Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4341

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 328

Length: 547
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36


Found at i:510 original size:29 final size:29

Alignment explanation


    Indices: 463--520  Score: 89
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        453 GCAACCCATT

                          *              
        463 TTTAGTATCATATCGAAACGCTATTCCTA
          1 TTTAGTATCATATCAAAACGCTATTCCTA

                *        *               
        492 TTTATTATCATATTAAAACGCTATTCCTA
          1 TTTAGTATCATATCAAAACGCTATTCCTA

        521 ATAGAAGATA


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  29   26  1.00

ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41


Consensus pattern (29 bp):   
TTTAGTATCATATCAAAACGCTATTCCTA
Done.