Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47432654
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2298022 characters in sequence are not A, C, G, or T
File 97 of 136
Found at i:32478553 original size:31 final size:32
Alignment explanation
Indices: 32478492--32478554 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
32478482 ATTCATTTCG
*
32478492 ACTCTTTTTCAAAAGGTTAATGATCAAATTTA
1 ACTCTTTTTCAAAAGGTTAAGGATCAAATTTA
* * *
32478524 ACTCTTTTT-AAAGGGTTGAGGGTCAAATTTA
1 ACTCTTTTTCAAAAGGTTAAGGATCAAATTTA
32478555 GCTAAAAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (32 bp):
ACTCTTTTTCAAAAGGTTAAGGATCAAATTTA
Found at i:32483429 original size:26 final size:26
Alignment explanation
Indices: 32483400--32483450 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32483390 TTTGAAATGG
*
32483400 AAAAAT-AATATGAATTTTACATTCAT
1 AAAAATGAATA-GAATTTTAAATTCAT
*
32483426 AAAAATGCATAGAATTTTAAATTCA
1 AAAAATGAATAGAATTTTAAATTCA
32483451 AAGTTGACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (26 bp):
AAAAATGAATAGAATTTTAAATTCAT
Found at i:32484916 original size:21 final size:21
Alignment explanation
Indices: 32484900--32484943 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
32484890 AATAATTGAG
32484900 AATATATAATTATTAATTAAA
1 AATATATAATTATTAATTAAA
*
32484921 AATAATATAAATATT-ATTAAA
1 AAT-ATATAATTATTAATTAAA
32484942 AA
1 AA
32484944 ATAATATGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AATATATAATTATTAATTAAA
Found at i:32484928 original size:22 final size:22
Alignment explanation
Indices: 32484903--32484950 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
32484893 AATTGAGAAT
*
32484903 ATATAATTATTAATT-AAAAATA
1 ATATAAATATT-ATTAAAAAATA
32484925 ATATAAATATTATTAAAAAATA
1 ATATAAATATTATTAAAAAATA
32484947 ATAT
1 ATAT
32484951 GGGTGATCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
ATATAAATATTATTAAAAAATA
Found at i:32489416 original size:20 final size:21
Alignment explanation
Indices: 32489391--32489430 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32489381 TCGTTAACTC
32489391 GATTTGACTCG-AAATTTTTT
1 GATTTGACTCGAAAATTTTTT
*
32489411 GATTTGATTCGAAAATTTTT
1 GATTTGACTCGAAAATTTTT
32489431 AAATGAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (21 bp):
GATTTGACTCGAAAATTTTTT
Found at i:32509438 original size:83 final size:85
Alignment explanation
Indices: 32509335--32509503 Score: 315
Period size: 83 Copynumber: 2.0 Consensus size: 85
32509325 CAATACTTTA
*
32509335 TTAATTGACAAAAAACAATTCTATCCTAAATATAATATTATTATATGTATAAATAATTCATATAT
1 TTAATTGACAAAAAAAAATTCTATCCTAAATATAATATTATTATATGTATAAATAATTCATATAT
32509400 TCTTAAAAAAAAAACAGATT
66 TCTTAAAAAAAAAACAGATT
32509420 TTAA-TGA-AAAAAAAAATTCTATCCTAAATATAATATTATTATATGTATAAATAATTCATATAT
1 TTAATTGACAAAAAAAAATTCTATCCTAAATATAATATTATTATATGTATAAATAATTCATATAT
32509483 TCTTAAAAAAAAAACAGATT
66 TCTTAAAAAAAAAACAGATT
32509503 T
1 T
32509504 ATTCATATTC
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
83 76 0.92
84 3 0.04
85 4 0.05
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (85 bp):
TTAATTGACAAAAAAAAATTCTATCCTAAATATAATATTATTATATGTATAAATAATTCATATAT
TCTTAAAAAAAAAACAGATT
Found at i:32517804 original size:2 final size:2
Alignment explanation
Indices: 32517797--32517834 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
32517787 CCCCTCGTTC
*
32517797 CT CT CT CT CT CT CT CT CT CT CT CG CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
32517835 TTGAGCTAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (2 bp):
CT
Found at i:32523595 original size:12 final size:12
Alignment explanation
Indices: 32523563--32523613 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
32523553 TAGCAATTAT
*
32523563 AATTGATTTTTAA
1 AATT-ATTTTAAA
32523576 AA-TATTTTAAA
1 AATTATTTTAAA
32523587 AATTATTTTTAAA
1 AATTA-TTTTAAA
* *
32523600 TATTTTTTTAAA
1 AATTATTTTAAA
32523612 AA
1 AA
32523614 AGCTTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
11 9 0.28
12 11 0.34
13 12 0.38
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (12 bp):
AATTATTTTAAA
Found at i:32523606 original size:11 final size:11
Alignment explanation
Indices: 32523568--32523612 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
32523558 ATTATAATTG
32523568 ATTTTTAAAAT
1 ATTTTTAAAAT
*
32523579 ATTTTAAAAATT
1 ATTTTTAAAA-T
32523591 ATTTTTAAATAT
1 ATTTTTAAA-AT
*
32523603 TTTTTTAAAA
1 ATTTTTAAAA
32523613 AAGCTTTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 10 0.34
12 18 0.62
13 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTTTTAAAAT
Found at i:32529112 original size:9 final size:8
Alignment explanation
Indices: 32529092--32529145 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
32529082 AATGAAAATG
*
32529092 AAAAAAAT
1 AAAAAAAC
32529100 AAAAAAAC
1 AAAAAAAC
32529108 AAAAAAAC
1 AAAAAAAC
*
32529116 AAAAAGAAG
1 AAAAA-AAC
* *
32529125 AAAGAAAG
1 AAAAAAAC
32529133 AAAAAAATC
1 AAAAAAA-C
32529142 AAAA
1 AAAA
32529146 TCAAAATCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
8 29 0.74
9 10 0.26
ACGTcount: A:0.83, C:0.06, G:0.07, T:0.04
Consensus pattern (8 bp):
AAAAAAAC
Found at i:32529120 original size:25 final size:26
Alignment explanation
Indices: 32529092--32529145 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
32529082 AATGAAAATG
*
32529092 AAAAAAATAAAAAAACAAAAAAA-CA
1 AAAAAAAGAAAAAAACAAAAAAATCA
* * *
32529117 AAAAGAAGAAAGAAAGAAAAAAATCA
1 AAAAAAAGAAAAAAACAAAAAAATCA
32529143 AAA
1 AAA
32529146 TCAAAATCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.83, C:0.06, G:0.07, T:0.04
Consensus pattern (26 bp):
AAAAAAAGAAAAAAACAAAAAAATCA
Found at i:32531798 original size:41 final size:44
Alignment explanation
Indices: 32531737--32531838 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 44
32531727 ATCCTATCTT
** *
32531737 CTGAAGTTACAGCAGAGCAGG-T-CACATA-AAGCCTTATCTCC
1 CTGAAGTTACAGTGGAGCAGGTTGAACATACAAGCCTTATCTCC
* * *
32531778 CTGAAGTTACAGTGGGGCAGGTTGAATATACAAGTCTTATCTCC
1 CTGAAGTTACAGTGGAGCAGGTTGAACATACAAGCCTTATCTCC
*
32531822 CTGAGGTTACAGTGGAG
1 CTGAAGTTACAGTGGAG
32531839 TAGACCGAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 18 0.36
42 1 0.02
43 4 0.08
44 27 0.54
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (44 bp):
CTGAAGTTACAGTGGAGCAGGTTGAACATACAAGCCTTATCTCC
Found at i:32531912 original size:19 final size:19
Alignment explanation
Indices: 32531888--32531925 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32531878 AGCGGAGCAG
32531888 ATCGAGGACACTATCCTAT
1 ATCGAGGACACTATCCTAT
32531907 ATCGAGGACACTATCCTAT
1 ATCGAGGACACTATCCTAT
32531926 CTCCCTGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (19 bp):
ATCGAGGACACTATCCTAT
Found at i:32532061 original size:44 final size:44
Alignment explanation
Indices: 32532006--32532192 Score: 139
Period size: 44 Copynumber: 4.2 Consensus size: 44
32531996 CACATAAAGC
*
32532006 CTTATCTCCCTGAAGTTACAGTGGGGCAAGTTGAATATGCAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAAGTTGAATATGCAAGT
* * ** *
32532050 CTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAAT-TTC-AGAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCA-A--GTTGAATATGCAAG-T
* * * **** **
32532096 CTTATCACCCTG-AGATTACAGAGGAGC-AGATCGAAGCCACAAAC
1 CTTATCTCCCTGAAG-TTACAGTGGAGCAAG-TTGAATATGCAAGT
* *
32532140 CTTATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATGCAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAAGTTGAATATGCAAGT
32532184 CTTATCTCC
1 CTTATCTCC
32532193 NNNNNNNNNN
Statistics
Matches: 105, Mismatches: 28, Indels: 20
0.69 0.18 0.13
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 64 0.61
45 8 0.08
46 24 0.23
47 5 0.05
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAAGTTGAATATGCAAGT
Found at i:32532091 original size:237 final size:237
Alignment explanation
Indices: 32531670--32532129 Score: 841
Period size: 237 Copynumber: 1.9 Consensus size: 237
32531660 AGCGGAGCAG
*
32531670 ATCGAAGACACTATCCTATCTCCCTGAAGTTATAGTGGAGTGGATTAAAATAAAGGGATCCTATC
1 ATCGAAGACACTATCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAATAAAGGGATCCTATC
*
32531735 TTCTGAAGTTACAGCAGAGCAGGTCACATAAAGCCTTATCTCCCTGAAGTTACAGTGGGGCAGGT
66 TTCTGAAGTTACAGCAGAGCAGGTCACATAAAGCCTTATCTCCCTGAAGTTACAGTGGGGCAAGT
32531800 TGAATATACAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATC
131 TGAATATACAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATC
* *
32531865 TCCCTGAGATTACAGCGGAGCAGATCGAGGACACTATCCTAT
196 ACCCTGAGATTACAGAGGAGCAGATCGAGGACACTATCCTAT
* *
32531907 ATCGAGGACACTATCCTATCTCCCTGAAGTTATAGTTGAGCGGATTAAAATAAA-GGATCCTATC
1 ATCGAAGACACTATCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAATAAAGGGATCCTATC
32531971 TCTCTGAAGTTACAGCAGAGCAGGTCACATAAAGCCTTATCTCCCTGAAGTTACAGTGGGGCAAG
66 T-TCTGAAGTTACAGCAGAGCAGGTCACATAAAGCCTTATCTCCCTGAAGTTACAGTGGGGCAAG
*
32532036 TTGAATATGCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTAT
130 TTGAATATACAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTAT
32532101 CACCCTGAGATTACAGAGGAGCAGATCGA
195 CACCCTGAGATTACAGAGGAGCAGATCGA
32532130 AGCCACAAAC
Statistics
Matches: 215, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
236 11 0.05
237 204 0.95
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (237 bp):
ATCGAAGACACTATCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAATAAAGGGATCCTATC
TTCTGAAGTTACAGCAGAGCAGGTCACATAAAGCCTTATCTCCCTGAAGTTACAGTGGGGCAAGT
TGAATATACAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATC
ACCCTGAGATTACAGAGGAGCAGATCGAGGACACTATCCTAT
Found at i:32532394 original size:40 final size:40
Alignment explanation
Indices: 32532339--32532910 Score: 542
Period size: 40 Copynumber: 13.7 Consensus size: 40
32532329 NNNTAGATCC
* *
32532339 TATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCT
** * *
32532379 TATCTCCCTAAGCAGTAGTGAAGCAGACAGAAAAAACCAA-TCC
1 TATCTCCCTAAGCAGTAGTG--G-AG-CAGATCAAATCAAGTCT
** * * *
32532422 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCAAATCA-AG-TCT
* *
32532466 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAT-ATGGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCA----AG-TCT
* *
32532510 TATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCT
** * *
32532550 TATCTCCCTAAGCAGTAGTGAAGCAGACAGAAAAAACCAA-TCC
1 TATCTCCCTAAGCAGTAGTG--G-AG-CAGATCAAATCAAGTCT
** * * *
32532593 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCAAATCA-AG-TCT
*
32532637 TATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCT
*
32532677 TATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCT
**
32532717 TATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC-AAATCAA--G-TCT
*
32532760 TATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCT
* **
32532800 TATCTTCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC-AAATCAA--G-TCT
* *
32532843 TATCTCTCTAAGCAGTAGTGGAGCAGATCACATCAAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCT
32532883 TATCTCCCTAAGCAGTAGTGGAGCAGAT
1 TATCTCCCTAAGCAGTAGTGGAGCAGAT
32532911 GAAAGAAACC
Statistics
Matches: 445, Mismatches: 55, Indels: 64
0.79 0.10 0.11
