Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 96 of 136
Found at i:32173320 original size:10 final size:11
Alignment explanation
Indices: 32173263--32173321 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
32173253 TTGACTTTGA
32173263 TTTTTTTGATT
1 TTTTTTTGATT
*
32173274 TTTTGATTGATTT
1 TTTT-TTTGA-TT
32173287 TTTTATTTGA-T
1 TTTT-TTTGATT
**
32173298 TTGATTTGATT
1 TTTTTTTGATT
32173309 TTTTTTTG-TT
1 TTTTTTTGATT
32173319 TTT
1 TTT
32173322 CGTTTTTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
10 10 0.26
11 14 0.37
12 4 0.11
13 10 0.26
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (11 bp):
TTTTTTTGATT
Found at i:32173678 original size:12 final size:12
Alignment explanation
Indices: 32173661--32173685 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32173651 CTGACATCAA
32173661 GCTGCTGTGCAG
1 GCTGCTGTGCAG
32173673 GCTGCTGTGCAG
1 GCTGCTGTGCAG
32173685 G
1 G
32173686 TTCTATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.44, T:0.24
Consensus pattern (12 bp):
GCTGCTGTGCAG
Found at i:32178115 original size:12 final size:12
Alignment explanation
Indices: 32178098--32178136 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
32178088 ATAATGGATA
*
32178098 AATAAATAAGTG
1 AATAAATAAATG
32178110 AATAAATAAATG
1 AATAAATAAATG
*
32178122 AATCAAACAAATG
1 AAT-AAATAAATG
32178135 AA
1 AA
32178137 ACTATAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.64, C:0.05, G:0.10, T:0.21
Consensus pattern (12 bp):
AATAAATAAATG
Found at i:32180236 original size:12 final size:12
Alignment explanation
Indices: 32180219--32180243 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32180209 CAAAGACTAT
32180219 TAACAATATTTA
1 TAACAATATTTA
32180231 TAACAATATTTA
1 TAACAATATTTA
32180243 T
1 T
32180244 GTTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:32180634 original size:13 final size:11
Alignment explanation
Indices: 32180607--32180662 Score: 64
Period size: 11 Copynumber: 5.3 Consensus size: 11
32180597 TTTTTTAAAC
32180607 TTTAAAATATT
1 TTTAAAATATT
32180618 TTTAAAATATT
1 TTTAAAATATT
* *
32180629 TTT---TTAAT
1 TTTAAAATATT
32180637 TTTAAAATATT
1 TTTAAAATATT
32180648 TTTAAAATACTT
1 TTTAAAATA-TT
32180660 TTT
1 TTT
32180663 TTAATTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
8 6 0.16
11 26 0.70
12 5 0.14
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTAAAATATT
Found at i:32180667 original size:31 final size:30
Alignment explanation
Indices: 32180595--32180693 Score: 128
Period size: 30 Copynumber: 3.3 Consensus size: 30
32180585 TAAATATATT
* *
32180595 TATTTTTTAAACTTTAAAATATTTTTAAAA
1 TATTTTTTTAATTTTAAAATATTTTTAAAA
32180625 TATTTTTTTAATTTTAAAATATTTTTAAAA
1 TATTTTTTTAATTTTAAAATATTTTTAAAA
***
32180655 TACTTTTTTTAATTTTTTTA-ATTTTTAAAA
1 TA-TTTTTTTAATTTTAAAATATTTTTAAAA
*
32180685 TAATTTTTT
1 TATTTTTTT
32180694 GGCATTTTAT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
29 6 0.10
30 42 0.68
31 14 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (30 bp):
TATTTTTTTAATTTTAAAATATTTTTAAAA
Found at i:32180822 original size:29 final size:30
Alignment explanation
Indices: 32180788--32180845 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
32180778 TCATATTCCA
32180788 GGCCGGGCT-AAATTTTTTATGGACCCGAG
1 GGCCGGGCTAAAATTTTTTATGGACCCGAG
*
32180817 GGCCGGGCTAAAATTTTTTATGGGCCCGA
1 GGCCGGGCTAAAATTTTTTATGGACCCGA
32180846 CCCGAACCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (30 bp):
GGCCGGGCTAAAATTTTTTATGGACCCGAG
Found at i:32182900 original size:20 final size:20
Alignment explanation
Indices: 32182873--32182919 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
32182863 GTGTTCATCG
32182873 TTTATTTCTGTTCATTTT-T
1 TTTATTTCTGTTCATTTTCT
* *
32182892 TTATATTTCTTTTTATTTTCT
1 TT-TATTTCTGTTCATTTTCT
32182913 TTTATTT
1 TTTATTT
32182920 TCATTTTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTATTTCTGTTCATTTTCT
Found at i:32182911 original size:11 final size:11
Alignment explanation
Indices: 32182889--32182926 Score: 51
Period size: 10 Copynumber: 3.4 Consensus size: 11
32182879 TCTGTTCATT
32182889 TTTTTATATTTC
1 TTTTTAT-TTTC
32182901 TTTTTATTTTC
1 TTTTTATTTTC
32182912 -TTTTATTTTC
1 TTTTTATTTTC
32182922 ATTTT
1 -TTTT
32182927 GTTTCACCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 10 0.42
11 4 0.17
12 10 0.42
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTATTTTC
Found at i:32183841 original size:21 final size:21
Alignment explanation
Indices: 32183781--32183845 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
32183771 TGTACACACA
*
32183781 TTTATA-TATATATTTACA-T
1 TTTATATTATATATATACATT
* *
32183800 TTTATAATTCA-AAATACACATT
1 TTTAT-ATT-ATATATATACATT
32183822 TTTATATTATATATATACATT
1 TTTATATTATATATATACATT
32183843 TTT
1 TTT
32183846 TGATATTGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
19 5 0.14
20 2 0.06
21 22 0.61
22 7 0.19
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTATATTATATATATACATT
Found at i:32187131 original size:3 final size:3
Alignment explanation
Indices: 32187123--32187175 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
32187113 NNNNNNNNNN
32187123 TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32187170 TAA TAA
1 TAA TAA
32187176 AAGGGATAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:32188219 original size:18 final size:18
Alignment explanation
Indices: 32188198--32188235 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
32188188 AACCTATTAT
32188198 GTATGCAAAACCCCATAA
1 GTATGCAAAACCCCATAA
*
32188216 GTATGCCAAACCCCATAA
1 GTATGCAAAACCCCATAA
32188234 GT
1 GT
32188236 TTGGGTTGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.29, G:0.13, T:0.18
Consensus pattern (18 bp):
GTATGCAAAACCCCATAA
Found at i:32190995 original size:13 final size:15
Alignment explanation
Indices: 32190973--32191004 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
32190963 TTCTATTTTC
32190973 TTTTCTCTC-AATTT
1 TTTTCTCTCAAATTT
32190987 TTTTC-CTCAAATTT
1 TTTTCTCTCAAATTT
32191001 TTTT
1 TTTT
32191005 TTTCATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 3 0.18
14 14 0.82
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTCTCTCAAATTT
Found at i:32202184 original size:18 final size:19
Alignment explanation
Indices: 32202163--32202198 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32202153 TTAAATAGTA
32202163 TTAAAA-ATAATTTTATAT
1 TTAAAAGATAATTTTATAT
*
32202181 TTAAAAGATATTTTTATA
1 TTAAAAGATAATTTTATA
32202199 AGAATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TTAAAAGATAATTTTATAT
Found at i:32203717 original size:27 final size:28
Alignment explanation
Indices: 32203682--32203743 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
32203672 AAAATCAAAC
*
32203682 TTAACAACCTAGG-TTTTGAAATCTGTTT
1 TTAA-AACCTAGGTTTTTGAAACCTGTTT
*
32203710 TTAAAACCTTGGTTTTTGAAACCTGTTT
1 TTAAAACCTAGGTTTTTGAAACCTGTTT
32203738 TTAAAA
1 TTAAAA
32203744 ATCAACCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 7 0.23
28 24 0.77
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (28 bp):
TTAAAACCTAGGTTTTTGAAACCTGTTT
Found at i:32203726 original size:15 final size:13
Alignment explanation
Indices: 32203704--32203743 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 13
32203694 GTTTTGAAAT
32203704 CTGTTTTTAAAAC
1 CTGTTTTTAAAAC
*
32203717 CTTGGTTTTTGAAAC
1 C-T-GTTTTTAAAAC
32203732 CTGTTTTTAAAA
1 CTGTTTTTAAAA
32203744 ATCAACCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 10 0.43
14 2 0.09
15 11 0.48
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (13 bp):
CTGTTTTTAAAAC
Found at i:32205557 original size:21 final size:21
Alignment explanation
Indices: 32205531--32205574 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
32205521 CTTCAGCAAA
32205531 AACCCAGAAAAAAGATTTTTT
1 AACCCAGAAAAAAGATTTTTT
*
32205552 AACCCAGAATAAAGATTTTTT
1 AACCCAGAAAAAAGATTTTTT
32205573 AA
1 AA
32205575 TCTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.30
Consensus pattern (21 bp):
AACCCAGAAAAAAGATTTTTT
Found at i:32209654 original size:28 final size:27
Alignment explanation
Indices: 32209601--32209660 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
32209591 ACATCTATAC
*
32209601 ATTTTCATAATACATATATGTACATAT
1 ATTTTCATAATACATATATATACATAT
*
32209628 ATTTT-ATAATATATATATATACACATAT
1 ATTTTCATAATACATATATAT--ACATAT
32209656 ATTTT
1 ATTTT
32209661 TTGTTATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 13 0.45
27 5 0.17
28 11 0.38
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (27 bp):
ATTTTCATAATACATATATATACATAT
Found at i:32210566 original size:16 final size:16
Alignment explanation
Indices: 32210545--32210578 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32210535 ACCAAGACAT
32210545 TAAGTAATCAACTAGG
1 TAAGTAATCAACTAGG
32210561 TAAGTAATCAACTAGG
1 TAAGTAATCAACTAGG
32210577 TA
1 TA
32210579 CCAATTTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.26
Consensus pattern (16 bp):
