Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 83 of 136
Found at i:27314942 original size:20 final size:20
Alignment explanation
Indices: 27314917--27314954 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27314907 GCATAATTGC
27314917 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27314937 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27314955 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27315090 original size:20 final size:20
Alignment explanation
Indices: 27315065--27315102 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27315055 GCATAATTGC
27315065 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27315085 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27315103 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27315238 original size:20 final size:20
Alignment explanation
Indices: 27315213--27315250 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27315203 GCATAATTGC
27315213 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27315233 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27315251 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27315386 original size:20 final size:20
Alignment explanation
Indices: 27315361--27315398 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27315351 GCATAATTGC
27315361 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27315381 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27315399 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27315534 original size:20 final size:20
Alignment explanation
Indices: 27315509--27315546 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27315499 GCATAATTGC
27315509 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27315529 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27315547 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27315682 original size:20 final size:20
Alignment explanation
Indices: 27315657--27315694 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27315647 GCATAATTGC
27315657 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27315677 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27315695 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27315830 original size:20 final size:20
Alignment explanation
Indices: 27315805--27315842 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27315795 GCATAATTGC
27315805 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27315825 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27315843 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27315978 original size:20 final size:20
Alignment explanation
Indices: 27315953--27315990 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27315943 GCATAATTGC
27315953 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27315973 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27315991 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27316126 original size:20 final size:20
Alignment explanation
Indices: 27316101--27316138 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27316091 GCATAATTGC
27316101 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27316121 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27316139 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27316274 original size:20 final size:20
Alignment explanation
Indices: 27316249--27316286 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27316239 GCATAATTGC
27316249 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27316269 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27316287 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27316422 original size:20 final size:20
Alignment explanation
Indices: 27316397--27316434 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27316387 GCATAATTGC
27316397 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27316417 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27316435 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27316570 original size:20 final size:20
Alignment explanation
Indices: 27316545--27316582 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27316535 GCATAATTGC
27316545 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27316565 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27316583 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27316718 original size:20 final size:20
Alignment explanation
Indices: 27316693--27316730 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27316683 GCATAATTGC
27316693 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27316713 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27316731 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27316866 original size:20 final size:20
Alignment explanation
Indices: 27316841--27316878 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27316831 GCATAATTGC
27316841 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27316861 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27316879 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27317014 original size:20 final size:20
Alignment explanation
Indices: 27316989--27317026 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27316979 GCATAATTGC
27316989 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27317009 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27317027 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27317162 original size:20 final size:20
Alignment explanation
Indices: 27317137--27317174 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27317127 GCATAATTGC
27317137 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27317157 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27317175 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27317310 original size:20 final size:20
Alignment explanation
Indices: 27317285--27317322 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27317275 GCATAATTGC
27317285 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27317305 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27317323 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27317458 original size:20 final size:20
Alignment explanation
Indices: 27317433--27317470 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27317423 GCATAATTGC
27317433 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27317453 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27317471 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27317606 original size:20 final size:20
Alignment explanation
Indices: 27317581--27317618 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27317571 GCATAATTGC
27317581 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27317601 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27317619 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27317754 original size:20 final size:20
Alignment explanation
Indices: 27317729--27317766 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27317719 GCATAATTGC
27317729 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27317749 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27317767 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27317902 original size:20 final size:20
Alignment explanation
Indices: 27317877--27317914 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27317867 GCATAATTGC
27317877 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27317897 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27317915 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27318050 original size:20 final size:20
Alignment explanation
Indices: 27318025--27318062 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27318015 GCATAATTGC
27318025 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27318045 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27318063 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27318198 original size:20 final size:20
Alignment explanation
Indices: 27318173--27318210 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27318163 GCATAATTGC
27318173 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27318193 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27318211 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27318346 original size:20 final size:20
Alignment explanation
Indices: 27318321--27318358 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27318311 GCATAATTGC
27318321 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27318341 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27318359 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27318494 original size:20 final size:20