Matches are distributed among these distances:
39 2 0.00
40 185 0.42
41 23 0.05
42 19 0.04
43 119 0.27
44 96 0.22
45 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (40 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCT
Found at i:32532617 original size:171 final size:170
Alignment explanation
Indices: 32532332--32532974 Score: 864
Period size: 171 Copynumber: 3.8 Consensus size: 170
32532322 NNNNNNNNNN
32532332 TAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAG
1 TAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAG
32532397 TGAAGCAGACAGAAA-AAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATA
66 TGAAGCAGACAGAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATA
32532461 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAATATGG
131 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAATA--G
32532503 TAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAG
1 TAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAG
32532568 TGAAGCAGACAGAAA-AAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATA
66 TGAAGCAGACAGAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATA
* *
32532632 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCA-
131 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAT-AG
* *
32532672 -AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 TAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAG
* * * ** * * * *
32532735 TGGAGCAGAC-GAAAGAAACCGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCACATCA-A
66 TGAAGCAGACAGAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATA
* * *
32532796 G-TCTTATCTTCCTAAGCAGTAGTGGAGCA-GACGAA-AG
131 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAATAG
* * * *
32532833 AAACCGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAG
1 -TA--GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAG
* * * * ** * *
32532898 TAGTGGAGCAGA-TGAAAGAAACCAATCCTATCT-CCTGAAGTTACAGCAGAACGGATTAAAAAC
63 TAGTGAAGCAGACAGAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATC
* *
32532961 AAAGATATTATCTC
128 ATAGATCTTATCTC
32532975 TCTGAAGTTG
Statistics
Matches: 425, Mismatches: 34, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
160 1 0.00
162 2 0.00
163 28 0.07
164 2 0.00
165 10 0.02
166 115 0.27
167 90 0.21
168 4 0.01
169 7 0.02
171 165 0.39
172 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (170 bp):
TAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAG
TGAAGCAGACAGAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATA
GATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAATAG
Found at i:32532778 original size:83 final size:83
Alignment explanation
Indices: 32532334--32532932 Score: 728
Period size: 83 Copynumber: 7.1 Consensus size: 83
32532324 NNNNNNNNTA
*
32532334 GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAGTG
1 GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
32532399 AAGCAGACAGAAA-AAACC
66 GAGCAGAC-GAAAGAAACC
* ** * * * *
32532417 AATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATAGATCTTATCTCCCTAAGCAGT
1 GATCCTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCACATCA-AG-TCTTATCTCCCTAAGCAGT
* * **
32532482 AGTGGAGCAGGTCAAATATGGTA--
62 AGTGGAGCA-GACGAA-A-GAAACC
*
32532505 GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAGTG
1 GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
32532570 AAGCAGACAGAAA-AAACC
66 GAGCAGAC-GAAAGAAACC
* ** * * * *
32532588 AATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCATAGATCTTATCTCCCTAAGCAGT
1 GATCCTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCACATCA-AG-TCTTATCTCCCTAAGCAGT
* **
32532653 AGTGGAGCAGATC-ACATCAA--
62 AGTGGAGCAGA-CGAAAGAAACC
*
32532673 G-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
1 GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
32532737 GAGCAGACGAAAGAAACC
66 GAGCAGACGAAAGAAACC
* *
32532755 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTTCCTAAGCAGTAGTG
1 GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
32532820 GAGCAGACGAAAGAAACC
66 GAGCAGACGAAAGAAACC
* *
32532838 GATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
1 GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
32532903 GAGCAGATGAAAGAAACC
66 GAGCAGACGAAAGAAACC
*
32532921 AATCCTATCTCC
1 GATCCTATCTCC
32532933 TGAAGTTACA
Statistics
Matches: 440, Mismatches: 55, Indels: 42
0.82 0.10 0.08
Matches are distributed among these distances:
79 1 0.00
80 34 0.08
81 3 0.01
82 7 0.02
83 212 0.48
84 68 0.15
85 12 0.03
86 11 0.03
87 74 0.17
88 17 0.04
90 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (83 bp):
GATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACGAAAGAAACC
Found at i:32535357 original size:111 final size:110
Alignment explanation
Indices: 32535184--32535387 Score: 320
Period size: 111 Copynumber: 1.8 Consensus size: 110
32535174 AGGTTTTTCT
*
32535184 AAATAAGGCAATAATTAGCGTTTGGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTTTCGAT
1 AAATAAGGCAATAATTAGCGTTTGGGAAATTCGAGAAAACATGCCCTAACGTGCTGGGTTTCGA-
32535249 TTTTCTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAATTTTTTA
65 -TTTCTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAATTTTTTA
** * * *
32535296 AAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAGAACGTGCCCTAACGTGCTGGGTTTCGAT
1 AAATAAGGCAATAATTAGCGTTTGGGAAATTCGAGAAAACATGCCCTAACGTGCTGGGTTTCGAT
*
32535360 TTCTCGTTCGACCAAATAGCTAAATATC
66 TTCTCGTTCAACCAAATAGCTAAATATC
32535388 TTCTTAACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
109 28 0.33
111 37 0.44
112 20 0.24
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (110 bp):
AAATAAGGCAATAATTAGCGTTTGGGAAATTCGAGAAAACATGCCCTAACGTGCTGGGTTTCGAT
TTCTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAATTTTTTA
Found at i:32538164 original size:12 final size:13
Alignment explanation
Indices: 32538147--32538177 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
32538137 TCAATCTTTC
32538147 TATTTTTA-TTTT
1 TATTTTTATTTTT
32538159 TATTTTTATTTTT
1 TATTTTTATTTTT
32538172 TATTTT
1 TATTTT
32538178 GTAAACGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:32538165 original size:7 final size:6
Alignment explanation
Indices: 32538147--32538177 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
32538137 TCAATCTTTC
32538147 TATTTT TATTTT TATTTT TATTTTT TATTTT
1 TATTTT TATTTT TATTTT TA-TTTT TATTTT
32538178 GTAAACGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:32539106 original size:30 final size:30
Alignment explanation
Indices: 32539065--32539121 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
32539055 TAATTCCAAG
* * *
32539065 TTTTATTATATATGTATATATATACATATC
1 TTTTATAATATATATATATAAATACATATC
32539095 TTTTATAATATATATATATAAATACAT
1 TTTTATAATATATATATATAAATACAT
32539122 GCACATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (30 bp):
TTTTATAATATATATATATAAATACATATC
Found at i:32547342 original size:44 final size:43
Alignment explanation
Indices: 32547288--32547541 Score: 158
Period size: 44 Copynumber: 5.7 Consensus size: 43
32547278 TGGATCTCAT
*
32547288 CAGGTCTTATCTCCCTGAAGTTGCAACGGAGCAGACTGAGTAAG-
1 CAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGA-TGAG-AAGA
* * *
32547332 CAGGTCTTATCCCCCTGAAGTTGCAGTGG-GACAGATCGAAGATGA
1 CAGGTCTTATCTCCCTGAAGTTGCAGCGGAG-CAGAT-G-AGAAGA
** * * *
32547377 CAAATCTTATCTCCCTGAAGTTACAGTC-GAGCAGAT-TGAAGC
1 CAGGTCTTATCTCCCTGAAGTTGCAG-CGGAGCAGATGAGAAGA
** * * *
32547419 CGATAATCCTATCTCCTTGAAGTTGCAGCAGAGCAGACTGAGTAAG-
1 C-A-GGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGA-TGAG-AAGA
* * * * *
32547465 CAGGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGATCGAAGATGA
1 CAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGAT-G-AGAAGA
** * *
32547510 CAAATCTTATCTCCCTGAAGTTACAGTGGAGC
1 CAGGTCTTATCTCCCTGAAGTTGCAGCGGAGC
32547542 GGATTGAAGC
Statistics
Matches: 163, Mismatches: 32, Indels: 29
0.73 0.14 0.13
Matches are distributed among these distances:
42 4 0.02
43 5 0.03
44 88 0.54
45 60 0.37
46 3 0.02
47 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (43 bp):
CAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGATGAGAAGA
Found at i:32547394 original size:45 final size:46
Alignment explanation
Indices: 32547336--32547852 Score: 192
Period size: 44 Copynumber: 11.8 Consensus size: 46
32547326 AGTAAGCAGG
*
32547336 TCTTATCCCCCTGAAGTTGCAGTGGGA-CAGATCGAAGATGACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGATGACAAA
* * * ** *
32547381 TCTTATCTCCCTGAAGTTACAGT-CGAGCAGATTGAAGCCGA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGATGACAAA
* * ** * **
32547425 TCCTATCTCCTTGAAGTTGCAG-CAGAGCAGA-CTG-AG-TAAGCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATC-GAAGATGA-CAAA
* *
32547469 TCTTATCCCCCTAAAGTTGCAGTGGG-GCAGATCGAAGATGACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGATGACAAA
* * * ** **
32547514 TCTTATCTCCCTGAAGTTACAGT-GGAGCGGATTGAAG-CCATTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGATGACAAA
* * * * ** * * *
32547558 TCCTATCTCCCTGAAATTACAGT-GGAGCGGATTAAAG-TAATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGATGACAAA
* * ** * **
32547602 TCTTATCTCTCTGAAGTTGCAGT-AGAGTGGATCG--CAT--CAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGATGACAAA
** * ** *
32547643 TCTTATCTCTATGAGGTTGCAGT-GGAGCAGA-CTG-AGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATC-GAAGATGACAAA
* * ** *
32547687 TCTTATCCCCCTAAAGTCACAGTGGG-GCAGA-CTGAAGAAG-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATC-GAAGATGACAAA
* * * * *
32547731 TCCTATCTCCCTCAGGTTGCAGT-GGAGCAGATTGAAG-TCGA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGAT-GACAAA
* * * * ** * * *
32547775 TCCTATCTCCTTGAAGTTGTAGT-GGAGCGGATTAAAG-TAATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGATGACAAA
* *
32547819 TCTTATCTCTCTGAAGTTGCAGT-AGAGCAGATCG
1 TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCG
32547853 CATCAAGCCT
Statistics
Matches: 354, Mismatches: 96, Indels: 45
0.72 0.19 0.09
Matches are distributed among these distances:
40 1 0.00
41 29 0.08
42 2 0.01
43 6 0.02
44 241 0.68
45 73 0.21
46 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (46 bp):
TCTTATCTCCCTGAAGTTGCAGTGGGAGCAGATCGAAGATGACAAA
Found at i:32547455 original size:133 final size:133
Alignment explanation
Indices: 32547295--32547572 Score: 477
Period size: 133 Copynumber: 2.1 Consensus size: 133
32547285 CATCAGGTCT
* *
32547295 TATCTCCCTGAAGTTGCAACGGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAACAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTG
32547360 GGACAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTCGAGCAGATTGAAGCCGA-TA
66 GGACAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTCGAGCAGATTGAAGCC-ATTA
32547424 ATCC
130 ATCC
* *
32547428 TATCTCCTTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAACAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTG
* * *
32547493 GGGCAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTGGAGCGGATTGAAGCCATTAA
66 GGACAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTCGAGCAGATTGAAGCCATTAA
32547558 TCC