TAAGTAATCAACTAGG
Found at i:32216211 original size:136 final size:137
Alignment explanation
Indices: 32216056--32216329 Score: 541
Period size: 136 Copynumber: 2.0 Consensus size: 137
32216046 AAAATCATTT
32216056 TTTTATAAAAATAACTATTTTCATAACTAGTTAGCTTAATTTTAGTTAAAAGTTATTTAATAAAA
1 TTTTATAAAAATAACTATTTTCATAACTAGTTAGCTTAATTTTAGTTAAAAGTTATTTAATAAAA
32216121 AAATTAATAAACAAAAGGTAAAAATATCTTTTCATTTAAAATTTATTTAATAAATAAACACAAAT
66 AAATTAATAAACAAAAGGTAAAAATATCTTTTCATTTAAAATTTATTTAATAAATAAACACAAAT
32216186 GAATTAA
131 GAATTAA
32216193 TTTTATAAAAA-AACTATTTTCATAACTAGTTAGCTTAATTTTAGTTAAAAGTTATTTAATAAAA
1 TTTTATAAAAATAACTATTTTCATAACTAGTTAGCTTAATTTTAGTTAAAAGTTATTTAATAAAA
32216257 AAATTAATAAACAAAAGGTAAAAATATCTTTTCATTTAAAATTTATTTAATAAATAAACACAAAT
66 AAATTAATAAACAAAAGGTAAAAATATCTTTTCATTTAAAATTTATTTAATAAATAAACACAAAT
32216322 GAATTAA
131 GAATTAA
32216329 T
1 T
32216330 GTATTTTTCA
Statistics
Matches: 137, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
136 126 0.92
137 11 0.08
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (137 bp):
TTTTATAAAAATAACTATTTTCATAACTAGTTAGCTTAATTTTAGTTAAAAGTTATTTAATAAAA
AAATTAATAAACAAAAGGTAAAAATATCTTTTCATTTAAAATTTATTTAATAAATAAACACAAAT
GAATTAA
Found at i:32217909 original size:24 final size:24
Alignment explanation
Indices: 32217868--32217936 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
32217858 AAATGAAAAA
*
32217868 AATAATAATATAGT-ATAACTTTTA-
1 AATAATAATACA-TAATAA-TTTTAG
*
32217892 AGTAATAATACATAATAATTTTAG
1 AATAATAATACATAATAATTTTAG
* *
32217916 AATAATAATACACAATGATTT
1 AATAATAATACATAATAATTT
32217937 CGAAAACATG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
23 6 0.16
24 32 0.84
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.38
Consensus pattern (24 bp):
AATAATAATACATAATAATTTTAG
Found at i:32218059 original size:9 final size:9
Alignment explanation
Indices: 32218021--32218062 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
32218011 AACTTAAAAT
32218021 ATAGTACATA
1 ATAGTA-ATA
32218031 A-A-TAATA
1 ATAGTAATA
*
32218038 ATAATAATA
1 ATAGTAATA
32218047 ATAGTAATA
1 ATAGTAATA
32218056 ATAGTAA
1 ATAGTAA
32218063 AAGGTTTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
7 4 0.14
8 3 0.10
9 21 0.72
10 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (9 bp):
ATAGTAATA
Found at i:32224745 original size:17 final size:17
Alignment explanation
Indices: 32224723--32224763 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
32224713 TATTGTACTT
*
32224723 TTTTTTCTT-CACTTTGA
1 TTTTTTCTTCCAC-TAGA
32224740 TTTTTT-TTCCACTAGA
1 TTTTTTCTTCCACTAGA
32224756 TTTTTTCT
1 TTTTTTCT
32224764 AGTAAGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.12, C:0.17, G:0.05, T:0.66
Consensus pattern (17 bp):
TTTTTTCTTCCACTAGA
Found at i:32232268 original size:34 final size:34
Alignment explanation
Indices: 32232225--32232294 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
32232215 ACGATAAGTC
32232225 TGGCAATACCTCAATTGACTCAACTAATATAACA
1 TGGCAATACCTCAATTGACTCAACTAATATAACA
32232259 TGGCAATACCTCAATTGACTCAACTAATATAACA
1 TGGCAATACCTCAATTGACTCAACTAATATAACA
32232293 TG
1 TG
32232295 AAACATGTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (34 bp):
TGGCAATACCTCAATTGACTCAACTAATATAACA
Found at i:32235743 original size:20 final size:20
Alignment explanation
Indices: 32235718--32235756 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32235708 AATTTTTTTT
32235718 TTTAAAAATACATAAAAATA
1 TTTAAAAATACATAAAAATA
* *
32235738 TTTAAAAGTTCATAAAAAT
1 TTTAAAAATACATAAAAAT
32235757 CTTAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (20 bp):
TTTAAAAATACATAAAAATA
Found at i:32235764 original size:20 final size:19
Alignment explanation
Indices: 32235719--32235764 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
32235709 ATTTTTTTTT
32235719 TTAAAAATACATAAAAATA
1 TTAAAAATACATAAAAATA
* * *
32235738 TTTAAAAGTTCATAAAAATC
1 -TTAAAAATACATAAAAATA
32235758 TTAAAAA
1 TTAAAAA
32235765 AAATATCTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (19 bp):
TTAAAAATACATAAAAATA
Found at i:32238235 original size:26 final size:26
Alignment explanation
Indices: 32238183--32238233 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
32238173 CACTAATCCA
* *
32238183 TATTTAATATATTTATTAATTCAAAT
1 TATTTAAAATATTTATCAATTCAAAT
*
32238209 TATTTAAAATATTTCTCACATTCAA
1 TATTTAAAATATTTATCA-ATTCAA
32238234 TTTAATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (26 bp):
TATTTAAAATATTTATCAATTCAAAT
Found at i:32249134 original size:16 final size:17
Alignment explanation
Indices: 32249113--32249145 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32249103 ATTTTCTTTA
32249113 TTATTAAATT-AGTATT
1 TTATTAAATTAAGTATT
*
32249129 TTATTAATTTAAGTATT
1 TTATTAAATTAAGTATT
32249146 GAATATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (17 bp):
TTATTAAATTAAGTATT
Found at i:32259834 original size:14 final size:13
Alignment explanation
Indices: 32259815--32259860 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
32259805 TTTCTTGTTC
32259815 TTATTTTGTTTTAT
1 TTATTTT-TTTTAT
32259829 TTATTTATTTTTAT
1 TTATTT-TTTTTAT
*
32259843 TTATTTTATTT-T
1 TTATTTTTTTTAT
32259855 TTATTT
1 TTATTT
32259861 CGAAATAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 7 0.23
13 4 0.13
14 18 0.60
15 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (13 bp):
TTATTTTTTTTAT
Found at i:32260674 original size:3 final size:3
Alignment explanation
Indices: 32260666--32260711 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
32260656 TTTAACCTTG
32260666 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
32260712 TACTCATTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32260800 original size:23 final size:23
Alignment explanation
Indices: 32260774--32260818 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32260764 ATTCTTGTAT
*
32260774 TTTTATAAT-TTTGTTCACGTTTC
1 TTTTA-AATATTTATTCACGTTTC
*
32260797 TTTTAATTATTTATTCACGTTT
1 TTTTAAATATTTATTCACGTTT
32260819 TCATCATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.20, C:0.11, G:0.07, T:0.62
Consensus pattern (23 bp):
TTTTAAATATTTATTCACGTTTC
Found at i:32266916 original size:24 final size:23
Alignment explanation
Indices: 32266884--32266929 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
32266874 ATATGATTTT
*
32266884 TTTTATTTTATATGTTCAATTAC
1 TTTTATTTTATATATTCAATTAC
*
32266907 TTTTAGTTTTATATATTTAATTA
1 TTTTA-TTTTATATATTCAATTA
32266930 AAGATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTTTATATATTCAATTAC
Found at i:32287405 original size:89 final size:87
Alignment explanation
Indices: 32287199--32287411 Score: 214
Period size: 89 Copynumber: 2.4 Consensus size: 87
32287189 CATGTGAATA
** * * *
32287199 GTGAACATTGAAATTGAGGGAAACCATGTTTGTGGGGAAGTAATTCAGTGGTGGAAACCATAAAA
1 GTGAACATTGAAA-TGAGGGAAACCATGTTTGTGGGGAAGTAACACACTGGTAGAAACAATAAAA
* *
32287264 GGCGATTCAGGAACATGTCAATG
65 GGCAATTCAGGAACATATCAATG
* * * * ** *
32287287 GTTAACATTGAAATCAAAGAAAATTATGTTTATGGGGAAGTAACACAACT-GTAGAAACAATAGA
1 GTGAACATTGAAAT-GAGGGAAACCATGTTTGTGGGGAAGTAACAC-ACTGGTAGAAACAATA-A
*
32287351 AAGGCAATTCAGGAGCATATCAATG
63 AAGGCAATTCAGGAACATATCAATG
*
32287376 GTGAACATTAAAACTGAGGGGAAA-CATGTTTGTGGG
1 GTGAACATTGAAA-TGA-GGGAAACCATGTTTGTGGG
32287412 TTAACTCAGT
Statistics
Matches: 98, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
87 1 0.01
88 45 0.46
89 47 0.48
90 5 0.05
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (87 bp):
GTGAACATTGAAATGAGGGAAACCATGTTTGTGGGGAAGTAACACACTGGTAGAAACAATAAAAG
GCAATTCAGGAACATATCAATG
Found at i:32288291 original size:7 final size:7
Alignment explanation
Indices: 32288281--32288320 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
32288271 GTTTTTGAGT
32288281 TTTAAGG
1 TTTAAGG
*
32288288 TTTAGGG
1 TTTAAGG
*
32288295 TTTAGGG
1 TTTAAGG
32288302 TTTAAGG
1 TTTAAGG
32288309 TTTTAAGG
1 -TTTAAGG
32288317 TTTA
1 TTTA
32288321 GAGTTTGGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 23 0.77
8 7 0.23
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:32288303 original size:14 final size:14
Alignment explanation
Indices: 32288281--32288326 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
32288271 GTTTTTGAGT
32288281 TTTAAGGTTTAGGG
1 TTTAAGGTTTAGGG
* *
32288295 TTTAGGGTTTAAGGT
1 TTTAAGGTTT-AGGG
*
32288310 TTTAAGGTTTAGAG
1 TTTAAGGTTTAGGG
32288324 TTT
1 TTT
32288327 GGGGTATAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:32288339 original size:29 final size:29
Alignment explanation
Indices: 32288279--32288339 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
32288269 CTGTTTTTGA
* *
32288279 GTTTTAAGGTTTAGGGTTTAGGGTTTAAG
1 GTTTTAAGGTTTAGAGTTTAGGGTATAAG
* *
32288308 GTTTTAAGGTTTAGAGTTTGGGGTATAGG
1 GTTTTAAGGTTTAGAGTTTAGGGTATAAG
32288337 GTT
1 GTT
32288340 AAAAATTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (29 bp):
GTTTTAAGGTTTAGAGTTTAGGGTATAAG
Found at i:32288613 original size:39 final size:36
Alignment explanation
