Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 82 of 136
Found at i:26993055 original size:5 final size:6
Alignment explanation
Indices: 26993030--26993085 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
26993020 TCAAACTCTC
* **
26993030 TTTCTT TTTCTT TTTCAT TTTC-T TTTC-- TTTCAA TTTCTT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
*
26993075 TTTCAT TTTCT
1 TTTCTT TTTCT
26993086 CGTTCGCACT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
4 4 0.09
5 5 0.12
6 34 0.79
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTCTT
Found at i:26993066 original size:15 final size:16
Alignment explanation
Indices: 26993030--26993075 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
26993020 TCAAACTCTC
*
26993030 TTTCTTTTTCTTTTTCAT
1 TTTCTTTTTC--TTTCAA
26993048 TTTC-TTTTCTTTCAA
1 TTTCTTTTTCTTTCAA
26993063 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
26993076 TTCATTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 9 0.35
16 8 0.31
17 5 0.19
18 4 0.15
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTCTTTTTCTTTCAA
Found at i:26993142 original size:57 final size:57
Alignment explanation
Indices: 26993038--26993165 Score: 195
Period size: 57 Copynumber: 2.2 Consensus size: 57
26993028 TCTTTCTTTT
* * * *
26993038 TCTTTTTCATTTTCTTTTCTTTCAATTTCTTTTTCTTTTTCATTTTCTCG-TTCGCAC
1 TCTTTTTCTTTTTCCTTTCTTTCAATTTCTTTTTCATTTTCACTTTCTCGCTT-GCAC
26993095 TCTTTTTCTTTTTCCTTTCTTTCAATTTCTTTTTCATTTTCACTTTCTCGCTTGCAC
1 TCTTTTTCTTTTTCCTTTCTTTCAATTTCTTTTTCATTTTCACTTTCTCGCTTGCAC
*
26993152 TATTTTTCTTTTTC
1 TCTTTTTCTTTTTC
26993166 TTTTGCCTCA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 63 0.97
58 2 0.03
ACGTcount: A:0.09, C:0.23, G:0.03, T:0.65
Consensus pattern (57 bp):
TCTTTTTCTTTTTCCTTTCTTTCAATTTCTTTTTCATTTTCACTTTCTCGCTTGCAC
Found at i:26994195 original size:46 final size:46
Alignment explanation
Indices: 26994143--26994232 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
26994133 CAAAGAAAAG
26994143 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATAA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATAA
*
26994189 ACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGAT
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGAT
26994233 GAACGCCACA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (46 bp):
ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATAA
Found at i:26997118 original size:21 final size:21
Alignment explanation
Indices: 26997060--26997124 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
26997050 TCTCACTCTC
*
26997060 TTTTTCTTTT-TCAATGTCTT
1 TTTTTCTTTTCTCAATTTCTT
26997080 TTTCTT-TTTCTCTC-ATTTCTT
1 TTT-TTCTTT-TCTCAATTTCTT
*
26997101 TTTTTCTTTTCTCAATTTCAT
1 TTTTTCTTTTCTCAATTTCTT
26997122 TTT
1 TTT
26997125 GGATTTGTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
20 12 0.32
21 24 0.63
22 2 0.05
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTTCTTTTCTCAATTTCTT
Found at i:26998558 original size:46 final size:46
Alignment explanation
Indices: 26998506--26998598 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
26998496 AAAGAAAAGG
*
26998506 CCTCGACCCACTATCAAGAATGGTAGGAACCTTGGTATATGATGAA
1 CCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGAA
*
26998552 CCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATGAA
1 CCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGAA
26998598 C
1 C
26998599 GCCACACTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.24
Consensus pattern (46 bp):
CCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGAA
Found at i:27001758 original size:20 final size:18
Alignment explanation
Indices: 27001723--27001769 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
27001713 TCTTCACTCG
*
27001723 TTTCTTTTTCAGTCTCTC
1 TTTCTTTTTCACTCTCTC
* *
27001741 TTTCTTTTTTACACTCTC
1 TTTCTTTTTCACTCTCTC
27001759 -TTCTATTTTCA
1 TTTCT-TTTTCA
27001770 GGAACTCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.11, C:0.26, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTCTTTTTCACTCTCTC
Found at i:27001943 original size:18 final size:18
Alignment explanation
Indices: 27001922--27001965 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
27001912 AATCTTGAAC
* *
27001922 TCTTTTTCAAAGTTCTTT
1 TCTTTCTCAAACTTCTTT
* *
27001940 TCTTGCTCAAACTTTTTT
1 TCTTTCTCAAACTTCTTT
27001958 TCTTTCTC
1 TCTTTCTC
27001966 TTTTCTTTCT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.14, C:0.23, G:0.05, T:0.59
Consensus pattern (18 bp):
TCTTTCTCAAACTTCTTT
Found at i:27002058 original size:6 final size:6
Alignment explanation
Indices: 27002047--27002098 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
27002037 TTTTTACTCC
* *
27002047 TTTTCT TTTTCT TTGTCAT TTTTC- TCTTCT TTTTCT TTTTCAT TTTTCT
1 TTTTCT TTTTCT TTTTC-T TTTTCT TTTTCT TTTTCT TTTTC-T TTTTCT
27002096 TTT
1 TTT
27002099 CTTGTTCATT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 4 0.10
6 24 0.62
7 11 0.28
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTTCT
Found at i:27002068 original size:13 final size:12
Alignment explanation
Indices: 27002046--27002099 Score: 67
Period size: 13 Copynumber: 4.5 Consensus size: 12
27002036 TTTTTTACTC
27002046 CTTTTC-TTTTT
1 CTTTTCATTTTT
27002057 CTTTGTCATTTTT
1 CTTT-TCATTTTT
*
27002070 CTCTTC-TTTTT
1 CTTTTCATTTTT
27002081 CTTTTTCATTTTT
1 C-TTTTCATTTTT
27002094 CTTTTC
1 CTTTTC
27002100 TTGTTCATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
11 10 0.27
12 13 0.35
13 14 0.38
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (12 bp):
CTTTTCATTTTT
Found at i:27002077 original size:24 final size:24
Alignment explanation
Indices: 27002049--27002101 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
27002039 TTTACTCCTT
27002049 TTCTTTTTCTTTGTCATTTTTCTC
1 TTCTTTTTCTTTGTCATTTTTCTC
* *
27002073 TTCTTTTTCTTTTTCATTTTTCTT
1 TTCTTTTTCTTTGTCATTTTTCTC
27002097 TTCTT
1 TTCTT
27002102 GTTCATTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (24 bp):
TTCTTTTTCTTTGTCATTTTTCTC
Found at i:27003325 original size:27 final size:27
Alignment explanation
Indices: 27003295--27003384 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
27003285 TTACCCTATG
27003295 GGGGTATTTCGATAATTTTACCCATCA
1 GGGGTATTTCGATAATTTTACCCATCA
* * * *
27003322 GGGGTATTTCGGTATTTTTACCCTTCG
1 GGGGTATTTCGATAATTTTACCCATCA
27003349 GGGGTATTTCGATAATTTTACCCATCA
1 GGGGTATTTCGATAATTTTACCCATCA
*
27003376 AGGGTATTT
1 GGGGTATTT
27003385 TGGAAATTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGGTATTTCGATAATTTTACCCATCA
Found at i:27003392 original size:27 final size:27
Alignment explanation
Indices: 27003308--27003424 Score: 94
Period size: 27 Copynumber: 4.4 Consensus size: 27
27003298 GTATTTCGAT
* * *
27003308 AATTTTACCCATCAGGGGTATTTCGGT
1 AATTTTACCCATCAAGGGTATTTTGGA
* * ** *
27003335 ATTTTTACCCTTCGGGGGTA-TTTCGA
1 AATTTTACCCATCAAGGGTATTTTGGA
27003361 TAATTTTACCCATCAAGGGTATTTTGGA
1 -AATTTTACCCATCAAGGGTATTTTGGA
* * ** *
27003389 AA-TTTACACATCGAGGGTATTTAAGT
1 AATTTTACCCATCAAGGGTATTTTGGA
27003415 AATTTTACCC
1 AATTTTACCC
27003425 TTTGAGGTTA
Statistics
Matches: 70, Mismatches: 17, Indels: 6
0.75 0.18 0.06
Matches are distributed among these distances:
26 24 0.34
27 41 0.59
28 5 0.07
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (27 bp):
AATTTTACCCATCAAGGGTATTTTGGA
Found at i:27003418 original size:26 final size:26
Alignment explanation
Indices: 27003365--27003419 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
27003355 TTTCGATAAT
* **
27003365 TTTACCCATCAAGGGTATTTTGGAAA
1 TTTACACATCAAGGGTATTTAAGAAA
* *
27003391 TTTACACATCGAGGGTATTTAAGTAA
1 TTTACACATCAAGGGTATTTAAGAAA
27003417 TTT
1 TTT
27003420 TACCCTTTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (26 bp):
TTTACACATCAAGGGTATTTAAGAAA
Found at i:27004585 original size:22 final size:23
Alignment explanation
Indices: 27004559--27004603 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
27004549 CTAAAATCAC
*
27004559 TCCTCCA-ATCCTCTCCTTAAAA
1 TCCTCCAGATCCACTCCTTAAAA
27004581 TCCTCCATGATCCACTCCTTAAA
1 TCCTCCA-GATCCACTCCTTAAA
27004604 TCACTCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
24 13 0.65
ACGTcount: A:0.27, C:0.40, G:0.02, T:0.31
Consensus pattern (23 bp):
TCCTCCAGATCCACTCCTTAAAA
Found at i:27011081 original size:10 final size:10
Alignment explanation
Indices: 27011068--27011124 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
27011058 TTTGAATCAA
27011068 CTCATTTGAG
1 CTCATTTGAG
*
27011078 CTCATTTAAG
1 CTCATTTGAG
*
27011088 CTCGTTTGAG
1 CTCATTTGAG
* *
27011098 CTCAATCGAG
1 CTCATTTGAG
* *
27011108 CTTAGTTTCAG
1 CTCA-TTTGAG
27011119 CTCATT
1 CTCATT
27011125 CCATTAACCT
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
10 29 0.83
11 6 0.17
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (10 bp):
CTCATTTGAG
Found at i:27011109 original size:20 final size:20
Alignment explanation
Indices: 27011062--27011109 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
27011052 ATTCAATTTG
*
27011062 AATCAA-CTCATTTGAGCTC
1 AATCAAGCTCGTTTGAGCTC
* *
27011081 ATTTAAGCTCGTTTGAGCTC
1 AATCAAGCTCGTTTGAGCTC
*
27011101 AATCGAGCT
1 AATCAAGCT
27011110 TAGTTTCAGC
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (20 bp):
AATCAAGCTCGTTTGAGCTC
Found at i:27016335 original size:18 final size:16
Alignment explanation
Indices: 27016311--27016359 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 16
27016301 AAAATGAATA
27016311 ATAAAATAAAATAAAAG
1 ATAAAAT-AAATAAAAG
27016328 ATATAAATCCAAA-AAAAG
1 ATA-AAAT--AAATAAAAG
27016346 ATAAAATAAATAAA
1 ATAAAATAAATAAA
27016360 TAAAAATAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 3 0.11
16 3 0.11
17 7 0.25
18 12 0.43
19 3 0.11
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.18
Consensus pattern (16 bp):
ATAAAATAAATAAAAG
Found at i:27016349 original size:25 final size:25
Alignment explanation
