAT
1 TGGTGCTATGACTAT
26946198 TGGTGCTATGACTA
1 TGGTGCTATGACTA
26946212 GTCACTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.38
Consensus pattern (15 bp):
TGGTGCTATGACTAT
Found at i:26955004 original size:21 final size:21
Alignment explanation
Indices: 26954973--26955018 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
26954963 GGAGAAAAAT
*
26954973 GAAAATGAAAAAGAAATTGAAA
1 GAAAATGAAAAAGAAAATG-AA
26954995 GAAAA-GAAAAAGAAAATGAA
1 GAAAATGAAAAAGAAAATGAA
26955015 GAAA
1 GAAA
26955019 GCGTGAGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.26
21 12 0.52
22 5 0.22
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.09
Consensus pattern (21 bp):
GAAAATGAAAAAGAAAATGAA
Found at i:26955124 original size:33 final size:32
Alignment explanation
Indices: 26955047--26955135 Score: 92
Period size: 33 Copynumber: 2.8 Consensus size: 32
26955037 AAATGTGAAT
* *
26955047 GAAACGAGTGTAAAAGAAAGAGAGCTTGAAAA
1 GAAACGAGTGAAAAAGAAAGAGAGCTTAAAAA
*
26955079 GAAAACAAGTGAAAAAGAGAA-AGAGCTTAAAAAA
1 G-AAACGAGTGAAAAAGA-AAGAGAGCTT-AAAAA
* *
26955113 GAAACGTGTGAAGAAG-AAGAGAG
1 GAAACGAGTGAAAAAGAAAGAGAG
26955136 TGCTCAAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
31 2 0.04
32 5 0.11
33 33 0.70
34 7 0.15
ACGTcount: A:0.56, C:0.06, G:0.28, T:0.10
Consensus pattern (32 bp):
GAAACGAGTGAAAAAGAAAGAGAGCTTAAAAA
Found at i:26971958 original size:295 final size:295
Alignment explanation
Indices: 26971426--26972010 Score: 1062
Period size: 295 Copynumber: 2.0 Consensus size: 295
26971416 AGACTCATCG
*
26971426 ATCATATAATCCTTGTAGATCGTTAAACCTCTCTGCTCCTGCACTGAGATTCATCATCGATTTTG
1 ATCATATAATCCTTGTAGATCGTTAAACCTCTCTGCTCCTGCACCGAGATTCATCATCGATTTTG
26971491 TTGTGTTATCGAGTAGTGTAAGTACATGAGAAGTATTGAGAATATTTTTTTCTCTTTATATTTTT
66 TTGTGTTATCGAGTAGTGTAAGTACATGAGAAGTATTGAGAATATTTTTTTCTCTTTATATTTTT
**
26971556 CCCTCATAGTTGAATGGTATTAAGATACTTTCATTCTTCATGTGTTGACATCTTGTACCTATGTT
131 CCCTCATAGCCGAATGGTATTAAGATACTTTCATTCTTCATGTGTTGACATCTTGTACCTATGTT
* **
26971621 CTTTGAAGGACCAAACGACGCCAATCTAGAAAATTATTAGTGTGACAACGAGGGCATCAAAGCCA
196 CTTTGAAGGACCAAACGACACCAATCTAGAAAACCATTAGTGTGACAACGAGGGCATCAAAGCCA
26971686 AGTTTTGATCTAAGGGTAAGTAGTTGGTGATATCA
261 AGTTTTGATCTAAGGGTAAGTAGTTGGTGATATCA
* * *
26971721 ATCATATAATCCTTGTAGATCGTTAAACTTCTCTGCTCCTTCACCGAGATTCATCATCGGTTTTG
1 ATCATATAATCCTTGTAGATCGTTAAACCTCTCTGCTCCTGCACCGAGATTCATCATCGATTTTG
26971786 TTGTGTTATCGAGTAGTGTAAGTACATGAGAAGTATTGAGAATATTTTTTTCTCTTTATATTTTT
66 TTGTGTTATCGAGTAGTGTAAGTACATGAGAAGTATTGAGAATATTTTTTTCTCTTTATATTTTT
26971851 CCCTCATAGCCGAATGGTATTAAGATACTTTCATTCTTCATGTGTTGACATCTTGTACCTATGTT
131 CCCTCATAGCCGAATGGTATTAAGATACTTTCATTCTTCATGTGTTGACATCTTGTACCTATGTT
* * *
26971916 CTTTGAAGGACCAAACGACACCAATCTAGAAAACCGTTAGTGTGACAATGAGGGCATCAAATCCA
196 CTTTGAAGGACCAAACGACACCAATCTAGAAAACCATTAGTGTGACAACGAGGGCATCAAAGCCA
26971981 AGTTTTGATCTAAGGGTAAGTAGTTGGTGA
261 AGTTTTGATCTAAGGGTAAGTAGTTGGTGA
26972011 GATTTATTTC
Statistics
Matches: 278, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
295 278 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (295 bp):