Indices: 32288569--32288642 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 36
32288559 TAAACACCAA
32288569 AAAAATATTTTAAAAATAAAAAGAATAAAAAAGTATTTT
1 AAAAATATTTT-AAAAT-AAAAGAATAAAAAA-TATTTT
*
32288608 AAAAATATTTTAAAATTAAAGAATAAAAAATATTT
1 AAAAATATTTTAAAATAAAAGAATAAAAAATATTT
32288643 ATTTATTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 5 0.15
37 13 0.38
38 5 0.15
39 11 0.32
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (36 bp):
AAAAATATTTTAAAATAAAAGAATAAAAAATATTTT
Found at i:32291635 original size:11 final size:11
Alignment explanation
Indices: 32291616--32291731 Score: 100
Period size: 11 Copynumber: 10.8 Consensus size: 11
32291606 GGATTTAAGA
32291616 GAAATTTGAGAG
1 GAAA-TTGAGAG
32291628 GAAATTGAGAG
1 GAAATTGAGAG
* *
32291639 CAAATTGAGAT
1 GAAATTGAGAG
*
32291650 TAAA-T-AG-G
1 GAAATTGAGAG
*
32291658 G-ATTTGAGA-
1 GAAATTGAGAG
32291667 GAAATTTG-GAAG
1 GAAA-TTGAG-AG
* *
32291679 GCAATTAAGAG
1 GAAATTGAGAG
*
32291690 CAAATTGAGAG
1 GAAATTGAGAG
32291701 GAAATTGAGAG
1 GAAATTGAGAG
32291712 GAAATTGAGAG
1 GAAATTGAGAG
32291723 GAAATTGAG
1 GAAATTGAG
32291732 GAGAGTATTA
Statistics
Matches: 83, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 5 0.06
10 3 0.04
11 65 0.78
12 8 0.10
ACGTcount: A:0.44, C:0.03, G:0.31, T:0.22
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:32291657 original size:51 final size:51
Alignment explanation
Indices: 32291600--32291699 Score: 157
Period size: 51 Copynumber: 2.0 Consensus size: 51
32291590 AATAATTAAA
*
32291600 AAATAGGGATTTAAGAGAAATTT-GAGAGGAAATTGAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTGGA-AGGAAATTAAGAGCAAATTGAGATT
* *
32291651 AAATAGGGATTTGAGAGAAATTTGGAAGGCAATTAAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTGGAAGGAAATTAAGAGCAAATTGAGA
32291700 GGAAATTGAG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 43 0.96
52 2 0.04
ACGTcount: A:0.45, C:0.03, G:0.28, T:0.24
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTGGAAGGAAATTAAGAGCAAATTGAGATT
Found at i:32292140 original size:2 final size:2
Alignment explanation
Indices: 32292133--32292158 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32292123 CCAAGAGATG
32292133 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32292159 TTACATTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32294970 original size:4 final size:4
Alignment explanation
Indices: 32294961--32294992 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
32294951 CCTGTGAAGT
32294961 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
32294993 AATTTTTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:32300891 original size:9 final size:9
Alignment explanation
Indices: 32300877--32300907 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32300867 GTTAAACGAA
32300877 TCGAGTTAT
1 TCGAGTTAT
*
32300886 TCGAGTTAA
1 TCGAGTTAT
32300895 TCGAGTTAT
1 TCGAGTTAT
32300904 TCGA
1 TCGA
32300908 ATCAACTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:32300979 original size:9 final size:9
Alignment explanation
Indices: 32300962--32301007 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
32300952 TGAGTTTTCG
32300962 AATTCGAAT
1 AATTCGAAT
*
32300971 AACTCGAAT
1 AATTCGAAT
32300980 AATTCGAAT
1 AATTCGAAT
32300989 AATTCGAAT
1 AATTCGAAT
32300998 AATTCGAAT
1 AATTCGAAT
32301007 A
1 A
32301008 TGANNNNNNN
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:32305031 original size:3 final size:3
Alignment explanation
Indices: 32305023--32305062 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
32305013 ATTTTAGTGA
*
32305023 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAG TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
32305063 GCTTTTATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:32307681 original size:120 final size:121
Alignment explanation
Indices: 32307551--32307810 Score: 504
Period size: 121 Copynumber: 2.2 Consensus size: 121
32307541 AACGTGGGGG
*
32307551 AAATTATATATTTTTATTAAATTATATTTAATAATAATTAT-TTTAAATTATATTTTATAGTATT
1 AAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATT
32307615 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
66 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
32307671 AAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATT
1 AAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATT
32307736 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
66 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
32307792 AAATTATATATTTTTATTA
1 AAATTATATATTTTTATTA
32307811 TCCATTCCAT
Statistics
Matches: 138, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
120 41 0.30
121 97 0.70
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (121 bp):
AAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGTATT
ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
Found at i:32307893 original size:16 final size:16
Alignment explanation
Indices: 32307844--32307897 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
32307834 AGAATTACCT
*
32307844 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
* * *
32307860 AATACGCATCTATTCC
1 ATTACACCTCTATTCC
32307876 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
32307892 ATTACA
1 ATTACA
32307898 GCGAACTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.28, C:0.33, G:0.04, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:32308076 original size:24 final size:26
Alignment explanation
Indices: 32308037--32308095 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
32308027 TAATTTTAAG
*
32308037 TATATTA-TTTATGATA-AATTGTTT
1 TATATTATTTTATGATATAAGTGTTT
32308061 TATATTATTTTA-GATATTAAGTGTTT
1 TATATTATTTTATGATA-TAAGTGTTT
*
32308087 TAAATTATT
1 TATATTATT
32308096 CCATATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 11 0.37
25 4 0.13
26 15 0.50
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (26 bp):
TATATTATTTTATGATATAAGTGTTT
Found at i:32308103 original size:26 final size:26
Alignment explanation
Indices: 32308056--32308105 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
32308046 TATGATAAAT
* **
32308056 TGTTTTATATTATTTTAGATATTAAG
1 TGTTTTAAATTATTCCAGATATTAAG
*
32308082 TGTTTTAAATTATTCCATATATTA
1 TGTTTTAAATTATTCCAGATATTA
32308106 TTTATGTTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (26 bp):
TGTTTTAAATTATTCCAGATATTAAG
Found at i:32312473 original size:3 final size:3
Alignment explanation
Indices: 32312465--32312544 Score: 160
Period size: 3 Copynumber: 26.7 Consensus size: 3
32312455 AATCACGTCG
32312465 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32312513 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
32312545 TAAAAGTACA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:32312618 original size:21 final size:20
Alignment explanation
Indices: 32312592--32312633 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
32312582 CTAAACGTTT
32312592 AAAAAGGTA-AAGAAAGTAATA
1 AAAAAGGTAGAA-AAA-TAATA
32312613 AAAAAGGTAGAAAAATAATA
1 AAAAAGGTAGAAAAATAATA
32312633 A
1 A
32312634 TAAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 12 0.60
22 2 0.10
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (20 bp):
AAAAAGGTAGAAAAATAATA
Found at i:32324576 original size:33 final size:33
Alignment explanation
Indices: 32324538--32324601 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
32324528 ATATTTGTGT
32324538 TAGGTTATCAGCCTATGCTAAACCTTTATAATG
1 TAGGTTATCAGCCTATGCTAAACCTTTATAATG
32324571 TAGGTTATCAGCCTATGCTAAACCTTTATAA
1 TAGGTTATCAGCCTATGCTAAACCTTTATAA
32324602 CGACACATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (33 bp):
TAGGTTATCAGCCTATGCTAAACCTTTATAATG
Found at i:32328611 original size:7 final size:7
Alignment explanation
Indices: 32328599--32328640 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
32328589 GCTCAATATT
32328599 TTATTTA
1 TTATTTA
32328606 TTATTTA
1 TTATTTA
32328613 TTA-TTA
1 TTATTTA
32328619 -T-TTTA
1 TTATTTA
32328624 TTATTTA
1 TTATTTA
32328631 TTTATTTA
1 -TTATTTA
32328639 TT
1 TT
32328641 CATTCCGAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
5 4 0.13
6 4 0.13
7 16 0.52
8 7 0.23
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTATTTA
Found at i:32328614 original size:11 final size:11
Alignment explanation
Indices: 32328598--32328640 Score: 54
Period size: 10 Copynumber: 3.9 Consensus size: 11
32328588 AGCTCAATAT
32328598 TTTATTTATTA
1 TTTATTTATTA
32328609 TTTA-TTATTA
1 TTTATTTATTA
32328619 TTT-TATTATTTA
1 TTTAT-TTA-TTA
32328631 TTTATTTATT
1 TTTATTTATT
32328641 CATTCCGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
10 9 0.32
11 9 0.32
12 9 0.32
13 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTATTTATTA
Found at i:32328623 original size:22 final size:22
Alignment explanation
Indices: 32328595--32328636 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
32328585 AAGAGCTCAA
32328595 TATTTTATT-TATTATTTATTAT
1 TATTTTATTAT-TTATTTATTAT
32328617 TATTTTATTATTTATTTATT