Alignment explanation
Indices: 27318469--27318506 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27318459 GCATAATTGC
27318469 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27318489 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27318507 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27318642 original size:20 final size:20
Alignment explanation
Indices: 27318617--27318654 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27318607 GCATAATTGC
27318617 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27318637 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27318655 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27318790 original size:20 final size:20
Alignment explanation
Indices: 27318765--27318802 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27318755 GCATAATTGC
27318765 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27318785 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27318803 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27318938 original size:20 final size:20
Alignment explanation
Indices: 27318913--27318950 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27318903 GCATAATTGC
27318913 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27318933 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27318951 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27319086 original size:20 final size:20
Alignment explanation
Indices: 27319061--27319098 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27319051 GCATAATTGC
27319061 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27319081 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27319099 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27319234 original size:20 final size:20
Alignment explanation
Indices: 27319209--27319246 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27319199 GCATAATTGC
27319209 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27319229 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27319247 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27319382 original size:20 final size:20
Alignment explanation
Indices: 27319357--27319394 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27319347 GCATAATTGC
27319357 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27319377 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27319395 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27319530 original size:20 final size:20
Alignment explanation
Indices: 27319505--27319542 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27319495 GCATAATTGC
27319505 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27319525 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27319543 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27319678 original size:20 final size:20
Alignment explanation
Indices: 27319653--27319690 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27319643 GCATAATTGC
27319653 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27319673 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27319691 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27319826 original size:20 final size:20
Alignment explanation
Indices: 27319801--27319838 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27319791 GCATAATTGC
27319801 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27319821 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27319839 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27319974 original size:20 final size:20
Alignment explanation
Indices: 27319949--27319986 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27319939 GCATAATTGC
27319949 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27319969 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27319987 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27320122 original size:20 final size:20
Alignment explanation
Indices: 27320097--27320134 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
27320087 GCATAATTGC
27320097 TTCTTTAGTCTCTTTAATTT
1 TTCTTTAGTCTCTTTAATTT
27320117 TTCTTTAGTCTCTTTAAT
1 TTCTTTAGTCTCTTTAAT
27320135 ATAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (20 bp):
TTCTTTAGTCTCTTTAATTT
Found at i:27321284 original size:27 final size:25
Alignment explanation
Indices: 27321262--27321316 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
27321252 TTTTTTTATT
27321262 TAAAAATAATAAATT-ATACTTTTTA
1 TAAAAA-AATAAATTGATACTTTTTA
* *
27321287 TCAAAAAATTAATTGATACTTTTTAA
1 TAAAAAAATAAATTGATACTTTTT-A
27321313 TAAA
1 TAAA
27321317 TTTTTATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 7 0.28
25 14 0.56
26 4 0.16
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (25 bp):
TAAAAAAATAAATTGATACTTTTTA
Found at i:27321305 original size:25 final size:25
Alignment explanation
Indices: 27321264--27321311 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
27321254 TTTTTATTTA
27321264 AAAATAATAAATTATACTTTTTATC
1 AAAATAATAAATTATACTTTTTATC
*
27321289 AAAA-AATTAATTGATACTTTTTA
1 AAAATAATAAATT-ATACTTTTTA
27321312 ATAAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (25 bp):
AAAATAATAAATTATACTTTTTATC
Found at i:27323860 original size:31 final size:30
Alignment explanation
Indices: 27323795--27323861 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
27323785 AAACTTTTAT
* * * * *
27323795 TTTTTTAGTTATTAAATTATTTGATTTAAT
1 TTTTTTAATTATTAAACTATTCGAATTAAA
27323825 TTTTTTAATTATTAAACTATTCGAAATTAAA
1 TTTTTTAATTATTAAACTATTCG-AATTAAA
27323856 TTTTTT
1 TTTTTT
27323862 GATCACCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 20 0.65
31 11 0.35
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (30 bp):
TTTTTTAATTATTAAACTATTCGAATTAAA
Found at i:27324063 original size:38 final size:38
Alignment explanation
Indices: 27324020--27324104 Score: 143
Period size: 38 Copynumber: 2.2 Consensus size: 38
27324010 TATGTTGAAT
***
27324020 AAACAAAATGGAAGAAAAAAACTGTGGTATGTACAATG
1 AAACAAAATGGAAGAAAAAAAAACTGGTATGTACAATG
27324058 AAACAAAATGGAAGAAAAAAAAACTGGTATGTACAATG
1 AAACAAAATGGAAGAAAAAAAAACTGGTATGTACAATG
27324096 AAACAAAAT
1 AAACAAAAT
27324105 AAGGAAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.58, C:0.08, G:0.18, T:0.16
Consensus pattern (38 bp):
AAACAAAATGGAAGAAAAAAAAACTGGTATGTACAATG
Found at i:27328050 original size:40 final size:39
Alignment explanation
Indices: 27327992--27328107 Score: 151
Period size: 39 Copynumber: 2.9 Consensus size: 39
27327982 AAAATTATTG
27327992 CATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCA
1 CATACGTGCCCCTGTTTGTACTTCGGTA-CCCTGAATGCA
* * * *
27328032 CATACGTGCTCCTATTTGTACTTCGATACCTTGAATGCA
1 CATACGTGCCCCTGTTTGTACTTCGGTACCCTGAATGCA
* * *
27328071 CATTCGTGCCCCTGTTTATACTTCGGTAACTCTGAAT
1 CATACGTGCCCCTGTTTGTACTTCGGT-ACCCTGAAT
27328108 CAAATAGTAT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.50
40 32 0.50
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.34
Consensus pattern (39 bp):
CATACGTGCCCCTGTTTGTACTTCGGTACCCTGAATGCA
Found at i:27333541 original size:52 final size:50
Alignment explanation
Indices: 27333421--27333543 Score: 158
Period size: 50 Copynumber: 2.4 Consensus size: 50
27333411 GCATTTAATA
* *
27333421 AAGTCATGCATTATGTAACTCTCATATTATTTAAGTTTACATCATAAATT
1 AAGTCATGCATTATGTAACTCCCATATTATTAAAGTTTACATCATAAATT
* * * *
27333471 ATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCACTAAATT
1 AAGTCATGCATTATGTAACTCCCATATTA-TTAAAGTTTACATCA-TAAATT
27333523 AAGTCATGCATTCA-GTAACTC
1 AAGTCATGCATT-ATGTAACTC
27333544 ATTTGTTCAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 25 0.40
51 13 0.21
52 23 0.37
53 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (50 bp):
AAGTCATGCATTATGTAACTCCCATATTATTAAAGTTTACATCATAAATT
Found at i:27339121 original size:35 final size:35
Alignment explanation
Indices: 27339070--27339142 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
27339060 GAATTATCTT
*
27339070 AATTTCATGACTTGAAATTAATTATTTAAACAAAC
1 AATTGCATGACTTGAAATTAATTATTTAAACAAAC
*
27339105 AATTGCATGATTTGAAATTAATTATTTAAACAAAC
1 AATTGCATGACTTGAAATTAATTATTTAAACAAAC
27339140 AAT
1 AAT
27339143 CTTGCAAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (35 bp):
AATTGCATGACTTGAAATTAATTATTTAAACAAAC
Found at i:27341063 original size:50 final size:50
Alignment explanation
Indices: 27340958--27341064 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 50
27340948 TTATTGAGAT
* * *
27340958 TATGAGAGGTCCCACATAAGACCATGCCTGGGACATGGCGTTGGTACCAA