ATCATATAATCCTTGTAGATCGTTAAACCTCTCTGCTCCTGCACCGAGATTCATCATCGATTTTG
TTGTGTTATCGAGTAGTGTAAGTACATGAGAAGTATTGAGAATATTTTTTTCTCTTTATATTTTT
CCCTCATAGCCGAATGGTATTAAGATACTTTCATTCTTCATGTGTTGACATCTTGTACCTATGTT
CTTTGAAGGACCAAACGACACCAATCTAGAAAACCATTAGTGTGACAACGAGGGCATCAAAGCCA
AGTTTTGATCTAAGGGTAAGTAGTTGGTGATATCA
Found at i:26980622 original size:52 final size:52
Alignment explanation
Indices: 26980544--26981022 Score: 940
Period size: 52 Copynumber: 9.2 Consensus size: 52
26980534 TTAAAATAAG
26980544 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
26980596 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
26980648 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
26980700 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
26980752 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
26980804 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
26980856 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
26980908 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
**
26980960 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGATATCTT
1 AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
26981012 AAGCTGCTGTC
1 AAGCTGCTGTC
26981023 CATATACACA
Statistics
Matches: 425, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 425 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (52 bp):
AAGCTGCTGTCTATTATTGTTTGAGCTTCAACCGAGCTAGAAATGAGGTCTT
Found at i:26983102 original size:47 final size:47
Alignment explanation
Indices: 26983033--26983124 Score: 148
Period size: 47 Copynumber: 2.0 Consensus size: 47
26983023 ACAATAATGC
** * *
26983033 AGATAAACTGTTACTTTATAATATTTTGGACAAGCCACCACTTTTAT
1 AGATAAACTGCCACTTTATAATATTGTGAACAAGCCACCACTTTTAT
26983080 AGATAAACTGCCACTTTATAATATTGTGAACAAGCCACCACTTTT
1 AGATAAACTGCCACTTTATAATATTGTGAACAAGCCACCACTTTT
26983125 GTAAAAAAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (47 bp):
AGATAAACTGCCACTTTATAATATTGTGAACAAGCCACCACTTTTAT
Found at i:26985508 original size:12 final size:12
Alignment explanation
Indices: 26985491--26985515 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26985481 TATTAATCAC
26985491 TATGAGTAATGT
1 TATGAGTAATGT
26985503 TATGAGTAATGT
1 TATGAGTAATGT
26985515 T
1 T
26985516 GTGACAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (12 bp):
TATGAGTAATGT
Found at i:26993045 original size:12 final size:12
Alignment explanation
Indices: 26993030--26993135 Score: 56
Period size: 12 Copynumber: 8.8 Consensus size: 12
26993020 TCAAACTCTC
*
26993030 TTTCTTTTTCTT
1 TTTCATTTTCTT
26993042 TTTCATTTTC-T
1 TTTCATTTTCTT
**
26993053 TTTC--TTTCAA
1 TTTCATTTTCTT
*
26993063 TTTCTTTTTCTT
1 TTTCATTTTCTT
*
26993075 TTTCATTTTCTC
1 TTTCATTTTCTT
* ****
26993087 GTTCGCACTCTT
1 TTTCATTTTCTT
*
26993099 TTTCTTTTTCCTTT
1 TTTCATTTT-C-TT
*
26993113 CTTTCAATTTCTT
1 -TTTCATTTTCTT
26993126 TTTCATTTTC
1 TTTCATTTTC
26993136 ACTTTCTCGC
Statistics
Matches: 68, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
9 4 0.06
10 4 0.06
11 5 0.07
12 42 0.62
13 3 0.04
14 3 0.04
15 7 0.10
ACGTcount: A:0.08, C:0.22, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTCATTTTCTT
Done.