Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2385

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 579

Length: 966
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.21

Warning! 303 characters in sequence are not A, C, G, or T


Found at i:210 original size:73 final size:73

Alignment explanation


    Indices: 88--238  Score: 248
    Period size: 73  Copynumber: 2.1  Consensus size: 73

         78 TATCGACGGT

                                                                             
         88 TACCAACTGATACCAGTTGAAAGTCTACAGATATTTGATGAGTAACAGTTGGCACCAGTAGAGGT
          1 TACCAACTGATACCAGTTGAAAGTCTACAGATATTTGATGAGTAACAGTTGGCACCAGTAGAGGT

                    
        153 TACACTGA
         66 TACACTGA

                                                     * **       *            
        161 TACCAACTGATACCAGTTGAAAGTCTACAGATATTTGATGATTGTCAGTTGGTACCAGTAGAGGT
          1 TACCAACTGATACCAGTTGAAAGTCTACAGATATTTGATGAGTAACAGTTGGCACCAGTAGAGGT

             **     
        226 TGTACTGA
         66 TACACTGA

                 
        234 TACCA
          1 TACCA

        239 GATTATACTC


Statistics
Matches: 72,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  73   72  1.00

ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28


Consensus pattern (73 bp):   
TACCAACTGATACCAGTTGAAAGTCTACAGATATTTGATGAGTAACAGTTGGCACCAGTAGAGGT
TACACTGA
Done.