131 TCC
32547561 TATCTCCCTGAA
1 TATCTCCCTGAA
32547573 ATTACAGTGG
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
132 1 0.01
133 135 0.99
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (133 bp):
TATCTCCCTGAAGTTGCAACAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTG
GGACAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTCGAGCAGATTGAAGCCATTAA
TCC
Found at i:32547606 original size:133 final size:133
Alignment explanation
Indices: 32547295--32547624 Score: 430
Period size: 133 Copynumber: 2.5 Consensus size: 133
32547285 CATCAGGTCT
* * * * * *
32547295 TATCTCCCTGAAGTTGCAACGGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTG
1 TATCTCCCTGAAATTACAGCAGAGCAGACTAAGTAAGCAGATCTTATCCCCCTGAAGTTGCAGTG
32547360 GGACAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTCGAGCAGATTGAAGCCGATAA
66 GGACAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTCGAGCAGATTGAAGCCGATAA
32547425 TCC
131 TCC
* * * * * *
32547428 TATCTCCTTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTG
1 TATCTCCCTGAAATTACAGCAGAGCAGACTAAGTAAGCAGATCTTATCCCCCTGAAGTTGCAGTG
* * *
32547493 GGGCAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTGGAGCGGATTGAAGCC-ATTA
66 GGACAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTCGAGCAGATTGAAGCCGA-TA
32547557 ATCC
130 ATCC
** * * * * *
32547561 TATCTCCCTGAAATTACAGTGGAGCGGATTAAAGTAA-TAGATCTTATCTCTCTGAAGTTGCAGT
1 TATCTCCCTGAAATTACAGCAGAGCAGACT-AAGTAAGCAGATCTTATCCCCCTGAAGTTGCAGT
32547625 AGAGTGGATC
Statistics
Matches: 175, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
132 1 0.01
133 169 0.97
134 5 0.03
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (133 bp):
TATCTCCCTGAAATTACAGCAGAGCAGACTAAGTAAGCAGATCTTATCCCCCTGAAGTTGCAGTG
GGACAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTCGAGCAGATTGAAGCCGATAA
TCC
Found at i:32547804 original size:217 final size:218
Alignment explanation
Indices: 32547440--32547857 Score: 617
Period size: 217 Copynumber: 1.9 Consensus size: 218
32547430 TCTCCTTGAA
* * * **
32547440 GTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGATCGAA
1 GTTGCAGCAGAGCAGACTGAGAAAACAAGTCTTATCCCCCTAAAGTCACAGTGGGGCAGATCGAA
* * * *
32547505 GATGACAAATCTTATCTCCCTGAAGTTACAGTGGAGCGGATTGAAGCCATTAATCCTATCTCCCT
66 GAAGACAAATCCTATCTCCCTCAAGTTACAGTGGAGCAGATTGAAGCCATTAATCCTATCTCCCT
**
32547570 GAAATTACAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATC
131 GAAATTACAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC
32547635 GCATCAGGTCTTATCTCTATGAG
196 GCATCAGGTCTTATCTCTATGAG
**
32547658 GTTGCAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTAAAGTCACAGTGGGGCAGA-CTGA
1 GTTGCAGCAGAGCAGACTGAGAAAACAAGTCTTATCCCCCTAAAGTCACAGTGGGGCAGATC-GA
* * *
32547722 AGAAG-CAAATCCTATCTCCCTCAGGTTGCAGTGGAGCAGATTGAAGTCGA-TAATCCTATCTCC
65 AGAAGACAAATCCTATCTCCCTCAAGTTACAGTGGAGCAGATTGAAG-CCATTAATCCTATCTCC
* * **
32547785 TTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
129 CTGAAATTACAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
32547850 TCGCATCA
194 TCGCATCA
32547858 AGCCTTGCCG
Statistics
Matches: 178, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
217 117 0.66
218 61 0.34
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (218 bp):
GTTGCAGCAGAGCAGACTGAGAAAACAAGTCTTATCCCCCTAAAGTCACAGTGGGGCAGATCGAA
GAAGACAAATCCTATCTCCCTCAAGTTACAGTGGAGCAGATTGAAGCCATTAATCCTATCTCCCT
GAAATTACAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC
GCATCAGGTCTTATCTCTATGAG
Found at i:32553510 original size:3 final size:3
Alignment explanation
Indices: 32553496--32553529 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
32553486 TGTATATTCC
*
32553496 ATT ATA ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
32553530 GTCTTTAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:32558756 original size:14 final size:14
Alignment explanation
Indices: 32558737--32558763 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32558727 TGAATGTACC
32558737 ATTTTTGGTACATA
1 ATTTTTGGTACATA
32558751 ATTTTTGGTACAT
1 ATTTTTGGTACAT
32558764 GCCATTTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (14 bp):
ATTTTTGGTACATA
Found at i:32559693 original size:15 final size:16
Alignment explanation
Indices: 32559662--32559695 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32559652 TAATATTAAT
32559662 AAACTAAAAAAATTGA
1 AAACTAAAAAAATTGA
*
32559678 AAACTCAAAAAA-TGA
1 AAACTAAAAAAATTGA
32559693 AAA
1 AAA
32559696 AACTCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.71, C:0.09, G:0.06, T:0.15
Consensus pattern (16 bp):
AAACTAAAAAAATTGA
Found at i:32560687 original size:4 final size:4
Alignment explanation
Indices: 32560678--32560770 Score: 161
Period size: 4 Copynumber: 23.5 Consensus size: 4
32560668 CCCAAGAGAA
*
32560678 TATG TATG TACG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
32560726 TATG TATG TATG TATG TATG TATG TATG TATG TACG TA-G TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
32560771 CGCTAGAGGT
Statistics
Matches: 85, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
3 3 0.04
4 82 0.96
ACGTcount: A:0.26, C:0.02, G:0.25, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:32560827 original size:12 final size:12
Alignment explanation
Indices: 32560810--32560858 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
32560800 AGCACCTCTA
*
32560810 ATGTACGCATGT
1 ATGTACGTATGT
32560822 ATGTACGTATGT
1 ATGTACGTATGT
* *
32560834 ACGTATGTATGT
1 ATGTACGTATGT
*
32560846 ATGTATGTATGT
1 ATGTACGTATGT
32560858 A
1 A
32560859 NNNNNNNNNN
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (12 bp):
ATGTACGTATGT
Found at i:32560843 original size:4 final size:4
Alignment explanation
Indices: 32560818--32560858 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
32560808 TAATGTACGC
* *
32560818 ATGT ATGT ACGT ATGT ACGT ATGT ATGT ATGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
32560859 NNNNNNNNNN
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.27, C:0.05, G:0.24, T:0.44
Consensus pattern (4 bp):
ATGT
Found at i:32560896 original size:4 final size:4
Alignment explanation
Indices: 32560887--32560964 Score: 156
Period size: 4 Copynumber: 19.5 Consensus size: 4
32560877 NNNNNNNNTG
32560887 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
32560935 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
32560965 CGGAAAAACC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 74 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:32563647 original size:18 final size:18
Alignment explanation
Indices: 32563626--32563681 Score: 78
Period size: 18 Copynumber: 3.1 Consensus size: 18
32563616 GTCTATTTTC
*
32563626 TTTTCTTTTATTATTATT
1 TTTTCTTTTATTTTTATT
*
32563644 TTTTCTTTTATTTTTA-A
1 TTTTCTTTTATTTTTATT
32563661 TTTTCTGTTTATTTTTATT
1 TTTTCT-TTTATTTTTATT
32563680 TT
1 TT
32563682 CTTAGACTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.18
18 25 0.76
19 2 0.06
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTCTTTTATTTTTATT
Found at i:32563663 original size:7 final size:6
Alignment explanation
Indices: 32563631--32563681 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
32563621 TTTTCTTTTC
* * * *
32563631 TTTTAT TATTAT TTTT-T CTTTTAT TTTTAA TTTTCT GTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
32563679 TTT
1 TTT
32563682 CTTAGACTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
5 1 0.03
6 33 0.94
7 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:32568725 original size:27 final size:27
Alignment explanation
Indices: 32568683--32568959 Score: 299
Period size: 27 Copynumber: 10.2 Consensus size: 27
32568673 AGAGGTTAAT
* * *
32568683 AAATGATCGAACTACCCCCATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * *
32568710 AAATGACCAAATTACCCCCAGAAGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
32568737 AAATAACCGAATTACCCCCACATGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * *
32568764 AAATGATCGAATTACTCCCACAGGATA
1 AAATGACCGAATTACCCCCACAGGGTA
32568791 AAATGACCGAATTACCCTCCACAGGGT-
1 AAATGACCGAATTACCC-CCACAGGGTA
* *
32568818 AAATGACAGAATTACCCTCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
32568845 AAATAACCGAATTATCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * *
32568872 AAATAACCAAATTACCCCTACAGGCTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
32568899 AAAT-AGCTGAATTACCCCTCATAGGGTA
1 AAATGA-CCGAATTACCCC-CACAGGGTA
*
32568927 AAATGACCGAATTACCCCCA-TGGGATA
1 AAATGACCGAATTACCCCCACAGGG-TA
32568954 AAATGA
1 AAATGA
32568960 ACAAAATACC
Statistics
Matches: 210, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 12 0.06
27 168 0.80
28 29 0.14
29 1 0.00
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATGACCGAATTACCCCCACAGGGTA
Found at i:32569441 original size:15 final size:16
Alignment explanation
Indices: 32569418--32569473 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
32569408 TTTTTATGTT
32569418 TTATATATATTATTTTA
1 TTATATATA-TATTTTA
*
32569435 TTATATAATATATTGTA
1 TTATAT-ATATATTTTA
* * *
32569452 TTGTAT-TGTATTATA
1 TTATATATATATTTTA
32569467 TTATATA
1 TTATATA
32569474 AGTAAAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 12 0.38
17 17 0.53
18 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (16 bp):
TTATATATATATTTTA
Found at i:32569453 original size:22 final size:22
Alignment explanation
Indices: 32569420--32569472 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
32569410 TTTATGTTTT
*
32569420 ATATATATTATTTTATTATATA
1 ATATATATTATTGTATTATATA
* *
32569442 ATATAT-TGTATTGTATTGTATT
1 ATATATAT-TATTGTATTATATA
32569464 ATATTATAT
1 ATA-TATAT
32569473 AAGTAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 20 0.80
23 3 0.12
24 1 0.04
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (22 bp):
ATATATATTATTGTATTATATA
Found at i:32570160 original size:16 final size:16
Alignment explanation
Indices: 32570141--32570187 Score: 76
Period size: 16 Copynumber: 2.8 Consensus size: 16
32570131 TATCTATTTA
32570141 TTATTATTTAATTGGT
1 TTATTATTTAATTGGT
32570157 TTATTATTTAATTGGT
1 TTATTATTTAATTGGT
32570173 TTATTTATATTAATT
1 TTA-TTAT-TTAATT
32570188 AAAATTCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 19 0.66
17 4 0.14
18 6 0.21
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.64
Consensus pattern (16 bp):
TTATTATTTAATTGGT
Found at i:32570452 original size:21 final size:20
Alignment explanation
Indices: 32570422--32570510 Score: 70
Period size: 21 Copynumber: 4.2 Consensus size: 20
32570412 GAGTTACTAT
*
32570422 TTTAAGGTTTATAGATTATGG
1 TTTAA-GTTTATAGATTAAGG
* *
32570443 TTTATAGTTTATGCGTTTAAGG
1 TTTA-AGTTTAT-AGATTAAGG
* * * *
32570465 TTTAAGGGTTATGGTTTATGG
1 TTTAA-GTTTATAGATTAAGG
32570486 TTTAAGATTTATAGATTAAGG
1 TTTAAG-TTTATAGATTAAGG
32570507 TTTA
1 TTTA
32570511 GGGGTTAGGG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
20 1 0.02
21 37 0.69
22 16 0.30
ACGTcount: A:0.27, C:0.01, G:0.24, T:0.48
Consensus pattern (20 bp):
TTTAAGTTTATAGATTAAGG
Found at i:32570474 original size:8 final size:7
Alignment explanation
Indices: 32570422--32570623 Score: 54