Indices: 27016313--27016360 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
27016303 AATGAATAAT
*
27016313 AAAATAAAATAAAAGATATAAATCC
1 AAAATAAAATAAAAGAAATAAATCC
*
27016338 AAAA-AAAGATAAAATAAATAAAT
1 AAAATAAA-ATAAAAGAAATAAAT
27016361 AAAAATAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 3 0.15
25 17 0.85
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (25 bp):
AAAATAAAATAAAAGAAATAAATCC
Found at i:27017296 original size:31 final size:31
Alignment explanation
Indices: 27017261--27017321 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
27017251 CGCCATCTCT
27017261 GTTCACCTTCACTATTGTCCAACGTCGTTCC
1 GTTCACCTTCACTATTGTCCAACGTCGTTCC
27017292 GTTCACCTTCACTATTGTCCAACGTCGTTC
1 GTTCACCTTCACTATTGTCCAACGTCGTTC
27017322 AAGCCACCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.16, C:0.34, G:0.13, T:0.36
Consensus pattern (31 bp):
GTTCACCTTCACTATTGTCCAACGTCGTTCC
Found at i:27017330 original size:31 final size:31
Alignment explanation
Indices: 27017264--27017331 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
27017254 CATCTCTGTT
* *
27017264 CACCTTCACTATTGTCCAACGTCGTTCCGTT
1 CACCTTCACTATTGTCCAACGTCGTTCAGTC
27017295 CACCTTCACTATTGTCCAACGTCGTTCAAG-C
1 CACCTTCACTATTGTCCAACGTCGTTC-AGTC
27017326 CACCTT
1 CACCTT
27017332 GCTCAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 33 0.97
32 1 0.03
ACGTcount: A:0.19, C:0.37, G:0.12, T:0.32
Consensus pattern (31 bp):
CACCTTCACTATTGTCCAACGTCGTTCAGTC
Found at i:27018034 original size:25 final size:26
Alignment explanation
Indices: 27018006--27018054 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
27017996 AAAATAGAAT
27018006 TTAATAATTTTTAT-ATTTAAAAAAA
1 TTAATAATTTTTATAATTTAAAAAAA
*
27018031 TTAATAATTTTTATAATTTTAAAA
1 TTAATAATTTTTATAATTTAAAAA
27018055 TCATTTTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TTAATAATTTTTATAATTTAAAAAAA
Found at i:27019471 original size:34 final size:34
Alignment explanation
Indices: 27019426--27019492 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
27019416 TCCTTTTATT
*
27019426 TGTTAACAGCTCCTTTAAAAAATTTGCATACTTC
1 TGTTAACAGCTCATTTAAAAAATTTGCATACTTC
* *
27019460 TGTTAATAGCTCATTTAAAAATTTTGCATACTT
1 TGTTAACAGCTCATTTAAAAAATTTGCATACTT
27019493 TGGTATCTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (34 bp):
TGTTAACAGCTCATTTAAAAAATTTGCATACTTC
Found at i:27028995 original size:126 final size:126
Alignment explanation
Indices: 27028770--27029022 Score: 506
Period size: 126 Copynumber: 2.0 Consensus size: 126
27028760 GTATTGAAAT
27028770 TAATGATTGTTACTCGAATGAATGATGACCTATGCTCATACACCATTTGACATCAATTTGATAAT
1 TAATGATTGTTACTCGAATGAATGATGACCTATGCTCATACACCATTTGACATCAATTTGATAAT
27028835 GGCTATGTTATGACACAAAATTCCTATGATGGTTCTGTTTTCTTCTGTTAATGCTAATAAG
66 GGCTATGTTATGACACAAAATTCCTATGATGGTTCTGTTTTCTTCTGTTAATGCTAATAAG
27028896 TAATGATTGTTACTCGAATGAATGATGACCTATGCTCATACACCATTTGACATCAATTTGATAAT
1 TAATGATTGTTACTCGAATGAATGATGACCTATGCTCATACACCATTTGACATCAATTTGATAAT
27028961 GGCTATGTTATGACACAAAATTCCTATGATGGTTCTGTTTTCTTCTGTTAATGCTAATAAG
66 GGCTATGTTATGACACAAAATTCCTATGATGGTTCTGTTTTCTTCTGTTAATGCTAATAAG
27029022 T
1 T
27029023 TTCACTATAT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 127 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (126 bp):
TAATGATTGTTACTCGAATGAATGATGACCTATGCTCATACACCATTTGACATCAATTTGATAAT
GGCTATGTTATGACACAAAATTCCTATGATGGTTCTGTTTTCTTCTGTTAATGCTAATAAG
Found at i:27033051 original size:28 final size:28
Alignment explanation
Indices: 27033015--27033081 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
27033005 AGTACAGTGT
27033015 GGCCTTAGCCCAATA-AAGAATCAATGTG
1 GGCCTTAGCCCAATACAA-AATCAATGTG
*
27033043 GGCCTTAGCCCAATACAAAATCATTGTG
1 GGCCTTAGCCCAATACAAAATCAATGTG
*
27033071 GGTCTTAGCCC
1 GGCCTTAGCCC
27033082 CACACAGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 34 0.94
29 2 0.06
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (28 bp):
GGCCTTAGCCCAATACAAAATCAATGTG
Found at i:27033606 original size:27 final size:27
Alignment explanation
Indices: 27033574--27033705 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 27
27033564 GGTAAAATAG
27033574 TCATTTTACCCTTTAGGGGTATTTCGA
1 TCATTTTACCCTTTAGGGGTATTTCGA
* * * * *
27033601 TAATTTTAACC-TTCGAGGGCATTT-TA
1 TCATTTTACCCTTTAG-GGGTATTTCGA
* *
27033627 GTCATTTTACCCTTTAGAGGTAATTCGA
1 -TCATTTTACCCTTTAGGGGTATTTCGA
** * *
27033655 TCATTTTACCCTTCGGGGGTAATTCGG
1 TCATTTTACCCTTTAGGGGTATTTCGA
*
27033682 TCATTTTACCCTGTAGGGGTATTT
1 TCATTTTACCCTTTAGGGGTATTT
27033706 TAGTTATTTT
Statistics
Matches: 81, Mismatches: 20, Indels: 8
0.74 0.18 0.07
Matches are distributed among these distances:
26 4 0.05
27 73 0.90
28 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTTTAGGGGTATTTCGA
Found at i:27033716 original size:54 final size:54
Alignment explanation
Indices: 27033572--27033705 Score: 178
Period size: 54 Copynumber: 2.5 Consensus size: 54
27033562 GGGGTAAAAT
* *
27033572 AGTCATTTTACCCTTTAGGGGTATTTCGATAATTTTAACCTTCGAGGGCATTTT
1 AGTCATTTTACCCTTTAGGGGTATTTCGATAATTTTAACCTTCGAGGGCAATTC
* * * * * *
27033626 AGTCATTTTACCCTTTAGAGGTAATTCGATCATTTTACCCTTCGGGGGTAATTC
1 AGTCATTTTACCCTTTAGGGGTATTTCGATAATTTTAACCTTCGAGGGCAATTC
* *
27033680 GGTCATTTTACCCTGTAGGGGTATTT
1 AGTCATTTTACCCTTTAGGGGTATTT
27033706 TAGTTATTTT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (54 bp):
AGTCATTTTACCCTTTAGGGGTATTTCGATAATTTTAACCTTCGAGGGCAATTC
Found at i:27067142 original size:54 final size:52
Alignment explanation
Indices: 27067013--27067175 Score: 215
Period size: 51 Copynumber: 3.2 Consensus size: 52
27067003 CCGTCCTTTA
* * * *
27067013 TCTTCTT-TCCTCAAATGATGCCATAGTCCCATACTAGGTCTTACACTACAG
1 TCTTCTTATCCCCATATGATGCCATAGTCCCAGACTAGGTCTTACACTATAG
** *
27067064 TCTT-TTATCCCCATATGATGCCATAGTCTTAGAATAGGTCTTACACTATATGG
1 TCTTCTTATCCCCATATGATGCCATAGTCCCAGACTAGGTCTTACACTATA--G
*
27067117 TCTTCTTATCCCCATATGATGCCATAGTCCCAGACTAGGTCTTACAATATAG
1 TCTTCTTATCCCCATATGATGCCATAGTCCCAGACTAGGTCTTACACTATAG
27067169 TC-TCTTA
1 TCTTCTTA
27067176 CCATGGCCAT
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
50 2 0.02
51 45 0.46
52 3 0.03
53 5 0.05
54 42 0.43
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (52 bp):
TCTTCTTATCCCCATATGATGCCATAGTCCCAGACTAGGTCTTACACTATAG
Found at i:27067186 original size:54 final size:51
Alignment explanation
Indices: 27067027--27067175 Score: 199
Period size: 54 Copynumber: 2.9 Consensus size: 51
27067017 CTTTCCTCAA
* * * *
27067027 ATGATGCCATAGTCCCATACTAGGTCTTACACTACAGTCTTTTATCCCCAT
1 ATGATGCCATAGTCCCAGACTAGGTCTTACAATATAGTCTCTTATCCCCAT
** * *
27067078 ATGATGCCATAGTCTTAGAATAGGTCTTACACTATATGGTCTTCTTATCCCCAT
1 ATGATGCCATAGTCCCAGACTAGGTCTTACA--ATATAGTC-TCTTATCCCCAT
27067132 ATGATGCCATAGTCCCAGACTAGGTCTTACAATATAGTCTCTTA
1 ATGATGCCATAGTCCCAGACTAGGTCTTACAATATAGTCTCTTA
27067176 CCATGGCCAT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
51 32 0.39
52 7 0.08
53 5 0.06
54 39 0.47
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (51 bp):
ATGATGCCATAGTCCCAGACTAGGTCTTACAATATAGTCTCTTATCCCCAT
Found at i:27069630 original size:64 final size:64
Alignment explanation
Indices: 27069521--27069640 Score: 150
Period size: 64 Copynumber: 1.9 Consensus size: 64
27069511 TTACTTTGCA
* * * * **
27069521 AAGGTTCGGTGGATGAGAATAGGGTTTTAGCATTGCATATCATTAAGAAAATTATGGTTTTACG
1 AAGGTTCAGTGGATGAAAATAGGGTTTCAACATTAAATATCATTAAGAAAATTATGGTTTTACG
* * * *
27069585 AAGGTTCAGTGGATGAAAATGGGGTTTCAATATTAAATATTATTAAGTAAATTATG
1 AAGGTTCAGTGGATGAAAATAGGGTTTCAACATTAAATATCATTAAGAAAATTATG
27069641 ACTTTGTAGA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
64 46 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (64 bp):
AAGGTTCAGTGGATGAAAATAGGGTTTCAACATTAAATATCATTAAGAAAATTATGGTTTTACG
Found at i:27071824 original size:71 final size:69
Alignment explanation
Indices: 27071658--27071828 Score: 177
Period size: 69 Copynumber: 2.4 Consensus size: 69
27071648 GTTGGAGAAT
* * * * *
27071658 CAAATTTGAATGTGAATCACTGTCCAAAATGGTATTAGATCTATCCATTGCATGCTTTGAAAACT
1 CAAATTTGAATGTGAATTACTGTCCAAAATGGTATTAGATATATCCATTACATGCTATCAAAACT
* *
27071723 TGTT
66 TATC
* *
27071727 CAAATTTGAATGTGAAATT-CTATCCAAAATGGTATTATATATATCTCTATTACATGC-ATCAAA
1 CAAATTTGAATGTG-AATTACTGTCCAAAATGGTATTAGATATATC-C-ATTACATGCTATCAAA
27071790 TTA-TTATC
63 --ACTTATC
* *
27071798 CAAATATGAATGTGAATTATTGTCCAAAATG
1 CAAATTTGAATGTGAATTACTGTCCAAAATG
27071829 ACATTAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
69 37 0.44
70 12 0.14
71 34 0.40
72 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (69 bp):
CAAATTTGAATGTGAATTACTGTCCAAAATGGTATTAGATATATCCATTACATGCTATCAAAACT
TATC
Found at i:27071926 original size:69 final size:69
Alignment explanation
Indices: 27071774--27071927 Score: 166
Period size: 69 Copynumber: 2.2 Consensus size: 69
27071764 TATATATCTC
* * * * *
27071774 TATTACATGCATCAAATTATTATCCAAATATGAATGTGAATTATTGTCCAAAATGACATTAATTG
1 TATTACATGCTTCAAATTACTATCCAAATATAAAGGTGAATTATTGTCCAAAATGACAATAATTG
*
27071839 TATC
66 TATA
* * * * * * **
27071843 CATTTCATGTTTCAAGA-TACTATCCGAATATAAAGGTGAATTTTTGTCCAAATTGGTAATAATT
1 TATTACATGCTTCAA-ATTACTATCCAAATATAAAGGTGAATTATTGTCCAAAATGACAATAATT
27071907 GTATA
65 GTATA
27071912 TATTACATGCTTCAAA
1 TATTACATGCTTCAAA
27071928 ATTTCTGTCT
Statistics
Matches: 67, Mismatches: 17, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
68 1 0.01
69 65 0.97
70 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (69 bp):
TATTACATGCTTCAAATTACTATCCAAATATAAAGGTGAATTATTGTCCAAAATGACAATAATTG
TATA
Found at i:27073179 original size:62 final size:61
Alignment explanation
Indices: 27073106--27073446 Score: 360
Period size: 62 Copynumber: 5.5 Consensus size: 61
27073096 TCCGAAGCAT
* * * * * * * * *
27073106 AAACAATGAGTTACATGGCTTGGACACATGTCCATGTCCCTGCCCGTGTGATCTTGTACCAA
1 AAACAGTGAGTTACACGGCCTGGGCACACG-CCGTGTCCCTGGCCGTGTGGTCTTGTACCAC
* * * * * * *
27073168 AAAAAGTGAGTTACATGACCTGGGCACATGGTCGTGTCCCT-GCCTGTGTGATATTGTACCAC
