Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2832

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 504

Length: 840
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:480 original size:31 final size:30

Alignment explanation


    Indices: 445--529  Score: 107
    Period size: 31  Copynumber: 2.7  Consensus size: 30

        435 TCATATAGTG

                      *             * **   
        445 TGGCATGGTACTATGGTAAGGTAATATTGTA
          1 TGGCATGGTAATAT-GTAAGGTAAGACGGTA

                                           
        476 TGGCATGGTAATATTGTAAGGTAAGACGGTA
          1 TGGCATGGTAATA-TGTAAGGTAAGACGGTA

                                   
        507 TGGCATGGTAATATGTGAAGGTA
          1 TGGCATGGTAATATGT-AAGGTA

        530 TTTAATGATT


Statistics
Matches: 48,  Mismatches: 4, Indels: 4
        0.86            0.07        0.07

Matches are distributed among these distances:
  30    3  0.06
  31   44  0.92
  32    1  0.02

ACGTcount: A:0.31, C:0.06, G:0.32, T:0.32


Consensus pattern (30 bp):   
TGGCATGGTAATATGTAAGGTAAGACGGTA
Done.