Period size: 7 Copynumber: 28.6 Consensus size: 7
32570412 GAGTTACTAT
32570422 TTTAAGG
1 TTTAAGG
32570429 TTTATA-G
1 TTTA-AGG
* *
32570436 ATTATGG
1 TTTAAGG
32570443 TTTATA-G
1 TTTA-AGG
*
32570450 TTTATGCG
1 TTTAAG-G
32570458 TTTAAGG
1 TTTAAGG
32570465 TTTAAGG
1 TTTAAGG
* *
32570472 GTTATGG
1 TTTAAGG
*
32570479 TTTATGG
1 TTTAAGG
*
32570486 TTTAAGA
1 TTTAAGG
32570493 TTTATA-G
1 TTTA-AGG
*
32570500 ATTAAGG
1 TTTAAGG
*
32570507 TTTAGGG
1 TTTAAGG
* *
32570514 GTTAGGG
1 TTTAAGG
*
32570521 GTT-AGG
1 TTTAAGG
* *
32570527 AGTTGAGG
1 -TTTAAGG
*
32570535 GTTAAGAG
1 TTTAAG-G
32570543 -TTAAGG
1 TTTAAGG
* *
32570549 GTTATGG
1 TTTAAGG
*
32570556 TTTATGG
1 TTTAAGG
*
32570563 TTTATGG
1 TTTAAGG
32570570 TTTAAGG
1 TTTAAGG
* **
32570577 GTTGGGG
1 TTTAAGG
*
32570584 TTTAATG
1 TTTAAGG
*
32570591 TTTAGGG
1 TTTAAGG
* *
32570598 GTTAGGG
1 TTTAAGG
* *
32570605 GTTAGGGG
1 TTTA-AGG
32570613 TTTAAGG
1 TTTAAGG
32570620 TTTA
1 TTTA
32570624 TGTTTTATGA
Statistics
Matches: 150, Mismatches: 33, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
6 4 0.03
7 128 0.85
8 18 0.12
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (7 bp):
TTTAAGG
Found at i:32570482 original size:14 final size:14
Alignment explanation
Indices: 32570437--32570630 Score: 88
Period size: 14 Copynumber: 13.7 Consensus size: 14
32570427 GGTTTATAGA
32570437 TTATGGTTTATA-GT
1 TTATGGTTTA-AGGT
32570451 TTATGCGTTTAAGGT
1 TTATG-GTTTAAGGT
* * *
32570466 TTAAGGGTTATGGT
1 TTATGGTTTAAGGT
*
32570480 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
32570494 TTATAGATTAAGGT
1 TTATGGTTTAAGGT
* * * *
32570508 TTAGGGGTTAGGGG
1 TTATGGTTTAAGGT
* * *
32570522 TTA-GGAGTTGAGGG
1 TTATGG-TTTAAGGT
* *
32570536 TTAAGAG-TTAAGGG
1 TTATG-GTTTAAGGT
*
32570550 TTATGGTTTATGGT
1 TTATGGTTTAAGGT
*
32570564 TTATGGTTTAAGGG
1 TTATGGTTTAAGGT
** *
32570578 TTGGGGTTTAATGT
1 TTATGGTTTAAGGT
* * * *
32570592 TTAGGGGTTAGGGG
1 TTATGGTTTAAGGT
*
32570606 TTAGGGGTTTAAGGT
1 TTA-TGGTTTAAGGT
*
32570621 TTATGTTTTA
1 TTATGGTTTA
32570631 TGATTCAATG
Statistics
Matches: 136, Mismatches: 37, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
13 3 0.02
14 109 0.80
15 23 0.17
16 1 0.01
ACGTcount: A:0.22, C:0.01, G:0.35, T:0.43
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:32570585 original size:21 final size:22
Alignment explanation
Indices: 32570561--32570607 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
32570551 TATGGTTTAT
32570561 GGTTT-ATGGTTTAAGGGTT-GG
1 GGTTTAAT-GTTTAAGGGTTAGG
*
32570582 GGTTTAATGTTTAGGGGTTAGG
1 GGTTTAATGTTTAAGGGTTAGG
32570604 GGTT
1 GGTT
32570608 AGGGGTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.15, C:0.00, G:0.43, T:0.43
Consensus pattern (22 bp):
GGTTTAATGTTTAAGGGTTAGG
Found at i:32581584 original size:3 final size:3
Alignment explanation
Indices: 32581576--32581619 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
32581566 AATAAGAATT
* * *
32581576 TTA TTA TTA TTA TTA TTA TTG TTA ATA TAA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32581620 TTTAATGATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:32583302 original size:28 final size:27
Alignment explanation
Indices: 32583269--32583323 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 27
32583259 TATTACTGAA
*
32583269 ATTGGGCTAAGGCCCACATTGTTACTGT
1 ATTGGGCTAAGGCCCACACTG-TACTGT
32583297 ATTGGGCTAAGGCCCACACTGTACTGT
1 ATTGGGCTAAGGCCCACACTGTACTGT
32583324 TACTGAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (27 bp):
ATTGGGCTAAGGCCCACACTGTACTGT
Found at i:32583343 original size:33 final size:33
Alignment explanation
Indices: 32583225--32583355 Score: 105
Period size: 33 Copynumber: 4.1 Consensus size: 33
32583215 TGACTGATAT
*
32583225 CTGTTACT-ATTATGGGCCAAGGCCC-CACTGATA
1 CTGTTACTGAATA-GGGCCAAGGCCCACACTG-TA
* * *
32583258 CTATTACTGAAATTGGGCTAAGGCCCACA---T-
1 CTGTTACTG-AATAGGGCCAAGGCCCACACTGTA
* * *
32583288 -TGTTACTGTATTGGGCTAAGGCCCACACTGTA
1 CTGTTACTGAATAGGGCCAAGGCCCACACTGTA
* *
32583320 CTGTTACTGAATAGGGCCCAGGCCCAGACTGTA
1 CTGTTACTGAATAGGGCCAAGGCCCACACTGTA
32583353 CTG
1 CTG
32583356 CTTGTTGTAT
Statistics
Matches: 79, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
28 18 0.23
29 7 0.09
31 2 0.03
33 37 0.47
34 11 0.14
35 4 0.05
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (33 bp):
CTGTTACTGAATAGGGCCAAGGCCCACACTGTA
Found at i:32585558 original size:43 final size:44
Alignment explanation
Indices: 32585511--32585636 Score: 136
Period size: 42 Copynumber: 2.9 Consensus size: 44
32585501 TCTAAGATGT
32585511 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGACAG
* * * * * *
32585554 GGTCTTACAAGAAATCATATA-CGATGCCGA-TATCCCAGACAT
1 GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGACAG
*
32585596 GGTCTTACATGTAAATCTCAA-ATCGATGCCAAC-GTCCCAGA
1 GGTCTTACATGT-AATC-AAATATCGATGCCAACTGTCCCAGA
32585637 TATGGTCTCA
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
42 27 0.40
43 24 0.36
44 16 0.24
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (44 bp):
GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGACAG
Found at i:32594607 original size:25 final size:26
Alignment explanation
Indices: 32594568--32594620 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
32594558 ACATGATGAA
*
32594568 AAAAAAGAAACTCAGGTACCTAGTTG
1 AAAAAAGAAACTCAGGTACCAAGTTG
*
32594594 AAAAAA-AAATTCAGGTACCAAGTTG
1 AAAAAAGAAACTCAGGTACCAAGTTG
32594619 AA
1 AA
32594621 CATTGAAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (26 bp):
AAAAAAGAAACTCAGGTACCAAGTTG
Found at i:32597312 original size:13 final size:13
Alignment explanation
Indices: 32597294--32597318 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32597284 TAATTTAATA
32597294 TTATTTTGTGTGT
1 TTATTTTGTGTGT
32597307 TTATTTTGTGTG
1 TTATTTTGTGTG
32597319 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:32598408 original size:114 final size:114
Alignment explanation
Indices: 32598208--32598431 Score: 448
Period size: 114 Copynumber: 2.0 Consensus size: 114
32598198 NNNNNNNNNC
32598208 ATAAATGAAGTTCGAATATGTATATATATATGTTTATCTATTGTATATTTGATGAGTTATAATTA
1 ATAAATGAAGTTCGAATATGTATATATATATGTTTATCTATTGTATATTTGATGAGTTATAATTA
32598273 AAAGTATATGAATTGAAATTAGTTAAGTATGAATGTTATATATATACAT
66 AAAGTATATGAATTGAAATTAGTTAAGTATGAATGTTATATATATACAT
32598322 ATAAATGAAGTTCGAATATGTATATATATATGTTTATCTATTGTATATTTGATGAGTTATAATTA
1 ATAAATGAAGTTCGAATATGTATATATATATGTTTATCTATTGTATATTTGATGAGTTATAATTA
32598387 AAAGTATATGAATTGAAATTAGTTAAGTATGAATGTTATATATAT
66 AAAGTATATGAATTGAAATTAGTTAAGTATGAATGTTATATATAT
32598432 GCACATGTGT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.43
Consensus pattern (114 bp):
ATAAATGAAGTTCGAATATGTATATATATATGTTTATCTATTGTATATTTGATGAGTTATAATTA
AAAGTATATGAATTGAAATTAGTTAAGTATGAATGTTATATATATACAT
Found at i:32598551 original size:6 final size:6
Alignment explanation
Indices: 32598540--32598569 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
32598530 GAATAGATAT
32598540 AAATAC AAATAC AAATAC AAATAC AAATAC
1 AAATAC AAATAC AAATAC AAATAC AAATAC
32598570 TTGAGTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAC
Found at i:32598834 original size:41 final size:41
Alignment explanation
Indices: 32598784--32598933 Score: 210
Period size: 41 Copynumber: 3.7 Consensus size: 41
32598774 ATTCGAACTT
*
32598784 TAAGTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
1 TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
*
32598825 TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGTTA
1 TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
* * * *
32598866 TAAACCTAGCAGGCTAAGTGTCGGTGATATGAATCAGGCTA
1 TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
* * * *
32598907 TAAGCTTAGCAAGCTAAATGCCAGTGA
1 TAAGCCTAGCAGGCTAAGTGCCGGTGA
32598934 ATATGTTAAA
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 96 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (41 bp):
TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
Found at i:32604311 original size:17 final size:17
Alignment explanation
Indices: 32604289--32604322 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32604279 CACACGGTCA
32604289 TGTCAC-CAGCCCGTGTG
1 TGTCACACAG-CCGTGTG
32604306 TGTCACACAGCCGTGTG
1 TGTCACACAGCCGTGTG
32604323 CCAGCTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.15, C:0.32, G:0.29, T:0.24
Consensus pattern (17 bp):
TGTCACACAGCCGTGTG
Found at i:32608068 original size:24 final size:24
Alignment explanation
Indices: 32608031--32608085 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
32608021 CCATCTAATG
*
32608031 GGAAGCTCATGTGAGTCAATATCA
1 GGAAGCTCAAGTGAGTCAATATCA
* *
32608055 GGAAGTTCAAGTGAGTCAATATCG
1 GGAAGCTCAAGTGAGTCAATATCA
32608079 GGAAGCT
1 GGAAGCT
32608086 TCGGAGAGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.24
Consensus pattern (24 bp):
GGAAGCTCAAGTGAGTCAATATCA
Found at i:32608169 original size:25 final size:25
Alignment explanation
Indices: 32607993--32608162 Score: 82
Period size: 25 Copynumber: 6.9 Consensus size: 25
32607983 ATGTTCATAT
* **
32607993 GAGCACATA-AACGGGAAGCTCTGTC
1 GAGC-CATATAACGGGAAGCTCAGGA
* * * *
32608018 GAGCCATCTAATGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCAGGA
* * * * * *
32608043 GAGTCA-ATATCAGGAAGTTCAAGT
1 GAGCCATATAACGGGAAGCTCAGGA
* *
32608067 GAGTCA-ATATCGGGAAGCTTC-GGA
1 GAGCCATATAACGGGAAGC-TCAGGA
* *
32608091 GAGCCAT-TAATCGAGAAGCTC-GCAA
1 GAGCCATATAA-CGGGAAGCTCAG-GA
*
32608116 GAACCATATAACGGGAAGCTCAGGA
1 GAGCCATATAACGGGAAGCTCAGGA
* *
32608141 GAGCCATATATCGGGATGCTCA
1 GAGCCATATAACGGGAAGCTCA
32608163 TACGAGCTGC
Statistics
Matches: 111, Mismatches: 27, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
24 42 0.38
25 65 0.59
26 4 0.04
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCAGGA
Found at i:32610436 original size:17 final size:16
Alignment explanation
Indices: 32610400--32610438 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32610390 GAATGCAAGC
*
32610400 TATTCTTAAATAGAGT
1 TATTCTTAAAAAGAGT
*
32610416 TATTCTTAAACAAGGGT
1 TATTCTTAAA-AAGAGT
32610433 TATTCT
1 TATTCT
32610439 GACATGTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (16 bp):
TATTCTTAAAAAGAGT
Found at i:32611549 original size:22 final size:22
Alignment explanation
Indices: 32611524--32611567 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32611514 CAATAGCTTA
32611524 AATAATAACTTTT-AAATAATTC
1 AATAA-AACTTTTGAAATAATTC
32611546 AATAAAACTTTTGAAATAATTC
1 AATAAAACTTTTGAAATAATTC
32611568 GGTGACCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39
Consensus pattern (22 bp):
AATAAAACTTTTGAAATAATTC
Found at i:32623682 original size:21 final size:20
Alignment explanation
Indices: 32623658--32623711 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
32623648 ATAAATAAAT
32623658 ATAATAATAATATAACACACA
1 ATAATAATAATA-AACACACA
* *
32623679 ATAATAAACTAATAACCATACA
1 ATAAT-AA-TAATAAACACACA
*
32623701 GTAATAATAAT
1 ATAATAATAAT
32623712 GTAAATAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 7 0.25
22 12 0.43
23 5 0.18
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.26