1 AAACAGTGAGTTACACGGCCTGGGCACA-CGCCGTGTCCCTGGCC-GTGTGGTCTTGTACCAC
* * *
27073230 AAACAGTGAGTTACACGGCCTGGGCACACGCCCGTGTCCCTGGTCATGTGGTCTTGTATCAC
1 AAACAGTGAGTTACACGGCCTGGGCACACG-CCGTGTCCCTGGCCGTGTGGTCTTGTACCAC
* * *
27073292 AAATAGTGAGTTACACGACTTGGGCACACGCCTGTGTCCCTGGCCGTGTGGTCTTGTACCAC
1 AAACAGTGAGTTACACGGCCTGGGCACACGCC-GTGTCCCTGGCCGTGTGGTCTTGTACCAC
* * * *
27073354 AAACAGTGAGTTACACGGCCAGGGCACAAGCTCGTGTCCCTGGTCGTGTGGTATTGTACCAC
1 AAACAGTGAGTTACACGGCCTGGGCACACGC-CGTGTCCCTGGCCGTGTGGTCTTGTACCAC
* * *
27073416 AAACAGTGAGTTACATGGCCTAGCCACACGC
1 AAACAGTGAGTTACACGGCCTGGGCACACGC
27073447 ATATTTCCCT
Statistics
Matches: 234, Mismatches: 39, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
61 5 0.02
62 225 0.96
63 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (61 bp):
AAACAGTGAGTTACACGGCCTGGGCACACGCCGTGTCCCTGGCCGTGTGGTCTTGTACCAC
Found at i:27074163 original size:21 final size:21
Alignment explanation
Indices: 27074139--27074181 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
27074129 AATAATGAAA
27074139 ATAGAAAAGAAGAAAAAGAAG
1 ATAGAAAAGAAGAAAAAGAAG
* * *
27074160 ATAGAAATGACGAAGAAGAAG
1 ATAGAAAAGAAGAAAAAGAAG
27074181 A
1 A
27074182 AAAATAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.65, C:0.02, G:0.26, T:0.07
Consensus pattern (21 bp):
ATAGAAAAGAAGAAAAAGAAG
Found at i:27074194 original size:27 final size:30
Alignment explanation
Indices: 27074145--27074206 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 30
27074135 GAAAATAGAA
*
27074145 AAGAAGAAAAAGAAGATAGAAATGACGAAG
1 AAGAAGAAAAAGAAGATAGAAATAACGAAG
* *
27074175 AAGAAGAAAAATAA-A-A-AAATAAGGAAG
1 AAGAAGAAAAAGAAGATAGAAATAACGAAG
27074202 AAGAA
1 AAGAA
27074207 ACTATCGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 14 0.48
28 1 0.03
29 1 0.03
30 13 0.45
ACGTcount: A:0.69, C:0.02, G:0.23, T:0.06
Consensus pattern (30 bp):
AAGAAGAAAAAGAAGATAGAAATAACGAAG
Found at i:27089500 original size:6 final size:6
Alignment explanation
Indices: 27089491--27089540 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
27089481 TTACTCGTAC
**
27089491 TCTTTT TCTTTT TC-TTT TC--TT TCAATT TCTTTT TCTTTT TCTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
27089536 T-TTTT
1 TCTTTT
27089541 CTTACCTCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
4 4 0.10
5 9 0.22
6 27 0.68
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (6 bp):
TCTTTT
Found at i:27096289 original size:22 final size:22
Alignment explanation
Indices: 27096264--27096334 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
27096254 TTCGGTTTAT
*
27096264 GTTTAGTTATGGAATGGTTTTG
1 GTTTAGGTATGGAATGGTTTTG
*
27096286 GTTTTGGTAT-GAATTGGTTTTTG
1 GTTTAGGTATGGAA-TGG-TTTTG
* * * *
27096309 GTGTAGGTACGAAATGGTATTG
1 GTTTAGGTATGGAATGGTTTTG
27096331 GTTT
1 GTTT
27096335 TTGGTACGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
21 3 0.08
22 18 0.47
23 15 0.39
24 2 0.05
ACGTcount: A:0.18, C:0.01, G:0.32, T:0.48
Consensus pattern (22 bp):
GTTTAGGTATGGAATGGTTTTG
Found at i:27096317 original size:23 final size:23
Alignment explanation
Indices: 27096276--27096351 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
27096266 TTAGTTATGG
* * *
27096276 AATGG-TTTTGGTTTTGGTATGA
1 AATGGTTTTTGGTGTAGGTACGA
*
27096298 ATTGGTTTTTGGTGTAGGTACGA
1 AATGGTTTTTGGTGTAGGTACGA
* * *
27096321 AATGG-TATTGGTTTTTGGTACGA
1 AATGGTTTTTGG-TGTAGGTACGA
27096344 AATGGTTT
1 AATGGTTT
27096352 CTTTTGGTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
22 9 0.21
23 32 0.76
24 1 0.02
ACGTcount: A:0.20, C:0.03, G:0.32, T:0.46
Consensus pattern (23 bp):
AATGGTTTTTGGTGTAGGTACGA
Found at i:27098746 original size:36 final size:36
Alignment explanation
Indices: 27098699--27098769 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
27098689 ACCAAGGCCA
27098699 AATGTAGACTAGTCCATAAAGCCCGAATGTAGACCG
1 AATGTAGACTAGTCCATAAAGCCCGAATGTAGACCG
*
27098735 AATGTATACTAGTCCATAAAGCCCGAATGTAGACC
1 AATGTAGACTAGTCCATAAAGCCCGAATGTAGACC
27098770 ACTCTCCAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.21
Consensus pattern (36 bp):
AATGTAGACTAGTCCATAAAGCCCGAATGTAGACCG
Found at i:27103095 original size:6 final size:6
Alignment explanation
Indices: 27103084--27103180 Score: 50
Period size: 6 Copynumber: 16.2 Consensus size: 6
27103074 ATTTTCTTCA
* ** * * * * * *
27103084 TTTTCT TTTTCT CTCACT TTTTCG ATTTCT TTTTAT TTTGCA ATTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
* * * * ** *
27103132 TTTTCT TTTTCA TTTTCA TTTTCA TTTTCA CATTCT TTTTAT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
27103180 T
1 T
27103181 CTTTTTCGTT
Statistics
Matches: 65, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
6 65 1.00
ACGTcount: A:0.11, C:0.18, G:0.02, T:0.69
Consensus pattern (6 bp):
TTTTCT
Found at i:27103122 original size:18 final size:18
Alignment explanation
Indices: 27103109--27103178 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 18
27103099 ACTTTTTCGA
* *
27103109 TTTCTTTTTATTTTGCAA
1 TTTCTTTTTATTTTTCAC
* *
27103127 TTTCTTTTTCTTTTTCAT
1 TTTCTTTTTATTTTTCAC
*
27103145 TTTCATTTTCA-TTTTCAC
1 TTTC-TTTTTATTTTTCAC
*
27103163 ATTCTTTTTATTTTTC
1 TTTCTTTTTATTTTTC
27103179 TTCTTTTTCG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
17 5 0.12
18 33 0.79
19 4 0.10
ACGTcount: A:0.13, C:0.16, G:0.01, T:0.70
Consensus pattern (18 bp):
TTTCTTTTTATTTTTCAC
Found at i:27108677 original size:20 final size:19
Alignment explanation
Indices: 27108620--27108678 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 19
27108610 GTAGATTTAG
* *
27108620 TGAGCTAAAAGAGCTGATAA
1 TGAGCTCAATGAGCTGA-AA
* *
27108640 TGAGCTCAATGAGATGAAT
1 TGAGCTCAATGAGCTGAAA
*
27108659 TGAGCTCGAGTGAGCTGAAA
1 TGAGCTC-AATGAGCTGAAA
27108679 CAACTAATTA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
19 8 0.26
20 23 0.74
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.22
Consensus pattern (19 bp):
TGAGCTCAATGAGCTGAAA
Found at i:27108791 original size:20 final size:21
Alignment explanation
Indices: 27108766--27108820 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
27108756 CAAGCTTGCT
*
27108766 AGCTAGGAA-TGAGCT-TATTG
1 AGCTA-GAATTGAGCTAAATTG
27108786 AGCTAGAATTGAGCTAAATTG
1 AGCTAGAATTGAGCTAAATTG
*
27108807 AGCTCG-ATTGAGCT
1 AGCTAGAATTGAGCT
27108821 GGATCAAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.10
20 19 0.61
21 9 0.29
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (21 bp):
AGCTAGAATTGAGCTAAATTG
Found at i:27108796 original size:11 final size:11
Alignment explanation
Indices: 27108782--27108820 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
27108772 GAATGAGCTT
27108782 ATTGAGCTAGA
1 ATTGAGCTAGA
27108793 ATTGAGCTA-A
1 ATTGAGCTAGA
*
27108803 ATTGAGCTCG-
1 ATTGAGCTAGA
27108813 ATTGAGCT
1 ATTGAGCT
27108821 GGATCAAGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.31
Consensus pattern (11 bp):
ATTGAGCTAGA
Found at i:27109997 original size:24 final size:25
Alignment explanation
Indices: 27109951--27109997 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
27109941 AGGAATTTGG
*
27109951 CTAAATGAATTGATGATGGAAATGA
1 CTAAATGAATTGATGATGAAAATGA
* *
27109976 CTAAGTGAA-TGATGGTGAAAAT
1 CTAAATGAATTGATGATGAAAAT
27109998 TCAGCTAAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.28
Consensus pattern (25 bp):
CTAAATGAATTGATGATGAAAATGA
Found at i:27111187 original size:46 final size:45
Alignment explanation
Indices: 27111125--27111241 Score: 136
Period size: 40 Copynumber: 2.6 Consensus size: 45
27111115 GACAATTAAG
* *
27111125 TAACTAAAATTGAGTTTAATAAAAATAAAGTCCAATAACTCAATTAT
1 TAACTAAGA-TGAGTTT-ATAAAAATAAAGTCCAACAACTCAATTAT
*
27111172 TAACTAAGATGAG-TT-T---AATAAAGTCCAGCAACTCAATTAT
1 TAACTAAGATGAGTTTATAAAAATAAAGTCCAACAACTCAATTAT
*
27111212 TAACTAAGATGAGTTTATTAAAATTAAAGT
1 TAACTAAGATGAGTTTA-TAAAAATAAAGT
27111242 TCAGCTTGCA
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
40 35 0.58
41 2 0.03
43 2 0.03
45 2 0.03
46 11 0.18
47 8 0.13
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.32
Consensus pattern (45 bp):
TAACTAAGATGAGTTTATAAAAATAAAGTCCAACAACTCAATTAT
Found at i:27111205 original size:40 final size:40
Alignment explanation
Indices: 27111148--27111233 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
27111138 GTTTAATAAA
*
27111148 AATAAAGTCCAATAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
*
27111188 AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
*
27111228 ATTAAA
1 AATAAA
27111234 ATTAAAGTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.31
Consensus pattern (40 bp):
AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
Found at i:27113302 original size:16 final size:17
Alignment explanation
Indices: 27113265--27113306 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
27113255 TTCTTTCGTT
27113265 TCTTTTTTCTAACTTAC
1 TCTTTTTTCTAACTTAC
* *
27113282 T-TTTTTTC-AATTTTC
1 TCTTTTTTCTAACTTAC
27113297 TCTTTTTTCT
1 TCTTTTTTCT
27113307 CACATTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 6 0.29
16 14 0.67
17 1 0.05
ACGTcount: A:0.12, C:0.19, G:0.00, T:0.69
Consensus pattern (17 bp):
TCTTTTTTCTAACTTAC
Found at i:27121800 original size:18 final size:19
Alignment explanation
Indices: 27121777--27121820 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
27121767 CTTTACTTAG
*
27121777 TTTTTTTATAC-TCGAACT
1 TTTTTTTATACTTCAAACT
*
27121795 TTTTTTT-TACTTCAAATT
1 TTTTTTTATACTTCAAACT
27121813 TTTTTTTA
1 TTTTTTTA
27121821 ATTACAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.20, C:0.11, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTTTTATACTTCAAACT
Found at i:27123307 original size:20 final size:20
Alignment explanation
Indices: 27123282--27123338 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
27123272 ATGCTTAATT
27123282 GAGCTCAAACGAGCTGAAAA
1 GAGCTCAAACGAGCTGAAAA
** ***
27123302 GAGCTCAAGTGAGCTGATTT
1 GAGCTCAAACGAGCTGAAAA
*
27123322 GAGCTGAAACGAGCTGA
1 GAGCTCAAACGAGCTGA
