Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold532
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 251211
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.23
Warning! 81347 characters in sequence are not A, C, G, or T
Found at i:4124 original size:5 final size:6
Alignment explanation
Indices: 4092--4135 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
4082 TGGTTTTCTC
* *
4092 AAAATG GAAATG AAAATG AAAATG AAAATA AAAATG AGAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG A
4136 TACATTTGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.66, C:0.00, G:0.18, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:8786 original size:26 final size:26
Alignment explanation
Indices: 8757--8918 Score: 81
Period size: 26 Copynumber: 6.5 Consensus size: 26
8747 TCCTCTCTCA
*
8757 AGCCATATAA-CAGGAATCTCACAAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
8783 AGCCATTAATCGGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* *
8809 AGCC--T-ATCAGGAAGCTTATC--CG
1 AGCCATTAATCAGGAAGCTCA-CAAAG
* * * * *
8831 GGCTA-TATACCAGGAAGCTCA-TAAT
1 AGCCATTA-ATCAGGAAGCTCACAAAG
* *
8856 AGCCA-TAATTAGGAAGTTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* ** * *
8881 AACTTTTAATTAGGAAGCTCACGAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
*
8907 AGCCTTTAATCA
1 AGCCATTAATCA
8919 AGAGCTCCGG
Statistics
Matches: 101, Mismatches: 26, Indels: 18
0.70 0.18 0.12
Matches are distributed among these distances:
22 3 0.03
23 12 0.12
24 12 0.12
25 23 0.23
26 51 0.50
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAG
Found at i:10066 original size:30 final size:31
Alignment explanation
Indices: 9996--10067 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 31
9986 ATGATGATAT
* *
9996 TTTTATTTT-CATTTTTATCATATTTTATTA
1 TTTTATTTTCCAATTTCATCATATTTTATTA
* *
10026 TTTCACTTTCCAATTTCATCAT-TTTCT-TTA
1 TTTTATTTTCCAATTTCATCATATTT-TATTA
10056 TTTTATTTTCCA
1 TTTTATTTTCCA
10068 TGGATGAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
30 23 0.68
31 11 0.32
ACGTcount: A:0.21, C:0.15, G:0.00, T:0.64
Consensus pattern (31 bp):
TTTTATTTTCCAATTTCATCATATTTTATTA
Found at i:12210 original size:16 final size:16
Alignment explanation
Indices: 12189--12224 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
12179 TTTGGTTCGC
12189 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
12205 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
12221 TGTA
1 TGTA
12225 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:20321 original size:23 final size:23
Alignment explanation
Indices: 20295--20340 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
20285 GATTTAAACG
*
20295 GTTGTTAAATTATGTTTTA-AATA
1 GTTGTT-AACTATGTTTTACAATA
*
20318 GTTGTTGACTATGTTTTACAATA
1 GTTGTTAACTATGTTTTACAATA
20341 TCATTATAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.50
Consensus pattern (23 bp):
GTTGTTAACTATGTTTTACAATA
Found at i:20578 original size:19 final size:20
Alignment explanation
Indices: 20538--20582 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
20528 AATAATTATT
*
20538 TTTA-ATATTTAAAATATGA
1 TTTATATATTTAAAATATAA
*
20557 TTTATATATTTAAATTA-AA
1 TTTATATATTTAAAATATAA
20576 TTT-TATA
1 TTTATATA
20583 AATAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 4 0.17
19 8 0.35
20 11 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
TTTATATATTTAAAATATAA
