Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold750

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7438
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38


Found at i:4734 original size:20 final size:20

Alignment explanation


    Indices: 4705--4765  Score: 72
    Period size: 20  Copynumber: 3.1  Consensus size: 20

       4695 CATTGTAAAG

                                 
       4705 TTAATATTTTTT-TATATTTT
          1 TTAAT-TTTTTTATATATTTT

                             ** 
       4725 TTAATTTTTTTATATATCCT
          1 TTAATTTTTTTATATATTTT

               *                
       4745 TTAGTTTTTTTATA-ATTTT
          1 TTAATTTTTTTATATATTTT

              
       4764 TT
          1 TT

       4766 TAGATGTAAA


Statistics
Matches: 35,  Mismatches: 5, Indels: 3
        0.81            0.12        0.07

Matches are distributed among these distances:
  19   11  0.31
  20   24  0.69

ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72


Consensus pattern (20 bp):   
TTAATTTTTTTATATATTTT

Done.