Consensus pattern (20 bp):
ATAATAATAATAAACACACA
Found at i:32625248 original size:14 final size:14
Alignment explanation
Indices: 32625229--32625259 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32625219 GTTTATTCCC
32625229 AAATTGTAGAGTAT
1 AAATTGTAGAGTAT
32625243 AAATTGTAGAGTAT
1 AAATTGTAGAGTAT
32625257 AAA
1 AAA
32625260 GTCAATATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (14 bp):
AAATTGTAGAGTAT
Found at i:32630542 original size:4 final size:4
Alignment explanation
Indices: 32630528--32630559 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
32630518 CTTTTTATGC
32630528 TTTA GTTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTT
32630560 GCTATGGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:32631004 original size:110 final size:110
Alignment explanation
Indices: 32630694--32631214 Score: 647
Period size: 110 Copynumber: 4.8 Consensus size: 110
32630684 TCTAATTGAT
* *
32630694 GCAATATTTAGCGTTTGGAAATTCGAGA-AACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCG
1 GCAATGTTTTGCGTTTGGAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCG
* * * *
32630758 TTCAACCAAACGGCTTAATATCTTTTTCAAAAA-CTTCAAAATAAG
66 TTCAACCAAATGGCTTAATATCCTTTTCAAAAATC-TCGAAATATG
* * *
32630803 GTAATGTTCTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGT-TGCGA--TTTCTC
1 GCAATGTTTTGCGTTTGGAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGT-CGATTTTTCTC
*
32630864 GTTCAACCAAATGACTTAATATCCTTTTCAAAAATCTCGAAATATG
65 GTTCAACCAAATGGCTTAATATCCTTTTCAAAAATCTCGAAATATG
* * *
32630910 GCAATGTTTTGCGTTTGGAGATTCGAGATAACATACCCTAAGGTGCTGGGTGTCGATTTTTCTCG
1 GCAATGTTTTGCGTTTGGAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCG
32630975 TTCAACCAAATGGCTTAATATCCTTTTCAAAAATCTCGAAATATG
66 TTCAACCAAATGGCTTAATATCCTTTTCAAAAATCTCGAAATATG
* * * **
32631020 GCAATGCTTTGCGTTTGGAGATTCGAGATAACATATCCTAAGGTGCTGGGTGTCGATTTTTCTCG
1 GCAATGTTTTGCGTTTGGAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCG
* * * **
32631085 TCCAACCAAATAGCTAAATATCC-TTTCAAAAAT-TATAAA-ATGAG
66 TTCAACCAAATGGCTTAATATCCTTTTCAAAAATCTCGAAATAT--G
* *
32631129 GCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGTTGGGT-TCTGA--TTTCTC
1 GCAATGTTTTGCGTTTGGAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGTC-GATTTTTCTC
* *
32631190 GTTTAACCAAATTG-TTAAATATCCT
65 GTTCAACCAAATGGCTT-AATATCCT
32631215 CTTGATTTTT
Statistics
Matches: 365, Mismatches: 35, Indels: 26
0.86 0.08 0.06
Matches are distributed among these distances:
105 1 0.00
106 24 0.07
107 73 0.20
108 49 0.13
109 84 0.23
110 134 0.37
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (110 bp):
GCAATGTTTTGCGTTTGGAAATTCGAGAGAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCG
TTCAACCAAATGGCTTAATATCCTTTTCAAAAATCTCGAAATATG
Found at i:32637429 original size:75 final size:75
Alignment explanation
Indices: 32637291--32637430 Score: 228
Period size: 76 Copynumber: 1.9 Consensus size: 75
32637281 TTTTTTACGT
* *
32637291 AAATTTTATCATTTTTAGGGGTCAAAGTACAATTTTACCTTTACTAATTTAAAATTTTAAAAAAA
1 AAATTTTATCATTTTTAGGGGTCAAAGAAAAATTTTACCTTTACTAATTTAAAATTTTAAAAAAA
32637356 GAATAAATCA
66 GAATAAATCA
*
32637366 AAATTTTATTATTTTTAGGGGGGTCAAAGAAAAATTTTA-CTTTACTAATTTAAAATTTTAAAAA
1 AAATTTTATCATTTTTA--GGGGTCAAAGAAAAATTTTACCTTTACTAATTTAAAATTTTAAAAA
32637430 A
64 A
32637431 TTTAAAAGAA
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
75 16 0.27
76 26 0.43
77 18 0.30
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (75 bp):
AAATTTTATCATTTTTAGGGGTCAAAGAAAAATTTTACCTTTACTAATTTAAAATTTTAAAAAAA
GAATAAATCA
Found at i:32647655 original size:32 final size:31
Alignment explanation
Indices: 32647619--32647683 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
32647609 AAAATTTCAA
* *
32647619 AATTCGAAAATTAAAAGAGACTAAAATTGATC
1 AATTCAAAAAGTAAAAGA-ACTAAAATTGATC
* *
32647651 AATTCAAAAAGTATAGGAACTAAAATTGATC
1 AATTCAAAAAGTAAAAGAACTAAAATTGATC
32647682 AA
1 AA
32647684 ATTAAAGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.25
Consensus pattern (31 bp):
AATTCAAAAAGTAAAAGAACTAAAATTGATC
Found at i:32647701 original size:29 final size:28
Alignment explanation
Indices: 32647637--32647703 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 28
32647627 AATTAAAAGA
32647637 GACTAAAATTGATCAATTCAAAAAGTATAG
1 GACTAAAATTGATCAATT--AAAAGTATAG
*
32647667 GAACTAAAATTGATCAAATT-AAAGTATAAT
1 G-ACTAAAATTGATC-AATTAAAAGTAT-AG
32647697 GACTAAA
1 GACTAAA
32647704 TCCACAACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
29 13 0.39
30 3 0.09
31 13 0.39
32 4 0.12
ACGTcount: A:0.52, C:0.09, G:0.12, T:0.27
Consensus pattern (28 bp):
GACTAAAATTGATCAATTAAAAGTATAG
Found at i:32650103 original size:32 final size:32
Alignment explanation
Indices: 32650062--32650131 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
32650052 GCCATTTACC
*
32650062 ATGACAACTAGGATGCCAACGTGGCTAGTTGA
1 ATGACAACTAGGATGCCAACGTGGCCAGTTGA
32650094 ATGACAACTAGGATGCCAACGTGGCCAGTTGA
1 ATGACAACTAGGATGCCAACGTGGCCAGTTGA
32650126 ATGACA
1 ATGACA
32650132 GGTCTGCTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (32 bp):
ATGACAACTAGGATGCCAACGTGGCCAGTTGA
Found at i:32652503 original size:3 final size:3
Alignment explanation
Indices: 32652495--32652560 Score: 123
Period size: 3 Copynumber: 22.0 Consensus size: 3
32652485 ACTCCTATAT
32652495 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
32652543 ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA
32652561 GGACTAAATC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:32653639 original size:20 final size:21
Alignment explanation
Indices: 32653598--32653639 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
32653588 TCTTGTGTGA
*
32653598 TTTGGGCTATTAGGGTTTGTT
1 TTTGGGCTATTAGGGTTGGTT
32653619 TTTGGG-TATT-GGGCTTGGTT
1 TTTGGGCTATTAGGG-TTGGTT
32653639 T
1 T
32653640 AATTATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 3 0.16
20 10 0.53
21 6 0.32
ACGTcount: A:0.07, C:0.05, G:0.36, T:0.52
Consensus pattern (21 bp):
TTTGGGCTATTAGGGTTGGTT
Found at i:32654380 original size:175 final size:175
Alignment explanation
Indices: 32654161--32654698 Score: 859
Period size: 175 Copynumber: 3.1 Consensus size: 175
32654151 GCTCCACTTT
* ** *
32654161 GGGAGATAAGATCTGAAACGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTATTTTAA
1 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
* *
32654226 TCCGCTTCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTACTCTGCTGTAATCTCAG
66 TCCGCTTCACTGTAATCTCAGGGAGATAGGATTACTGTCTTCAATCTGCTCTGCTGTAATCTCAG
32654291 GGAGATAAGATCTGAAATCTTTAGGTCTGCTCCACTGTAATCTCA
131 GGAGATAAGATCTGAAATCTTTAGGTCTGCTCCACTGTAATCTCA
32654336 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
1 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
* *
32654401 TCCGCTTCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCTGTTGTAATCTCAG
66 TCCGCTTCACTGTAATCTCAGGGAGATAGGATTACTGTCTTCAATCTGCTCTGCTGTAATCTCAG
32654466 GGAGATAAGATCTGAAATCTTTAGGTCTGCTCCACTGTAATCTCA
131 GGAGATAAGATCTGAAATCTTTAGGTCTGCTCCACTGTAATCTCA
32654511 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
1 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
* * * *
32654576 TCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
66 TCCGCTTCACTGTAATC-TCAGGGAGATAGGATTACTGTCTTCAATCTGCTCTGCTGTAATCTCA
* **** * *
32654639 GGAAGATAAGATCT-CTGGCTTTA-ATCTGCTCCACTGTAACCTCA
130 GGGAGATAAGATCTGAAATCTTTAGGTCTGCTCCACTGTAATCTCA
*
32654683 GGGAGATAAGATCTGA
1 GGGAGATAAGACCTGA
32654699 AATTCTTCGG
Statistics
Matches: 340, Mismatches: 22, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
172 34 0.10
173 5 0.01
174 41 0.12
175 260 0.76
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (175 bp):
GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
TCCGCTTCACTGTAATCTCAGGGAGATAGGATTACTGTCTTCAATCTGCTCTGCTGTAATCTCAG
GGAGATAAGATCTGAAATCTTTAGGTCTGCTCCACTGTAATCTCA
Found at i:32654632 original size:87 final size:86
Alignment explanation
Indices: 32654179--32654690 Score: 475
Period size: 87 Copynumber: 5.9 Consensus size: 86
32654169 AGATCTGAAA
* * *
32654179 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTTCACTGTAATC
1 CGATCTACTCTGCTGTAATCTCAGAGAGATAAGAT-CTGTTATTTTAATCCGCTCCACTGTAATC
32654243 TCAGGGAGATAGGATTACTGGCTT
65 TCAGGGAGATAGGA-TACT-GCTT
* * ** * *
32654267 CAATCTACTCTGCTGTAATCTCAGGGAGATAAGATCTGAAATCTTTAGGTCTGCTCCACTGTAAT
1 CGATCTACTCTGCTGTAATCTCAGAGAGATAAGATCTGTTAT-TTTA-ATCCGCTCCACTGTAAT
* * * *
32654332 CTCAGGGAGATAAGA-CCTGATG
64 CTCAGGGAGATAGGATACTGCTT
* *
32654354 CGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTTCACTGTAAT
1 CGATCTACTCTGCTGTAATC-TCAGAGAGATAAGAT-CTGTTATTTTAATCCGCTCCACTGTAAT
*
32654417 CTCAGGGAGATAGGATTACTATCTT
64 CTCAGGGAGATAGGA-TACT-GCTT
* * * * ** * *
32654442 CAATCTGCTCTGTTGTAATCTCAGGGAGATAAGATCTGAAATCTTTAGGTCTGCTCCACTGTAAT
1 CGATCTACTCTGCTGTAATCTCAGAGAGATAAGATCTGTTAT-TTTA-ATCCGCTCCACTGTAAT
* * * *
32654507 CTCAGGGAGATAAGA-CCTGATG
64 CTCAGGGAGATAGGATACTGCTT
*
32654529 CGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTAA-
1 CGATCTACTCTGCTGTAATC-TCAGAGAGATAAGAT-CTGTTATTTTAATCCGCTCCACTGTAAT
*
32654591 CTTCAGGGAGATAGGATAGTGTCTT
64 C-TCAGGGAGATAGGATACTG-CTT
* * * *** * *
32654616 CGATCTGCTCCGCTGTAATCTCAG-GAAGATAAGATCTCTGGCTTTAATCTGCTCCACTGTAACC
1 CGATCTACTCTGCTGTAATCTCAGAG-AGATAAGATCTGTTATTTTAATCCGCTCCACTGTAATC
32654680 TCAGGGAGATA
65 TCAGGGAGATA
32654691 AGATCTGAAA
Statistics
Matches: 341, Mismatches: 62, Indels: 43
0.76 0.14 0.10
Matches are distributed among these distances:
84 1 0.00
85 55 0.16
86 15 0.04
87 131 0.38
88 74 0.22
89 9 0.03
90 56 0.16
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (86 bp):
CGATCTACTCTGCTGTAATCTCAGAGAGATAAGATCTGTTATTTTAATCCGCTCCACTGTAATCT
CAGGGAGATAGGATACTGCTT
Found at i:32654687 original size:218 final size:219
Alignment explanation
Indices: 32654410--32654868 Score: 672
Period size: 218 Copynumber: 2.1 Consensus size: 219
32654400 ATCCGCTTCA
* * *** *
32654410 CTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCTGTTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG
* * *
32654475 ATCTGAAA-TCTTTAGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTC
66 ATCTGAAATTC-TTAGGTCTACTCCACTGTAACCTCAGGGAGACAAGACCTGATGCGATCTACTC
** *
32654539 TACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATA
130 TACTGTAACTTCAGAGAGATAAGATAATTTATTTTAATCCGCTCCACTGTAACATCAGGGAGATA
* * *
32654604 GGA-TAGTGTCTTCGATCTGCTCCG
195 GGATTACTATCTTCAATCTGCTCCG
* * *
32654628 CTGTAATCTCAGGAAGATAAGATCT-CTGGCTTTAATCTGCTCCACTGTAACCTCAGGGAGATAA
1 CTGTAATCTCAGGGAGATAAGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAA
*
32654692 GATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGACAAGACCTGATGCGATCTACTC
65 GATCTGAAATTCTTAGGTCTACTCCACTGTAACCTCAGGGAGACAAGACCTGATGCGATCTACTC
*
32654757 TGCTGTAACTTCAGAGAGATAAGATAATTTATTTTAATCCGCTCCACTGTAACATCAGGGAGATA
130 TACTGTAACTTCAGAGAGATAAGATAATTTATTTTAATCCGCTCCACTGTAACATCAGGGAGATA
*
32654822 GGATTACTATCTTTAATCTGCTCCG
195 GGATTACTATCTTCAATCTGCTCCG
* *
32654847 CTGTAACCTTAGGGAGATAAGA
1 CTGTAATCTCAGGGAGATAAGA
32654869 CCTGTATAAT