1 TATTTTATTATTTATTTATT
32328637 TATTCATTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (22 bp):
TATTTTATTATTTATTTATTAT
Found at i:32334322 original size:22 final size:22
Alignment explanation
Indices: 32334292--32334339 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
32334282 TTACCTTTTG
32334292 TTATAAATGATATACTACTA-TA
1 TTATAAATGAT-TACTACTATTA
* *
32334314 TTATCAATGGTTACTACTATTA
1 TTATAAATGATTACTACTATTA
32334336 TTAT
1 TTAT
32334340 TTTATAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (22 bp):
TTATAAATGATTACTACTATTA
Found at i:32334489 original size:31 final size:31
Alignment explanation
Indices: 32334454--32334512 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
32334444 ATTTTGACCT
32334454 TCAACATTTT-AAAAAGAGACGAATTTGATCA
1 TCAAC-TTTTCAAAAAGAGACGAATTTGATCA
**
32334485 TCAACTTTTCAAAAAGAGTTGAATTTGA
1 TCAACTTTTCAAAAAGAGACGAATTTGA
32334513 CTAACAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.16
31 21 0.84
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (31 bp):
TCAACTTTTCAAAAAGAGACGAATTTGATCA
Found at i:32335239 original size:28 final size:28
Alignment explanation
Indices: 32335200--32335261 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
32335190 TGGTCACTCA
*
32335200 TTTTATATTTTTAAAAATTAATTTTA-T
1 TTTTTTATTTTTAAAAATTAATTTTAGT
* *
32335227 TTTTTTATCTTTTTAGAATTAATTTTAGT
1 TTTTTTAT-TTTTAAAAATTAATTTTAGT
32335256 TTTTTT
1 TTTTTT
32335262 TCCTAGTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 7 0.23
28 16 0.53
29 7 0.23
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (28 bp):
TTTTTTATTTTTAAAAATTAATTTTAGT
Found at i:32335239 original size:29 final size:29
Alignment explanation
Indices: 32335200--32335261 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
32335190 TGGTCACTCA
32335200 TTTTATATTTTTAAAAATTAATTTTA-TTT
1 TTTTATATTTTT-AAAATTAATTTTAGTTT
* *
32335229 TTTTATCTTTTTAGAATTAATTTTAGTTT
1 TTTTATATTTTTAAAATTAATTTTAGTTT
32335258 TTTT
1 TTTT
32335262 TCCTAGTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 12 0.40
29 18 0.60
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (29 bp):
TTTTATATTTTTAAAATTAATTTTAGTTT
Found at i:32338704 original size:21 final size:23
Alignment explanation
Indices: 32338674--32338715 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
32338664 ATAAAGGGCT
*
32338674 TTAATCGAAATTCA-AAATAACC
1 TTAATCGAAATTAAGAAATAACC
32338696 TTAA-CGAAATTAAGAAATAA
1 TTAATCGAAATTAAGAAATAA
32338716 AACCCGATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.55, C:0.12, G:0.07, T:0.26
Consensus pattern (23 bp):
TTAATCGAAATTAAGAAATAACC
Found at i:32338766 original size:83 final size:83
Alignment explanation
Indices: 32338627--32338832 Score: 335
Period size: 83 Copynumber: 2.5 Consensus size: 83
32338617 TTAATATCGA
* *
32338627 AAATAAACCCCGATTCAACGAGGTAACAAATTAAGAAATAAAGGGCTTTAATCGAAATTCAAAAT
1 AAATAAAACCCGATTCAACAAGGTAACAAATTAAGAAATAAAGGGCTTTAATCGAAATTCAAAAT
* *
32338692 AACCTTAACGAAATTAAG
66 AACCTTAACCAAATTAAC
32338710 AAATAAAACCCGATTCAACAAGGTAACAAATTAAGAAATAAAGGGCTTTAATCGAAATTCAAAAT
1 AAATAAAACCCGATTCAACAAGGTAACAAATTAAGAAATAAAGGGCTTTAATCGAAATTCAAAAT
32338775 AACCTTAACCAAATTAAC
66 AACCTTAACCAAATTAAC
* *
32338793 AAAT-AAACCCTGATTCAACCAGGTAACAAATTCA-AAATAA
1 AAATAAAACCC-GATTCAACAAGGTAACAAATTAAGAAATAA
32338833 CCTTAACAAA
Statistics
Matches: 116, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
82 12 0.10
83 104 0.90
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.21
Consensus pattern (83 bp):
AAATAAAACCCGATTCAACAAGGTAACAAATTAAGAAATAAAGGGCTTTAATCGAAATTCAAAAT
AACCTTAACCAAATTAAC
Found at i:32339069 original size:12 final size:12
Alignment explanation
Indices: 32339047--32339110 Score: 69
Period size: 12 Copynumber: 5.4 Consensus size: 12
32339037 AACAAACACC
32339047 CCAACCAAAAATG
1 CCAA-CAAAAATG
*
32339060 CTAACAAAAATG
1 CCAACAAAAATG
32339072 CCAAC-AAAATG
1 CCAACAAAAATG
* * *
32339083 CTAATAGAAATG
1 CCAACAAAAATG
32339095 CCAAC-AAAATG
1 CCAACAAAAATG
32339106 CCAAC
1 CCAAC
32339111 CAGAAATGCT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
11 19 0.45
12 20 0.48
13 3 0.07
ACGTcount: A:0.53, C:0.25, G:0.09, T:0.12
Consensus pattern (12 bp):
CCAACAAAAATG
Found at i:32339080 original size:11 final size:11
Alignment explanation
Indices: 32339054--32339110 Score: 69
Period size: 11 Copynumber: 5.0 Consensus size: 11
32339044 ACCCCAACCA
*
32339054 AAAATGCTAAC
1 AAAATGCCAAC
32339065 AAAAATGCCAAC
1 -AAAATGCCAAC
* *
32339077 AAAATGCTAAT
1 AAAATGCCAAC
32339088 AGAAATGCCAAC
1 A-AAATGCCAAC
32339100 AAAATGCCAAC
1 AAAATGCCAAC
32339111 CAGAAATGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
11 20 0.51
12 19 0.49
ACGTcount: A:0.54, C:0.21, G:0.11, T:0.14
Consensus pattern (11 bp):
AAAATGCCAAC
Found at i:32339084 original size:23 final size:23
Alignment explanation
Indices: 32339054--32339106 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
32339044 ACCCCAACCA
32339054 AAAATGCTAACAAAAATGCCAAC
1 AAAATGCTAACAAAAATGCCAAC
* *
32339077 AAAATGCTAATAGAAATGCCAAC
1 AAAATGCTAACAAAAATGCCAAC
32339100 AAAATGC
1 AAAATGC
32339107 CAACCAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.55, C:0.19, G:0.11, T:0.15
Consensus pattern (23 bp):
AAAATGCTAACAAAAATGCCAAC
Found at i:32339253 original size:23 final size:23
Alignment explanation
Indices: 32339227--32339316 Score: 101
Period size: 23 Copynumber: 3.8 Consensus size: 23
32339217 GGAATTCCAA
*
32339227 GAAATGAAATTGGGGATATTAGG
1 GAAATGAAATTGGGGAAATTAGG
* * *
32339250 GAAATAAAATCGGGGAAATTGGGG
1 GAAATGAAATTGGGGAAATT-AGG
*
32339274 GAAA-GAAAAATTTGGGAAATTAGG
1 GAAATG--AAATTGGGGAAATTAGG
32339298 GAAATGAAATTGGGGAAAT
1 GAAATGAAATTGGGGAAAT
32339317 CTGAGTGGGG
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
23 29 0.54
24 12 0.22
25 13 0.24
ACGTcount: A:0.44, C:0.01, G:0.33, T:0.21
Consensus pattern (23 bp):
GAAATGAAATTGGGGAAATTAGG
Found at i:32339680 original size:115 final size:115
Alignment explanation
Indices: 32339470--32339689 Score: 307
Period size: 115 Copynumber: 1.9 Consensus size: 115
32339460 TCAATCCTTT
* * * *
32339470 TGCGGCGTTTAAGTAAAAACGCCACTAAAATCGCAAACGAAAACGACTGCGTTTAGCAAAGACTT
1 TGCGGCGTTTAAGGAAAAACGCCACTAAAAGCGCAAACGAAAACGACGGCGTTTAGCAAACACTT
* * * *
32339535 AAAAATTAATTGCGGCATTTTTCATCAAAACGCCAGTAAAACTTACCATC
66 AAAAAATAATTGCGGCATTTATCATAAAAACGCCACTAAAACTTACCATC
** *
32339585 TGCGGCGTTT-AGGAACAAACGCCACTAAAAGCGCAAATTAAAACGACGGTGTTTAGCAAACACT
1 TGCGGCGTTTAAGGAA-AAACGCCACTAAAAGCGCAAACGAAAACGACGGCGTTTAGCAAACACT
* *
32339649 TAAAAAATAATTGCGGCGTTTATCGTAAAAACGCCACTAAA
65 TAAAAAATAATTGCGGCATTTATCATAAAAACGCCACTAAA
32339690 TACGCAAATT
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
114 4 0.04
115 87 0.96
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (115 bp):
TGCGGCGTTTAAGGAAAAACGCCACTAAAAGCGCAAACGAAAACGACGGCGTTTAGCAAACACTT
AAAAAATAATTGCGGCATTTATCATAAAAACGCCACTAAAACTTACCATC
Found at i:32339732 original size:75 final size:75
Alignment explanation
Indices: 32339585--32339842 Score: 378
Period size: 75 Copynumber: 3.4 Consensus size: 75
32339575 ACTTACCATC
*
32339585 TGCGGCGTTTA--GGAACAAACGCCACTAAAAGCGCAAATTAAAACGACGGTGTTTAGCAAACAC
1 TGCGGCGTTTATCGTAA-AAACGCCACTAAAA-CGCAAATTAAAACGACGGTGTTTAGCAAACAC
32339648 TTAAAAAATAAT
64 TTAAAAAATAAT
32339660 TGCGGCGTTTATCGTAAAAACGCCACTAAATACGCAAATTAAAACGACGGTGTTTAGC-AACACT
1 TGCGGCGTTTATCGTAAAAACGCCACTAAA-ACGCAAATTAAAACGACGGTGTTTAGCAAACACT
32339724 TAAAAAATAAT
65 TAAAAAATAAT
* * * *
32339735 TGCGGCGTTTATCGTAAAAACGCCACTAAAAATGCAAACTAAAACGACTGTGTTTAGCAAAGACT
1 TGCGGCGTTTATCGTAAAAACGCCACT-AAAACGCAAATTAAAACGACGGTGTTTAGCAAACACT
*
32339800 TAAAACATAAT
65 TAAAAAATAAT
* * *
32339811 TGCGGCGTTTATAGTAAAAATGACACTAAAAC
1 TGCGGCGTTTATCGTAAAAACGCCACTAAAAC
32339843 ATACATTTTA
Statistics
Matches: 168, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
75 83 0.49
76 81 0.48
77 4 0.02
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (75 bp):
TGCGGCGTTTATCGTAAAAACGCCACTAAAACGCAAATTAAAACGACGGTGTTTAGCAAACACTT
AAAAAATAAT
Found at i:32339869 original size:113 final size:114
Alignment explanation
Indices: 32339750--32340006 Score: 338
Period size: 113 Copynumber: 2.3 Consensus size: 114
32339740 CGTTTATCGT
* * *
32339750 AAAAACGCCACTAAAAATGCAAACTAAAACGACTGTGTTTAGCAAAGACTTAAAACATAATTGCG
1 AAAAACGCCACTAAAAATGCAAATTAAAACGACTGCGTTTAGAAAAGACTTAAAACATAATTGCG
* *
32339815 GCGTTTATAGTAAAAATGACACTAAAACATACATTTTACGGTGTTTA-A
66 GCGTTTATAGTAAAAACGACACTAAAACATACATTTTACGGCGTTTAGA
* * *
32339863 AAAAACGCCAC-AAAGAATGCAATTTAGAACGACTGCGTTTAGAAAAGACTTCAAACATAATTGC
1 AAAAACGCCACTAAA-AATGCAAATTAAAACGACTGCGTTTAGAAAAGACTTAAAACATAATTGC
* * * ** * *
32339927 GGCGTTTATCGTAACAACGCCACTAAAATTTACCTTTTGCGGCGTTTATGA
65 GGCGTTTATAGTAAAAACGACACTAAAACATACATTTTACGGCGTTTA-GA
*
32339978 AAAAACGCCACTAAAAACGCAAATTAAAA
1 AAAAACGCCACTAAAAATGCAAATTAAAA
32340007 TTACTGCATT
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
112 3 0.02
113 93 0.76