1 TATGAGAGGTCCCACATAAGACCATGCCTGGGACATGGCATGGGCACCAA
* * * * * * *
27341008 GATGAGAGGTCCCCCGTAGGACCATGTCTGGGACATGGCATGGGCATCGA
1 TATGAGAGGTCCCACATAAGACCATGCCTGGGACATGGCATGGGCACCAA
27341058 TATGAGA
1 TATGAGA
27341065 ACTCTCATGT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.26, C:0.22, G:0.32, T:0.20
Consensus pattern (50 bp):
TATGAGAGGTCCCACATAAGACCATGCCTGGGACATGGCATGGGCACCAA
Found at i:27341380 original size:20 final size:20
Alignment explanation
Indices: 27341355--27341393 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
27341345 TGATTTATTT
27341355 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
27341375 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
27341394 GAAAAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:27371210 original size:26 final size:25
Alignment explanation
Indices: 27371181--27371251 Score: 97
Period size: 26 Copynumber: 2.8 Consensus size: 25
27371171 GTTGTACATA
* *
27371181 TATGCTCACACGAGTTGTGGAATGAG
1 TATGCTCACACGAGCTGTGAAATG-G
27371207 TATGCTCACACGAGCTGTGAAATGG
1 TATGCTCACACGAGCTGTGAAATGG
*
27371232 GACTGCTCACACGAGCTGTG
1 TA-TGCTCACACGAGCTGTG
27371252 TGTTAGAATG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 2 0.05
26 39 0.95
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (25 bp):
TATGCTCACACGAGCTGTGAAATGG
Found at i:27372405 original size:10 final size:10
Alignment explanation
Indices: 27372381--27372424 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
27372371 CCAAGCTCCA
*
27372381 TTCAGCTCAA
1 TTCAGCTCAT
* *
27372391 ATCAGCTCGT
1 TTCAGCTCAT
27372401 TTCAGCTCAT
1 TTCAGCTCAT
*
27372411 TTGAGCTCAT
1 TTCAGCTCAT
27372421 TTCA
1 TTCA
27372425 ATTTACTTCC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (10 bp):
TTCAGCTCAT
Found at i:27393740 original size:20 final size:20
Alignment explanation
Indices: 27393715--27393761 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
27393705 GTAAAGTGCA
27393715 AAAGTTGAGTTCTAATAGCT
1 AAAGTTGAGTTCTAATAGCT
27393735 AAAGTTGAGTTCTAATAGCT
1 AAAGTTGAGTTCTAATAGCT
27393755 AAAGTTG
1 AAAGTTG
27393762 TTAAATAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (20 bp):
AAAGTTGAGTTCTAATAGCT
Found at i:27394663 original size:14 final size:14
Alignment explanation
Indices: 27394644--27394671 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27394634 ATATGTATGT
27394644 GATTTGTATAATTG
1 GATTTGTATAATTG
27394658 GATTTGTATAATTG
1 GATTTGTATAATTG
27394672 CCAAGTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (14 bp):
GATTTGTATAATTG
Found at i:27394873 original size:25 final size:25
Alignment explanation
Indices: 27394804--27394873 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
27394794 GCGAACACAC
* * *
27394804 CACAGCTCATATGAGCTTACCGATT
1 CACAGCTCGTATGAGCATACCGACT
* *
27394829 CACAGCTCGTCA-GAGTATACTGACT
1 CACAGCTCGT-ATGAGCATACCGACT
*
27394854 CATAGCTCGTATGAGCATAC
1 CACAGCTCGTATGAGCATAC
27394874 ATGTATATGA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
24 1 0.03
25 34 0.94
26 1 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (25 bp):
CACAGCTCGTATGAGCATACCGACT
Found at i:27399552 original size:39 final size:39
Alignment explanation
Indices: 27399498--27399574 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
27399488 AACAATACTT
* *
27399498 AAAACTACTCAAAGTCATTCCCCAACTCATAAATAAAAG
1 AAAACTACTCAAAGTCACTCCCCAACTCAAAAATAAAAG
*
27399537 AAAACTACTCAAAGTCCCTCCCCAACTCAAAAATAAAA
1 AAAACTACTCAAAGTCACTCCCCAACTCAAAAATAAAA
27399575 AGATAGTACT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.49, C:0.29, G:0.04, T:0.18
Consensus pattern (39 bp):
AAAACTACTCAAAGTCACTCCCCAACTCAAAAATAAAAG
Found at i:27404716 original size:23 final size:23
Alignment explanation
Indices: 27404684--27404728 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
27404674 TATAATGTAT
*
27404684 TATTTGAATTGA-AATGGTATAA
1 TATTTGAATTGACAATAGTATAA
27404706 TATTATGAATTGACAATAGTATA
1 TATT-TGAATTGACAATAGTATA
27404729 TGAAATGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 8 0.40
24 8 0.40
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (23 bp):
TATTTGAATTGACAATAGTATAA
Found at i:27406176 original size:114 final size:114
Alignment explanation
Indices: 27405987--27406748 Score: 906
Period size: 114 Copynumber: 6.7 Consensus size: 114
27405977 TTGGTGGCAT
* * * *
27405987 TTATGG-AAAACGCCGCTAAAGGAGAGTATTAGAGGCGCTTTGTAAGAAACACCGTAAAATATCT
1 TTATGGAAAAACGCCGCTAAAGCACAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAAATATCT
*
27406051 TAACCAAAACGCAGCGTTTGGTCTTAATGTATATTAGAATTAGTGGCGC
66 TAACCAAAACGCAGCGTTTGGTCTTAATGTATATAAGAATTAGTGGCGC
* * * * *
27406100 TTGTGGAAAAACGACGCTATAGCACAGTATTAGCGGCG-TTT-TATAGAAAACGCTGCAAAATAT
1 TTATGGAAAAACGCCGCTAAAGCACAGTATTAGAGGCGCTTTGTA-AG-AAACGCCGCAAAATAT
* * * * *
27406163 CTTAACCAAAACGCATCATTTGGTCTTTAGGTATATAAGAATTAGTGGCGG
64 CTTAACCAAAACGCAGCGTTTGGTCTTAATGTATATAAGAATTAGTGGCGC
* * * * *
27406214 TTACGGAAAAATGCCGCTAAAGGAGAGTATTAGAGGCGCTTTGTAAGAAACGCCACAAAATATCT
1 TTATGGAAAAACGCCGCTAAAGCACAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAAATATCT
* *
27406279 TAACCAAAATGCAGCGTTTGGTCTTAATGTATATTAGAATTAGTGGCGC
66 TAACCAAAACGCAGCGTTTGGTCTTAATGTATATAAGAATTAGTGGCGC
* * *
27406328 TTGTGGAAAAACGCCGCTATAGCACAGTATTAGCGGCG-TTT-TATAGAAAACGCCGCAAAATAT
1 TTATGGAAAAACGCCGCTAAAGCACAGTATTAGAGGCGCTTTGTA-AG-AAACGCCGCAAAATAT
* * * *
27406391 CTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGG
64 CTTAACCAAAACGCAGCGTTTGGTCTTAATGTATATAAGAATTAGTGGCGC
* * *
27406442 TTATGGAAAAACGCCGCTAAATG-AAAGTATTAGAGGTGCTTTGTAAGAAACGCTGCAAAATATC
1 TTATGGAAAAACGCCGCTAAA-GCACAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAAATATC
* *
27406506 TTAACCAAAACGTAGCGTTTGGTCTTAATGTATATTAGAATTAGTGGCGC
65 TTAACCAAAACGCAGCGTTTGGTCTTAATGTATATAAGAATTAGTGGCGC
* * * * * * * * * *
27406556 TTGTGGAAAAACGCTGCTATAGCATAGTATTGGCGGCGTTTTGTATGAAATGCCGCAAGATATCT
1 TTATGGAAAAACGCCGCTAAAGCACAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAAATATCT
** * * * * *
27406621 TAACCAAAACGCATAGTTTGGTCTTGATGAATATAAAAATTACTGGCGG
66 TAACCAAAACGCAGCGTTTGGTCTTAATGTATATAAGAATTAGTGGCGC
* * * * * * *
27406670 TTACGAAAAAAGGCCGCTAAAACAGAGTATTAGAGGCGCTTTGTAAGAATCGCCGCAAAATATTT
1 TTATGGAAAAACGCCGCTAAAGCACAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAAATATCT
*
27406735 TAACTAAAACGCAG
66 TAACCAAAACGCAG
27406749 TTGGCGCTCA
Statistics
Matches: 541, Mismatches: 97, Indels: 21
0.82 0.15 0.03
Matches are distributed among these distances:
112 4 0.01
113 16 0.03
114 506 0.94
115 11 0.02
116 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27
Consensus pattern (114 bp):
TTATGGAAAAACGCCGCTAAAGCACAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAAATATCT
TAACCAAAACGCAGCGTTTGGTCTTAATGTATATAAGAATTAGTGGCGC
Found at i:27406297 original size:228 final size:227
Alignment explanation
Indices: 27405892--27406748 Score: 1186
Period size: 228 Copynumber: 3.8 Consensus size: 227
27405882 AATGCCATTA
* * * * * * * *
27405892 TATAGCACA--ATTAGCGGCG-TTTATTTGTAAGCGCTGCAAAAAATGTTAGCCAAAACGCATCG
1 TATAGCACAGTATTAGCGGCGTTTTA-TAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCA
** ** * * * ** *
27405954 TTTATTCCCGAGGTATATTAGACTTGGTGGCATTTATGG-AAAACGCCGCTAAAGGAGAGTATTA
65 TTTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGAGAGTATTA
* *
27406018 GAGGCGCTTTGTAAGAAACACCGTAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTAT
130 GAGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTAT
27406083 ATTAGAATTAGTGGCGCTTGTGGAAAAACGACGC
195 ATTAGAATTAGTGGCGCTTGTGGAAAAACG-CGC
*
27406117 TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCTGCAAAATATCTTAACCAAAACGCATCAT
1 TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCAT
* *
27406182 TTGGTCTTTAGGTATATAAGAATTAGTGGCGGTTACGGAAAAATGCCGCTAAAGGAGAGTATTAG
66 TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGAGAGTATTAG
* *
27406247 AGGCGCTTTGTAAGAAACGCCACAAAATATCTTAACCAAAATGCAGCGTTTGGTCTTAATGTATA
131 AGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTATA
27406312 TTAGAATTAGTGGCGCTTGTGGAAAAACGCCGC
196 TTAGAATTAGTGGCGCTTGTGGAAAAACG-CGC
*
27406345 TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCGT
1 TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCAT
* * *
27406410 TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTATGGAAAAACGCCGCTAAATGAAAGTATTAG
66 TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGAGAGTATTAG
* * *
27406475 AGGTGCTTTGTAAGAAACGCTGCAAAATATCTTAACCAAAACGTAGCGTTTGGTCTTAATGTATA
131 AGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTATA
27406540 TTAGAATTAGTGGCGCTTGTGGAAAAACGCTGC