27123339 GGGAGCTGGA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.18
Consensus pattern (20 bp):
GAGCTCAAACGAGCTGAAAA
Found at i:27123354 original size:30 final size:30
Alignment explanation
Indices: 27123292--27123360 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
27123282 GAGCTCAAAC
* *
27123292 GAGCTGAAAAGAGCTCAAGTGAGCTGATTT
1 GAGCTGAAAAGAGCTCAAGGGAGCTGAATT
* *
27123322 GAGCTGAAACGAGCT-GAGGGAGCTGGAATT
1 GAGCTGAAAAGAGCTCAAGGGAGCT-GAATT
27123352 GAGCT-AAAA
1 GAGCTGAAAA
27123361 TCAGCTTGCA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 10 0.30
30 23 0.70
ACGTcount: A:0.35, C:0.13, G:0.33, T:0.19
Consensus pattern (30 bp):
GAGCTGAAAAGAGCTCAAGGGAGCTGAATT
Found at i:27125170 original size:11 final size:10
Alignment explanation
Indices: 27125154--27125201 Score: 78
Period size: 10 Copynumber: 4.6 Consensus size: 10
27125144 TCAAATTTTA
27125154 TTTTTTGAATT
1 TTTTTTGAA-T
27125165 TTTTTTGAAT
1 TTTTTTGAAT
27125175 TTTTTTGAAT
1 TTTTTTGAAT
27125185 TTTTTTGAAT
1 TTTTTTGAAT
27125195 TTATTTT
1 TT-TTTT
27125202 CAAATTTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
10 23 0.64
11 13 0.36
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.73
Consensus pattern (10 bp):
TTTTTTGAAT
Found at i:27125209 original size:20 final size:20
Alignment explanation
Indices: 27125166--27125210 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
27125156 TTTTGAATTT
* *
27125166 TTTTTGAATTTTTTTGAATT
1 TTTTTGAATTTTTTTCAATA
27125186 TTTTTGAATTTATTTTCAA-A
1 TTTTTGAATTT-TTTTCAATA
27125206 TTTTT
1 TTTTT
27125211 ATACGAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.69
Consensus pattern (20 bp):
TTTTTGAATTTTTTTCAATA
Found at i:27127953 original size:40 final size:40
Alignment explanation
Indices: 27127898--27128023 Score: 207
Period size: 40 Copynumber: 3.1 Consensus size: 40
27127888 GTTTAATAAA
27127898 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
* * *
27127938 AATAAAGTCCAACAACTGAATTATTAACTAACATGTGTTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
* *
27127978 AATAAATTCCAACAACTCAATTATTAACTAAGATGAATTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
27128018 AATAAA
1 AATAAA
27128024 ATTAAAGTTC
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.31
Consensus pattern (40 bp):
AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
Found at i:27137402 original size:11 final size:11
Alignment explanation
Indices: 27137370--27137403 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
27137360 GTAGGATCGT
*
27137370 AAAAAAACTCA
1 AAAAAAATTCA
27137381 AAAAAAATTCA
1 AAAAAAATTCA
*
27137392 AAAAAATTTCA
1 AAAAAAATTCA
27137403 A
1 A
27137404 TATAAAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:27142614 original size:38 final size:38
Alignment explanation
Indices: 27142545--27142655 Score: 132
Period size: 39 Copynumber: 2.9 Consensus size: 38
27142535 TTAAAACATG
* * * *
27142545 TATTAAAGATGTCCTAAACTATGACATAATTAAAACCCT
1 TATTAATGATGTTC-AAATTATGACATAATTAAAACCCA
** * *
27142584 TATTAATTTTGTTCAGATTATGACATAATTAAAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATT-AAAACCCA
27142623 TATTAATGATGTTCAAATTATGACATAATTAAA
1 TATTAATGATGTTCAAATTATGACATAATTAAA
27142656 GAATCAAACT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
38 17 0.28
39 43 0.72
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (38 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAACCCA
Found at i:27144073 original size:29 final size:31
Alignment explanation
Indices: 27144026--27144084 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 31
27144016 AACATGGAAG
*
27144026 CCTTTGTGGCAAACCTCT-GAAAG-GAAATA
1 CCTTTGTGGCAAACATCTGGAAAGTGAAATA
* *
27144055 CCTTTGTGGTAAATATCTGGAAAGTGAAAT
1 CCTTTGTGGCAAACATCTGGAAAGTGAAAT
27144085 GAACTTGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.60
30 5 0.20
31 5 0.20
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (31 bp):
CCTTTGTGGCAAACATCTGGAAAGTGAAATA
Found at i:27147784 original size:10 final size:10
Alignment explanation
Indices: 27147771--27147809 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
27147761 AAAGATTGGA
*
27147771 AAAGAAAACG
1 AAAGAAAAAG
*
27147781 AAAGAAAAAT
1 AAAGAAAAAG
27147791 AAAGAAAAAG
1 AAAGAAAAAG
27147801 AAAAGAAAA
1 -AAAGAAAA
27147810 GACGAGAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:27147794 original size:20 final size:21
Alignment explanation
Indices: 27147771--27147809 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
27147761 AAAGATTGGA
*
27147771 AAAGAAAACG-AAAGAAAAAT
1 AAAGAAAAAGAAAAGAAAAAT
27147791 AAAGAAAAAGAAAAGAAAA
1 AAAGAAAAAGAAAAGAAAA
27147810 GACGAGAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (21 bp):
AAAGAAAAAGAAAAGAAAAAT
Found at i:27157682 original size:15 final size:14
Alignment explanation
Indices: 27157632--27157686 Score: 67
Period size: 15 Copynumber: 3.8 Consensus size: 14
27157622 TGCATTGAGT
27157632 GAGAAAAAGAAAAA
1 GAGAAAAAGAAAAA
*
27157646 GAGAAAAACAAAAA
1 GAGAAAAAGAAAAA
27157660 GATTG-AAAAGAAAAA
1 GA--GAAAAAGAAAAA
27157675 GAGAGAAAAGAA
1 GAGA-AAAAGAA
27157687 TGATGAGAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 15 0.43
15 18 0.51
16 1 0.03
ACGTcount: A:0.73, C:0.02, G:0.22, T:0.04
Consensus pattern (14 bp):
GAGAAAAAGAAAAA
Found at i:27162989 original size:64 final size:64
Alignment explanation
Indices: 27162912--27163039 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
27162902 TGGCAGCAGG
27162912 TATGAAAGAGATTTTCTCGTTACTGCTCATTCTCCACACATTGAAGGTTTAAACTCATCTTGAT
1 TATGAAAGAGATTTTCTCGTTACTGCTCATTCTCCACACATTGAAGGTTTAAACTCATCTTGAT
27162976 TATGAAAGAGATTTTCTCGTTACTGCTCATTCTCCACACATTGAAGGTTTAAACTCATCTTGAT
1 TATGAAAGAGATTTTCTCGTTACTGCTCATTCTCCACACATTGAAGGTTTAAACTCATCTTGAT
27163040 GACAAGGGCT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (64 bp):
TATGAAAGAGATTTTCTCGTTACTGCTCATTCTCCACACATTGAAGGTTTAAACTCATCTTGAT
Found at i:27166958 original size:52 final size:51
Alignment explanation
Indices: 27166894--27167025 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 51
27166884 ATGAGGAAAC
* * * **
27166894 GAGTTACTTAATGAATGACTTAATTTAATGATGCAGACTTAAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTT-AACTAACATAA
* *
27166946 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAACTTAACTAACATAA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATAA
* * *
27166996 GAGTTACATAGTGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
27167026 CAGAACACAT
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
50 30 0.45
51 15 0.22
52 22 0.33
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATAA
Found at i:27173578 original size:25 final size:28
Alignment explanation
Indices: 27173549--27173634 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 28
27173539 GGTCAAACAA
27173549 TAATTAG-ATA-T-TATTAAATATGTCC
1 TAATTAGTATAGTGTATTAAATATGTCC
* *
27173574 TAATTAGTTTAGGTGTTTTAAATATGTCC
1 TAATTAGTATA-GTGTATTAAATATGTCC
*
27173603 TAATTAGT-TCAAGTGTTTTAAATATGTCC
1 TAATTAGTAT--AGTGTATTAAATATGTCC
27173632 TAA
1 TAA
27173635 ACTAATACAT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
25 7 0.13
26 2 0.04
28 2 0.04
29 41 0.77
30 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (28 bp):
TAATTAGTATAGTGTATTAAATATGTCC
Found at i:27173604 original size:29 final size:29
Alignment explanation
Indices: 27173562--27173634 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
27173552 TTAGATATTA
* *
27173562 TTAAATATGTCCTAATTAGTTTAGGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
27173591 TTAAATATGTCCTAATTAGTTCAAGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
27173620 TTAAATATGTCCTAA
1 TTAAATATGTCCTAA
27173635 ACTAATACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.45
Consensus pattern (29 bp):
TTAAATATGTCCTAATTAGTTCAAGTGTT
Found at i:27177800 original size:38 final size:37
Alignment explanation
Indices: 27177730--27177802 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
27177720 CTTTCATAAT
*
27177730 TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
1 TTCACTTTTCCACTTTCAATCACAATTCAATTCAAAA
27177767 TTCACTTTTCCA-TTTCTAAGTCA-ATATTCAATTCAA
1 TTCACTTTTCCACTTTC-AA-TCACA-ATTCAATTCAA
27177803 CCACACCTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 14 0.44
38 14 0.44
ACGTcount: A:0.33, C:0.23, G:0.01, T:0.42
Consensus pattern (37 bp):
TTCACTTTTCCACTTTCAATCACAATTCAATTCAAAA
Found at i:27177940 original size:45 final size:45
Alignment explanation
Indices: 27177876--27177965 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
27177866 AATAGATACT
* *
27177876 CGGTGGATTAAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATAAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
27177921 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
1 CGGTGGAATAAGCACATAGCAACCACCTTACTAATCAATGATGTC
27177966 TAGTTCACAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (45 bp):
CGGTGGAATAAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:27178086 original size:50 final size:50
Alignment explanation
Indices: 27177978--27178151 Score: 287
Period size: 50 Copynumber: 3.5 Consensus size: 50
27177968 GTTCACATAA
* * **
27177978 TAGCCTGTACATAGTACTACACATGTGACCATTATCATT-CAATACACGTAG
1 TAGCCTGCACATAGTACTACACATGCGA-CA-TATCATTCCGGTACACGTAG
27178029 TAGCCTGCACATAGTACTACACATGCGACATATCATTCCGGTACACGTAG
1 TAGCCTGCACATAGTACTACACATGCGACATATCATTCCGGTACACGTAG
27178079 TAGCCTGCACATAGTACTACACATGCGACATATCATTCCGGTACACGTAG
1 TAGCCTGCACATAGTACTACACATGCGACATATCATTCCGGTACACGTAG
27178129 TAGCCTGCACATAGTACTACACA
1 TAGCCTGCACATAGTACTACACA
27178152 CGTGACCATC
Statistics
Matches: 118, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
49 7 0.06
50 85 0.72
51 26 0.22
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGCCTGCACATAGTACTACACATGCGACATATCATTCCGGTACACGTAG
Found at i:27186857 original size:10 final size:10
Alignment explanation
Indices: 27186842--27186903 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
