Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4588

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 307

Length: 512
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35


Found at i:388 original size:21 final size:20

Alignment explanation


    Indices: 362--432  Score: 83
    Period size: 21  Copynumber: 3.4  Consensus size: 20

        352 TTTTGCTCTG

                                 
        362 CTCTGCTTCTCTCGCTGCAGC
          1 CTCTGCTTC-CTCGCTGCAGC

                                 
        383 CTCTGCTTCCTTCGCTGCAGC
          1 CTCTGCTTCC-TCGCTGCAGC

                                   
        404 CGT-TGCTTCCCTCGCTGTC-GC
          1 C-TCTGCTT-CCTCGCTG-CAGC

                    
        425 CTCTGCTT
          1 CTCTGCTT

        433 TAAGTTGTAG


Statistics
Matches: 45,  Mismatches: 0, Indels: 10
        0.82            0.00        0.18

Matches are distributed among these distances:
  20    2  0.04
  21   39  0.87
  22    4  0.09

ACGTcount: A:0.03, C:0.42, G:0.20, T:0.35


Consensus pattern (20 bp):   
CTCTGCTTCCTCGCTGCAGC
Done.