Found at i:20606 original size:31 final size:31
Alignment explanation
Indices: 20571--20673 Score: 75
Period size: 33 Copynumber: 3.2 Consensus size: 31
20561 TATATTTAAA
20571 TTAAATTTTATAAATAATTAATATTAATTGC
1 TTAAATTTTATAAATAATTAATATTAATTGC
* * * * **
20602 TTAAAAAAATTTA-AATTTTAATT-TTATATATTTAAA
1 TT---AAATTTTATAA--ATAATTAATAT-TAATT-GC
20638 TTAAATTTTATAAATAATTAATATTAATTGC
1 TTAAATTTTATAAATAATTAATATTAATTGC
20669 TTAAA
1 TTAAA
20674 AAAATTTAAA
Statistics
Matches: 51, Mismatches: 12, Indels: 18
0.63 0.15 0.22
Matches are distributed among these distances:
31 7 0.14
32 9 0.18
33 12 0.24
34 12 0.24
35 9 0.18
36 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (31 bp):
TTAAATTTTATAAATAATTAATATTAATTGC
Found at i:20612 original size:35 final size:35
Alignment explanation
Indices: 20573--20680 Score: 120
Period size: 35 Copynumber: 3.2 Consensus size: 35
20563 TATTTAAATT
20573 AAATTTTATAAATAATTAATATTAATTGCTTAAAA
1 AAATTTTATAAATAATTAATATTAATTGCTTAAAA
* * *
20608 AAA--TT-TAAAT-TTTAATTTTATATAT--TTAAATT
1 AAATTTTATAAATAATTAATATTA-AT-TGCTTAAA-A
20640 AAATTTTATAAATAATTAATATTAATTGCTTAAAA
1 AAATTTTATAAATAATTAATATTAATTGCTTAAAA
20675 AAATTT
1 AAATTT
20681 AAATTTTATA
Statistics
Matches: 58, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
31 13 0.22
32 10 0.17
33 3 0.05
34 3 0.05
35 16 0.28
36 13 0.22
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (35 bp):
AAATTTTATAAATAATTAATATTAATTGCTTAAAA
Found at i:20633 original size:67 final size:68
Alignment explanation
Indices: 20557--20698 Score: 277
Period size: 67 Copynumber: 2.1 Consensus size: 68
20547 TAAAATATGA
20557 TTTATATATTTAAATTAAATTTTATAAATAATTAATATTAATTGCTTAAAAAAATTTAAATTTTA
1 TTTATATATTTAAATTAAATTTTATAAATAATTAATATTAATTGCTTAAAAAAATTTAAATTTTA
20622 -AT
66 TAT
20624 TTTATATATTTAAATTAAATTTTATAAATAATTAATATTAATTGCTTAAAAAAATTTAAATTTTA
1 TTTATATATTTAAATTAAATTTTATAAATAATTAATATTAATTGCTTAAAAAAATTTAAATTTTA
20689 TAT
66 TAT
20692 TTTATAT
1 TTTATAT
20699 CTCAAATATT
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
67 65 0.88
68 9 0.12
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (68 bp):
TTTATATATTTAAATTAAATTTTATAAATAATTAATATTAATTGCTTAAAAAAATTTAAATTTTA
TAT
Found at i:20673 original size:36 final size:36
Alignment explanation
Indices: 20566--20673 Score: 122
Period size: 36 Copynumber: 3.1 Consensus size: 36
20556 ATTTATATAT
20566 TTAAATTAAATTTTATAAATAATTAATATTAATTGC
1 TTAAATTAAATTTTATAAATAATTAATATTAATTGC
* * *
20602 TTAAA--AAA-ATT-TAAAT-TTTAATTTTATATAT--
1 TTAAATTAAATTTTATAAATAATTAATATTA-AT-TGC
20633 TTAAATTAAATTTTATAAATAATTAATATTAATTGC
1 TTAAATTAAATTTTATAAATAATTAATATTAATTGC
20669 TTAAA
1 TTAAA
20674 AAAATTTAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
31 13 0.23
32 7 0.12
33 6 0.11
34 6 0.11
35 7 0.12
36 18 0.32
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (36 bp):
TTAAATTAAATTTTATAAATAATTAATATTAATTGC
Found at i:20684 original size:32 final size:32
Alignment explanation
Indices: 20581--20684 Score: 106
Period size: 31 Copynumber: 3.2 Consensus size: 32
20571 TTAAATTTTA
20581 TAAATAATTAATATTAATTGCTTAAAAAAATT
1 TAAATAATTAATATTAATTGCTTAAAAAAATT
* * *
20613 TAAAT-TTTAATTTTATATAT--TTAAATTAAATTTT
1 TAAATAATTAATATTA-AT-TGCTTAAA--AAA-ATT
20647 ATAAATAATTAATATTAATTGCTTAAAAAAATT
1 -TAAATAATTAATATTAATTGCTTAAAAAAATT
20680 TAAAT
1 TAAAT