196 TTAGAATTAGTGGCGCTTGTGGAAAAACGC-GC
* * * * *
27406573 TATAGCATAGTATTGGCGGCGTTTTGTATG-AAATGCCGCAAGATATCTTAACCAAAACGCAT-A
1 TATAGCACAGTATTAGCGGCGTTTTATA-GAAAACGCCGCAAAATATCTTAACCAAAACGCATCA
* * * * * * **
27406636 GTTTGGTCTTGATGAATATAAAAATTACTGGCGGTTACGAAAAAAGGCCGCTAAAACAGAGTATT
65 -TTTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGAGAGTATT
* * *
27406701 AGAGGCGCTTTGTAAGAATCGCCGCAAAATATTTTAACTAAAACGCAG
129 AGAGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAG
27406749 TTGGCGCTCA
Statistics
Matches: 567, Mismatches: 58, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
225 9 0.02
227 70 0.12
228 487 0.86
229 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (227 bp):
TATAGCACAGTATTAGCGGCGTTTTATAGAAAACGCCGCAAAATATCTTAACCAAAACGCATCAT
TTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGAGAGTATTAG
AGGCGCTTTGTAAGAAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTATA
TTAGAATTAGTGGCGCTTGTGGAAAAACGCGC
Found at i:27407081 original size:13 final size:14
Alignment explanation
Indices: 27407053--27407123 Score: 63
Period size: 14 Copynumber: 5.1 Consensus size: 14
27407043 TTATGATGTA
* *
27407053 GGTTTAGTGTTTTG
1 GGTTTAGGGTTTAG
*
27407067 GGTTTAGGGTTTGG
1 GGTTTAGGGTTTAG
* *
27407081 GAGTTTTGGGTTTAA
1 G-GTTTAGGGTTTAG
*
27407096 GGTTTGGGGTTT-G
1 GGTTTAGGGTTTAG
*
27407109 GGTTTGGGGTTTAG
1 GGTTTAGGGTTTAG
27407123 G
1 G
27407124 TAACTTTAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
13 12 0.25
14 25 0.52
15 11 0.23
ACGTcount: A:0.08, C:0.00, G:0.45, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGTTTAG
Found at i:27407087 original size:22 final size:21
Alignment explanation
Indices: 27407061--27407120 Score: 86
Period size: 22 Copynumber: 2.9 Consensus size: 21
27407051 TAGGTTTAGT
27407061 GTTTTGGGTTTAGGGTTTGGG
1 GTTTTGGGTTTAGGGTTTGGG
*
27407082 AGTTTTGGGTTTAAGGTTTGGG
1 -GTTTTGGGTTTAGGGTTTGGG
*
27407104 G-TTTGGGTTTGGGGTTT
1 GTTTTGGGTTTAGGGTTT
27407121 AGGTAACTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
20 14 0.40
21 1 0.03
22 20 0.57
ACGTcount: A:0.07, C:0.00, G:0.45, T:0.48
Consensus pattern (21 bp):
GTTTTGGGTTTAGGGTTTGGG
Found at i:27407093 original size:7 final size:7
Alignment explanation
Indices: 27407061--27407120 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
27407051 TAGGTTTAGT
27407061 GTTTTGG
1 GTTTTGG
*
27407068 GTTTAGG
1 GTTTTGG
*
27407075 GTTTGGG
1 GTTTTGG
27407082 AGTTTTGG
1 -GTTTTGG
**
27407090 GTTTAAG
1 GTTTTGG
27407097 G-TTTGG
1 GTTTTGG
*
27407103 GGTTTGG
1 GTTTTGG
*
27407110 GTTTGGG
1 GTTTTGG
27407117 GTTT
1 GTTT
27407121 AGGTAACTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
6 4 0.10
7 32 0.76
8 6 0.14
ACGTcount: A:0.07, C:0.00, G:0.45, T:0.48
Consensus pattern (7 bp):
GTTTTGG
Found at i:27407670 original size:12 final size:12
Alignment explanation
Indices: 27407653--27407679 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
27407643 AAATTTTTTA
27407653 AATAATATTAAT
1 AATAATATTAAT
27407665 AATAATATTAAT
1 AATAATATTAAT
27407677 AAT
1 AAT
27407680 GTCATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:27410781 original size:21 final size:21
Alignment explanation
Indices: 27410725--27410791 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
27410715 AACTTAAAGT
* *
27410725 AGAGGCGGAAGCGAGGGAAGC
1 AGAGGCTGCAGCGAGGGAAGC
* * *
27410746 AGCGGCTGCAACGAGGGAAGT
1 AGAGGCTGCAGCGAGGGAAGC
* * *
27410767 GGAGGCTGTAGCGAGAGAAGC
1 AGAGGCTGCAGCGAGGGAAGC
27410788 AGAG
1 AGAG
27410792 CAGAGCAAAA
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.31, C:0.15, G:0.48, T:0.06
Consensus pattern (21 bp):
AGAGGCTGCAGCGAGGGAAGC
Found at i:27411161 original size:64 final size:65
Alignment explanation
Indices: 27411087--27411221 Score: 263
Period size: 64 Copynumber: 2.1 Consensus size: 65
27411077 AAAAAATCCC
27411087 AAAAATAGTGGCGTTTTTGTATAAAAACGCCGCTAAAGAACATGTTCTTTAGCA-CGCTTAGAAA
1 AAAAATAGTGGCGTTTTTGTATAAAAACGCCGCTAAAGAACATGTTCTTTAGCAGCGCTTAGAAA
27411151 AAAAATAGTGGCGTTTTTGTATAAAAACGCCGCTAAAGAACATGTTCTTTAGCAGCGCTTAGAAA
1 AAAAATAGTGGCGTTTTTGTATAAAAACGCCGCTAAAGAACATGTTCTTTAGCAGCGCTTAGAAA
27411216 AAAAAT
1 AAAAAT
27411222 GCCGCTAAAG
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 54 0.77
65 16 0.23
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (65 bp):
AAAAATAGTGGCGTTTTTGTATAAAAACGCCGCTAAAGAACATGTTCTTTAGCAGCGCTTAGAAA
Found at i:27413020 original size:48 final size:48
Alignment explanation
Indices: 27412949--27413118 Score: 196
Period size: 48 Copynumber: 3.5 Consensus size: 48
27412939 GGTTGCATAT
* * *
27412949 GTGGCACGGACTATGTGTAGGCCACCAATATTCTTTTAAGATACAACG
1 GTGGCACGGACTATGTGCAGGCCACCAATATTCTGTTAAGATACAAAG
* *
27412997 GTGGCACGGACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGG
1 GTGGCACGGACTATGTGCAGGCCACCAATATTCTGTTAAGATACAAAG
* * * * ** *
27413045 GTGGCACGGACTATGTACAGGCCATCAAGAGTCTGTTATTACACAAAG
1 GTGGCACGGACTATGTGCAGGCCACCAATATTCTGTTAAGATACAAAG
* * * *
27413093 GTGGTACGGACTGTATGTAGGCCACC
1 GTGGCACGGACTATGTGCAGGCCACC
27413119 GAAAAATCTG
Statistics
Matches: 103, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 103 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
GTGGCACGGACTATGTGCAGGCCACCAATATTCTGTTAAGATACAAAG
Found at i:27421158 original size:21 final size:22
Alignment explanation
Indices: 27421133--27421180 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
27421123 GAAGATTTTG
27421133 GATTACCACT-CTATCTTTGGT
1 GATTACCACTCCTATCTTTGGT
*
27421154 GATTA-CATTCCTATCTTTGGT
1 GATTACCACTCCTATCTTTGGT
27421175 GATTAC
1 GATTAC
27421181 ATTCATCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (22 bp):
GATTACCACTCCTATCTTTGGT
Found at i:27421181 original size:21 final size:21
Alignment explanation
Indices: 27421143--27421184 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
27421133 GATTACCACT
27421143 CTATCTTTGGTGATTACATTC
1 CTATCTTTGGTGATTACATTC
27421164 CTATCTTTGGTGATTACATTC
1 CTATCTTTGGTGATTACATTC
27421185 ATCATATCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (21 bp):
CTATCTTTGGTGATTACATTC
Found at i:27426797 original size:10 final size:10
Alignment explanation
Indices: 27426782--27426832 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
27426772 AAATGCCAAA
27426782 TTTTATAATT
1 TTTTATAATT
27426792 TTTTATAA-T
1 TTTTATAATT
* *
27426801 TTTAATTA-T
1 TTTTATAATT
27426810 TTTTATAATT
1 TTTTATAATT
* *
27426820 TTTAATAGTT
1 TTTTATAATT
27426830 TTT
1 TTT
27426833 GTTCTGTTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 14 0.41
10 20 0.59
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTTATAATT
Found at i:27426803 original size:9 final size:9
Alignment explanation
Indices: 27426782--27426823 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
27426772 AAATGCCAAA
27426782 TTTTATAATT
1 TTTTATAA-T
27426792 TTTTATAAT
1 TTTTATAAT
* *
27426801 TTTAATTAT
1 TTTTATAAT
27426810 TTTTATAAT
1 TTTTATAAT
27426819 TTTTA
1 TTTTA
27426824 ATAGTTTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTTATAAT
Found at i:27426803 original size:18 final size:19
Alignment explanation
Indices: 27426780--27426832 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
27426770 AAAAATGCCA
27426780 AATTTTATAAT-TTTTTAT
1 AATTTTATAATATTTTTAT
*
27426798 AATTTTA-ATTATTTTTAT
1 AATTTTATAATATTTTTAT
27426816 AATTTT-TAATAGTTTTT
1 AATTTTATAATA-TTTTT
27426833 GTTCTGTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 2 0.07
18 23 0.77
19 5 0.17
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
AATTTTATAATATTTTTAT
Found at i:27428823 original size:38 final size:38
Alignment explanation
Indices: 27428730--27428807 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
27428720 TCATTTTGGC
27428730 TTTGATCATTCACAATTTTTTCTTTTCCTAATTTCAAG
1 TTTGATCATTCACAATTTTTTCTTTTCCTAATTTCAAG
27428768 TTTGATCATTCACAATTTTTTCTTTTCCTAATTTCAAG
1 TTTGATCATTCACAATTTTTTCTTTTCCTAATTTCAAG
27428806 TT
1 TT
27428808 CTGGTTATTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.54
Consensus pattern (38 bp):
TTTGATCATTCACAATTTTTTCTTTTCCTAATTTCAAG
Found at i:27430451 original size:16 final size:16
Alignment explanation
Indices: 27430430--27430460 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27430420 GATTTTTTTT
27430430 ATAAAAATCGTAAAAA
1 ATAAAAATCGTAAAAA
*
27430446 ATAAAAATTGTAAAA
1 ATAAAAATCGTAAAA
27430461 TTTTATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (16 bp):
ATAAAAATCGTAAAAA
Found at i:27432376 original size:39 final size:39
Alignment explanation
Indices: 27432322--27432400 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
27432312 GATATGATTA
*