27186832 TTTGAACCAT
*
27186842 TACCAATTCG
1 TACCAATTCA
*
27186852 TACCAAATACCA
1 TACC-AAT-TCA
*
27186864 TACCATTTCA
1 TACCAATTCA
27186874 TACCAATTCCA
1 TACCAATT-CA
* *
27186885 TACCATTTCG
1 TACCAATTCA
27186895 TACCAATTC
1 TACCAATTC
27186904 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:27186887 original size:21 final size:21
Alignment explanation
Indices: 27186842--27186904 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
27186832 TTTGAACCAT
* *
27186842 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
27186864 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
27186885 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
27186905 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:27187234 original size:16 final size:16
Alignment explanation
Indices: 27187215--27187289 Score: 51
Period size: 18 Copynumber: 4.3 Consensus size: 16
27187205 AAAAAGTTCG
27187215 AAAAAAAATTTGAAAA
1 AAAAAAAATTTGAAAA
****
27187231 AAAAAACCAAAAACAAAA
1 AAAAAA--AATTTGAAAA
*
27187249 ACAAAAAATATTTCGAAAG
1 A-AAAAAA-ATTT-GAAAA
27187268 AAAAAAAATTTGAAAGA
1 AAAAAAAATTTGAAA-A
27187285 AAAAA
1 AAAAA
27187290 TTGTATACGG
Statistics
Matches: 43, Mismatches: 10, Indels: 11
0.67 0.16 0.17
Matches are distributed among these distances:
16 10 0.23
17 10 0.23
18 14 0.33
19 9 0.21
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.13
Consensus pattern (16 bp):
AAAAAAAATTTGAAAA
Found at i:27187273 original size:17 final size:16
Alignment explanation
Indices: 27187251--27187290 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
27187241 AAACAAAAAC
27187251 AAAAAATATTTCGAAAG
1 AAAAAATATTT-GAAAG
*
27187268 AAAAAAAATTTGAAAG
1 AAAAAATATTTGAAAG
27187284 AAAAAAT
1 AAAAAAT
27187291 TGTATACGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.68, C:0.03, G:0.10, T:0.20
Consensus pattern (16 bp):
AAAAAATATTTGAAAG
Found at i:27196885 original size:52 final size:51
Alignment explanation
Indices: 27196819--27196950 Score: 194
Period size: 50 Copynumber: 2.6 Consensus size: 51
27196809 ATGAAGAAAT
* *
27196819 GAGTTACTTAATGCATGACTTAATTTAATGATGCAGACTTAAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTT-AACTAACATGA
* *
27196871 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
* *
27196921 GAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
27196951 CAGAACACAT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
50 33 0.46
51 15 0.21
52 23 0.32
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:27197360 original size:33 final size:33
Alignment explanation
Indices: 27197323--27197390 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
27197313 TTAAGTCCAC
* *
27197323 CTCCATGTCTGTTCGGGAACTCCAA-GTGACAAG
1 CTCCATGGCTGTTCAGGAACTCCAATG-GACAAG
27197356 CTCCATGGCTGTTCAGGAACTCCAATGGACAAG
1 CTCCATGGCTGTTCAGGAACTCCAATGGACAAG
27197389 CT
1 CT
27197391 GTTCTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (33 bp):
CTCCATGGCTGTTCAGGAACTCCAATGGACAAG
Found at i:27227055 original size:7 final size:7
Alignment explanation
Indices: 27227043--27227067 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
27227033 TTAAGTTTAA
27227043 TTTTCTG
1 TTTTCTG
27227050 TTTTCTG
1 TTTTCTG
27227057 TTTTCTG
1 TTTTCTG
27227064 TTTT
1 TTTT
27227068 AATTTTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.76
Consensus pattern (7 bp):
TTTTCTG
Found at i:27229396 original size:13 final size:14
Alignment explanation
Indices: 27229372--27229401 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
27229362 TTAAGATGTG
27229372 TAAGTCTAGCTAGC
1 TAAGTCTAGCTAGC
27229386 TAAGT-TAGCTAGC
1 TAAGTCTAGCTAGC
27229399 TAA
1 TAA
27229402 TTCAAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (14 bp):
TAAGTCTAGCTAGC
Found at i:27235528 original size:56 final size:54
Alignment explanation
Indices: 27235461--27235789 Score: 344
Period size: 56 Copynumber: 6.2 Consensus size: 54
27235451 NNNNNNNNNN
27235461 ACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAACGCCATGTCCCAG
1 ACATGGTCTTACATGGGACCTCTCATAATCTC--TGATGCCAACGCCATGTCCCAG
* *
27235517 ACATGGTCTTACATGGGACCTCTCATAATCTCACCGATGCCAACGCCATGTCCCAA
1 ACATGGTCTTACATGGGACCTCTCATAATCT--CTGATGCCAACGCCATGTCCCAG
** * * * * *
27235573 ACATGGTCTTACA--CAAGCTCACAT-A--TC-GATGTCGATGCCATGTCCCAG
1 ACATGGTCTTACATGGGACCTCTCATAATCTCTGATGCCAACGCCATGTCCCAG
* * *
27235621 ACATGGTCTTACATGAGACCTCTC---ATCT-TGGTGCCAACGCCATGTCCTAG
1 ACATGGTCTTACATGGGACCTCTCATAATCTCTGATGCCAACGCCATGTCCCAG
* * *
27235671 ACATAGTCTTACATGGGA--TCTC-TCATCTC-GGTGCCAACGCCATGTCCCAG
1 ACATGGTCTTACATGGGACCTCTCATAATCTCTGATGCCAACGCCATGTCCCAG
* * *
27235721 ACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGTCAATGCCATGTCCCAA
1 ACATGGTCTTACATGGGACCTCTCATAATCTC--TGATGCCAACGCCATGTCCCAG
27235777 ACATGGTCTTACA
1 ACATGGTCTTACA
27235790 CAAGCTCACA
Statistics
Matches: 229, Mismatches: 28, Indels: 32
0.79 0.10 0.11
Matches are distributed among these distances:
48 35 0.15
49 1 0.00
50 79 0.34
51 1 0.00
52 4 0.02
53 7 0.03
54 7 0.03
56 94 0.41
58 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (54 bp):
ACATGGTCTTACATGGGACCTCTCATAATCTCTGATGCCAACGCCATGTCCCAG
Found at i:27235613 original size:48 final size:49
Alignment explanation
Indices: 27235489--27235835 Score: 261
Period size: 50 Copynumber: 6.8 Consensus size: 49
27235479 CCTCTCATAA
* * *
27235489 TCTCA-AT-GATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATATCGATGTCAATGCCATGTCCCAGACATGGTCTTACAT-GAACC
* * * * *
27235537 TCTCATAATCTCACCGATGCCAACGCCATGTCCCAAACATGGTCTTACA-CAAGC
1 TCTCAT-A--T---CGATGTCAATGCCATGTCCCAGACATGGTCTTACATGAACC
* *
27235591 TCACATATCGATGTCGATGCCATGTCCCAGACATGGTCTTACATGAGACC
1 TCTCATATCGATGTCAATGCCATGTCCCAGACATGGTCTTACATGA-ACC
* * * * * * * * *
27235641 TCTCATCTTGGTGCCAACGCCATGTCCTAGACATAGTCTTACATGGGATC
1 TCTCATATCGATGTCAATGCCATGTCCCAGACATGGTCTTACAT-GAACC
* * * * *
27235691 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATATCGATGTCAATGCCATGTCCCAGACATGGTCTTACAT-GAACC
* * *
27235741 TCTCATAATCTCAATGATGTCAATGCCATGTCCCAAACATGGTCTTACA-CAAGC
1 TCTCAT-A--TC---GATGTCAATGCCATGTCCCAGACATGGTCTTACATGAACC
* *
27235795 TCACATATCGATGTCGATGCCATGTCCCAGACATGGTCTTA
1 TCTCATATCGATGTCAATGCCATGTCCCAGACATGGTCTTA
27235836 TACGAGATCG
Statistics
Matches: 245, Mismatches: 37, Indels: 34
0.78 0.12 0.11
Matches are distributed among these distances:
48 66 0.27
49 1 0.00
50 92 0.38
51 4 0.02
52 1 0.00
53 4 0.02
54 14 0.06
56 63 0.26
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (49 bp):
TCTCATATCGATGTCAATGCCATGTCCCAGACATGGTCTTACATGAACC
Found at i:27235835 original size:104 final size:103
Alignment explanation
Indices: 27235505--27235835 Score: 438
Period size: 104 Copynumber: 3.2 Consensus size: 103
27235495 TGATGCCAAC
*
27235505 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCACCGATGCCAACGCCATGTCC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCA-TGATGCCAACGCCATGTCC
27235570 CAAACATGGTCTTACACAAGCTCACATATCGATGTCGAT
65 CAAACATGGTCTTACACAAGCTCACATATCGATGTCGAT
* * *
27235609 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTC---ATCT--TGGTGCCAACGCCATGTCCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCATGATGCCAACGCCATGTCCC
* * ** * * * * * * *
27235669 AGACATAGTCTTACATGGGATCTCTCATCTCGGTGCCAAC
66 AAACATGGTCTTACA--CAAGCTCACATATCGATGTCGAT
* *
27235709 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGTCAATGCCATGTCC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTC-ATGATGCCAACGCCATGTCC
27235774 CAAACATGGTCTTACACAAGCTCACATATCGATGTCGAT
65 CAAACATGGTCTTACACAAGCTCACATATCGATGTCGAT
27235813 GCCATGTCCCAGACATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTA
27235836 TACGAGATCG
Statistics
Matches: 188, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
98 30 0.16
100 49 0.26
101 4 0.02
103 4 0.02
104 72 0.38
106 29 0.15
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (103 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCATGATGCCAACGCCATGTCCC
AAACATGGTCTTACACAAGCTCACATATCGATGTCGAT
Found at i:27235855 original size:48 final size:48
Alignment explanation
Indices: 27235756--27235858 Score: 125
Period size: 48 Copynumber: 2.1 Consensus size: 48
27235746 TAATCTCAAT
* * *
27235756 GATGTCAATGCCATGTCCCAAACATGGTCTTACACAAGCTCACATATC
1 GATGTCAATGCCATGTCCCAAACATGGTCTTACACAAGATCACACACC
* * * * * *
27235804 GATGTCGATGCCATGTCCCAGACATGGTCTTATACGAGATCGCACGCC
1 GATGTCAATGCCATGTCCCAAACATGGTCTTACACAAGATCACACACC
27235852 GATGTCA
1 GATGTCA
27235859 TATCTCAGAT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (48 bp):
GATGTCAATGCCATGTCCCAAACATGGTCTTACACAAGATCACACACC
Found at i:27237749 original size:17 final size:17
Alignment explanation
Indices: 27237729--27237770 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
27237719 CTTGTCTCAA
*
27237729 ATGATTTATTGTATCTC
1 ATGATTTATTATATCTC
27237746 ATGATTTATTATATCTC
1 ATGATTTATTATATCTC
*
27237763 ATAATTTA
1 ATGATTTA
27237771 AAATTCCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (17 bp):
ATGATTTATTATATCTC
Found at i:27238931 original size:23 final size:23
Alignment explanation
Indices: 27238900--27238952 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
27238890 ACCTATTTTC
* *
27238900 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
27238923 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
27238946 TTACAGT
1 TTACAGT
27238953 GTTGGTGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:27243851 original size:8 final size:9
Alignment explanation
Indices: 27243828--27243860 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
27243818 TTTAATTTTC
27243828 AAAATTTAT
1 AAAATTTAT
27243837 AAAATTTAT
1 AAAATTTAT
*
27243846 -AAATTTAC
1 AAAATTTAT
27243854 AAAATTT
1 AAAATTT
27243861 TCACAGGCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAATTTAT
Found at i:27250201 original size:21 final size:20
Alignment explanation