20685 TTTATATTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
31 13 0.23
32 12 0.21
33 6 0.11
34 6 0.11
35 7 0.12
36 13 0.23
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (32 bp):
TAAATAATTAATATTAATTGCTTAAAAAAATT
Found at i:20715 original size:41 final size:42
Alignment explanation
Indices: 20670--20755 Score: 156
Period size: 41 Copynumber: 2.1 Consensus size: 42
20660 ATTAATTGCT
*
20670 TAAAAAAATTTAAATTTTATATTTTATATCTC-AAATATTAC
1 TAAAAAAATTTAAATTTTATATTTTATATATCAAAATATTAC
20711 TAAAAAAATTTAAATTTTATATTTTATATATCAAAATATTAC
1 TAAAAAAATTTAAATTTTATATTTTATATATCAAAATATTAC
20753 TAA
1 TAA
20756 TGAGTTAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 31 0.72
42 12 0.28
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (42 bp):
TAAAAAAATTTAAATTTTATATTTTATATATCAAAATATTAC
Found at i:26724 original size:22 final size:22
Alignment explanation
Indices: 26696--26752 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
26686 ATACTCATTT
26696 AATGGTATCGATAATTCTCATA
1 AATGGTATCGATAATTCTCATA
*
26718 AATGGTATTGATAATTCTCATA
1 AATGGTATCGATAATTCTCATA
*
26740 GATGGTATCGATA
1 AATGGTATCGATA
26753 CCGCTTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.37
Consensus pattern (22 bp):
AATGGTATCGATAATTCTCATA
Found at i:32513 original size:43 final size:43
Alignment explanation
Indices: 32449--32572 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 43
32439 AGGATTTCCG
*
32449 ATATGTGTTATCGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
1 ATATGT-TTA-CGTGTAAGACCACGTCTGGGAAGTTGGCATCGAT
* *
32494 TTATGTTTACGTGTAAGACC-CTGTCTGAGACAG-TGGCATCGAT
1 ATATGTTTACGTGTAAGACCAC-GTCTGGGA-AGTTGGCATCGAT
* * *
32537 ATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
1 ATATGTTTACGTGTAAGACCACGTCTGGGAAGTTGG
32573 GATTGTACGA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.03
43 55 0.82
44 5 0.07
45 5 0.07
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
ATATGTTTACGTGTAAGACCACGTCTGGGAAGTTGGCATCGAT
Found at i:38020 original size:14 final size:14
Alignment explanation
Indices: 38001--38042 Score: 84
Period size: 14 Copynumber: 3.0 Consensus size: 14
37991 TTTGTTTGGT
38001 GGAAAATATTTTCC
1 GGAAAATATTTTCC
38015 GGAAAATATTTTCC
1 GGAAAATATTTTCC
38029 GGAAAATATTTTCC
1 GGAAAATATTTTCC
38043 ACCTTTTCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
GGAAAATATTTTCC
Found at i:38272 original size:12 final size:12
Alignment explanation
Indices: 38257--38289 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
38247 TCGTTCTCCC
*
38257 TTCTCCCTTTCG
1 TTCTCCCTTTCA
38269 TTCTCCCTTTCA
1 TTCTCCCTTTCA
38281 TTCTCCCTT
1 TTCTCCCTT
38290 GATTTGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.03, C:0.42, G:0.03, T:0.52
Consensus pattern (12 bp):
TTCTCCCTTTCA
Found at i:56696 original size:19 final size:18
Alignment explanation
Indices: 56664--56707 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
56654 AATAGACCCT
*
56664 TAATGTTTAATTTAGTATA
1 TAAT-TTTAATTTAATATA
*
56683 TAATTTTAATTTTAATATT
1 TAATTTTAA-TTTAATATA
56702 TAATTT
1 TAATTT
56708 AGTATTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (18 bp):
TAATTTTAATTTAATATA
Found at i:62222 original size:6 final size:6
Alignment explanation
Indices: 62211--62239 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
62201 GCAGAGCAAT
62211 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