27432322 TGTAATCTTAGAGTTCTAATTGTATACAGCTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAACTTTTAATTG
27432361 TGTAATCTTAGAGTTCTAATTGTATACAACTTTTAATTG
1 TGTAATCTTAGAGTTCTAATTGTATACAACTTTTAATTG
27432400 T
1 T
27432401 ATCCATTGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (39 bp):
TGTAATCTTAGAGTTCTAATTGTATACAACTTTTAATTG
Found at i:27432722 original size:48 final size:49
Alignment explanation
Indices: 27432631--27432723 Score: 152
Period size: 48 Copynumber: 1.9 Consensus size: 49
27432621 GGAATTCTGC
* **
27432631 TGAATCCTTTATCGTTGCGAGATTAGGCTAACTTAGGTGTTTTTACTGT
1 TGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTACTGT
27432680 TGAATCCTTTATCATTGCGAG-TTAGGCTAACTTAGGCATTTTTA
1 TGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTA
27432724 AGCAAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
48 21 0.51
49 20 0.49
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (49 bp):
TGAATCCTTTATCATTGCGAGATTAGGCTAACTTAGGCATTTTTACTGT
Found at i:27437558 original size:50 final size:50
Alignment explanation
Indices: 27437492--27437673 Score: 186
Period size: 51 Copynumber: 3.6 Consensus size: 50
27437482 TGAAAGTGAT
* *
27437492 GGTCATGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAA
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAAA
* * * * * ***
27437542 GGTCGCATGTGTAGTACTATGTTCAGGCTACTATGCGTACCGG-ATAGCTTC
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAT-G-AAA
* * ** * *
27437593 GATCACGTGTGTAGTACTATATGCAGGCTACTACGTGTATTGGATATTAAT
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-ATGAAA
27437644 GGTCACGTGTGTAGTACTATGTGCAGGCTA
1 GGTCACGTGTGTAGTACTATGTGCAGGCTA
27437674 TTAAGTGAAC
Statistics
Matches: 103, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
49 2 0.02
50 37 0.36
51 62 0.60
53 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (50 bp):
GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAAA
Found at i:27440965 original size:14 final size:14
Alignment explanation
Indices: 27440946--27440976 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
27440936 TTTGATTGGT
*
27440946 GGAAAATATTTTCC
1 GGAAAATATTTTAC
27440960 GGAAAATATTTTAC
1 GGAAAATATTTTAC
27440974 GGA
1 GGA
27440977 TTTTCCAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (14 bp):
GGAAAATATTTTAC
Found at i:27443992 original size:20 final size:20
Alignment explanation
Indices: 27443967--27444006 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
27443957 ATTTTTTTCC
*
27443967 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
27443987 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
27444007 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:27444013 original size:14 final size:14
Alignment explanation
Indices: 27443990--27444029 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
27443980 ACAGAAAAGT
*
27443990 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
27444004 AAATCATTTTACGG
1 AAAACATTTTACAG
27444018 AAAACATTTTAC
1 AAAACATTTTAC
27444030 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:27447674 original size:44 final size:43
Alignment explanation
Indices: 27447567--27447693 Score: 118
Period size: 43 Copynumber: 2.9 Consensus size: 43
27447557 TCGTACAATG
* * *
27447567 CCAACGTCCCAGACGTGGTCTTACATGTAATTACATAACGATG
1 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATAACGATC
* * * *
27447610 CC-ACTGTCCCAGATAG-GGTCTTATACGTAAGTCACA-AGTCGCTC
1 CCAAC-GTCCCAGA-CGTGGTCTTACACGTAA-TCACATA-ACGATC
27447654 CCAACGTCCCAGACGTGGTCTTACACGATAA-CACATAACG
1 CCAACGTCCCAGACGTGGTCTTACACG-TAATCACATAACG
27447694 TAATCCTATG
Statistics
Matches: 66, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
42 2 0.03
43 30 0.45
44 29 0.44
45 5 0.08
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
CCAACGTCCCAGACGTGGTCTTACACGTAATCACATAACGATC
Found at i:27449320 original size:25 final size:25
Alignment explanation
Indices: 27449279--27449344 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
27449269 ATGCTTATTT
*
27449279 GAGCTA-AAGATCTGTATGCTCTGAC
1 GAGCTATAA-ATCGGTATGCTCTGAC
* * *
27449304 GAGTTATAAATTGGTATGCTCTTAC
1 GAGCTATAAATCGGTATGCTCTGAC
27449329 GAGCTATAAATCGGTA
1 GAGCTATAAATCGGTA
27449345 ACCCTAATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 32 0.94
26 2 0.06
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTATAAATCGGTATGCTCTGAC
Found at i:27453657 original size:218 final size:218
Alignment explanation
Indices: 27453279--27453711 Score: 866
Period size: 218 Copynumber: 2.0 Consensus size: 218
27453269 TTGGACTCTC
27453279 AAAAGCTTAAAATATATGTTTTGTTTCTCCCTTTGATCATCAAATTAACATTACATCACTGGACT
1 AAAAGCTTAAAATATATGTTTTGTTTCTCCCTTTGATCATCAAATTAACATTACATCACTGGACT
27453344 TATTCACTGATAGATAGGTTCCATTGCTGATTTTCTGGAACTGCATATATTGCAATGCAGACTGC
66 TATTCACTGATAGATAGGTTCCATTGCTGATTTTCTGGAACTGCATATATTGCAATGCAGACTGC
27453409 AGTTTTGACTTCAAAGGCTACACTTTTGTAGGGAAGTAGTCATCTCTATCAAACTTTATTGTGAA
131 AGTTTTGACTTCAAAGGCTACACTTTTGTAGGGAAGTAGTCATCTCTATCAAACTTTATTGTGAA
27453474 CAATATATATTATTTTATTTTTA
196 CAATATATATTATTTTATTTTTA
27453497 AAAAGCTTAAAATATATGTTTTGTTTCTCCCTTTGATCATCAAATTAACATTACATCACTGGACT
1 AAAAGCTTAAAATATATGTTTTGTTTCTCCCTTTGATCATCAAATTAACATTACATCACTGGACT
27453562 TATTCACTGATAGATAGGTTCCATTGCTGATTTTCTGGAACTGCATATATTGCAATGCAGACTGC
66 TATTCACTGATAGATAGGTTCCATTGCTGATTTTCTGGAACTGCATATATTGCAATGCAGACTGC
27453627 AGTTTTGACTTCAAAGGCTACACTTTTGTAGGGAAGTAGTCATCTCTATCAAACTTTATTGTGAA
131 AGTTTTGACTTCAAAGGCTACACTTTTGTAGGGAAGTAGTCATCTCTATCAAACTTTATTGTGAA
27453692 CAATATATATTATTTTATTT
196 CAATATATATTATTTTATTT
27453712 AAAATACACA
Statistics
Matches: 215, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 215 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.39
Consensus pattern (218 bp):
AAAAGCTTAAAATATATGTTTTGTTTCTCCCTTTGATCATCAAATTAACATTACATCACTGGACT
TATTCACTGATAGATAGGTTCCATTGCTGATTTTCTGGAACTGCATATATTGCAATGCAGACTGC
AGTTTTGACTTCAAAGGCTACACTTTTGTAGGGAAGTAGTCATCTCTATCAAACTTTATTGTGAA
CAATATATATTATTTTATTTTTA
Found at i:27455964 original size:12 final size:12
Alignment explanation
Indices: 27455947--27455979 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
27455937 CGGCCCGCCC
27455947 ATATTAATTTTT
1 ATATTAATTTTT
27455959 ATATT-ATTTTT
1 ATATTAATTTTT
27455970 ATA-TAATTTT
1 ATATTAATTTT
27455980 CAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:27456137 original size:30 final size:30
Alignment explanation
Indices: 27456103--27456165 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
27456093 ACTTAACAAG
27456103 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
27456133 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
27456163 CAA
1 CAA
27456166 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:27456220 original size:22 final size:22
Alignment explanation
Indices: 27456195--27456237 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27456185 TATCCAAACA
*
27456195 ATAATAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* *
27456217 ATAACAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
27456238 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:27459271 original size:22 final size:22
Alignment explanation
Indices: 27459246--27459288 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27459236 TATCCAAACA
27459246 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
27459268 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
27459289 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:27464106 original size:45 final size:45
Alignment explanation
Indices: 27464042--27464135 Score: 170
Period size: 45 Copynumber: 2.1 Consensus size: 45
27464032 AACAGATACT
*
27464042 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTC
*
27464087 CGGTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTC
27464132 CGGT
1 CGGT
27464136 TTGCATGGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTC
Found at i:27464245 original size:51 final size:51
Alignment explanation
Indices: 27464138--27464270 Score: 137
Period size: 51 Copynumber: 2.6 Consensus size: 51
27464128 TGTTCGGTTT
* * * *
27464138 GCATGGTAGCCTGCAAATAGTACTACACATGTGACCATTATCATCCGATAC
1 GCATAGTAGCCTGCACATAGTACTACACACGTGACCATAATCATCCGATAC
* *
27464189 ACATAGTAGCCTGCACATAGTACTACACACGTGATCGA-AA-CTATCCTG-TAC
1 GCATAGTAGCCTGCACATAGTACTACACACGTGA-CCATAATC-ATCC-GATAC
*
27464240 GCATAGTAGCCTACACATAGTAGCCTACACA
1 GCATAGTAGCCTGCACATAGTA--CTACACA
27464271 TAGTACTACA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
50 1 0.01
51 58 0.84
52 3 0.04
53 7 0.10
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (51 bp):
GCATAGTAGCCTGCACATAGTACTACACACGTGACCATAATCATCCGATAC