115 23 0.19
116 3 0.02
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (114 bp):
AAAAACGCCACTAAAAATGCAAATTAAAACGACTGCGTTTAGAAAAGACTTAAAACATAATTGCG
GCGTTTATAGTAAAAACGACACTAAAACATACATTTTACGGCGTTTAGA
Found at i:32340343 original size:7 final size:7
Alignment explanation
Indices: 32340333--32340586 Score: 61
Period size: 7 Copynumber: 35.7 Consensus size: 7
32340323 AAGCTCCCAG
32340333 CTAAACC
1 CTAAACC
*
32340340 CTAAACA
1 CTAAACC
* *
32340347 ATAAACA
1 CTAAACC
* *
32340354 ATAAACA
1 CTAAACC
* *
32340361 ATAAACA
1 CTAAACC
32340368 CTAAACC
1 CTAAACC
*
32340375 ATAAACC
1 CTAAACC
*
32340382 C-ACACC
1 CTAAACC
* *
32340388 CTACACT
1 CTAAACC
32340395 CTAAACC
1 CTAAACC
* *
32340402 GTAAACA
1 CTAAACC
32340409 CTAATA--
1 CTAA-ACC
* *
32340415 TTAAATC
1 CTAAACC
*
32340422 ATAAACC
1 CTAAACC
* *
32340429 TTAAACT
1 CTAAACC
*
32340436 TTAAACC
1 CTAAACC
*
32340443 ATAAA-C
1 CTAAACC
**
32340449 CTCCACC
1 CTAAACC
32340456 CTAAACC
1 CTAAACC
* *
32340463 GTAAACA
1 CTAAACC
*
32340470 CTAAATC
1 CTAAACC
* *
32340477 GT-AAGC
1 CTAAACC
*
32340483 CAATAACC
1 CTA-AACC
*
32340491 CTTAAATC
1 C-TAAACC
*
32340499 CTAAGCC
1 CTAAACC
32340506 C-ATAACC
1 CTA-AACC
32340513 CTAAACC
1 CTAAACC
32340520 CTTAAACC
1 C-TAAACC
*
32340528 CTAATCC
1 CTAAACC
*
32340535 TTTAAACC
1 -CTAAACC
* *
32340543 TTAAATCT
1 CTAAA-CC
32340551 CTAAACC
1 CTAAACC
*
32340558 ATAAACC
1 CTAAACC
32340565 CTTAAACCC
1 C-TAAA-CC
32340574 CTAAACCC
1 CTAAA-CC
32340582 CTAAA
1 CTAAA
32340587 TCATAAACTA
Statistics
Matches: 184, Mismatches: 48, Indels: 29
0.70 0.18 0.11
Matches are distributed among these distances:
5 1 0.01
6 15 0.08
7 121 0.66
8 43 0.23
9 4 0.02
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:32340503 original size:22 final size:22
Alignment explanation
Indices: 32340471--32340514 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
32340461 CCGTAAACAC
*
32340471 TAAATCGTAAGCCAATAACCCT
1 TAAATCCTAAGCCAATAACCCT
*
32340493 TAAATCCTAAGCCCATAACCCT
1 TAAATCCTAAGCCAATAACCCT
32340515 AAACCCTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.32, G:0.07, T:0.23
Consensus pattern (22 bp):
TAAATCCTAAGCCAATAACCCT
Found at i:32340527 original size:8 final size:8
Alignment explanation
Indices: 32340487--32340586 Score: 61
Period size: 8 Copynumber: 13.2 Consensus size: 8
32340477 GTAAGCCAAT
32340487 AACCCTTA
1 AACCCTTA
*
32340495 AATCC-TA
1 AACCCTTA
* *
32340502 AGCCCAT-
1 AACCCTTA
32340509 AACCC-TA
1 AACCCTTA
32340516 AACCCTTA
1 AACCCTTA
32340524 AACCC-TA
1 AACCCTTA
* *
32340531 ATCCTTTA
1 AACCCTTA
32340539 AA-CCTTA
1 AACCCTTA
*
32340546 AA-TCTCTA
1 AACCCT-TA
*
32340554 AA-CCATA
1 AACCCTTA
32340561 AACCCTTA
1 AACCCTTA
*
32340569 AACCCCTA
1 AACCCTTA
*
32340577 AACCCCTA
1 AACCCTTA
32340585 AA
1 AA
32340587 TCATAAACTA
Statistics
Matches: 73, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
6 1 0.01
7 31 0.42
8 41 0.56
ACGTcount: A:0.40, C:0.36, G:0.01, T:0.23
Consensus pattern (8 bp):
AACCCTTA
Found at i:32340529 original size:15 final size:15
Alignment explanation
Indices: 32340487--32340586 Score: 87
Period size: 15 Copynumber: 6.7 Consensus size: 15
32340477 GTAAGCCAAT
*
32340487 AACCCTTAAATCCTA
1 AACCCTTAAACCCTA
* *
32340502 AGCCCAT-AACCCTA
1 AACCCTTAAACCCTA
32340516 AACCCTTAAACCCTA
1 AACCCTTAAACCCTA
* * *
32340531 ATCCTTTAAACCTTA
1 AACCCTTAAACCCTA
* *
32340546 AA-TCTCTAAACCATA
1 AACCCT-TAAACCCTA
32340561 AACCCTTAAACCCCTA
1 AACCCTTAAA-CCCTA
*
32340577 AACCCCTAAA
1 AACCCTTAAA
32340587 TCATAAACTA
Statistics
Matches: 66, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
14 12 0.18
15 39 0.59
16 15 0.23
ACGTcount: A:0.40, C:0.36, G:0.01, T:0.23
Consensus pattern (15 bp):
AACCCTTAAACCCTA
Found at i:32340641 original size:22 final size:22
Alignment explanation
Indices: 32340609--32340651 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32340599 GATTAAACTG
32340609 TAAACCATAAGCC-ACTAACCCA
1 TAAACCATAAGCCTA-TAACCCA
*
32340631 TAAACCCTAAGCCTATAACCC
1 TAAACCATAAGCCTATAACCC
32340652 TTAGCTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.42, C:0.37, G:0.05, T:0.16
Consensus pattern (22 bp):
TAAACCATAAGCCTATAACCCA
Found at i:32341052 original size:15 final size:15
Alignment explanation
Indices: 32341032--32341060 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32341022 ATCTATAGCG
32341032 GCGCTTTTTCAAAAA
1 GCGCTTTTTCAAAAA
32341047 GCGCTTTTTCAAAA
1 GCGCTTTTTCAAAA
32341061 CTCATATAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (15 bp):
GCGCTTTTTCAAAAA
Found at i:32341937 original size:18 final size:17
Alignment explanation
Indices: 32341914--32341947 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32341904 TAAAAAATCT
32341914 TTATATATAAAGTTTATG
1 TTATATA-AAAGTTTATG
*
32341932 TTATATAAAATTTTAT
1 TTATATAAAAGTTTAT
32341948 ATACAAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
TTATATAAAAGTTTATG
Found at i:32343502 original size:26 final size:26
Alignment explanation
Indices: 32343448--32343510 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
32343438 ACATATTTTC
* *
32343448 TCAAAATTTTACTAGGGGAAAAATCA
1 TCAAAATTTTACCAAGGGAAAAATCA
* * *
32343474 TCAAAATTTTACCAAGGGTAATATTA
1 TCAAAATTTTACCAAGGGAAAAATCA
*
32343500 TCAAAAGTTTA
1 TCAAAATTTTA
32343511 TTGGGGATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (26 bp):
TCAAAATTTTACCAAGGGAAAAATCA
Found at i:32348833 original size:83 final size:82
Alignment explanation
Indices: 32348642--32348891 Score: 430
Period size: 83 Copynumber: 3.0 Consensus size: 82
32348632 ATATCTCTCC
* * *
32348642 CACA-TGTGATTCATCCTAACAACTATATATTTGGTTTTTCTACTTAATTAAGTTGGTTATGCAA
1 CACAGTGTGATTCATCCTAACAACTATAAATTAGGTTTTTCTACTTAATTAAGCTGGTTATGCAA
32348706 AGTTTTTTTAATTTGTT
66 AGTTTTTTTAATTTGTT
*
32348723 CATAGTGTGATTCATCCTAACAACTATAAATTAGGTTTTTCTACTTAATTAAGCTGGTTATGCAA
1 CACAGTGTGATTCATCCTAACAACTATAAATTAGGTTTTTCTACTTAATTAAGCTGGTTATGCAA
32348788 AGTTTTTTTTAATTTGTT
66 AG-TTTTTTTAATTTGTT
* *
32348806 TACAGTGTGATTCATCCTAACAACTATAAATTAGGTTTTTCTACTTAATTAAGCTAGTTATGCAA
1 CACAGTGTGATTCATCCTAACAACTATAAATTAGGTTTTTCTACTTAATTAAGCTGGTTATGCAA
32348871 AGTTTTTTTAATTTGTT
66 AGTTTTTTTAATTTGTT
32348888 CACA
1 CACA
32348892 TGGGCAGCGT
Statistics
Matches: 159, Mismatches: 8, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
81 3 0.02
82 77 0.48
83 79 0.50
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.46
Consensus pattern (82 bp):
CACAGTGTGATTCATCCTAACAACTATAAATTAGGTTTTTCTACTTAATTAAGCTGGTTATGCAA
AGTTTTTTTAATTTGTT
Found at i:32349516 original size:17 final size:17
Alignment explanation
Indices: 32349485--32349532 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
32349475 GAATTTAGAA
*
32349485 GAATTTT-TGAATTAGT
1 GAATTTTGTGATTTAGT
32349501 GAATTTTGTGATTTAGT
1 GAATTTTGTGATTTAGT
*
32349518 GAATTTTGCGATTTA
1 GAATTTTGTGATTTA
32349533 AAAAGAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.27, C:0.02, G:0.21, T:0.50
Consensus pattern (17 bp):
GAATTTTGTGATTTAGT
Found at i:32349912 original size:125 final size:128
Alignment explanation
Indices: 32349705--32349944 Score: 459
Period size: 125 Copynumber: 1.9 Consensus size: 128
32349695 GGACTAAATT
32349705 GAAAATATTACAAAATTTATTAAATTGTGATTAAATAGCTTAAGTGACTAATAAGGAGGGATTTA
1 GAAAATATTACAAAATTTATTAAATTGTGATTAAATAGCTTAAGTGACTAATAAGGAGGGATTTA
32349770 AAAGCAATTAGGCCTAAAGTATATGGGCT-GGACGG-TTGGGCAAGAAAAATCAGCAAGAAAG
66 AAAGCAATTAGGCCTAAAGTATATGGGCTGGGACGGTTTGGGCAAGAAAAATCAGCAAGAAAG
32349831 GAAAATATTA-AAAATTTATTAAATTGTGATTAAATAGCTTAAGTGACTAATAAGGAGGGATTTA
1 GAAAATATTACAAAATTTATTAAATTGTGATTAAATAGCTTAAGTGACTAATAAGGAGGGATTTA
32349895 AAAGCAATTAGGCCTAAAGTATATGGGCTGGGACGGTTTGGGCAAGAAAA
66 AAAGCAATTAGGCCTAAAGTATATGGGCTGGGACGGTTTGGGCAAGAAAA
32349945 TAAGGAGAAA
Statistics
Matches: 112, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
125 83 0.74
126 16 0.14
127 13 0.12
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (128 bp):
GAAAATATTACAAAATTTATTAAATTGTGATTAAATAGCTTAAGTGACTAATAAGGAGGGATTTA
AAAGCAATTAGGCCTAAAGTATATGGGCTGGGACGGTTTGGGCAAGAAAAATCAGCAAGAAAG
Found at i:32350803 original size:46 final size:46
Alignment explanation
Indices: 32350751--32350840 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
32350741 GGTAAATTGT
*
32350751 GAAAAGTAGGTATGGTGCTTCGGTGAAGAAAACCATACTGAGTTGC
1 GAAAAGTAGGTATGGTGCTTCAGTGAAGAAAACCATACTGAGTTGC
* *
32350797 GAAAAGTAGGTATGGTGTTTCAGTGAAGGAAACCATACTGAGTT
1 GAAAAGTAGGTATGGTGCTTCAGTGAAGAAAACCATACTGAGTT
32350841 ATTCTTCAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (46 bp):
GAAAAGTAGGTATGGTGCTTCAGTGAAGAAAACCATACTGAGTTGC
Found at i:32352751 original size:46 final size:46
Alignment explanation
Indices: 32352695--32352831 Score: 157
Period size: 46 Copynumber: 3.0 Consensus size: 46
32352685 TGGCCAAGTA
* * **
32352695 TGAAACGTAGGTATGGTATTCCAGTGAAGAAAGTCATACTGAGTTG
1 TGAAAAGTAGGTATGGTATTCCAATGAAGAAAACCATACTGAGTTG
* **
32352741 TGAAAAGTAGGTATAGTATTTTAATGAAGAAAACCATACTGAGTTG