62240 TGCAATTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:62358 original size:150 final size:150
Alignment explanation
Indices: 62087--62359 Score: 483
Period size: 150 Copynumber: 1.8 Consensus size: 150
62077 TGTTCCAAGG
* *
62087 AAATGCAATTCAAAATGCTATCAGATTCGTGTTCTACCTGTTCTAAATAAAAAACATGTAAGTAG
1 AAATGCAATTCAAAATGCTATCAGACTCGTGTTCTACCTGTTCTAAATAAAAAACATGTAAGTAA
* * *
62152 TAGCTCTAAATTACCTCCACACATTTCATGCCCTATATTTTGGCTAAAAGCAGAGCAATAAAAAG
66 TAGCTCTAAAATACCCCCACACATTTCATACCCTATATTTTGGCTAAAAGCAGAGCAATAAAAAG
62217 AAAAAGAAAAAGAAAAAGAA
131 AAAAAGAAAAAGAAAAAGAA
62237 AAATGCAATTCAAAATGCTATCAGACTCGTGTTCTACCTGTTCTAAATAAAAAACATGTAAGTAA
1 AAATGCAATTCAAAATGCTATCAGACTCGTGTTCTACCTGTTCTAAATAAAAAACATGTAAGTAA
* *
62302 TAGTTCTAAAATACCCCCACACATTTCATATCCTATATTTTGGCTAAAAGCAGAGCAA
66 TAGCTCTAAAATACCCCCACACATTTCATACCCTATATTTTGGCTAAAAGCAGAGCAA
62360 AAACAAAAAT
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
150 116 1.00
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.27
Consensus pattern (150 bp):
AAATGCAATTCAAAATGCTATCAGACTCGTGTTCTACCTGTTCTAAATAAAAAACATGTAAGTAA
TAGCTCTAAAATACCCCCACACATTTCATACCCTATATTTTGGCTAAAAGCAGAGCAATAAAAAG
AAAAAGAAAAAGAAAAAGAA
Found at i:69416 original size:18 final size:19
Alignment explanation
Indices: 69393--69440 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
69383 TTCTAACAGT
69393 ATTTTATTTATATTTAA-A
1 ATTTTATTTATATTTAACA
*
69411 ATTTTA-ATATATTTAATCA
1 ATTTTATTTATATTTAA-CA
*
69430 TTTTTATTTAT
1 ATTTTATTTAT
69441 GTAACAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 9 0.38
18 6 0.25
19 6 0.25
20 3 0.12
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTTATTTATATTTAACA
Found at i:74490 original size:20 final size:22
Alignment explanation
Indices: 74465--74506 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
74455 TGCTCTTTTC
74465 TTTTTC-TTT-TTTGGAGCATA
1 TTTTTCATTTATTTGGAGCATA
*
74485 TTTTTCATTTATTTTGAGCATA
1 TTTTTCATTTATTTGGAGCATA
74507 AGTTTCTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 3 0.16
22 10 0.53
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.60
Consensus pattern (22 bp):
TTTTTCATTTATTTGGAGCATA
Found at i:74793 original size:348 final size:348
Alignment explanation
Indices: 74156--74847 Score: 1217
Period size: 348 Copynumber: 2.0 Consensus size: 348
74146 TTCATTTACA
*
74156 ATAAGTTTCAACAAGTTTCAGTTTGTAAAAGGAGACACTAAGGTCACACAGGACTTAGTGGCTTG
1 ATAAGTTTCAACAAGTTTCAGTTTATAAAAGGAGACACTAAGGTCACACAGGACTTAGTGGCTTG
* *
74221 TAACGTTCTGAGGCTTAGGTTGGTACAGATTCGAAGAAATTTTATCTTAAAACTGTTCAAGCACT
66 TAACATTCTGAGGCTTAGGTTGGTACAGATTCAAAGAAATTTTATCTTAAAACTGTTCAAGCACT
* *
74286 ATGAACAACATAACTCACGACATTGTTCCCAATTCCCCCCAATTGTGATCGTTTCATCTCACCGC
131 ATCAACAACATAACTCACGAAATTGTTCCCAATTCCCCCCAATTGTGATCGTTTCATCTCACCGC
*
74351 CTTATTTCTCCTTCTATCACCTTTCTTATCTCTCCAACAATGTGGAAGAGATGACTTGATATTAG
196 CTTATTTCTCCTTCTATCACATTTCTTATCTCTCCAACAATGTGGAAGAGATGACTTGATATTAG
74416 CTTATTTTTGTGCACTATGATTTTGAGGCATTAATGTTATGCTCTTTTCTTTTTCTT-TTTTGGA
261 CTTATTTTTGTGCACTATGATTTTGAGGCATTAATGTTATGCTCTTTTCTTTTTCTTATTTT-GA
*
74480 GCATATTTTTCATTTATTTTGAGC
325 GCATATTGTTCATTTATTTTGAGC
* * * *
74504 ATAAGTTTCTACAAGTTTCTGTTTATAAAAGGCGACACTAAGGTCACATAGGACTTAGTGGCTTG
1 ATAAGTTTCAACAAGTTTCAGTTTATAAAAGGAGACACTAAGGTCACACAGGACTTAGTGGCTTG
74569 TAACATTCTGAGGCTTAGGTTGGTACAGATTCAAAGAAATTTTATCTTAAAA-TGGTTCAAGCAC