Found at i:27464260 original size:14 final size:14
Alignment explanation
Indices: 27464241--27464283 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
27464231 ATCCTGTACG
27464241 CATAGTAGCCTACA
1 CATAGTAGCCTACA
27464255 CATAGTAGCCTACA
1 CATAGTAGCCTACA
27464269 CATAGTA--CTACA
1 CATAGTAGCCTACA
27464281 CAT
1 CAT
27464284 GCGACCTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.28
14 21 0.72
ACGTcount: A:0.37, C:0.28, G:0.12, T:0.23
Consensus pattern (14 bp):
CATAGTAGCCTACA
Found at i:27467469 original size:20 final size:21
Alignment explanation
Indices: 27467444--27467485 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
27467434 AATAAAAAGA
27467444 TGGAAACGAGCTC-ATTGAGC
1 TGGAAACGAGCTCAATTGAGC
27467464 TGGAAACGAGCTCAATTGAGC
1 TGGAAACGAGCTCAATTGAGC
27467485 T
1 T
27467486 CAACAAGCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (21 bp):
TGGAAACGAGCTCAATTGAGC
Found at i:27468517 original size:23 final size:23
Alignment explanation
Indices: 27468491--27468534 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
27468481 AAAGCCATTA
27468491 TGGCATATTCTATGATGCCTTCG
1 TGGCATATTCTATGATGCCTTCG
* * *
27468514 TGGCGTATTTTGTGATGCCTT
1 TGGCATATTCTATGATGCCTT
27468535 TATGGTGCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.14, C:0.18, G:0.25, T:0.43
Consensus pattern (23 bp):
TGGCATATTCTATGATGCCTTCG
Found at i:27470153 original size:32 final size:32
Alignment explanation
Indices: 27470117--27470454 Score: 469
Period size: 32 Copynumber: 10.6 Consensus size: 32
27470107 GGTATACACC
27470117 TATTGCCGAATTGAATTGTATATGTATACTTA
1 TATTGCCGAATTGAATTGTATATGTATACTTA
* * ***
27470149 TATTGCCGAATTAAATTGTATAGGTATACACC
1 TATTGCCGAATTGAATTGTATATGTATACTTA
*
27470181 TATTGCCGAATTGAATTGCATATGTATACTTA
1 TATTGCCGAATTGAATTGTATATGTATACTTA
* *
27470213 TATTGGCGAATTGAATTGTGTATGTATACTTA
1 TATTGCCGAATTGAATTGTATATGTATACTTA
* ***
27470245 TATTGCCGAATTGAATTGTATAGGTATACACC
1 TATTGCCGAATTGAATTGTATATGTATACTTA
27470277 TATTGCCGAATTGAATTGTATATGTATACTTA
1 TATTGCCGAATTGAATTGTATATGTATACTTA
* * * ***
27470309 TATTGCTGAATTGAATTGTTTAGGTATACACC
1 TATTGCCGAATTGAATTGTATATGTATACTTA
*
27470341 TATTGCCGAATTGAATTGTGTATGTATACTTA
1 TATTGCCGAATTGAATTGTATATGTATACTTA
* ***
27470373 TATTGCCGAATTGAATTGTATAGGTATACACC
1 TATTGCCGAATTGAATTGTATATGTATACTTA
27470405 TATTGCCGAATTGAATTGTATATGTATACTTA
1 TATTGCCGAATTGAATTGTATATGTATACTTA
27470437 TATTGCCGAATTGAATTG
1 TATTGCCGAATTGAATTG
27470455 CTATTACCGA
Statistics
Matches: 261, Mismatches: 45, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 261 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (32 bp):
TATTGCCGAATTGAATTGTATATGTATACTTA
Found at i:27470684 original size:43 final size:43
Alignment explanation
Indices: 27470619--27470734 Score: 171
Period size: 43 Copynumber: 2.7 Consensus size: 43
27470609 GGCTTCTGAG
* *
27470619 CTGTAAGACAATGTCTGGGACATTGGCATCGAAGTGAGGAAAC
1 CTGTAAGACCATGTTTGGGACATTGGCATCGAAGTGAGGAAAC
* *
27470662 CTGTAAGACCATGTTTGAGACATTGGCATCGAAGTGGGGAAAC
1 CTGTAAGACCATGTTTGGGACATTGGCATCGAAGTGAGGAAAC
* *
27470705 GTGCAAGACCATGTTTGGGA-ATTGGCATCG
1 CTGTAAGACCATGTTTGGGACATTGGCATCG
27470735 TGTATGATTC
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
42 10 0.15
43 56 0.85
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (43 bp):
CTGTAAGACCATGTTTGGGACATTGGCATCGAAGTGAGGAAAC
Found at i:27475200 original size:33 final size:34
Alignment explanation
Indices: 27475163--27475229 Score: 127
Period size: 33 Copynumber: 2.0 Consensus size: 34
27475153 ATAAACTAGT
27475163 ATGATAACCATATTAATAATAAA-ATATTAGTAA
1 ATGATAACCATATTAATAATAAATATATTAGTAA
27475196 ATGATAACCATATTAATAATAAATATATTAGTAA
1 ATGATAACCATATTAATAATAAATATATTAGTAA
27475230 TAAAAACCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 23 0.70
34 10 0.30
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (34 bp):
ATGATAACCATATTAATAATAAATATATTAGTAA
Found at i:27475223 original size:15 final size:14
Alignment explanation
Indices: 27475172--27475234 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 14
27475162 TATGATAACC
27475172 ATATTAATAATAAA
1 ATATTAATAATAAA
*
27475186 ATATTAGTAAATGATAA
1 ATATTAAT-AAT-A-AA
27475203 CCATATTAATAATAAA
1 --ATATTAATAATAAA
*
27475219 TATATTAGTAATAAA
1 -ATATTAATAATAAA
27475234 A
1 A
27475235 ACCGTGATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
14 8 0.20
15 16 0.40
16 3 0.08
17 3 0.08
18 3 0.08
19 7 0.17
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (14 bp):
ATATTAATAATAAA
Found at i:27475246 original size:33 final size:33
Alignment explanation
Indices: 27475168--27475237 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
27475158 CTAGTATGAT
* *
27475168 AACCATATTAATAATAAAATATTAGTAAATGAT
1 AACCATATTAATAATAAAATATTAGTAAATAAA
27475201 AACCATATTAATAATAAATATATTAGT-AATAAA
1 AACCATATTAATAATAAA-ATATTAGTAAATAAA
27475234 AACC
1 AACC
27475238 GTGATAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 26 0.76
34 8 0.24
ACGTcount: A:0.56, C:0.09, G:0.04, T:0.31
Consensus pattern (33 bp):
AACCATATTAATAATAAAATATTAGTAAATAAA
Found at i:27476928 original size:44 final size:44
Alignment explanation
Indices: 27476894--27477017 Score: 212
Period size: 44 Copynumber: 2.8 Consensus size: 44
27476884 AGACAGGATC
*
27476894 TACAATCTTACACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* *
27476938 TGCAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACT
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
*
27476982 TACAATCTTCCCCCTATTCCACTGCTGTTCAGGGAG
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAG
27477018 TTAGTGGTGG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 75 1.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (44 bp):
TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
Found at i:27477158 original size:44 final size:44
Alignment explanation
Indices: 27477096--27477199 Score: 165
Period size: 44 Copynumber: 2.4 Consensus size: 44
27477086 ACTACTGCTT
*
27477096 AGGGAGACAGGA-TCTACAATCTTACACCTATTCCACTGCTGTTC
1 AGGGAGATAGGACT-TACAATCTTACACCTATTCCACTGCTGTTC
* *
27477140 AGGGAGCTAGGACTTACAATCTTCCACCTATTCCACTGCTGTTC
1 AGGGAGATAGGACTTACAATCTTACACCTATTCCACTGCTGTTC
27477184 AGGGAGATAGGACTTA
1 AGGGAGATAGGACTTA
27477200 TAGTTTCACC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 54 0.98
45 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (44 bp):
AGGGAGATAGGACTTACAATCTTACACCTATTCCACTGCTGTTC
Found at i:27478444 original size:19 final size:18
Alignment explanation
Indices: 27478417--27478457 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
27478407 GGCCTCTCTA
**
27478417 TTTTTATTTTTTCCATTT
1 TTTTTATTTTCACCATTT
27478435 TTTTTCATTTTCACCATTT
1 TTTTT-ATTTTCACCATTT
27478454 TTTT
1 TTTT
27478458 GACTCAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTATTTTCACCATTT
Found at i:27478568 original size:62 final size:64
Alignment explanation
Indices: 27478442--27478568 Score: 154
Period size: 62 Copynumber: 2.0 Consensus size: 64
27478432 TTTTTTTTCA
* * * *
27478442 TTTTCACCATTTTTTTGACTCAAAGTGCCTCTTGCAGGTTTTCACCTTGATCTTTCTTCTTTTT
1 TTTTCACCATTTTTTTGACTCAAAGTACCTCTTACAGGTTTTCACCTTGATCCTTCTTCCTTTT
* *
27478506 TTTTC-CC-TTTTTTTGACTCAAAGTAACCT-TTACGGGTTTTCACCTTGGTCCCTTC-TCCTTT
1 TTTTCACCATTTTTTTGACTCAAAGT-ACCTCTTACAGGTTTTCACCTTGAT-CCTTCTTCCTTT
27478567 T
64 T
27478568 T
1 T
27478569 AGGCAAAGTA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
62 41 0.75
63 9 0.16
64 5 0.09
ACGTcount: A:0.13, C:0.25, G:0.11, T:0.50
Consensus pattern (64 bp):
TTTTCACCATTTTTTTGACTCAAAGTACCTCTTACAGGTTTTCACCTTGATCCTTCTTCCTTTT
Found at i:27483607 original size:16 final size:16
Alignment explanation
Indices: 27483586--27483619 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
27483576 TCGACTGTTG
*
27483586 TTTCTTTCTTTTGCTT
1 TTTCTTTCTTTTACTT
27483602 TTTCTTTCTTTTACTT
1 TTTCTTTCTTTTACTT
27483618 TT
1 TT
27483620 CTGTCAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTCTTTCTTTTACTT
Found at i:27483914 original size:16 final size:16
Alignment explanation
Indices: 27483893--27483926 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
27483883 TCGACTGTTG
*
27483893 TTTCTTTCTTTTGCTT
1 TTTCTTTCTTTTACTT
27483909 TTTCTTTCTTTTACTT
1 TTTCTTTCTTTTACTT
27483925 TT
1 TT
27483927 CTGTCAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTCTTTCTTTTACTT
Found at i:27484104 original size:307 final size:307
Alignment explanation
Indices: 27483550--27484164 Score: 1230
Period size: 307 Copynumber: 2.0 Consensus size: 307
27483540 TCATCTTTTA
27483550 TTGGCTCATTGATCAACGATTTAGGCTCGACTGTTGTTTCTTTCTTTTGCTTTTTCTTTCTTTTA
1 TTGGCTCATTGATCAACGATTTAGGCTCGACTGTTGTTTCTTTCTTTTGCTTTTTCTTTCTTTTA