1 TGAAAAGTAGGTATGGTATTCCAATGAAGAAAACCATACTGAGTTG
* * ** * *
32352787 TGAAAAGTAGGAATGGTATTTCGGTAAAGAAAACCATACTAAGTT
1 TGAAAAGTAGGTATGGTATTCCAATGAAGAAAACCATACTGAGTT
32352832 ATAGCCTTGT
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (46 bp):
TGAAAAGTAGGTATGGTATTCCAATGAAGAAAACCATACTGAGTTG
Found at i:32360250 original size:145 final size:145
Alignment explanation
Indices: 32360006--32360290 Score: 525
Period size: 145 Copynumber: 2.0 Consensus size: 145
32359996 TTGGGGACAC
32360006 TATTTATACGGTGAGAAATGCTATGTGTATACAGATCATAAAAGTCTGAAGTATTTAATGACTCA
1 TATTTATACGGTGAGAAATGCTATGTGTATACAGATCATAAAAGTCTGAAGTATTTAATGACTCA
* *
32360071 GAAGGAGTTGAATTTAAAACAGAGACAGTGGTTCGAGTTGTTAAAAGATTATGATCTTGTTTTTG
66 GAAGAAGTTGAATTTAAAACAGAGACAGTGGTTCGAGTTGTTAAAAGATTATGATCTTGTTATTG
32360136 ATTACCACCCTGGAT
131 ATTACCACCCTGGAT
*
32360151 TATTTATACGGTGAGAAATGTTATGTGTATACAGATCATAAAAGTCTGAAGTATTTAATGACTCA
1 TATTTATACGGTGAGAAATGCTATGTGTATACAGATCATAAAAGTCTGAAGTATTTAATGACTCA
* *
32360216 GAAGAAGTTGAATTTAAGACAGAGACGGTGGTTCGAGTTGTTAAAAGATTATGATCTTGTTATTG
66 GAAGAAGTTGAATTTAAAACAGAGACAGTGGTTCGAGTTGTTAAAAGATTATGATCTTGTTATTG
32360281 ATTACCACCC
131 ATTACCACCC
32360291 GGAGAAAGCT
Statistics
Matches: 135, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 135 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (145 bp):
TATTTATACGGTGAGAAATGCTATGTGTATACAGATCATAAAAGTCTGAAGTATTTAATGACTCA
GAAGAAGTTGAATTTAAAACAGAGACAGTGGTTCGAGTTGTTAAAAGATTATGATCTTGTTATTG
ATTACCACCCTGGAT
Found at i:32362000 original size:17 final size:17
Alignment explanation
Indices: 32361963--32362011 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
32361953 GACTTTAGAA
*
32361963 GAATTTT-TGAATTAAT
1 GAATTTTGTGATTTAAT
*
32361979 GAATTTTGTGATTTAGT
1 GAATTTTGTGATTTAAT
*
32361996 GAATTTTGCGATTTAA
1 GAATTTTGTGATTTAA
32362012 AAAGAATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 7 0.25
17 21 0.75
ACGTcount: A:0.31, C:0.02, G:0.18, T:0.49
Consensus pattern (17 bp):
GAATTTTGTGATTTAAT
Found at i:32365508 original size:13 final size:13
Alignment explanation
Indices: 32365490--32365517 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32365480 AAATTCATTC
32365490 CTTACTTATTCAG
1 CTTACTTATTCAG
32365503 CTTACTTATTCAG
1 CTTACTTATTCAG
32365516 CT
1 CT
32365518 ATCAAGGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.07, T:0.46
Consensus pattern (13 bp):
CTTACTTATTCAG
Found at i:32367122 original size:42 final size:42
Alignment explanation
Indices: 32367019--32367179 Score: 148
Period size: 42 Copynumber: 3.8 Consensus size: 42
32367009 CAACAGCTCG
* *
32367019 TACAATGCC-ATCGTCCCAAACATAGTCTTACATGTAATCAAA
1 TACAATGCCAAT-GTCCCAGACATGGTCTTACATGTAATCAAA
* * * *
32367061 TATCGATGCCACTGTCCCAGACAGGGTCTTACATG-AAGTCATA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAA-TCAAA
*
32367104 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGT-AA--TCAAA
* * **
32367149 T-CGATGCCAACGTCCCAGATGTGGTCTTACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACA
32367180 CGAAATCACA
Statistics
Matches: 97, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 32 0.33
43 31 0.32
44 29 0.30
45 5 0.05
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAA
Found at i:32388903 original size:18 final size:18
Alignment explanation
Indices: 32388869--32388901 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
32388859 AAAAATCACT
32388869 TTTATCTTTTTTATTTTC
1 TTTATCTTTTTTATTTTC
32388887 TTTA--TTTTTTATTTT
1 TTTATCTTTTTTATTTT
32388902 TTAAAATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 11 0.73
18 4 0.27
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTATCTTTTTTATTTTC
Found at i:32389972 original size:33 final size:33
Alignment explanation
Indices: 32389932--32390007 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
32389922 AAATTAATTT
* *
32389932 ATATTTTATATATTATTCTATTAAATTATTTAA
1 ATATTTTATATATCATTATATTAAATTATTTAA
* *
32389965 ATATTTTATGTATCGTTATATTAAATTATTTAA
1 ATATTTTATATATCATTATATTAAATTATTTAA
*
32389998 ATATGTTATA
1 ATATTTTATA
32390008 AAAATAGGGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (33 bp):
ATATTTTATATATCATTATATTAAATTATTTAA
Found at i:32394463 original size:5 final size:5
Alignment explanation
Indices: 32394453--32394480 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
32394443 ATAGAATTCA
32394453 AATCG AATCG AATCG AATCG AATCG AAT
1 AATCG AATCG AATCG AATCG AATCG AAT
32394481 ATATTTGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (5 bp):
AATCG
Found at i:32395144 original size:9 final size:9
Alignment explanation
Indices: 32395126--32395162 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
32395116 TATAGTTTGA
32395126 TATTCGAAT
1 TATTCGAAT
*
32395135 TATTCAAAT
1 TATTCGAAT
*
32395144 TATTCGAGT
1 TATTCGAAT
32395153 TATTCGAAT
1 TATTCGAAT
32395162 T
1 T
32395163 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32402611 original size:41 final size:40
Alignment explanation
Indices: 32402554--32402684 Score: 136
Period size: 41 Copynumber: 3.1 Consensus size: 40
32402544 ACTTCTGAGG
*
32402554 TATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTA
1 TATGA-TTCATGTAAGACCATGTCTGGGACA-TGGCATCGTA
* *
32402596 TATGATTCATGTAAGACCCTGTCTGGGACAAGGGCATCGATA
1 TATGATTCATGTAAGACCATGTCTGGGAC-ATGGCATCG-TA
* * * * *
32402638 TGTGATAACATGTAAGACCATATCTGGGATATGGCATTGTA
1 TATGAT-TCATGTAAGACCATGTCTGGGACATGGCATCGTA
*
32402679 TGTGAT
1 TATGAT
32402685 ATATGTGTTT
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
41 37 0.49
42 20 0.26
43 19 0.25
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (40 bp):
TATGATTCATGTAAGACCATGTCTGGGACATGGCATCGTA
Found at i:32406242 original size:26 final size:26
Alignment explanation
Indices: 32406213--32406267 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
32406203 TGGGGCACCT
*
32406213 CGCCCCAGCCATGACATCGGCAGCCC
1 CGCCCCAACCATGACATCGGCAGCCC
32406239 CGCCCCAACCATGACATCGGCAGCCC
1 CGCCCCAACCATGACATCGGCAGCCC
32406265 CGC
1 CGC
32406268 AAGGAGGCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.20, C:0.51, G:0.22, T:0.07
Consensus pattern (26 bp):
CGCCCCAACCATGACATCGGCAGCCC
Found at i:32408597 original size:21 final size:23
Alignment explanation
Indices: 32408568--32408625 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 23
32408558 ATTATAATAA
*
32408568 TAAATTATTACATTTTATTT-T-
1 TAAAATATTACATTTTATTTATC
*
32408589 TAAAATATTA-A-ATTATTTATC
1 TAAAATATTACATTTTATTTATC
*
32408610 TCAAATATTACATTTT
1 TAAAATATTACATTTT
32408626 TCTATTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
19 6 0.21
20 2 0.07
21 18 0.62
22 1 0.03
23 2 0.07
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (23 bp):
TAAAATATTACATTTTATTTATC
Found at i:32409309 original size:12 final size:12
Alignment explanation
Indices: 32409292--32409316 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32409282 TCATAATCGA
32409292 TTAGTTAACATG
1 TTAGTTAACATG
32409304 TTAGTTAACATG
1 TTAGTTAACATG
32409316 T
1 T
32409317 GACAGTGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TTAGTTAACATG
Found at i:32418805 original size:27 final size:27
Alignment explanation
Indices: 32418764--32418833 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
32418754 CATTTACGAA
* *
32418764 AAATAAATTACATTAAATATAGTAGTT
1 AAATAAATTATATTAAAGATAGTAGTT
*
32418791 AAATAAATTATATTAAAGATGGTAGTT
1 AAATAAATTATATTAAAGATAGTAGTT
32418818 AACAGTAAA-TATATTA
1 AA-A-TAAATTATATTA
32418834 TAATGATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 26 0.68
28 8 0.21
29 4 0.11
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (27 bp):
AAATAAATTATATTAAAGATAGTAGTT
Found at i:32419097 original size:13 final size:13
Alignment explanation
Indices: 32419081--32419105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32419071 AAATTTTTAA
32419081 TTTTTAATTAATG
1 TTTTTAATTAATG
32419094 TTTTTAATTAAT
1 TTTTTAATTAAT
32419106 AACTCTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:32419206 original size:99 final size:101
Alignment explanation
Indices: 32419094--32419297 Score: 263
Period size: 99 Copynumber: 2.0 Consensus size: 101
32419084 TTAATTAATG
* * * *
32419094 TTTTTAATTAATAACTCTTTTATTTATAAAAATAAAATAAGAAATATAG-AATTATATAGTG-AA
1 TTTTTAATCAATAACTCCTTTATTTATAAAAACAAAATAAGAAATAT-GTAATTATATAATGAAA
*
32419157 AATATA-TTTGATATATTTCATTATTGTTAAAA-ATTT
65 AATATATTTTGATATATATCATTA-TGTTAAAATATTT
* * *
32419193 TTTTTAATCAATAACTCCTTTATTTATATAAACAAAATAATAAATATGTAGTTATATAATGAAAA
1 TTTTTAATCAATAACTCCTTTATTTATAAAAACAAAATAAGAAATATGTAATTATATAATG--AA
32419258 AAATATATTTTTGATATATATCATTATGTTAAAATATTT
64 AAATATA-TTTTGATATATATCATTATGTTAAAATATTT
32419297 T
1 T
32419298 ATATTTCAAG
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
98 1 0.01
99 52 0.58
102 8 0.09
103 8 0.09
104 21 0.23
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.45
Consensus pattern (101 bp):
TTTTTAATCAATAACTCCTTTATTTATAAAAACAAAATAAGAAATATGTAATTATATAATGAAAA
ATATATTTTGATATATATCATTATGTTAAAATATTT