66 TAACATTCTGAGGCTTAGGTTGGTACAGATTCAAAGAAATTTTATCTTAAAACT-GTTCAAGCAC
* *
74633 TATCAACAACATAACTCACGAAATTGTTCCCAATTTCCCCCAATTGTGATCGTTTCATCTCACCT
130 TATCAACAACATAACTCACGAAATTGTTCCCAATTCCCCCCAATTGTGATCGTTTCATCTCACCG
*
74698 CCTTATTTCTCCTTCTATCACATTTCTTATCTCTCCAACAATGTGGAAGAGCTGACTTGATATTA
195 CCTTATTTCTCCTTCTATCACATTTCTTATCTCTCCAACAATGTGGAAGAGATGACTTGATATTA
74763 GCTTATTTTTGTGCACTATGATTTTGAGGCATTAATGTTATGCTCTTTTCTTTTTCTTATTTTGA
260 GCTTATTTTTGTGCACTATGATTTTGAGGCATTAATGTTATGCTCTTTTCTTTTTCTTATTTTGA
*
74828 GCATATTGTTCATTTTTTTT
325 GCATATTGTTCATTTATTTT
74848 CTTTTCTCTC
Statistics
Matches: 327, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
347 1 0.00
348 322 0.98
349 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (348 bp):
ATAAGTTTCAACAAGTTTCAGTTTATAAAAGGAGACACTAAGGTCACACAGGACTTAGTGGCTTG
TAACATTCTGAGGCTTAGGTTGGTACAGATTCAAAGAAATTTTATCTTAAAACTGTTCAAGCACT
ATCAACAACATAACTCACGAAATTGTTCCCAATTCCCCCCAATTGTGATCGTTTCATCTCACCGC
CTTATTTCTCCTTCTATCACATTTCTTATCTCTCCAACAATGTGGAAGAGATGACTTGATATTAG
CTTATTTTTGTGCACTATGATTTTGAGGCATTAATGTTATGCTCTTTTCTTTTTCTTATTTTGAG
CATATTGTTCATTTATTTTGAGC
Found at i:75624 original size:2 final size:2
Alignment explanation
Indices: 75619--75651 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
75609 AAAGACAAAA
75619 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
75652 AATAAACATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:78946 original size:3 final size:3
Alignment explanation
Indices: 78938--78980 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
78928 AATTGAATTG
* *
78938 TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTC TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
78981 ATTTATGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:83130 original size:22 final size:21
Alignment explanation
Indices: 83094--83160 Score: 79
Period size: 19 Copynumber: 3.3 Consensus size: 21
83084 TCAATGCAAA
*
83094 AAAAAAATAA-TAAACAAAAT
1 AAAAAAATAACAAAACAAAAT
83114 AATAAAAATAACAAAACAAAA-
1 AA-AAAAATAACAAAACAAAAT
*
83135 AAACAAA-AACAAAA-AAAAT
1 AAAAAAATAACAAAACAAAAT
83154 AAAAAAA
1 AAAAAAA
83161 AGGAAAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 4 0.10
19 13 0.32
20 6 0.15
21 10 0.24
22 8 0.20
ACGTcount: A:0.84, C:0.07, G:0.00, T:0.09
Consensus pattern (21 bp):
AAAAAAATAACAAAACAAAAT
Found at i:83147 original size:19 final size:18
Alignment explanation
Indices: 83090--83161 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
83080 AGATTCAATG
*
83090 CAAAAAAAA-AATAATAAA
1 CAAAAAAAATAA-AAAAAA
* *
83108 C-AAAATAATAAAAATAA
1 CAAAAAAAATAAAAAAAA
83125 CAAAACAAAA-AAACAAAAA
1 CAAAA-AAAATAAA-AAAAA
83144 CAAAAAAAATAAAAAAAA
1 CAAAAAAAATAAAAAAAA
83162 GGAAAAAAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
17 11 0.25
18 18 0.41
19 15 0.34
ACGTcount: A:0.83, C:0.08, G:0.00, T:0.08
Consensus pattern (18 bp):
CAAAAAAAATAAAAAAAA
Found at i:83157 original size:14 final size:14
Alignment explanation
Indices: 83117--83151 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
83107 ACAAAATAAT
83117 AAAAATAAC-AAAAC
1 AAAAA-AACAAAAAC
83131 AAAAAAACAAAAAC
1 AAAAAAACAAAAAC
83145 AAAAAAA
1 AAAAAAA
83152 ATAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 3 0.15
14 17 0.85
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (14 bp):
AAAAAAACAAAAAC
Found at i:83161 original size:9 final size:9
Alignment explanation