27483615 CTTTTCTGTCAAATATTTTCCTTTCGTTGGTTCTGTTCGGGGGCTTGTCAAATCGTAGTGCCTCC
66 CTTTTCTGTCAAATATTTTCCTTTCGTTGGTTCTGTTCGGGGGCTTGTCAAATCGTAGTGCCTCC
27483680 CACTACGCGTATGAGAACCTATACCCTGATCCCCTTCTGTAGTAGCAGCTGAAGTCTCCTTTCAT
131 CACTACGCGTATGAGAACCTATACCCTGATCCCCTTCTGTAGTAGCAGCTGAAGTCTCCTTTCAT
27483745 GGAATGGTTGTGTTGCATTCATAGTTCCACGAGACATTCTTGCTATCCTTGTAAGAGAAGGTTAC
196 GGAATGGTTGTGTTGCATTCATAGTTCCACGAGACATTCTTGCTATCCTTGTAAGAGAAGGTTAC
27483810 AGGTTTCTGAATGATGATCCTCGGCGTTATACATGCTTTAGCTTCAC
261 AGGTTTCTGAATGATGATCCTCGGCGTTATACATGCTTTAGCTTCAC
27483857 TTGGCTCATTGATCAACGATTTAGGCTCGACTGTTGTTTCTTTCTTTTGCTTTTTCTTTCTTTTA
1 TTGGCTCATTGATCAACGATTTAGGCTCGACTGTTGTTTCTTTCTTTTGCTTTTTCTTTCTTTTA
27483922 CTTTTCTGTCAAATATTTTCCTTTCGTTGGTTCTGTTCGGGGGCTTGTCAAATCGTAGTGCCTCC
66 CTTTTCTGTCAAATATTTTCCTTTCGTTGGTTCTGTTCGGGGGCTTGTCAAATCGTAGTGCCTCC
27483987 CACTACGCGTATGAGAACCTATACCCTGATCCCCTTCTGTAGTAGCAGCTGAAGTCTCCTTTCAT
131 CACTACGCGTATGAGAACCTATACCCTGATCCCCTTCTGTAGTAGCAGCTGAAGTCTCCTTTCAT
27484052 GGAATGGTTGTGTTGCATTCATAGTTCCACGAGACATTCTTGCTATCCTTGTAAGAGAAGGTTAC
196 GGAATGGTTGTGTTGCATTCATAGTTCCACGAGACATTCTTGCTATCCTTGTAAGAGAAGGTTAC
27484117 AGGTTTCTGAATGATGATCCTCGGCGTTATACATGCTTTAGCTTCAC
261 AGGTTTCTGAATGATGATCCTCGGCGTTATACATGCTTTAGCTTCAC
27484164 T
1 T
27484165 ATTCTTAGGT
Statistics
Matches: 308, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
307 308 1.00
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.40
Consensus pattern (307 bp):
TTGGCTCATTGATCAACGATTTAGGCTCGACTGTTGTTTCTTTCTTTTGCTTTTTCTTTCTTTTA
CTTTTCTGTCAAATATTTTCCTTTCGTTGGTTCTGTTCGGGGGCTTGTCAAATCGTAGTGCCTCC
CACTACGCGTATGAGAACCTATACCCTGATCCCCTTCTGTAGTAGCAGCTGAAGTCTCCTTTCAT
GGAATGGTTGTGTTGCATTCATAGTTCCACGAGACATTCTTGCTATCCTTGTAAGAGAAGGTTAC
AGGTTTCTGAATGATGATCCTCGGCGTTATACATGCTTTAGCTTCAC
Found at i:27490282 original size:23 final size:23
Alignment explanation
Indices: 27490252--27490297 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
27490242 TAAAAAGAAT
27490252 TAAAATAATAGTACAT-AATAAAA
1 TAAAATAAT-GTACATAAATAAAA
27490275 TAAAATAATGTACATAAATAAAA
1 TAAAATAATGTACATAAATAAAA
27490298 ATAGGTGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAATGTACATAAATAAAA
Found at i:27491039 original size:13 final size:14
Alignment explanation
Indices: 27491012--27491044 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
27491002 ATAATGAAGA
27491012 AAAAAACAAAGAGC
1 AAAAAACAAAGAGC
*
27491026 AAAAAAGAAA-AGC
1 AAAAAACAAAGAGC
27491039 AAAAAA
1 AAAAAA
27491045 AATGTTCACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.79, C:0.09, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAAACAAAGAGC
Found at i:27491179 original size:16 final size:17
Alignment explanation
Indices: 27491158--27491190 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
27491148 TCTTTTATAG
*
27491158 CCAAAATAAAA-AAAAT
1 CCAAAACAAAATAAAAT
27491174 CCAAAACAAAATAAAAT
1 CCAAAACAAAATAAAAT
27491191 AAATACAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.73, C:0.15, G:0.00, T:0.12
Consensus pattern (17 bp):
CCAAAACAAAATAAAAT
Found at i:27498091 original size:211 final size:214
Alignment explanation
Indices: 27497722--27498148 Score: 797
Period size: 211 Copynumber: 2.0 Consensus size: 214
27497712 TAATATTAAG
*
27497722 ATTCTAACATTTTTAAATATTGTTAGTTACAACTTGGATGAAAATATTAAATGTTGAAATTTTTT
1 ATTCTAACATTTTTAAATATTGTTA--TACAAATTGGATGAAAATATTAAATGTTGAAATTTTTT
27497787 TATATAATACTTAGAATTATTCATAATTTTTTTTCAACTTTAGACAGGAGGATAAATGTAAATGT
64 TATATAATACTTAGAATTATTCATAATTTTTTTTCAACTTTAGACAGGAGGATAAATGTAAATGT
27497852 TAATAAAAATGTAACCACCATCGCTCCATCTTCTTTTCATTATGGACTCCTTTTTGGAAAAATTA
129 TAATAAAAATGTAACCACCATCGCTCCATCTTCTTTTCATTATGGACTCCTTTTTGGAAAAATTA
27497917 CATTTATGTCTTATGTTCGTT
194 CATTTATGTCTTATGTTCGTT
27497938 ATTCTAACATTTTTAAATATTGTTA-A-AAATTGGATGAAAATATTAAATGTTGAAA-TTTTTTA
1 ATTCTAACATTTTTAAATATTGTTATACAAATTGGATGAAAATATTAAATGTTGAAATTTTTTTA
27498000 TATAATACTTAGAATTATTCATAATTTTTTTTCAACTTTAGACAGGAGGATAAATGTAAATGTTA
66 TATAATACTTAGAATTATTCATAATTTTTTTTCAACTTTAGACAGGAGGATAAATGTAAATGTTA
27498065 ATAAAAATGTAACCACCATCGCTCCATCTTCTTTTCATTATGGACTCCTTTTTGGAAAAATTACA
131 ATAAAAATGTAACCACCATCGCTCCATCTTCTTTTCATTATGGACTCCTTTTTGGAAAAATTACA
*
27498130 TTTATGTCTTGTGTTCGTT
196 TTTATGTCTTATGTTCGTT
27498149 TCCGGCTCAC
Statistics
Matches: 209, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
211 155 0.74
212 28 0.13
213 1 0.00
216 25 0.12
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (214 bp):
ATTCTAACATTTTTAAATATTGTTATACAAATTGGATGAAAATATTAAATGTTGAAATTTTTTTA
TATAATACTTAGAATTATTCATAATTTTTTTTCAACTTTAGACAGGAGGATAAATGTAAATGTTA
ATAAAAATGTAACCACCATCGCTCCATCTTCTTTTCATTATGGACTCCTTTTTGGAAAAATTACA
TTTATGTCTTATGTTCGTT
Found at i:27499961 original size:25 final size:25
Alignment explanation
Indices: 27499933--27499989 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
27499923 ATCCCCAACA
* *
27499933 AAATTTTGACTATTTTACCCCTGGT
1 AAATTTTGACAATTTTACCCCTAGT
* *
27499958 AAATTTTGACAATTTTGCCCCTATT
1 AAATTTTGACAATTTTACCCCTAGT
27499983 AAATTTT
1 AAATTTT
27499990 CGAGAAACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.09, T:0.46
Consensus pattern (25 bp):
AAATTTTGACAATTTTACCCCTAGT
Found at i:27507587 original size:12 final size:12
Alignment explanation
Indices: 27507570--27507602 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
27507560 CGGCCCGCCC
27507570 ATATTAATTTTT
1 ATATTAATTTTT
27507582 ATATT-ATTTTT
1 ATATTAATTTTT
27507593 ATA-TAATTTT
1 ATATTAATTTT
27507603 CAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:27507845 original size:22 final size:22
Alignment explanation
Indices: 27507820--27507862 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27507810 TATCCAAACA
*
27507820 ATAATAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* *
27507842 ATAACAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
27507863 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:27511360 original size:11 final size:11
Alignment explanation
Indices: 27511346--27511375 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
27511336 AAATGCCTCT
27511346 AAAATAATAAC
1 AAAATAATAAC
27511357 AAAATTAATAAC
1 AAAA-TAATAAC
27511369 AAAATAA
1 AAAATAA
27511376 GTTTTATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (11 bp):
AAAATAATAAC
Found at i:27511422 original size:22 final size:22
Alignment explanation
Indices: 27511397--27511439 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27511387 TATCCAAACA
27511397 ATAACAATAAAATAGTAGCAAT
1 ATAACAATAAAATAGTAGCAAT
* * *
27511419 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
27511440 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAT
Found at i:27516364 original size:45 final size:45
Alignment explanation
Indices: 27516300--27516393 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
27516290 AACAGATACT
* *
27516300 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
27516345 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
27516390 CGGT
1 CGGT
27516394 TCGCATGNNN
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:27519961 original size:20 final size:21
Alignment explanation
Indices: 27519936--27519977 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
27519926 AATAAAAAGA
27519936 TGGAAACGAGCTC-ATTGAGC
1 TGGAAACGAGCTCAATTGAGC
27519956 TGGAAACGAGCTCAATTGAGC
1 TGGAAACGAGCTCAATTGAGC
27519977 T
1 T
27519978 CAACAAGCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (21 bp):
TGGAAACGAGCTCAATTGAGC
Found at i:27521011 original size:23 final size:23
Alignment explanation
Indices: 27520985--27521028 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
27520975 AAAGCCATTA
27520985 TGGCATATTCTATGATGCCTTCG
1 TGGCATATTCTATGATGCCTTCG
* * *
27521008 TGGCGTATTTTGTGATGCCTT
1 TGGCATATTCTATGATGCCTT
27521029 TATGGTGCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.14, C:0.18, G:0.25, T:0.43
Consensus pattern (23 bp):
TGGCATATTCTATGATGCCTTCG
Found at i:27522578 original size:32 final size:32
Alignment explanation
Indices: 27522534--27522914 Score: 440
Period size: 32 Copynumber: 11.9 Consensus size: 32
27522524 ATATGTTTTA
*
27522534 TATATTGTCGAATTGAATTGTATATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* * *
27522566 TATATTGCCGAATTAAATTGTATAGGTATACA
1 TATATTGCCGAATTGAATTGTATATGTATACT
** *
27522598 CCTATTGCCGAATTGAATTGCATATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* *
27522630 TATATTGGCGAATTGAATTGTGTATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* *
27522662 TATATTG-CGAAATTGAATTGTATAGGTATACA
1 TATATTGCCG-AATTGAATTGTATATGTATACT
