Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4485

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 316

Length: 527
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33


Found at i:461 original size:32 final size:33

Alignment explanation


    Indices: 407--481  Score: 134
    Period size: 32  Copynumber: 2.3  Consensus size: 33

        397 ATTATAAAGC

                                           * 
        407 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
          1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT

                                             
        440 ATGTATAATTGA-CTAAAATTAATTGTTGGTAT
          1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT

                      
        472 ATGTATAATT
          1 ATGTATAATT

        482 CAAGCTTTAA


Statistics
Matches: 41,  Mismatches: 1, Indels: 1
        0.95            0.02        0.02

Matches are distributed among these distances:
  32   29  0.71
  33   12  0.29

ACGTcount: A:0.36, C:0.04, G:0.16, T:0.44


Consensus pattern (33 bp):   
ATGTATAATTGACCTAAAATTAATTGTTGGTAT

Done.