Indices: 83091--83161 Score: 54
Period size: 9 Copynumber: 7.6 Consensus size: 9
83081 GATTCAATGC
83091 AAAAA-AAA
1 AAAAATAAA
*
83099 AATAATAAA
1 AAAAATAAA
* *
83108 CAAAATAAT
1 AAAAATAAA
83117 AAAAATAACAA
1 AAAAAT-A-AA
*
83128 AACAAAAAAA
1 AA-AAATAAA
*
83138 CAAAAACAAA
1 -AAAAATAAA
83148 AAAAATAAA
1 AAAAATAAA
83157 AAAAA
1 AAAAA
83162 GGAAAAAAGA
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
8 4 0.08
9 27 0.55
10 9 0.18
11 6 0.12
12 3 0.06
ACGTcount: A:0.85, C:0.07, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAATAAA
Found at i:83735 original size:8 final size:7
Alignment explanation
Indices: 83705--83737 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
83695 AAAGATGCGA
83705 AAAAATG
1 AAAAATG
83712 -AAAATG
1 AAAAATG
83718 AAAAATG
1 AAAAATG
83725 AAAAATGG
1 AAAAAT-G
83733 AAAAA
1 AAAAA
83738 GTAGAAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 12 0.50
8 6 0.25
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:85867 original size:50 final size:49
Alignment explanation
Indices: 85127--85868 Score: 171
Period size: 50 Copynumber: 14.9 Consensus size: 49
85117 CCTATCTCTT
* *
85127 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGAATCT-TACCTCC
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTGT-TCTCC
* ** * * ** * * * *
85176 CTGGCGGTGCAATGGAACAGATTGAAGCTACGACAGCGGATCTGGTT-TCCC
1 C-GACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCT-GTTCT-CC
* * *
85227 CGACATTACGATTTAAAAGATTGAAGCCATAACGACGGATCT-TACCTCC
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTGT-TCTCC
** * * ** * * * *
85276 TTA-GTGGTGC-AGTGGAACAGATTGAAGCTACGACAGCGGATCTGGTT-TCCC
1 CGACAT--TACGA-TTTAAAAGATTGAAGCCACAACGGCGGATCT-GTTCT-CC
* * *
85327 CGACATTACGATTTAAAAGATTGAAGCCATAACGACGGATCT-TACCTCC
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTGT-TCTCC
** * * ** * * * *
85376 TTA-GTGGTGC-AGTGGAACAGATTGAAGCTACGACAGCGGATCTGGTT-TCCC
1 CGACAT--TACGA-TTTAAAAGATTGAAGCCACAACGGCGGATCT-GTTCT-CC
* * *
85427 CGACATTACGATTTAAAAGATTGAAGCCATAACGACGGATCT-TACCTCC
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTGT-TCTCC
** * * ** * * * *
85476 TTA-GTGGTGC-AGTGGAACAGATTGAAGCTACGACAGCGGATCTGGTT-TCCC
1 CGACAT--TACGA-TTTAAAAGATTGAAGCCACAACGGCGGATCT-GTTCT-CC
*
85527 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCT-TACTTCC
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTGTTC-TCC
* * ** ** * * *
85576 TTGACGA-TGC-AGTGGAACTGATTGAAGCTACGACGGTGGATCTAGTTCTCC
1 -CGAC-ATTACGA-TTTAAAAGATTGAAGCCACAACGGCGGATCT-GTTCTCC
* * * *
85627 CGACATCACGATTTAAAAGATTGAAGCCATAACGACGGATCT-TACCTCC
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTGT-TCTCC
** * * ** * * * *
85676 TTA-GTGGTGC-AGTGGAACAGATTGAAGCTACGACAGCGGATCTGGTT-TCCC
1 CGACAT--TACGA-TTTAAAAGATTGAAGCCACAACGGCGGATCT-GTTCT-CC
* *
85727 CGACATTACAATTTAAAAGATTGAAGCCACAACAGCGGATCT-TATCTCC
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTGT-TCTCC
* * ** * ** * * * * *
85776 TTGGCGGTGCAGA-GGAACAGATTGAAGCTACGATGGTGGATCTGGTTCTCC
1 -CGACATTAC-GATTTAAAAGATTGAAGCCACAACGGCGGATCT-GTTCTCC
*
85827 CAACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCT
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCT
85869 TACCTCCTTG
Statistics
Matches: 458, Mismatches: 176, Indels: 117
0.61 0.23 0.16
Matches are distributed among these distances:
48 10 0.02
49 28 0.06
50 378 0.83
51 30 0.07