Indices: 27250177--27250238 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 20
27250167 TGATAATGAG
*
27250177 AGAAAATGAGCGAAAAATAAA
1 AGAAAATGAGAGAAAAA-AAA
* *
27250198 AGAAATTGAGAGAAGAAAAA
1 AGAAAATGAGAGAAAAAAAA
*
27250218 AG-AAATGAGAGAAAAAGAA
1 AGAAAATGAGAGAAAAAAAA
27250237 AG
1 AG
27250239 CTTGAAGGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 16 0.46
20 5 0.14
21 14 0.40
ACGTcount: A:0.66, C:0.02, G:0.24, T:0.08
Consensus pattern (20 bp):
AGAAAATGAGAGAAAAAAAA
Found at i:27250226 original size:19 final size:20
Alignment explanation
Indices: 27250180--27250233 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
27250170 TAATGAGAGA
*
27250180 AAATGAGCGAAAAATAAAAG
1 AAATGAGAGAAAAATAAAAG
*
27250200 AAATTGAGAGAAGAA-AAAAG
1 AAA-TGAGAGAAAAATAAAAG
27250220 AAATGAGAGAAAAA
1 AAATGAGAGAAAAA
27250234 GAAAGCTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 10 0.33
20 11 0.37
21 9 0.30
ACGTcount: A:0.67, C:0.02, G:0.22, T:0.09
Consensus pattern (20 bp):
AAATGAGAGAAAAATAAAAG
Found at i:27258731 original size:51 final size:51
Alignment explanation
Indices: 27258650--27258886 Score: 273
Period size: 51 Copynumber: 4.7 Consensus size: 51
27258640 AAGTTGCTAA
* * *
27258650 ATCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCG
1 ATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCATAG
* * * *
27258701 ATCACATGTGTAGTACTATGTGCAGACTACTACGTGTACTGGA-ATG-ATAG
1 ATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATA-GCATAG
* * * *
27258751 GTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCG
1 ATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCATAG
* * ** * **
27258802 ATCACATGTGTAGTACTATATGCAGGCTACTACGTATATCGGATGAAAATAG
1 ATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT-AGCATAG
27258854 -TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 ATCACATGTGTAGTACTATGTGCAGGCTACTATG
27258887 TGANNNNNNN
Statistics
Matches: 154, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
50 41 0.27
51 110 0.71
52 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (51 bp):
ATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCATAG
Found at i:27258832 original size:101 final size:100
Alignment explanation
Indices: 27258651--27258886 Score: 368
Period size: 101 Copynumber: 2.3 Consensus size: 100
27258641 AGTTGCTAAA
*
27258651 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACATGTGTAGTA
* *
27258716 CTATGTGCAGACTACTACGTGTA-CTGGAATG-ATAGG
66 CTATATGCAGACTACTACGTATATC-GG-ATGAATA-G
*
27258752 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACATGTGTAGTA
*
27258817 CTATATGCAGGCTACTACGTATATCGGATGAAAATAG
66 CTATATGCAGACTACTACGTATATCGGATG--AATAG
27258854 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
27258887 TGANNNNNNN
Statistics
Matches: 125, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
100 3 0.02
101 85 0.68
102 34 0.27
103 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACATGTGTAGTA
CTATATGCAGACTACTACGTATATCGGATGAATAG
Found at i:27264636 original size:26 final size:27
Alignment explanation
Indices: 27264607--27264657 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
27264597 TTCCTTTCCT
* *
27264607 TAGATCGCGAC-AAGTCTTCCATTTCA
1 TAGATCGCCACAAAGGCTTCCATTTCA
*
27264633 TAGATTGCCACAAAGGCTTCCATTT
1 TAGATCGCCACAAAGGCTTCCATTT
27264658 TGTTGGCGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 9 0.43
27 12 0.57
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (27 bp):
TAGATCGCCACAAAGGCTTCCATTTCA
Found at i:27267968 original size:22 final size:22
Alignment explanation
Indices: 27267922--27267992 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
27267912 TGTTGAACGA
* *
27267922 TAGGCACCA-AAGTGTAAATCTG
1 TAGGCA-CAGAAGTGCAAATCAG
*
27267944 TAGGCACCGAAGTGCAGAA-CAG
1 TAGGCACAGAAGTGCA-AATCAG
*
27267966 TAGGCATAGAAGTGCAAATCAG
1 TAGGCACAGAAGTGCAAATCAG
27267988 TAGGC
1 TAGGC
27267993 TCGTAGTGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
21 3 0.07
22 36 0.88
23 2 0.05
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.17
Consensus pattern (22 bp):
TAGGCACAGAAGTGCAAATCAG
Found at i:27282176 original size:47 final size:44
Alignment explanation
Indices: 27282077--27282178 Score: 107
Period size: 44 Copynumber: 2.2 Consensus size: 44
27282067 AATATTTTAC
* * * *
27282077 TTAATTTGTCTAAATTATTACAGCAATATGAGTGTTTAAGTTAT
1 TTAATTTGTCTAAATTACTACAGCAATATAAGTGTTTAACTAAT
* *
27282121 TTAGTTTGTCTAGATTACTACAGCAA-ATTAAGTTGTCTTCAACTAAT
1 TTAATTTGTCTAAATTACTACAGCAATA-TAAG-TGT-TT-AACTAAT
27282168 TTAATTTGTCT
1 TTAATTTGTCT
27282179 TGTTTGCAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
43 1 0.02
44 26 0.55
45 3 0.06
46 2 0.04
47 15 0.32
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (44 bp):
TTAATTTGTCTAAATTACTACAGCAATATAAGTGTTTAACTAAT
Found at i:27285547 original size:21 final size:20
Alignment explanation
Indices: 27285502--27285538 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27285492 AGGTTGAAAA
*
27285502 AGAAAAAGAAAAGAATGATG
1 AGAAAAAGAAAAGAAAGATG
27285522 AGAAAAAGAAAA-AAAGA
1 AGAAAAAGAAAAGAAAGA
27285539 AGTGAGAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.05
Consensus pattern (20 bp):
AGAAAAAGAAAAGAAAGATG
Found at i:27288747 original size:47 final size:44
Alignment explanation
Indices: 27288646--27288749 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 44
27288636 AAACTATTTT
* * * *
27288646 ATTTAATTTGTCTAAATTAGTACAGCAATATGAGTGTTTAAGTT
1 ATTTAATTTGTCTAAATTACTACAGCAATATAAGTGTTTAACTA
* *
27288690 ATTTAGTTTGTCTAGATTACTACAGCAA-ATTAAGTTGTCTTCAACTA
1 ATTTAATTTGTCTAAATTACTACAGCAATA-TAAG-TGT-TT-AACTA
27288737 ATTTAATTTGTCT
1 ATTTAATTTGTCT
27288750 TGTTTGCAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
43 1 0.02
44 28 0.57
45 3 0.06
46 2 0.04
47 15 0.31
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.44
Consensus pattern (44 bp):
ATTTAATTTGTCTAAATTACTACAGCAATATAAGTGTTTAACTA
Found at i:27290548 original size:47 final size:49
Alignment explanation
Indices: 27290494--27290626 Score: 216
Period size: 50 Copynumber: 2.7 Consensus size: 49
27290484 AGTGAGTGTG
*
27290494 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCA-A-GATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGATGAGAGC
*
27290541 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGATGAGTGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CGATGAGAGC
*
27290591 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
27290627 NNNNNNNNNN
Statistics
Matches: 80, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
47 36 0.45
48 1 0.01
50 43 0.54
ACGTcount: A:0.26, C:0.23, G:0.32, T:0.20
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGATGAGAGC
Found at i:27291093 original size:45 final size:44
Alignment explanation
Indices: 27290961--27291104 Score: 143
Period size: 45 Copynumber: 3.2 Consensus size: 44
27290951 ATTAATGAAA
*
27290961 ATAAAGGTGATTGCTATGTGCTGATTTCACTGGATACCAATG-GTT
1 ATAAAGGTGATTGCTATGTGCTGATTTCACTGG-TACCATTGAG-T
* *
27291006 ATATAA-GTGATTACTATGTGCTGAATTCACCCT-GTACCATTGAGT
1 ATA-AAGGTGATTGCTATGTGCTGATTTCA--CTGGTACCATTGAGT
* *
27291051 ATAAAGGT-AGTTGCTATGTGCTGATTTCACTGAGTACTATTGATT
1 ATAAAGGTGA-TTGCTATGTGCTGATTTCACTG-GTACCATTGAGT
*
27291096 ATAAGGGTG
1 ATAAAGGTG
27291105 GTGTTGTGTG
Statistics
Matches: 82, Mismatches: 8, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
43 2 0.02
44 3 0.04
45 71 0.87
46 4 0.05
47 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (44 bp):
ATAAAGGTGATTGCTATGTGCTGATTTCACTGGTACCATTGAGT
Found at i:27294976 original size:13 final size:14
Alignment explanation
Indices: 27294958--27294986 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
27294948 AAAATTGATT
27294958 AAAAATCAAG-CAA
1 AAAAATCAAGTCAA
27294971 AAAAATCAAGTCAA
1 AAAAATCAAGTCAA
27294985 AA
1 AA
27294987 GCCACTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.69, C:0.14, G:0.07, T:0.10
Consensus pattern (14 bp):
AAAAATCAAGTCAA
Found at i:27301910 original size:20 final size:21
Alignment explanation
Indices: 27301885--27301934 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
27301875 ACACAATGTG
27301885 TGTGTTGCA-ACAC-ATAGCCT
1 TGTGTTG-AGACACAATAGCCT
*
27301905 TGTGTTGAGCCACAATAGCCT
1 TGTGTTGAGACACAATAGCCT
27301926 TGTGTTGAG
1 TGTGTTGAG
27301935 CCATAAGCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 10 0.37
21 16 0.59
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (21 bp):
TGTGTTGAGACACAATAGCCT
Found at i:27301946 original size:19 final size:21
Alignment explanation
Indices: 27301898--27301937 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
27301888 GTTGCAACAC
27301898 ATAGCCTTGTGTTGAGCCACA
1 ATAGCCTTGTGTTGAGCCACA
27301919 ATAGCCTTGTGTTGAGCCA
1 ATAGCCTTGTGTTGAGCCA
27301938 TAAGCCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (21 bp):
ATAGCCTTGTGTTGAGCCACA
Found at i:27304821 original size:21 final size:21
Alignment explanation
Indices: 27304790--27304843 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
27304780 TGAAAGAGGC
27304790 ACACAC-T-CGTGTACAAGAA
1 ACACACGTCCGTGTACAAGAA
**
27304809 ACACACGTCCGTGTGGAAGAA
1 ACACACGTCCGTGTACAAGAA
* *
27304830 GCACACGACCGTGT
1 ACACACGTCCGTGT
27304844 GGAGGAGACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 6 0.21
20 1 0.03
21 22 0.76
ACGTcount: A:0.33, C:0.28, G:0.24, T:0.15
Consensus pattern (21 bp):
ACACACGTCCGTGTACAAGAA
Found at i:27304844 original size:21 final size:21
Alignment explanation
Indices: 27304804--27304865 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
27304794 ACTCGTGTAC
*
27304804 AAGAAACACACGTCCGTGTGG
1 AAGAAACACACGACCGTGTGG
*
27304825 AAGAAGCACACGACCGTGTGG
1 AAGAAACACACGACCGTGTGG
* *
27304846 AGGAGACACAC-ACCCGTGTG
1 AAGAAACACACGA-CCGTGTG
27304866 TTTGAGTTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 1 0.03
21 34 0.97
ACGTcount: A:0.32, C:0.26, G:0.31, T:0.11
Consensus pattern (21 bp):
AAGAAACACACGACCGTGTGG
Found at i:27309679 original size:16 final size:15