Statistics
Matches: 214, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
218 175 0.82
219 39 0.18
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (219 bp):
CTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG
ATCTGAAATTCTTAGGTCTACTCCACTGTAACCTCAGGGAGACAAGACCTGATGCGATCTACTCT
ACTGTAACTTCAGAGAGATAAGATAATTTATTTTAATCCGCTCCACTGTAACATCAGGGAGATAG
GATTACTATCTTCAATCTGCTCCG
Found at i:32654696 original size:44 final size:43
Alignment explanation
Indices: 32654181--32654868 Score: 288
Period size: 44 Copynumber: 15.7 Consensus size: 43
32654171 ATCTGAAACG
* * * *
32654181 ATCTACTCTACTGTAACCTCAGAGAGATAAGATC-CTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTC-TT-CTTTA
* * * * * *
32654225 ATCCGCTTCACTGTAATCTCAGGGAGATAGGAT-TACTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-TCTTTA
* ** * **
32654269 ATCTACTCTGCTGTAATCTCAGGGAGATAAGATCTGAAATCTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT--CTTCTTTA
* * ** ***
32654314 GGTCTGCTCCACTGTAATCTCAGGGAGATAAGA-C-CTGATGCG
1 -ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTTCTTTA
* * * * *
32654356 ATCTACTCTACTGTAACTTCAGAGAGATAAGATC-CTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTC-TT-CTTTA
* * * * *
32654400 ATCCGCTTCACTGTAATCTCAGGGAGATAGGAT-TACTATCTTCA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-TCTTTA
*** * **
32654444 ATCTGCTCTGTTGTAATCTCAGGGAGATAAGATCTGAAATCTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT--CTTCTTTA
* * ** ***
32654489 GGTCTGCTCCACTGTAATCTCAGGGAGATAAGA-C-CTGATGCG
1 -ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTTCTTTA
* * * * *
32654531 ATCTACTCTACTGTAACTTCAGAGAGATAAGATC-CTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTC-TT-CTTTA
* * * * * **
32654575 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGT-GTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTTCTTTA
* * * *
32654618 ATCTGCTCCGCTGTAATCTCAGGAAGATAAGATCTCTGGCTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-TCTTTA
* **
32654662 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTTCTTTA
* * * ** ***
32654708 GTCTACTCCACTGTAACCTCAGGGAGACAAGA-C-CTGATGCG
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTTCTTTA
* ** * * * *
32654749 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATAAT-TTATTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTT-CTTTA
* * *
32654793 ATCCGCTCCACTGTAACATCAGGGAGATAGGAT-TACTATCTTTA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-TCTTTA
* *
32654837 ATCTGCTCCGCTGTAACCTTAGGGAGATAAGA
1 ATCTGCTCCACTGTAACCTCAGGGAGATAAGA
32654869 CCTGTATAAT
Statistics
Matches: 469, Mismatches: 143, Indels: 64
0.69 0.21 0.09
Matches are distributed among these distances:
41 82 0.17
42 8 0.02
43 32 0.07
44 238 0.51
45 18 0.04
46 90 0.19
47 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (43 bp):
ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTTCTTTA
Found at i:32656069 original size:7 final size:7
Alignment explanation
Indices: 32656057--32656099 Score: 61
Period size: 7 Copynumber: 6.0 Consensus size: 7
32656047 TTAGCCTCTC
32656057 CATTTTT
1 CATTTTT
32656064 CATTTTT
1 CATTTTT
32656071 CATTTTTTT
1 CA--TTTTT
32656080 CATTTTT
1 CATTTTT
32656087 CA-TTTT
1 CATTTTT
32656093 CATTTTT
1 CATTTTT
32656100 TTGACTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.18
7 20 0.61
9 7 0.21
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (7 bp):
CATTTTT
Found at i:32656084 original size:23 final size:22
Alignment explanation
Indices: 32656057--32656101 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
32656047 TTAGCCTCTC
32656057 CATTTTTCATTTTTCATTTTTTT
1 CATTTTTCA-TTTTCATTTTTTT
32656080 CATTTTTCATTTTCATTTTTTT
1 CATTTTTCATTTTCATTTTTTT
32656102 GACTCAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (22 bp):
CATTTTTCATTTTCATTTTTTT
Found at i:32656101 original size:16 final size:16
Alignment explanation
Indices: 32656059--32656092 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32656049 AGCCTCTCCA
32656059 TTTTTCATTTTTCATT
1 TTTTTCATTTTTCATT
32656075 TTTTTCATTTTTCATT
1 TTTTTCATTTTTCATT
32656091 TT
1 TT
32656093 CATTTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCATTTTTCATT
Found at i:32657105 original size:22 final size:22
Alignment explanation
Indices: 32657057--32657125 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
32657047 TTGATCTTGA
*
32657057 TTTTGATTTTTTCTTCTTTCTTC-T
1 TTTTGA-TTTTT-TTCATT-TTCAT
* *
32657081 TTTTG-TTTTTTTTATTTTGAT
1 TTTTGATTTTTTTCATTTTCAT
32657102 TTTTGATTTTTTTCATTTTCAT
1 TTTTGATTTTTTTCATTTTCAT
32657124 TT
1 TT
32657126 GGACTTTGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 2 0.05
21 10 0.26
22 21 0.55
24 5 0.13
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.77
Consensus pattern (22 bp):
TTTTGATTTTTTTCATTTTCAT
Found at i:32665312 original size:45 final size:44
Alignment explanation
Indices: 32665229--32665324 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 44
32665219 ATTACAACAT
*
32665229 CATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
*
32665273 TATTACATTCAACCAAACA-ATTA-AATTACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACACA--AGAA-TACTATTACGCCTCTATTC
32665318 CATTACA
1 CATTACA
32665325 GCTCTATTCC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
43 1 0.02
44 19 0.41
45 26 0.57
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.31
Consensus pattern (44 bp):
CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
Found at i:32665329 original size:16 final size:16
Alignment explanation
Indices: 32665310--32665358 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
32665300 ACTATTACGC
32665310 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
**
32665326 CTCTATTCCATTACTC
1 CTCTATTCCATTACAG
32665342 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
32665358 C
1 C
32665359 GAACCAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.22, C:0.35, G:0.04, T:0.39
Consensus pattern (16 bp):
CTCTATTCCATTACAG
Found at i:32674963 original size:19 final size:19
Alignment explanation
Indices: 32674941--32674983 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
32674931 AAAAATTCAA
* * *
32674941 AACAATATTTAAAATTTTT
1 AACAAAATTGAAAATTTTC
32674960 AACAAAAATTGAAAATTTTC
1 AAC-AAAATTGAAAATTTTC
32674980 AACA
1 AACA
32674984 CGATATAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.35
Consensus pattern (19 bp):
AACAAAATTGAAAATTTTC
Found at i:32682980 original size:14 final size:14
Alignment explanation
Indices: 32682961--32682988 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32682951 TTAAATAAGC
32682961 TGTTTTTATATATT
1 TGTTTTTATATATT
32682975 TGTTTTTATATATT
1 TGTTTTTATATATT
32682989 AATTTCATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (14 bp):
TGTTTTTATATATT
Found at i:32700982 original size:3 final size:3
Alignment explanation
Indices: 32700974--32701005 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
32700964 ATATTTTGCT
32700974 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32701006 TGATAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:32701206 original size:21 final size:18
Alignment explanation
Indices: 32701136--32701223 Score: 94
Period size: 18 Copynumber: 4.9 Consensus size: 18
32701126 AGTGATTATA
**
32701136 TATATTTATATATAAATT
1 TATATTTATATATATTTT
32701154 TATGATTT-TATA-ATTTT
1 TAT-ATTTATATATATTTT
32701171 TATATTTA-A-ATATTTT
1 TATATTTATATATATTTT
32701187 TATAAATTTATATCATATTTT
1 TAT--ATTTATAT-ATATTTT
32701208 TATATTTATATATATT
1 TATATTTATATATATT
32701224 AAACTAATAA
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
15 1 0.02
16 13 0.22
17 6 0.10
18 17 0.28
19 13 0.22
21 10 0.17
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (18 bp):
TATATTTATATATATTTT
Found at i:32702141 original size:18 final size:18
Alignment explanation
Indices: 32702118--32702155 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
32702108 TTTCGTGTAA
32702118 AACCGAATT-AATTCGGTT
1 AACCG-ATTGAATTCGGTT
32702136 AACCGATTGAATTCGGTT
1 AACCGATTGAATTCGGTT
32702154 AA
1 AA
32702156 TTGGTTGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (18 bp):
AACCGATTGAATTCGGTT
Found at i:32704749 original size:12 final size:12
Alignment explanation
Indices: 32704732--32704759 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32704722 ACAATTGAGG
32704732 ATTCACAAAAGA
1 ATTCACAAAAGA
32704744 ATTCACAAAAGA
1 ATTCACAAAAGA
32704756 ATTC
1 ATTC
32704760 CTCCAAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.18, G:0.07, T:0.21
Consensus pattern (12 bp):
ATTCACAAAAGA
Found at i:32706370 original size:2 final size:2
Alignment explanation
Indices: 32706363--32706393 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
32706353 CATGAATTTA
32706363 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32706394 GTTAATTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32710899 original size:34 final size:36
Alignment explanation
Indices: 32710831--32710905 Score: 109
Period size: 34 Copynumber: 2.1 Consensus size: 36
32710821 CATCTAAAAA
32710831 ATAAGAAGAGACATAAAAGTGAAAACTTAAAAAGACC
1 ATAAGAAGAGA-ATAAAAGTGAAAACTTAAAAAGACC
* *
32710868 ATAAGAAGAG-ATAGAAGTG-AAGCTTAAAAAGACC
1 ATAAGAAGAGAATAAAAGTGAAAACTTAAAAAGACC
32710902 ATAA
1 ATAA
32710906 AATTAACATC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 18 0.50
35 8 0.22
37 10 0.28
ACGTcount: A:0.57, C:0.09, G:0.19, T:0.15
Consensus pattern (36 bp):
ATAAGAAGAGAATAAAAGTGAAAACTTAAAAAGACC
Found at i:32710979 original size:114 final size:117
Alignment explanation
Indices: 32710771--32710981 Score: 286
Period size: 114 Copynumber: 1.8 Consensus size: 117
32710761 AAAATAAAAA
* * * *
32710771 CTTAACAAGACCATTAAAATCAGCATCTTCCTCAAACATAAACATGCAATCATCTAAAAAATAAG
1 CTTAAAAAGACCATTAAAATCAACATCTTCCTCAAACACAAACATG--ATAATCTAAAAAATAAG
32710836 AAGAGACATAAAAGTGAAAACTTAAAAAGACCATAAGAAGAGATAGAAGTGAAG
64 AAGAGACATAAAAGTGAAAACTTAAAAAGACCATAAGAAGAGATAGAAGTGAAG
* * * *
32710890 CTTAAAAAGACCA-TAAAATTAACATCTTTCTCAAACACAAACATG-TAATC-AGAAAATACGAA
1 CTTAAAAAGACCATTAAAATCAACATCTTCCTCAAACACAAACATGATAATCTAAAAAATAAGAA
*
32710952 GAGACATAGAAGTG-AAACTTAAAAAAGACC
66 GAGACATAAAAGTGAAAACTT-AAAAAGACC
32710982 TTAAAACCAG
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
113 6 0.07
114 32 0.39
115 4 0.05
118 28 0.34
119 12 0.15
ACGTcount: A:0.52, C:0.17, G:0.12, T:0.19
Consensus pattern (117 bp):
CTTAAAAAGACCATTAAAATCAACATCTTCCTCAAACACAAACATGATAATCTAAAAAATAAGAA
GAGACATAAAAGTGAAAACTTAAAAAGACCATAAGAAGAGATAGAAGTGAAG
Found at i:32715058 original size:21 final size:21
Alignment explanation
Indices: 32715034--32715089 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
32715024 CACCATTGTT
*
32715034 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
32715055 TCTAATCTCACCGTTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
32715076 ACTAATCTCACCGC
1 TCTAATCTCACCGC
32715090 CACTGCTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:32719677 original size:18 final size:18
Alignment explanation
Indices: 32719654--32719696 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32719644 GTCGATAACA
