Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3965

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 370

Length: 617
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38


Found at i:408 original size:13 final size:13

Alignment explanation


    Indices: 390--415  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        380 GGTTTTGAAA

                         
        390 AAAAAAATGTTAT
          1 AAAAAAATGTTAT

                         
        403 AAAAAAATGTTAT
          1 AAAAAAATGTTAT

        416 TTTAGTTATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31


Consensus pattern (13 bp):   
AAAAAAATGTTAT

Found at i:439 original size:8 final size:8

Alignment explanation


    Indices: 421--454  Score: 59
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        411 GTTATTTTAG

                     
        421 TTATTTATT
          1 TTATTT-TT

                    
        430 TTATTTTT
          1 TTATTTTT

                    
        438 TTATTTTT
          1 TTATTTTT

                    
        446 TTATTTTT
          1 TTATTTTT

             
        454 T
          1 T

        455 AGTCGTTAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   8   19  0.76
   9    6  0.24

ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85


Consensus pattern (8 bp):   
TTATTTTT

Done.