Alignment explanation
Indices: 27309632--27309679 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
27309622 TTCTTTTTCA
*
27309632 TTCTTTCTTTCTTTT
1 TTCTTTGTTTCTTTT
27309647 TTCTTCTGTTT-TGTTT
1 TTCTT-TGTTTCT-TTT
27309663 TTACTTTGTTTCTTTT
1 TT-CTTTGTTTCTTTT
27309679 T
1 T
27309680 AATTCTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 6 0.21
16 18 0.64
17 4 0.14
ACGTcount: A:0.02, C:0.15, G:0.06, T:0.77
Consensus pattern (15 bp):
TTCTTTGTTTCTTTT
Found at i:27309722 original size:10 final size:11
Alignment explanation
Indices: 27309709--27309746 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
27309699 TTTGTTTTAT
27309709 TATATAT-TAA
1 TATATATATAA
27309719 TATAT-TATAA
1 TATATATATAA
27309729 TATA-ATATAA
1 TATATATATAA
27309739 TATATATA
1 TATATATA
27309747 CTTAACACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 1 0.04
10 21 0.84
11 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TATATATATAA
Found at i:27309726 original size:15 final size:16
Alignment explanation
Indices: 27309706--27309746 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
27309696 TATTTTGTTT
27309706 TATTATATAT-TAATA
1 TATTATATATATAATA
27309721 TATTATA-ATATAATA
1 TATTATATATATAATA
*
27309736 TAATATATATA
1 TATTATATATA
27309747 CTTAACACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 2 0.09
15 18 0.78
16 3 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TATTATATATATAATA
Found at i:27309865 original size:20 final size:20
Alignment explanation
Indices: 27309840--27309877 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27309830 GCATAATTGC
27309840 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27309860 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27309878 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27309994 original size:148 final size:148
Alignment explanation
Indices: 27309726--27310014 Score: 551
Period size: 148 Copynumber: 2.0 Consensus size: 148
27309716 TAATATATTA
*
27309726 TAATATAATATAATATATATACTTAACACTTAAGGTTTATTTTATAATATATATAATAAATTCAC
1 TAATATAATATAATATATATACTTAACACTTAAGGTTTACTTTATAATATATATAATAAATTCAC
*
27309791 AAAAAAATCTACCTTATGCCGCCTCATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTA
66 AAAAAAATCTACCTTATGCCACCTCATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTA
27309856 ATTTTTCTTTAGTCTCTT
131 ATTTTTCTTTAGTCTCTT
27309874 TAATATAATATAATATATATACTTAACACTTAAGGTTTACTTTATAATATATATAATAAATTCAC
1 TAATATAATATAATATATATACTTAACACTTAAGGTTTACTTTATAATATATATAATAAATTCAC
*
27309939 AAAAAAATCTACCTTATGCCACCTCATAAAGAAACAATGGCATCATTGCTTCTTTAGTCTCTTTA
66 AAAAAAATCTACCTTATGCCACCTCATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTA
27310004 ATTTTTCTTTA
131 ATTTTTCTTTA
27310015 ATCTATAACT
Statistics
Matches: 138, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 138 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.40
Consensus pattern (148 bp):
TAATATAATATAATATATATACTTAACACTTAAGGTTTACTTTATAATATATATAATAAATTCAC
AAAAAAATCTACCTTATGCCACCTCATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTA
ATTTTTCTTTAGTCTCTT
Found at i:27311048 original size:25 final size:25
Alignment explanation
Indices: 27311007--27311054 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
27310997 TTTTTATTTA
27311007 AAAATAATAAATTATACTTTTTATC
1 AAAATAATAAATTATACTTTTTATC
*
27311032 AAAA-AATTAATTGATACTTTTTA
1 AAAATAATAAATT-ATACTTTTTA
27311055 ATATATAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (25 bp):
AAAATAATAAATTATACTTTTTATC
Found at i:27311126 original size:122 final size:123
Alignment explanation
Indices: 27310934--27311179 Score: 485
Period size: 122 Copynumber: 2.0 Consensus size: 123
27310924 AAGTTGCAAA
27310934 ATATAAACTTTTAAGCAAATGTTAGTTGGGTTAAAGTAAAATTGATGTATTGCGAATTCTATTTT
1 ATATAAACTTTTAAGCAAATGTTAGTTGGGTTAAAGTAAAATTGATGTATTGCGAATTCTATTTT
27310999 TTTATTTAAAAATAATAAATTATACTTTTTATCAAAAAATTAATTGATACTTTTTAAT
66 TTTATTTAAAAATAATAAATTATACTTTTTATCAAAAAATTAATTGATACTTTTTAAT
27311057 ATATAAAC-TTTAAGCAAATGTTAGTTGGGTTAAAGTAAAATTGATGTATTGCGAATTCTATTTT
1 ATATAAACTTTTAAGCAAATGTTAGTTGGGTTAAAGTAAAATTGATGTATTGCGAATTCTATTTT
27311121 TTTATTTAAAAATAATAAATTATACTTTTTATCAAAAAATTAATTGATACTTTTTAAT
66 TTTATTTAAAAATAATAAATTATACTTTTTATCAAAAAATTAATTGATACTTTTTAAT
27311179 A
1 A
27311180 AATTTTTATA
Statistics
Matches: 123, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
122 115 0.93
123 8 0.07
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (123 bp):
ATATAAACTTTTAAGCAAATGTTAGTTGGGTTAAAGTAAAATTGATGTATTGCGAATTCTATTTT
TTTATTTAAAAATAATAAATTATACTTTTTATCAAAAAATTAATTGATACTTTTTAAT
Found at i:27311149 original size:27 final size:25
Alignment explanation
Indices: 27311127--27311181 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
27311117 TTTTTTTATT
27311127 TAAAAATAATAAATT-ATACTTTTTA
1 TAAAAA-AATAAATTGATACTTTTTA
* *
27311152 TCAAAAAATTAATTGATACTTTTTAA
1 TAAAAAAATAAATTGATACTTTTT-A
27311178 TAAA
1 TAAA
27311182 TTTTTATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 7 0.28
25 14 0.56
26 4 0.16
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (25 bp):
TAAAAAAATAAATTGATACTTTTTA
Found at i:27311170 original size:25 final size:25
Alignment explanation
Indices: 27311129--27311176 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
27311119 TTTTTATTTA
27311129 AAAATAATAAATTATACTTTTTATC
1 AAAATAATAAATTATACTTTTTATC
*
27311154 AAAA-AATTAATTGATACTTTTTA
1 AAAATAATAAATT-ATACTTTTTA
27311177 ATAAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (25 bp):
AAAATAATAAATTATACTTTTTATC
Found at i:27313166 original size:20 final size:20
Alignment explanation
Indices: 27313141--27313178 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27313131 GCATAATTGC
27313141 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27313161 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27313179 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27313252 original size:148 final size:148
Alignment explanation
Indices: 27313052--27320271 Score: 14440
Period size: 148 Copynumber: 48.8 Consensus size: 148
27313042 CGGCGGGGGC
27313052 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27313117 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27313182 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27313200 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27313265 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27313330 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27313348 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27313413 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27313478 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27313496 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27313561 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27313626 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27313644 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27313709 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27313774 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27313792 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27313857 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27313922 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27313940 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27314005 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27314070 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27314088 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27314153 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27314218 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27314236 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27314301 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27314366 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27314384 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27314449 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27314514 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27314532 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27314597 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27314662 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27314680 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27314745 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27314810 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27314828 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27314893 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27314958 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27314976 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27315041 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27315106 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27315124 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27315189 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27315254 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27315272 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27315337 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27315402 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27315420 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27315485 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27315550 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27315568 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27315633 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27315698 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27315716 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27315781 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27315846 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27315864 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27315929 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27315994 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27316012 