Found at i:32422706 original size:24 final size:24
Alignment explanation
Indices: 32422679--32422727 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
32422669 ATAATAAGTG
32422679 TGTGACTAGCTTTGGCTAAAAAAA
1 TGTGACTAGCTTTGGCTAAAAAAA
32422703 TGTGACTAGCTTTGGCTAAAAAAA
1 TGTGACTAGCTTTGGCTAAAAAAA
32422727 T
1 T
32422728 ACTTTTGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (24 bp):
TGTGACTAGCTTTGGCTAAAAAAA
Found at i:32423945 original size:21 final size:21
Alignment explanation
Indices: 32423921--32423966 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
32423911 GATTAATCAC
*
32423921 TCTTTTATGATTCTTGCCAAA
1 TCTTTTATGAATCTTGCCAAA
* * *
32423942 TCTTTTGTTAATCTTGTCAAA
1 TCTTTTATGAATCTTGCCAAA
32423963 TCTT
1 TCTT
32423967 GAACCCAGCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52
Consensus pattern (21 bp):
TCTTTTATGAATCTTGCCAAA
Found at i:32427144 original size:14 final size:16
Alignment explanation
Indices: 32427109--32427146 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
32427099 GCTTGCTCAA
32427109 ATATATGTGTTACATG
1 ATATATGTGTTACATG
*
32427125 ATATATGT-TTGCATG
1 ATATATGTGTTACATG
32427140 A-ATATGT
1 ATATATGT
32427147 AAATGCTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.29
15 7 0.33
16 8 0.38
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (16 bp):
ATATATGTGTTACATG
Found at i:32429833 original size:91 final size:88
Alignment explanation
Indices: 32429674--32429862 Score: 263
Period size: 91 Copynumber: 2.1 Consensus size: 88
32429664 AACCATTTTA
* * * *
32429674 TGGATAAACCACCAGTGTTGCAGGTTAATATGTTGTCAGTAGTTGTGAATACACAATGGGTTTAT
1 TGGATAAACCACAAGTGTTGCAGGTTAATATGCTGCCACTAGTTGTGAATACACAATGGGTTTAT
*
32429739 AGA-TAATAGTTTCCAGTATAAGTTG
66 AGATTAA-AGTTGCCAG--TAAGTTG
*
32429764 TGGATAAACCACAAGTGCTTGCAGGTTAATATGCTGCCACTAGTTGTGAATACACAATGGGTTTG
1 TGGATAAACCACAAGTG-TTGCAGGTTAATATGCTGCCACTAGTTGTGAATACACAATGGGTTTA
* *
32429829 TAGATTAAAGTTGCTAGTAATTTG
65 TAGATTAAAGTTGCCAGTAAGTTG
32429853 TGGATAAACC
1 TGGATAAACC
32429863 TCCAGTATTT
Statistics
Matches: 89, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
89 16 0.18
90 16 0.18
91 54 0.61
92 3 0.03
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (88 bp):
TGGATAAACCACAAGTGTTGCAGGTTAATATGCTGCCACTAGTTGTGAATACACAATGGGTTTAT
AGATTAAAGTTGCCAGTAAGTTG
Found at i:32432580 original size:13 final size:13
Alignment explanation
Indices: 32432562--32432589 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32432552 TAATAGAACT
32432562 TAAACTTACCATA
1 TAAACTTACCATA
32432575 TAAACTTACCATA
1 TAAACTTACCATA
32432588 TA
1 TA
32432590 CATTAGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAACTTACCATA
Found at i:32433316 original size:36 final size:36
Alignment explanation
Indices: 32433227--32433394 Score: 106
Period size: 36 Copynumber: 4.6 Consensus size: 36
32433217 AAAGTTTTAC
* * * **
32433227 GCCCAGCGCTAGTCGAATAAACTGAAAATG-GGTGTA
1 GCCCAGCGCTAGTCGGATAAACCGACAATGTCTTG-A
* *
32433263 -CCCTGCACTAGTCGGATAAACCGACAATGTCTTGA
1 GCCCAGCGCTAGTCGGATAAACCGACAATGTCTTGA
* * * * *
32433298 GCCTAGCGCTAGTTGGATAAACTGACGATGTCAAATATGT
1 GCCCAGCGCTAGTCGGATAAACCGACAATGTC---T-TGA
* * * * * *
32433338 GCCCAGCACTAGTCGAATAACCCAACAATGTTTTGC
1 GCCCAGCGCTAGTCGGATAAACCGACAATGTCTTGA
*
32433374 GCCCAGCGCTAGTTGGATAAA
1 GCCCAGCGCTAGTCGGATAAA
32433395 TTGACGATAT
Statistics
Matches: 98, Mismatches: 28, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
35 25 0.26
36 46 0.47
37 1 0.01
39 1 0.01
40 25 0.26
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (36 bp):
GCCCAGCGCTAGTCGGATAAACCGACAATGTCTTGA
Found at i:32433382 original size:76 final size:76
Alignment explanation
Indices: 32433267--32433578 Score: 318
Period size: 76 Copynumber: 4.1 Consensus size: 76
32433257 GGTGTACCCT
* * * * * *
32433267 GCACTAGTCGGATAAACCGACAATGTCTTGAGCCTAGCGCTAGTTGGATAAACTGACGATGTCAA
1 GCACTAGTCGAATAAACCAACAATGTCTTGCGCCCAGCGCTAATCGGATAAACTGACGATGTCAA
32433332 ATATGTGCCCA
66 ATATGTGCCCA
* * * * * *
32433343 GCACTAGTCGAATAACCCAACAATGTTTTGCGCCCAGCGCTAGTTGGATAAATTGACGATATCAA
1 GCACTAGTCGAATAAACCAACAATGTCTTGCGCCCAGCGCTAATCGGATAAACTGACGATGTCAA
* *
32433408 ATGTGTGTCCA
66 ATATGTGCCCA
* ** * ** * **
32433419 GCACTAGCCGAATAAACCAACAGCGTCTTGTGCCCAATGCTAATCGGATAAACCGAAAATGTCAA
1 GCACTAGTCGAATAAACCAACAATGTCTTGCGCCCAGCGCTAATCGGATAAACTGACGATGTCAA
32433484 ATATGTGCCCA
66 ATATGTGCCCA
* * * * * * * * *
32433495 GCACTACTCGGATAACCCGACAATATTTTGCACCCAGCGCTAATCGAATAAACTAACGATGTCAA
1 GCACTAGTCGAATAAACCAACAATGTCTTGCGCCCAGCGCTAATCGGATAAACTGACGATGTCAA
*
32433560 ATGTGTGCCCA
66 ATATGTGCCCA
*
32433571 ACACTAGT
1 GCACTAGT
32433579 TGGTTATACT
Statistics
Matches: 188, Mismatches: 48, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
76 188 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (76 bp):
GCACTAGTCGAATAAACCAACAATGTCTTGCGCCCAGCGCTAATCGGATAAACTGACGATGTCAA
ATATGTGCCCA
Found at i:32436007 original size:30 final size:29
Alignment explanation
Indices: 32435973--32436033 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
32435963 CCATAGAGGT
32435973 TTTCCTTTGACAGAGA-TTGCCACAAAGGCA
1 TTTCCTTT--CAGAGATTTGCCACAAAGGCA
*
32436003 TTTCCTTTTAGAGATTTGCCACAAAGGCA
1 TTTCCTTTCAGAGATTTGCCACAAAGGCA
32436032 TT
1 TT
32436034 CTTAAATAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 5 0.17
29 16 0.55
30 8 0.28
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (29 bp):
TTTCCTTTCAGAGATTTGCCACAAAGGCA
Found at i:32436140 original size:61 final size:61
Alignment explanation
Indices: 32436061--32436188 Score: 184
Period size: 61 Copynumber: 2.1 Consensus size: 61
32436051 ACGAAGGTTT
* ** * * *
32436061 TCCTTTACATTCAGTACTCGCCACAAAGGCTTTATTGTCTAGAGTTGTGCCACAAAGGCTA
1 TCCTTTACATTCAATACTCGCCACAAAGGCAATAGTGTCCAGAATTGTGCCACAAAGGCTA
* *
32436122 TCCTTTACATTCAATACTCGCCACAAAGGCAATCGTGTCCAGAATTGTGCCACAAAGGCTT
1 TCCTTTACATTCAATACTCGCCACAAAGGCAATAGTGTCCAGAATTGTGCCACAAAGGCTA
32436183 TCCTTT
1 TCCTTT
32436189 CCAGATTTGT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (61 bp):
TCCTTTACATTCAATACTCGCCACAAAGGCAATAGTGTCCAGAATTGTGCCACAAAGGCTA
Found at i:32436191 original size:29 final size:29
Alignment explanation
Indices: 32436105--32436215 Score: 91
Period size: 29 Copynumber: 3.8 Consensus size: 29
32436095 TTGTCTAGAG
* *
32436105 TTGTGCCACAAAGGCTATCCTTTACATTCAA
1 TTGTGCCACAAAGGCTATCCTTTCCA--GAA
** * * *
32436136 TACTCGCCACAAAGGCAATCGTGTCCAGAA
1 TTGT-GCCACAAAGGCTATCCTTTCCAGAA
* *
32436166 TTGTGCCACAAAGGCTTTCCTTTCCAGAT
1 TTGTGCCACAAAGGCTATCCTTTCCAGAA
*
32436195 TTGTG-C-CAAAGGCTATTCTTT
1 TTGTGCCACAAAGGCTATCCTTT
32436216 ACTAGTGTTT
Statistics
Matches: 63, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
27 13 0.21
28 1 0.02
29 25 0.40
30 4 0.06
31 2 0.03
32 18 0.29
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (29 bp):
TTGTGCCACAAAGGCTATCCTTTCCAGAA
Found at i:32436215 original size:27 final size:29
Alignment explanation
Indices: 32436080--32436202 Score: 86
Period size: 29 Copynumber: 4.1 Consensus size: 29
32436070 TTCAGTACTC
* * *
32436080 GCCACAAAGGCTTT-ATTGTCTAGAGTTGT
1 GCCACAAAGGCTTTCCTT-TCCAGAATTGT
* * * **
32436109 GCCACAAAGGCTATCCTTTACATTCAATACT
1 GCCACAAAGGCTTTCCTTTCCA--GAATTGT
** * *
32436140 CGCCACAAAGGCAATCGTGTCCAGAATTGT
1 -GCCACAAAGGCTTTCCTTTCCAGAATTGT
*
32436170 GCCACAAAGGCTTTCCTTTCCAGATTTGT
1 GCCACAAAGGCTTTCCTTTCCAGAATTGT
32436199 GCCA
1 GCCA
32436203 AAGGCTATTC
Statistics
Matches: 70, Mismatches: 20, Indels: 8
0.71 0.20 0.08
Matches are distributed among these distances:
29 43 0.61
30 6 0.09
31 3 0.04
32 18 0.26
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (29 bp):
GCCACAAAGGCTTTCCTTTCCAGAATTGT
Found at i:32437435 original size:2 final size:2
Alignment explanation
Indices: 32437428--32437453 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32437418 CGCCTTGCTC
32437428 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32437454 CCTTACCAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32437714 original size:16 final size:16
Alignment explanation
Indices: 32437694--32437732 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
32437684 TTCCTTCATT
32437694 AGGTTTTTATCCT-ATA
1 AGGTTTTT-TCCTAATA
*
32437710 TGGTTTTTTCCTAATA
1 AGGTTTTTTCCTAATA
32437726 AGGTTTT
1 AGGTTTT
32437733 AACGAATGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (16 bp):
AGGTTTTTTCCTAATA
Found at i:32439072 original size:184 final size:184
Alignment explanation
Indices: 32438762--32439187 Score: 611
Period size: 184 Copynumber: 2.3 Consensus size: 184
32438752 TTATAATATT
* * *
32438762 AAATAAAATTTTATTATTATTTTGAAAATTAAAAAATAATATTTATATTTTAAAAAACATGTCAC
1 AAATAAAAATTTATTATTATTTTGAAAAATAAAAAATAATAATTATA-TTTAAAAAACATGTCAC
* * *
32438827 TTAGTACATAATTTGTGGCATAAATTACGCTTTTCTATAATATTACAACTTTCAGCTATGTTTAT
65 TTAGTACATAACTTGTGGCACAAATTACGCTTTTCTATAACATTACAACTTTCAGCTATGTTTAT
* * *
32438892 TCATTACAAATCTTTTCTAAAAGCTATGTTTATTTGAATAAATCTATTCAGATGC