32719654 AAGAGGAAACTGAGAACG
1 AAGAGGAAACTGAGAACG
* **
32719672 AAGAGGGAGTTGAGAACG
1 AAGAGGAAACTGAGAACG
32719690 AAGAGGA
1 AAGAGGA
32719697 TCTGAAAACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.07, G:0.40, T:0.07
Consensus pattern (18 bp):
AAGAGGAAACTGAGAACG
Found at i:32720346 original size:84 final size:85
Alignment explanation
Indices: 32720190--32720357 Score: 194
Period size: 84 Copynumber: 2.0 Consensus size: 85
32720180 ATGCTCCACA
* * * * *
32720190 TACTTGTGTTGTTATAGGTATGTCACAGGATCAACCAAAATTGGATTCTAACCTGATCGCTGGCG
1 TACTTGTGTTGTTACAGGTATGTCACAGGATCAACCAAAACTGGATTCTAACCTGACCGCTGACA
* *
32720255 TTGTCTTACGTATGGTGAAG
66 TTATCTTACCTATGGTGAAG
* * * ** * **
32720275 TACTTGTGTTGTTGCAGGTATGTTACA-GATCATCTGAAACTGGATTCTAACTTGACCTTTGACA
1 TACTTGTGTTGTTACAGGTATGTCACAGGATCAACCAAAACTGGATTCTAACCTGACCGCTGACA
32720339 TTATCTTACCTATGGTGAA
66 TTATCTTACCTATGGTGAA
32720358 AATGAGTCCT
Statistics
Matches: 68, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
84 44 0.65
85 24 0.35
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (85 bp):
TACTTGTGTTGTTACAGGTATGTCACAGGATCAACCAAAACTGGATTCTAACCTGACCGCTGACA
TTATCTTACCTATGGTGAAG
Found at i:32727583 original size:19 final size:18
Alignment explanation
Indices: 32727555--32727594 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
32727545 CACCATTTTG
32727555 TTTGCTAATCCATTTCCC
1 TTTGCTAATCCATTTCCC
*
32727573 TTTGTCTAATCCATTTTCC
1 TTTG-CTAATCCATTTCCC
32727592 TTT
1 TTT
32727595 TACTGGGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.15, C:0.28, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTGCTAATCCATTTCCC
Found at i:32729969 original size:91 final size:89
Alignment explanation
Indices: 32729811--32729990 Score: 261
Period size: 91 Copynumber: 2.0 Consensus size: 89
32729801 AGTTACGCAC
* *
32729811 GAGGAAGGGTTAGCACCCTCATAAAGCCCAAAATCGGTACCAAATTAATTATTTGATGTCCTAGT
1 GAGGAAGGGTTAGCACCCTCATAAAGCCCAAAATCGGTACCAAATTAATCATTTAATGTCCTAGT
32729876 GTCGAAGGTTTTAAAAAAATTTTAAA
66 GTCGAAGG--TTAAAAAAATTTTAAA
* * * * * *
32729902 GAGGAAGGGTTAGCACCCTCGTGACGCCCAAAATCGGTACCAAATTGATCATTTAATGTCTTTGT
1 GAGGAAGGGTTAGCACCCTCATAAAGCCCAAAATCGGTACCAAATTAATCATTTAATGTCCTAGT
*
32729967 GTCGAAGGTTAAAAAGATTTTAAA
66 GTCGAAGGTTAAAAAAATTTTAAA
32729991 ATCAACTCAA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
89 15 0.19
91 65 0.81
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (89 bp):
GAGGAAGGGTTAGCACCCTCATAAAGCCCAAAATCGGTACCAAATTAATCATTTAATGTCCTAGT
GTCGAAGGTTAAAAAAATTTTAAA
Found at i:32732012 original size:16 final size:17
Alignment explanation
Indices: 32731987--32732028 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
32731977 TATTTTTTTT
*
32731987 GTTTGTTTTGGGC-TAG
1 GTTTGGTTTGGGCTTAG
32732003 GTTTGGTTTGGGCTTAG
1 GTTTGGTTTGGGCTTAG
*
32732020 GTTTAGTTT
1 GTTTGGTTT
32732029 ATTGGGTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.07, C:0.05, G:0.36, T:0.52
Consensus pattern (17 bp):
GTTTGGTTTGGGCTTAG
Found at i:32732480 original size:44 final size:44
Alignment explanation
Indices: 32732421--32732777 Score: 120
Period size: 44 Copynumber: 8.1 Consensus size: 44
32732411 CTGTAACCTC
* * * * *
32732421 AGGGAGGTAAAATCTGCCATCTTCGATTTACTCCACTACTGCCT
1 AGGGAGATAAGATCTGCAATCTTCAATCTACTCCACTACTGCCT
* * * * * *
32732465 AGGGAGATAAGATCTGTAATATTCAAGCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGCAATCTTCAATCTACTCCACTACTGCCT
* * * * * * * *
32732509 AGGGAGAT-AGAAT-TACTAGCTTCAATATACTTCGCT-GTAACCT
1 AGGGAGATAAG-ATCTGCAATCTTCAATCTACTCCACTACT-GCCT
* * * * *
32732552 CAGGGAGGTAAAATCTGTC-ATCTTCGATCTGCTCCACTACTGCTT
1 -AGGGAGATAAGATCTG-CAATCTTCAATCTACTCCACTACTGCCT
* * * * * * *
32732597 AGGGAGATAAGATCTGAAATCTTCAATTTATTCCATTGCTACCC
1 AGGGAGATAAGATCTGCAATCTTCAATCTACTCCACTACTGCCT
* *** * * **
32732641 AGGGAGAT-AGAAT-TACTGGCTTCAATATACTCCACTGCAACCT
1 AGGGAGATAAG-ATCTGCAATCTTCAATCTACTCCACTACTGCCT
* * ** * *
32732684 CAGGGAGGTAAAAT-T-CACCATCTTTGATCTGCTCCACTACTGCTT
1 -AGGGAGATAAGATCTGCA--ATCTTCAATCTACTCCACTACTGCCT
* * * * *
32732729 AGGGAG-TCAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCC
1 AGGGAGAT-AAGATCTGCAATCTTCAATCTACTCCACTACTGCCT
32732773 AGGGA
1 AGGGA
32732778 AGTAGAATTA
Statistics
Matches: 218, Mismatches: 79, Indels: 32
0.66 0.24 0.10
Matches are distributed among these distances:
42 1 0.00
43 41 0.19
44 138 0.63
45 35 0.16
46 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAGATCTGCAATCTTCAATCTACTCCACTACTGCCT
Found at i:32732790 original size:132 final size:132
Alignment explanation
Indices: 32732391--32732791 Score: 583
Period size: 132 Copynumber: 3.0 Consensus size: 132
32732381 TGGATATAGG
* * * *
32732391 ACTGACTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATTTACTCCA
1 ACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCA
* * * *
32732456 CTACTGCCTAGGGAGATAAGATCTGTAATATTCAAGCTATTCCACTGCTGCCCAGGGAGATAGAA
66 CTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAA
32732521 TT
131 TT
* * * *
32732523 ACTAGCTTCAATATACTTCGCTGTAACCTCAGGGAGGTAAAATCTGTCATCTTCGATCTGCTCCA
1 ACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCA
* * *
32732588 CTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATTTATTCCATTGCTACCCAGGGAGATAGAA
66 CTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAA
32732653 TT
131 TT
* * *
32732655 ACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCC
1 ACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCC
*
32732719 ACTACTGCTTAGGGAG-TCAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAGGGA-AGTA
65 ACTACTGCTTAGGGAGAT-AAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TA
32732782 GAATT
128 GAATT
32732787 ACTGG
1 ACTGG
32732792 NNNNNNNNNN
Statistics
Matches: 240, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
131 3 0.01
132 237 0.99
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
ACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCA
CTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAA
TT
Found at i:32733088 original size:133 final size:133
Alignment explanation
Indices: 32732850--32733129 Score: 452
Period size: 133 Copynumber: 2.1 Consensus size: 133
32732840 NNNNNNNNGA
** *
32732850 CAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGT
1 CAAGATCTGCTATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCATCAATGT
* *
32732915 ACTCCACTGTAACTACAAGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTATGCAAGA
66 ACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATCTTCGATCAGCTTCGCTGTCTATGCAAGA
32732980 AGG
131 AGG
**
32732983 CAAGATCTGCTATCTTTGATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCATCAATGT
1 CAAGATCTGCTATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCATCAATGT
* * *
32733048 TCTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCAGCTTCGCTGTCTATGCAGGA
66 ACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATCTTCGATCAGCTTCGCTGTCTATGCAAGA
*
32733113 ATG
131 AGG
*
32733116 TAAGATCTGCTATC
1 CAAGATCTGCTATC
32733130 ATCACTGATC
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
133 135 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (133 bp):
CAAGATCTGCTATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCATCAATGT
ACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATCTTCGATCAGCTTCGCTGTCTATGCAAGA
AGG
Found at i:32741508 original size:16 final size:17
Alignment explanation
Indices: 32741489--32741530 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
32741479 CTGATTTTTT
32741489 GTTTGTTTTGGGC-TAG
1 GTTTGTTTTGGGCTTAG
*
32741505 GTTTGGTTTGGGCTTAG
1 GTTTGTTTTGGGCTTAG
32741522 GTTTAGTTT
1 GTTT-GTTT
32741531 ATTGGGTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 12 0.55
17 7 0.32
18 3 0.14
ACGTcount: A:0.07, C:0.05, G:0.36, T:0.52
Consensus pattern (17 bp):
GTTTGTTTTGGGCTTAG
Found at i:32744606 original size:42 final size:42
Alignment explanation
Indices: 32744545--32744625 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
32744535 ACTAATATTG
*
32744545 CAACAAATTCTGGTGTTAGATTGTATCAAAAGTCTTATTTGA
1 CAACAAATTCTGGTATTAGATTGTATCAAAAGTCTTATTTGA
**
32744587 CAACAAATTCTGGTATTAGATTGTATCAGTAGTCTTATT
1 CAACAAATTCTGGTATTAGATTGTATCAAAAGTCTTATT
32744626 CCACAGTCGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (42 bp):
CAACAAATTCTGGTATTAGATTGTATCAAAAGTCTTATTTGA
Found at i:32748156 original size:19 final size:17
Alignment explanation
Indices: 32748123--32748155 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
32748113 ATATATTTTA
32748123 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
32748140 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
32748156 TATTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:32753252 original size:14 final size:15
Alignment explanation
Indices: 32753235--32753269 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
32753225 ACAGTAAAAA
32753235 TTTAATACTT-AATT
1 TTTAATACTTAAATT
*
32753249 TTTAACACTTAAATT
1 TTTAATACTTAAATT
32753264 TTTAAT
1 TTTAAT
32753270 TTACGAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (15 bp):
TTTAATACTTAAATT
Found at i:32763564 original size:31 final size:31
Alignment explanation
Indices: 32763529--32763590 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
32763519 TCGGTCATGA
*
32763529 AATTATTAATAATTTTATAATTTAGTCACTC
1 AATTATTAATAAATTTATAATTTAGTCACTC
32763560 AATTATTAATAAATTTATAATTTAGTCACTC
1 AATTATTAATAAATTTATAATTTAGTCACTC
32763591 TCAACGTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (31 bp):
AATTATTAATAAATTTATAATTTAGTCACTC
Found at i:32766944 original size:3 final size:3
Alignment explanation
Indices: 32766927--32766990 Score: 51
Period size: 3 Copynumber: 22.0 Consensus size: 3
32766917 TTTATGCAAT
* * * * * * *
32766927 AGA ATA AGA AG- AGA AGA AGA AGA AGA AGA GGA GGA GGA GGA GGA GGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
32766974 AG- AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA
32766991 GAAAAAAATG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
2 4 0.07
3 51 0.93
ACGTcount: A:0.56, C:0.00, G:0.42, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:32771518 original size:18 final size:18
Alignment explanation
Indices: 32771495--32771570 Score: 63
Period size: 17 Copynumber: 4.5 Consensus size: 18
32771485 TTAATTCTAA
*
32771495 AAAAATAAAGAAATATAT
1 AAAAATAAATAAATATAT
*
32771513 AAAAATACATAAATAT-T
1 AAAAATAAATAAATATAT
* *
32771530 TAAAAT--ATATATA-AT
1 AAAAATAAATAAATATAT
**
32771545 AAATTTAAA-AAATATAT
1 AAAAATAAATAAATATAT
32771562 AAAAATAAA
1 AAAAATAAA
32771571 AACAATTTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
15 10 0.23
16 4 0.09
17 16 0.36
18 14 0.32
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (18 bp):
AAAAATAAATAAATATAT
Found at i:32771552 original size:20 final size:19
Alignment explanation
Indices: 32771487--32771567 Score: 76
Period size: 20 Copynumber: 4.2 Consensus size: 19
32771477 ATTTGATCTT
32771487 AATTCTAAAAAA-ATA-AAGA
1 AATT-TAAAAAATATATAA-A
* *
32771506 AATATATAAAAATACATAAA
1 AATTTA-AAAAATATATAAA
* *