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27316077 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27316142 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27316160 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27316225 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27316290 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27316308 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27316373 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27316438 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27316456 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27316521 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27316586 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27316604 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27316669 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27316734 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27316752 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27316817 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27316882 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27316900 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27316965 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27317030 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27317048 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27317113 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27317178 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27317196 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27317261 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27317326 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27317344 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27317409 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27317474 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27317492 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27317557 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27317622 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27317640 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27317705 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27317770 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27317788 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27317853 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27317918 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27317936 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27318001 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27318066 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27318084 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27318149 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27318214 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27318232 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27318297 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27318362 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27318380 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27318445 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27318510 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27318528 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27318593 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27318658 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27318676 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27318741 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27318806 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27318824 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27318889 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27318954 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27318972 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27319037 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27319102 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27319120 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27319185 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27319250 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27319268 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27319333 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27319398 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27319416 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27319481 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27319546 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27319564 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27319629 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27319694 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27319712 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27319777 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27319842 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27319860 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27319925 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27319990 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27320008 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27320073 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
27320138 ATATAATATATATACTTA
131 ATATAATATATATACTTA
27320156 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
1 ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
27320221 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTA
66 ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTA
27320272 ATCTATAACT
Statistics
Matches: 7072, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
148 7072 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (148 bp):
ACACTTAAGGTTTATTTTATAATATATATAATAAATTCACAAAAAAATCTACCTTATGCCGCCTC
ATAAAGAAACAATGGCATAATTGCTTCTTTAGTCTCTTTAATTTTTCTTTAGTCTCTTTAATATA
ATATAATATATATACTTA
Found at i:27313314 original size:20 final size:20
Alignment explanation
Indices: 27313289--27313326 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27313279 GCATAATTGC
27313289 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27313309 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27313327 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27313462 original size:20 final size:20
Alignment explanation
Indices: 27313437--27313474 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27313427 GCATAATTGC
27313437 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27313457 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27313475 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27313610 original size:20 final size:20
Alignment explanation
Indices: 27313585--27313622 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27313575 GCATAATTGC
27313585 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27313605 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27313623 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27313758 original size:20 final size:20
Alignment explanation
Indices: 27313733--27313770 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27313723 GCATAATTGC
27313733 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27313753 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27313771 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27313906 original size:20 final size:20
Alignment explanation
Indices: 27313881--27313918 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27313871 GCATAATTGC
27313881 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27313901 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27313919 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27314054 original size:20 final size:20
Alignment explanation
Indices: 27314029--27314066 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27314019 GCATAATTGC
27314029 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27314049 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27314067 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27314202 original size:20 final size:20
Alignment explanation
Indices: 27314177--27314214 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27314167 GCATAATTGC
27314177 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27314197 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27314215 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27314350 original size:20 final size:20
Alignment explanation
Indices: 27314325--27314362 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27314315 GCATAATTGC
27314325 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27314345 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27314363 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27314498 original size:20 final size:20
Alignment explanation
Indices: 27314473--27314510 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27314463 GCATAATTGC
27314473 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27314493 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27314511 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27314646 original size:20 final size:20
Alignment explanation
Indices: 27314621--27314658 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27314611 GCATAATTGC
27314621 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27314641 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27314659 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27314794 original size:20 final size:20
Alignment explanation
Indices: 27314769--27314806 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27314759 GCATAATTGC
27314769 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27314789 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27314807 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Done.