130 TCATTACAAATCTTTTCTAAAAGCTACGCTTATTTGAATAAATCTATTCAGATGA
* * * * *
32438947 AAATAAAAATTTATTATTATTTTAAAAAATAAAAAATAAAAATTATGTTTAAAAAATATGTCATT
1 AAATAAAAATTTATTATTATTTTGAAAAATAAAAAATAATAATTATATTTAAAAAACATGTCACT
** * *
32439012 TAGTATGTAACTTGTGGCACAAGTTACGCTTTTTCT-TAACATTATAACTTTCAGCTATGTTTAT
66 TAGTACATAACTTGTGGCACAAATTACGC-TTTTCTATAACATTACAACTTTCAGCTATGTTTAT
* * * *
32439076 TCATTACGAATCTTTTTTTAAAGTTACGCTTATTTGAATAAATCTATTCAGATGA
130 TCATTACAAATCTTTTCTAAAAGCTACGCTTATTTGAATAAATCTATTCAGATGA
* *
32439131 AAATAAAAATTTATTTTTATTTTGAAAAATAAAAAATAATTATTATATTTAAAAAAC
1 AAATAAAAATTTATTATTATTTTGAAAAATAAAAAATAATAATTATATTTAAAAAAC
32439188 TTATTTGCAC
Statistics
Matches: 212, Mismatches: 28, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
184 165 0.78
185 47 0.22
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (184 bp):
AAATAAAAATTTATTATTATTTTGAAAAATAAAAAATAATAATTATATTTAAAAAACATGTCACT
TAGTACATAACTTGTGGCACAAATTACGCTTTTCTATAACATTACAACTTTCAGCTATGTTTATT
CATTACAAATCTTTTCTAAAAGCTACGCTTATTTGAATAAATCTATTCAGATGA
Found at i:32439176 original size:26 final size:27
Alignment explanation
Indices: 32439130--32439186 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
32439120 TATTCAGATG
* * * *
32439130 AAAATAAAAATTTATTTTTAT-TTTGA
1 AAAATAAAAAATAATTATTATATTTAA
32439156 AAAATAAAAAATAATTATTATATTTAA
1 AAAATAAAAAATAATTATTATATTTAA
32439183 AAAA
1 AAAA
32439187 CTTATTTGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (27 bp):
AAAATAAAAAATAATTATTATATTTAA
Found at i:32454226 original size:168 final size:169
Alignment explanation
Indices: 32453936--32454273 Score: 669
Period size: 168 Copynumber: 2.0 Consensus size: 169
32453926 ACCTATTAAT
32453936 TATAATTTATTAAATAAAAATTATCTTAATTAAAATAATATTCTAATAAAAGATGTATTAAAGTA
1 TATAATTTATTAAATAAAAATTATCTTAATTAAAATAATATTCTAATAAAAGATGTATTAAAGTA
32454001 ATAATGCATGCACCTATCTTACGTCTTTTAATTTTATTTGTTTGGTTTCCACTTTCCCCACTTTC
66 ATAATGCATGCACCTATCTTACGTCTTTTAATTTTATTTGTTTGGTTTCCACTTTCCCCACTTTC
32454066 ATATAATTCTCACTTTCTTTATTCTATAGAAACATGATA
131 ATATAATTCTCACTTTCTTTATTCTATAGAAACATGATA
32454105 TATAATTTATT-AATAAAAATTATCTTAATTAAAATAATATTCTAATAAAAGATGTATTAAAGTA
1 TATAATTTATTAAATAAAAATTATCTTAATTAAAATAATATTCTAATAAAAGATGTATTAAAGTA
32454169 ATAATGCATGCACCTATCTTACGTCTTTTAATTTTATTTGTTTGGTTTCCACTTTCCCCACTTTC
66 ATAATGCATGCACCTATCTTACGTCTTTTAATTTTATTTGTTTGGTTTCCACTTTCCCCACTTTC
32454234 ATATAATTCTCACTTTCTTTATTCTATAGAAACATGATA
131 ATATAATTCTCACTTTCTTTATTCTATAGAAACATGATA
32454273 T
1 T
32454274 GAATTTTATT
Statistics
Matches: 169, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
168 158 0.93
169 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (169 bp):
TATAATTTATTAAATAAAAATTATCTTAATTAAAATAATATTCTAATAAAAGATGTATTAAAGTA
ATAATGCATGCACCTATCTTACGTCTTTTAATTTTATTTGTTTGGTTTCCACTTTCCCCACTTTC
ATATAATTCTCACTTTCTTTATTCTATAGAAACATGATA
Found at i:32460793 original size:27 final size:27
Alignment explanation
Indices: 32460741--32460795 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
32460731 AATATATTGG
* *
32460741 TTTTATTTAATATTCAATAATTATATT
1 TTTTATTAAATATTCAATAATAATATT
*
32460768 TTTTATTAAATATTTAA-ACATAATATT
1 TTTTATTAAATATTCAATA-ATAATATT
32460795 T
1 T
32460796 ACATTGTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (27 bp):
TTTTATTAAATATTCAATAATAATATT
Found at i:32463546 original size:2 final size:2
Alignment explanation
Indices: 32463539--32463569 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
32463529 TAAAAGAATG
32463539 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32463570 AAAGCCATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32463570 original size:39 final size:41
Alignment explanation
Indices: 32463487--32463573 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 41
32463477 AGAAAATAAA
*
32463487 ATAAAA-AATGTATAAAATATATAGAGGTATATGTATACTGT
1 ATAAAAGAATGTATAAAATATATAGA-GTATATATATACTGT
* *
32463528 ATAAAAGAATGTATATATATATATATA-TATATATATA-T-T
1 ATAAAAGAATGTATA-AAATATATAGAGTATATATATACTGT
32463567 ATAAAAG
1 ATAAAAG
32463574 CCATGCGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
39 8 0.20
40 1 0.02
41 15 0.37
42 8 0.20
43 9 0.22
ACGTcount: A:0.52, C:0.01, G:0.10, T:0.37
Consensus pattern (41 bp):
ATAAAAGAATGTATAAAATATATAGAGTATATATATACTGT
Found at i:32463897 original size:17 final size:17
Alignment explanation
Indices: 32463864--32463897 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32463854 TCACAAAAAA
*
32463864 AAATAAAAATAAAAAGG
1 AAATAAAAACAAAAAGG
*
32463881 AAATAAAAACAAGAAGG
1 AAATAAAAACAAAAAGG
32463898 GAGCAGATTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.15, T:0.09
Consensus pattern (17 bp):
AAATAAAAACAAAAAGG
Found at i:32466160 original size:133 final size:134
Alignment explanation
Indices: 32465814--32466135 Score: 486
Period size: 133 Copynumber: 2.4 Consensus size: 134
32465804 NNNNNNNNNN
* *
32465814 GCCATCTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCG
1 GCCATCTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGATATCTTCAATCTATTCCA
* * *
32465879 CTGCTGCCCAGGG-AGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAA
66 CTGCTGCCCAGGGAAGATAGAATTACCAGCTTCAATGTACTCCACGGTAACCACAGAGAGGTAAA
*
32465943 ATCC
131 ATAC
* * **
32465947 GCCATCTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATTTGTTATCTTTGATCTATTCCA
1 GCCATCTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGATATCTTCAATCTATTCCA
* *
32466012 CTGCTGCCCAGGGAAG-TAGAATTACCGGCTTCAATGTACTCCACGGTAACCATAGAGAGGTAAA
66 CTGCTGCCCAGGGAAGATAGAATTACCAGCTTCAATGTACTCCACGGTAACCACAGAGAGGTAAA
*
32466076 ATAT
131 ATAC
* * *
32466080 GCCATCTTTGATCTGCTCCACTGTCTATGCAGGAAGGCAAGATCTGCTATCTTCAA
1 GCCATCTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGATATCTTCAA
32466136 CCTGCTCCAC
Statistics
Matches: 169, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
133 167 0.99
134 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (134 bp):
GCCATCTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGATATCTTCAATCTATTCCA
CTGCTGCCCAGGGAAGATAGAATTACCAGCTTCAATGTACTCCACGGTAACCACAGAGAGGTAAA
ATAC
Found at i:32471762 original size:16 final size:17
Alignment explanation
Indices: 32471736--32471779 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
32471726 TATATATATC
*
32471736 TATTATAAAAA-ATGTG
1 TATTTTAAAAACATGTG
32471752 TATTTTGAAAAACATGTG
1 TATTTT-AAAAACATGTG
32471770 TATTTTAAAA
1 TATTTTAAAA
32471780 CGTGCATGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 5 0.20
17 9 0.36
18 11 0.44
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.41
Consensus pattern (17 bp):
TATTTTAAAAACATGTG
Found at i:32473743 original size:28 final size:27
Alignment explanation
Indices: 32473693--32473754 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
32473683 ATGTATACTG
32473693 TATAAAAGAATGCCTATATATATATAT
1 TATAAAAGAATGCCTATATATATATAT
* * * *
32473720 TATAAAAGTCATGCGTATGTATATGTAT
1 TATAAAAG-AATGCCTATATATATATAT
*
32473748 CATAAAA
1 TATAAAA
32473755 AACAATGCCT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.35
Consensus pattern (27 bp):
TATAAAAGAATGCCTATATATATATAT
Found at i:32474053 original size:17 final size:17
Alignment explanation
Indices: 32474020--32474053 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32474010 TCACAAAAAA
*
32474020 AAATAAAAATAAAAAGG
1 AAATAAAAACAAAAAGG
*
32474037 AAATAAAAACAAGAAGG
1 AAATAAAAACAAAAAGG
32474054 GAGCAGATTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.15, T:0.09
Consensus pattern (17 bp):
AAATAAAAACAAAAAGG
Found at i:32476580 original size:3 final size:3
Alignment explanation
Indices: 32476574--32477424 Score: 1702
Period size: 3 Copynumber: 283.7 Consensus size: 3
32476564 CTTCATGTGC
32476574 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32476622 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32476670 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32476718 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32476766 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32476814 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32476862 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32476910 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32476958 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477006 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477054 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477102 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477150 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477198 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477246 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477294 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477342 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32477390 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32477425 CGCTATTACT
Statistics
Matches: 848, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 848 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Done.