32771526 TATTTAAAATATATATAATA
1 AATTTAAAAAATATATAA-A
32771546 AATTTAAAAAATATATAAA
1 AATTTAAAAAATATATAAA
32771565 AAT
1 AAT
32771568 AAAAACAATT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
18 2 0.04
19 22 0.44
20 24 0.48
21 2 0.04
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.31
Consensus pattern (19 bp):
AATTTAAAAAATATATAAA
Found at i:32771557 original size:9 final size:10
Alignment explanation
Indices: 32771492--32771568 Score: 63
Period size: 10 Copynumber: 7.8 Consensus size: 10
32771482 ATCTTAATTC
*
32771492 TAAAAAAATA
1 TAAAAATATA
32771502 -AAGAAATATA
1 TAA-AAATATA
*
32771512 TAAAAATACA
1 TAAAAATATA
*
32771522 T--AAATATT
1 TAAAAATATA
32771530 TAAAATATATA
1 TAAAA-ATATA
*
32771541 TAATAAATTTA
1 TAA-AAATATA
32771552 -AAAAATATA
1 TAAAAATATA
32771561 TAAAAATA
1 TAAAAATA
32771569 AAAACAATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
8 6 0.11
9 8 0.15
10 24 0.45
11 13 0.25
12 2 0.04
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (10 bp):
TAAAAATATA
Found at i:32771572 original size:18 final size:18
Alignment explanation
Indices: 32771492--32771572 Score: 54
Period size: 18 Copynumber: 4.3 Consensus size: 18
32771482 ATCTTAATTC
* * *
32771492 TAAAAAAATAAAGAAATA
1 TAAAAAAATATATAAAAA
* * *
32771510 TATAAAAATACATAAATAT
1 TAAAAAAATATATAAA-AA
* *
32771529 TTAAAATATATATAATAAA
1 TAAAAAAATATATAA-AAA
*
32771548 TTTAAAAAATATATAAAAA
1 -TAAAAAAATATATAAAAA
32771567 TAAAAA
1 TAAAAA
32771573 CAATTTTATA
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
18 18 0.38
19 15 0.31
20 15 0.31
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (18 bp):
TAAAAAAATATATAAAAA
Found at i:32771613 original size:25 final size:24
Alignment explanation
Indices: 32771578--32771626 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
32771568 AAAAACAATT
* *
32771578 TTATATTAATATTAAATATAAATAA
1 TTATATCAATATCAAATA-AAATAA
32771603 TTATATCAATATCAAATAAAATAA
1 TTATATCAATATCAAATAAAATAA
32771627 AATAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (24 bp):
TTATATCAATATCAAATAAAATAA
Found at i:32773127 original size:20 final size:21
Alignment explanation
Indices: 32773102--32773153 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 21
32773092 AAATGAATTC
32773102 TTTAATTAAAAAT-ATTTTTA
1 TTTAATTAAAAATCATTTTTA
32773122 TTTAATTATCAAAAATCATTTTTA
1 TTTAA-T-T-AAAAATCATTTTTA
*
32773146 TTGAATTA
1 TTTAATTA
32773154 TGGAGACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
20 5 0.19
21 2 0.07
22 2 0.07
23 7 0.26
24 11 0.41
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (21 bp):
TTTAATTAAAAATCATTTTTA
Found at i:32773143 original size:23 final size:23
Alignment explanation
Indices: 32773109--32773154 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
32773099 TTCTTTAATT
*
32773109 AAAAATATTTTTATTTAATTATC
1 AAAAATATTTTTATTGAATTATC
32773132 AAAAATCATTTTTATTGAATTAT
1 AAAAAT-ATTTTTATTGAATTAT
32773155 GGAGACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.50
Consensus pattern (23 bp):
AAAAATATTTTTATTGAATTATC
Found at i:32786739 original size:15 final size:15
Alignment explanation
Indices: 32786719--32786749 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32786709 TTTCCAATTC
32786719 ACCAAGTATCTCCAT
1 ACCAAGTATCTCCAT
*
32786734 ACCAAGTATCTTCAT
1 ACCAAGTATCTCCAT
32786749 A
1 A
32786750 TAAAAAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (15 bp):
ACCAAGTATCTCCAT
Found at i:32789593 original size:192 final size:191
Alignment explanation
Indices: 32789256--32789646 Score: 764
Period size: 192 Copynumber: 2.0 Consensus size: 191
32789246 AAATCTCTAT
32789256 TTACCATATATATATATATATATATAGAGAAATTTAGAATTATCTAACTTTTTTCATTCTTGTTG
1 TTACCATATATATATATATATATATAGAGAAATTTAGAATTATCTAACTTTTTTCATTCTTGTTG
32789321 TAATAATTTAAAAGTTGTGGGTTTTTATATCATTAAGAATTAGTTGTATTAAATATCTTCAAACT
66 TAATAATTTAAAAGTTGTGGGTTTTTATATCATTAAGAATTAGTTGTATTAAATATCTTCAAACT
32789386 ATGAACTAAATTTTAAACGAGTTACTTAAGTTGAGTTCAAATTAGGTTCTCTTTGTCATCA
131 ATGAACTAAATTTTAAACGAGTTACTTAAGTTGAGTTCAAATTAGGTTCTCTTTGTCATCA
32789447 TTACCATATATTATATATATATATATAGAGAAATTTAGAATTATCTAACTTTTTTCATTCTTGTT
1 TTACCATATA-TATATATATATATATAGAGAAATTTAGAATTATCTAACTTTTTTCATTCTTGTT
32789512 GTAATAATTTAAAAGTTGTGGGTTTTTATATCATTAAGAATTAGTTGTATTAAATATCTTCAAAC
65 GTAATAATTTAAAAGTTGTGGGTTTTTATATCATTAAGAATTAGTTGTATTAAATATCTTCAAAC
32789577 TATGAACTAAATTTTAAACGAGTTACTTAAGTTGAGTTCAAATTAGGTTCTCTTTGTCATCA
130 TATGAACTAAATTTTAAACGAGTTACTTAAGTTGAGTTCAAATTAGGTTCTCTTTGTCATCA
*
32789639 TTATCATA
1 TTACCATA
32789647 ATTTTTCTAT
Statistics
Matches: 198, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
191 10 0.05
192 188 0.95
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.44
Consensus pattern (191 bp):
TTACCATATATATATATATATATATAGAGAAATTTAGAATTATCTAACTTTTTTCATTCTTGTTG
TAATAATTTAAAAGTTGTGGGTTTTTATATCATTAAGAATTAGTTGTATTAAATATCTTCAAACT
ATGAACTAAATTTTAAACGAGTTACTTAAGTTGAGTTCAAATTAGGTTCTCTTTGTCATCA
Found at i:32791952 original size:46 final size:46
Alignment explanation
Indices: 32791884--32792009 Score: 132
Period size: 44 Copynumber: 2.8 Consensus size: 46
32791874 ATACGTCACC
* ** * *
32791884 TATGAAACCGTCGTTCAGTGAGAGTCGAAGCCAGAGTCATGACACT
1 TATGAAACTGTCACTCAATGAGAGTCGAAGCCAGAGTCACGACACT
*
32791930 TATGAAACTGTCACTCAATGAGAG-C-AA-CTCAGAGTCACGTCACT
1 TATGAAACTGTCACTCAATGAGAGTCGAAGC-CAGAGTCACGACACT
** * *
32791974 TATGAATTTGTCACTCAATGGGAGTCGAAGTCAGAG
1 TATGAAACTGTCACTCAATGAGAGTCGAAGCCAGAG
32792010 CGAGGTATCT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
43 1 0.02
44 36 0.55
45 2 0.03
46 27 0.41
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (46 bp):
TATGAAACTGTCACTCAATGAGAGTCGAAGCCAGAGTCACGACACT
Found at i:32795092 original size:205 final size:205
Alignment explanation
Indices: 32794760--32795319 Score: 924
Period size: 205 Copynumber: 2.7 Consensus size: 205
32794750 AGCTGGAACT
* *
32794760 AGGTACATTGAAACTAGTCTCCTTTTTCCCTTCGATATTGAACAAAAAAATAATTTTGAAATTTG
1 AGGTACATTGAAACTAGTCTCCTATTTCCCTCCGATATTGAACAAAAAAATAATTTTGAAATTTG
* * *
32794825 AATTACAATATGATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCTCAATGAAAATTTTG
66 AATTACAATATAATAATGCTTGGTGCGGTGTAATTAATGAATGGAGATTCTCAGTGAAAATTTTG
* * *
32794890 ATTACACGTTTCATTCACATACAAATAATACATCACTTCTGAAACTGTCACTCAGTGAGAGTAGA
131 ATTACACGTTTCATTCACACACAAATAACACATCACTTATGAAACTGTCACTCAGTGAGAGTAGA
32794955 AACCAGAGCC
196 AACCAGAGCC
* * *
32794965 AGGTACATTGAAA-TGAGTCTCCTATTTCACTCCGATAATGAACAAAAAAATAATTTGGAAATTT
1 AGGTACATTGAAACT-AGTCTCCTATTTCCCTCCGATATTGAACAAAAAAATAATTTTGAAATTT
32795029 GAATTACAATATAATAATGCTTGGTGCGGTGTAATTAATGAATGGAGATTCTCAGTGAAAATTTT
65 GAATTACAATATAATAATGCTTGGTGCGGTGTAATTAATGAATGGAGATTCTCAGTGAAAATTTT
* * * *
32795094 TATTACAGGTTTCATTCACACACAAATGACACATCACTTATGAAACTGTCACTCAGTGAGAGTTG
130 GATTACACGTTTCATTCACACACAAATAACACATCACTTATGAAACTGTCACTCAGTGAGAGTAG
32795159 AAACCAGAGCC
195 AAACCAGAGCC
*
32795170 AGGTACATCGAAACTAGTCTCCTATTTCCCTCCGATATTGAACAAAAAAATAATTTTGAAATTTG
1 AGGTACATTGAAACTAGTCTCCTATTTCCCTCCGATATTGAACAAAAAAATAATTTTGAAATTTG
* * *
32795235 AATTACAATATAATAATGCTTAGTGTGGTGTAATTAATAAATGGAGATTCTCAGTGAAAATTTTG
66 AATTACAATATAATAATGCTTGGTGCGGTGTAATTAATGAATGGAGATTCTCAGTGAAAATTTTG
*
32795300 ATTACACATTTCATTCACAC
131 ATTACACGTTTCATTCACAC
32795320 TTATGAAACT
Statistics
Matches: 328, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
204 1 0.00
205 326 0.99
206 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (205 bp):
AGGTACATTGAAACTAGTCTCCTATTTCCCTCCGATATTGAACAAAAAAATAATTTTGAAATTTG
AATTACAATATAATAATGCTTGGTGCGGTGTAATTAATGAATGGAGATTCTCAGTGAAAATTTTG
ATTACACGTTTCATTCACACACAAATAACACATCACTTATGAAACTGTCACTCAGTGAGAGTAGA
AACCAGAGCC
Found at i:32798967 original size:6 final size:6
Alignment explanation
Indices: 32798956--32798981 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
32798946 CAGAAGAAGA
32798956 TTTGGG TTTGGG TTTGGG TTTGGG TT
1 TTTGGG TTTGGG TTTGGG TTTGGG TT
32798982 CATAAGCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (6 bp):
TTTGGG
Found at i:32811449 original size:15 final size:15
Alignment explanation
Indices: 32811424--32811456 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
32811414 ATATGGTTAT
32811424 TAATATAATTAAATAA
1 TAATATAATTAAA-AA
32811440 TAAT-TAATTAAAAA
1 TAATATAATTAAAAA
32811454 TAA
1 TAA
32811457 ATACTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 8 0.47
16 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
TAATATAATTAAAAA
Found at i:32812950 original size:8 final size:8
Alignment explanation
Indices: 32812937--32812971 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
32812927 CACCCCTTTA
32812937 AAAATTTT
1 AAAATTTT
32812945 AAAATTTT
1 AAAATTTT
32812953 AAAATTTT
1 AAAATTTT
32812961 AAAATTTT
1 AAAATTTT
32812969 AAA
1 AAA
32812972 TTAGTAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
AAAATTTT
Found at i:32812979 original size:16 final size:16
Alignment explanation
Indices: 32812937--32812980 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
32812927 CACCCCTTTA
*
32812937 AAAATTTTAAAATTTT
1 AAAATTGTAAAATTTT
*
32812953 AAAATTTTAAAATTTT
1 AAAATTGTAAAATTTT
32812969 -AAATTAGTAAAA
1 AAAATT-GTAAAA
32812981 GTAAAATTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
AAAATTGTAAAATTTT
Found at i:32814714 original size:26 final size:26
Alignment explanation
Indices: 32814678--32814759 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
32814668 CAAAAATTAT
32814678 TCGATTCGAATTCCATCTCACTCGAC
1 TCGATTCGAATTCCATCTCACTCGAC
32814704 TCGATTCGAATTCCATCTCACTCGAC
1 TCGATTCGAATTCCATCTCACTCGAC
*
32814730 TCGATTCGAATTCTATCTCACTCGAC
1 TCGATTCGAATTCCATCTCACTCGAC
32814756 TCGA
1 TCGA
32814760 GAAAACTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.23, C:0.33, G:0.12, T:0.32
Consensus pattern (26 bp):
TCGATTCGAATTCCATCTCACTCGAC
Found at i:32817988 original size:20 final size:21
Alignment explanation
Indices: 32817945--32817993 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
32817935 ATAGATATAT
*
32817945 ATATATATAGATATGTAAACAA
1 ATATATA-AAATATGTAAACAA
32817967 AT-TATAAAATATGTATAA-AA
1 ATATATAAAATATGTA-AACAA
32817987 ATATATA
1 ATATATA
32817994 TGAGTACGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 12 0.50
21 10 0.42
22 2 0.08
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (21 bp):
ATATATAAAATATGTAAACAA
Found at i:32818053 original size:38 final size:38
Alignment explanation
Indices: 32817997--32818130 Score: 114
Period size: 38 Copynumber: 3.6 Consensus size: 38
32817987 ATATATATGA
* **
32817997 GTACGTATATGTACATATATATAAGTTATAAAAAATAT
1 GTACGTATATATGTATATATATAAGTTATAAAAAATAT
* * * *
32818035 GTACGTATCTATGTATATATA-GA-TTATAAAAATGTAC
1 GTACGTATATATGTATATATATAAGTTATAAAAA-ATAT
* * *
32818072 ATATGTATATATGTATATATA-GA-TTATAAAAAATAT
1 GTACGTATATATGTATATATATAAGTTATAAAAAATAT
*
32818108 ACGTATGTATATATGTATATATA
1 --GTACGTATATATGTATATATA
32818131 AATTACAAAG
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
36 11 0.14
37 32 0.40
38 37 0.46
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (38 bp):
GTACGTATATATGTATATATATAAGTTATAAAAAATAT
Done.