**
27522694 CCTATTGCCGAATTGAATTGTATATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
** * *
27522726 TATATTGTTGAATTGAATTGTATAGGTATACA
1 TATATTGCCGAATTGAATTGTATATGTATACT
** * *
27522758 CCTATTGTCGAATTGAATTGTGTATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* *
27522790 TATATTGCCGAATTGAATTGTATAGGTATACA
1 TATATTGCCGAATTGAATTGTATATGTATACT
** *
27522822 CCTATTGCCGAATTGAATTGTGTATGTATACT
1 TATATTGCCGAATTGAATTGTATATGTATACT
* * *
27522854 TATATTGCCGAATTGAATTGCATAGGTATACA
1 TATATTGCCGAATTGAATTGTATATGTATACT
** * * *
27522886 CCTATTACCTAATTGATTTGTATATGTAT
1 TATATTGCCGAATTGAATTGTATATGTAT
27522915 TTATATATTG
Statistics
Matches: 289, Mismatches: 58, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
31 2 0.01
32 285 0.99
33 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (32 bp):
TATATTGCCGAATTGAATTGTATATGTATACT
Found at i:27522642 original size:96 final size:96
Alignment explanation
Indices: 27522534--27522914 Score: 521
Period size: 96 Copynumber: 4.0 Consensus size: 96
27522524 ATATGTTTTA
*
27522534 TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTAAATTGTATAGGTATACAC
1 TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTGAATTGTATAGGTATACAC
*
27522599 CTATTGCCGAATTGAATTGCATATGTATACT
66 CTATTGCCGAATTGAATTGTATATGTATACT
* *
27522630 TATATTGGCGAATTGAATTGTGTATGTATACTTATATTG-CGAAATTGAATTGTATAGGTATACA
1 TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCG-AATTGAATTGTATAGGTATACA
27522694 CCTATTGCCGAATTGAATTGTATATGTATACT
65 CCTATTGCCGAATTGAATTGTATATGTATACT
* * *** * * * **
27522726 TATATTGTTGAATTGAATTGTATAGGTATACACCTATTGTCGAATTGAATTGTGTATGTATACTT
1 TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTGAATTGTATAGGTATACAC
* * *
27522791 ATATTGCCGAATTGAATTGTATAGGTATACA
66 CTATTGCCGAATTGAATTGTATATGTATACT
** * * *
27522822 CCTATTGCCGAATTGAATTGTGTATGTATACTTATATTGCCGAATTGAATTGCATAGGTATACAC
1 TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTGAATTGTATAGGTATACAC
* * *
27522887 CTATTACCTAATTGATTTGTATATGTAT
66 CTATTGCCGAATTGAATTGTATATGTAT
27522915 TTATATATTG
Statistics
Matches: 245, Mismatches: 38, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
95 2 0.01
96 241 0.98
97 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (96 bp):
TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTGAATTGTATAGGTATACAC
CTATTGCCGAATTGAATTGTATATGTATACT
Found at i:27522925 original size:64 final size:64
Alignment explanation
Indices: 27522534--27522914 Score: 512
Period size: 64 Copynumber: 6.0 Consensus size: 64
27522524 ATATGTTTTA
* * *** * * *
27522534 TATATTGTCGAATTGAATTGTATATGTATACTTATATTGCCGAATTAAATTGTATAGGTATACA
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
** * * *** * *
27522598 CCTATTGCCGAATTGAATTGCATATGTATACTTATATTGGCGAATTGAATTGTGTATGTATACT
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
27522662 TATATTG-CGAAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
1 TATATTGCCG-AATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
** * *
27522726 TATATTGTTGAATTGAATTGTATAGGTATACACCTATTGTCGAATTGAATTGTGTATGTATACT
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
*
27522790 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTGTATGTATACT
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
* * * *
27522854 TATATTGCCGAATTGAATTGCATAGGTATACACCTATTACCTAATTGATTTGTATATGTAT
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTAT
27522915 TTATATATTG
Statistics
Matches: 286, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
63 2 0.01
64 283 0.99
65 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (64 bp):
TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
Found at i:27523116 original size:43 final size:43
Alignment explanation
Indices: 27523052--27523166 Score: 176
Period size: 43 Copynumber: 2.7 Consensus size: 43
27523042 GCTTCTGAGC
* *
27523052 TGTAAGACAATGTCTGGGACATTGGCATCAAAGTGAGGAAACG
1 TGTAAGACCATGTTTGGGACATTGGCATCAAAGTGAGGAAACG
* * *
27523095 TGTAAGACCATGTTTGAGACATTGGCATCGAAGTGAGGAAATG
1 TGTAAGACCATGTTTGGGACATTGGCATCAAAGTGAGGAAACG
*
27523138 TGCAAGACCATGTTTGGGACATTGGCATC
1 TGTAAGACCATGTTTGGGACATTGGCATC
27523167 GTGTATGATT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATTGGCATCAAAGTGAGGAAACG
Found at i:27527178 original size:85 final size:85
Alignment explanation
Indices: 27527035--27527200 Score: 332
Period size: 85 Copynumber: 2.0 Consensus size: 85
27527025 GAAGGGTTAG
27527035 CACCCTCGTAACGCCCAAAATTGGTACCGAATCGATTGTTTAATGTCTTAATATCGGAAATTTGA
1 CACCCTCGTAACGCCCAAAATTGGTACCGAATCGATTGTTTAATGTCTTAATATCGGAAATTTGA
27527100 AAAGATTTTAAAATACGACT
66 AAAGATTTTAAAATACGACT
27527120 CACCCTCGTAACGCCCAAAATTGGTACCGAATCGATTGTTTAATGTCTTAATATCGGAAATTTGA
1 CACCCTCGTAACGCCCAAAATTGGTACCGAATCGATTGTTTAATGTCTTAATATCGGAAATTTGA
27527185 AAAGATTTTAAAATAC
66 AAAGATTTTAAAATAC
27527201 AACCGTTTAA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 81 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.31
Consensus pattern (85 bp):
CACCCTCGTAACGCCCAAAATTGGTACCGAATCGATTGTTTAATGTCTTAATATCGGAAATTTGA
AAAGATTTTAAAATACGACT
Found at i:27527802 original size:10 final size:11
Alignment explanation
Indices: 27527772--27527805 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
27527762 TACACCAATG
27527772 AATAACAAACA
1 AATAACAAACA
*
27527783 ATTAACAAACA
1 AATAACAAACA
27527794 AAT-ACAAACA
1 AATAACAAACA
27527804 AA
1 AA
27527806 CATAACAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.71, C:0.18, G:0.00, T:0.12
Consensus pattern (11 bp):
AATAACAAACA
Found at i:27528180 original size:23 final size:23
Alignment explanation
Indices: 27528150--27528195 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
27528140 TAAAAAGAAT
27528150 TAAAATAATAGTACAT-AATAAAA
1 TAAAATAAT-GTACATAAATAAAA
*
27528173 TAAAATAATGTATATAAATAAAA
1 TAAAATAATGTACATAAATAAAA
27528196 ATAGGTGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.28
Consensus pattern (23 bp):
TAAAATAATGTACATAAATAAAA
Found at i:27529961 original size:44 final size:44
Alignment explanation
Indices: 27529927--27530182 Score: 395
Period size: 44 Copynumber: 5.8 Consensus size: 44
27529917 AGACAGGATC
*
27529927 TACAATCTTACACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* *
27529971 TGCAATCTTCCACCTATTCCATTGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* *
27530015 TGCAATCTTCCACCTATTCCACTGCTGTTCAGGGAGATAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * * *
27530059 TACAATTTTCCACCTATTCCAATGTTGTTCAGGTAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
27530103 TGCAATCTTCCACCTATTCTACTGCTGTTCAGGGAGCTAGGACT
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
*
27530147 TACAATCTTCCACCTATTCAACTGCTGTTCAGGGAG
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAG
27530183 ATAAGATTTA
Statistics
Matches: 192, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 192 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (44 bp):
TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
Found at i:27530129 original size:132 final size:132
Alignment explanation
Indices: 27529900--27530185 Score: 432
Period size: 132 Copynumber: 2.2 Consensus size: 132
27529890 TTCGATCTGC
* * *
27529900 TCCACTACTGCTT-AGGGAGACAGGATCTACAATCTTACACCTATTCCACTGCTGTTCAGGGAGC
1 TCCACTGCTG-TTCAGGGAGATAGGATCTACAATCTTACACCTATTCCAATGCTGTTCAGGGAGC
* *
27529964 TAGGACATGCAATCTTCCACCTATTCCATTGCTGTTCAGGGAGCTAGGACATGCAATCTTCCACC
65 TAGGACATGCAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACATACAATCTTCCACC
27530029 TAT
130 TAT
* * * *
27530032 TCCACTGCTGTTCAGGGAGATAGGA-CATACAATTTTCCACCTATTCCAATGTTGTTCAGGTAGC
1 TCCACTGCTGTTCAGGGAGATAGGATC-TACAATCTTACACCTATTCCAATGCTGTTCAGGGAGC
* *
27530096 TAGGACATGCAATCTTCCACCTATTCTACTGCTGTTCAGGGAGCTAGGACTTACAATCTTCCACC
65 TAGGACATGCAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACATACAATCTTCCACC
27530161 TAT
130 TAT
*
27530164 TCAACTGCTGTTCAGGGAGATA
1 TCCACTGCTGTTCAGGGAGATA
27530186 AGATTTATAG
Statistics
Matches: 140, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
131 3 0.02
132 137 0.98
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (132 bp):
TCCACTGCTGTTCAGGGAGATAGGATCTACAATCTTACACCTATTCCAATGCTGTTCAGGGAGCT
AGGACATGCAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACATACAATCTTCCACCT
AT
Found at i:27542746 original size:23 final size:23
Alignment explanation
Indices: 27542716--27542761 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
27542706 TAAAAAGAAT
27542716 TAAAATAATAGTACAT-AATAAAA
1 TAAAATAAT-GTACATAAATAAAA
27542739 TAAAATAATGTACATAAATAAAA
1 TAAAATAATGTACATAAATAAAA
27542762 ATAGGTGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAATGTACATAAATAAAA
Done.