52 12 0.03
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (49 bp):
CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTGTTCTCC
Found at i:86035 original size:100 final size:100
Alignment explanation
Indices: 85127--86033 Score: 1223
Period size: 100 Copynumber: 9.1 Consensus size: 100
85117 CCTATCTCTT
* * * * *
85127 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGCAATGGA
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
85192 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
66 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
* *
85227 CGACATTACGATTTAAAAGATTGAAGCCATAACGACGGATCTTACCTCCTTAGTGGTGCAGTGGA
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
85292 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
66 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
* *
85327 CGACATTACGATTTAAAAGATTGAAGCCATAACGACGGATCTTACCTCCTTAGTGGTGCAGTGGA
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
85392 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
66 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
* *
85427 CGACATTACGATTTAAAAGATTGAAGCCATAACGACGGATCTTACCTCCTTAGTGGTGCAGTGGA
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
85492 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
66 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
* * *
85527 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTT-GACGATGCAGTGG
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAG-TGGTGCAGTGG
* * * *
85591 AACTGATTGAAGCTACGACGGTGGATCTAG-TTCTCC
65 AACAGATTGAAGCTACGACAGCGGATCTGGTTTC-CC
* * *
85627 CGACATCACGATTTAAAAGATTGAAGCCATAACGACGGATCTTACCTCCTTAGTGGTGCAGTGGA
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
85692 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
66 ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
* * * * * *
85727 CGACATTACAATTTAAAAGATTGAAGCCACAACAGCGGATCTTATCTCCTTGGCGGTGCAGAGGA
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
** *
85792 ACAGATTGAAGCTACGATGGTGGATCTGG-TTCTCC
66 ACAGATTGAAGCTACGACAGCGGATCTGGTTTC-CC
* * * * *
85827 CAACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTGGCGATGCAGCGGA
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
* ** **
85892 ACAGATT-ATAACTACGATGGCATATCTGGTTTCCC
66 ACAGATTGA-AGCTACGACAGCGGATCTGGTTTCCC
* * * * * * * * * * *
85927 CTACATTGCGATCTAAAAGATTGAAGTCACAAAGGCGAATCTTACTTCCCTGGTAGTGTAGTGGA
1 CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
* * * *
85992 ATAGATTGAAG-TCATGAC-GACGAATCTTGTTTCCC
66 ACAGATTGAAGCT-ACGACAG-CGGATCTGGTTTCCC
86027 CGACATT
1 CGACATT
86034 GCAGTTAAAT
Statistics
Matches: 728, Mismatches: 69, Indels: 20
0.89 0.08 0.02
Matches are distributed among these distances:
99 10 0.01
100 710 0.98
101 8 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (100 bp):
CGACATTACGATTTAAAAGATTGAAGCCACAACGGCGGATCTTACCTCCTTAGTGGTGCAGTGGA
ACAGATTGAAGCTACGACAGCGGATCTGGTTTCCC
Found at i:86971 original size:20 final size:22
Alignment explanation
Indices: 86946--86987 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86936 TGCTCTTTTC
86946 TTTTTC-TTT-TTTGGAGCATA
1 TTTTTCATTTATTTGGAGCATA
*
86966 TTTTTCATTTATTTTGAGCATA
1 TTTTTCATTTATTTGGAGCATA
86988 AGTTTCTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 3 0.16
22 10 0.53
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.60
Consensus pattern (22 bp):
TTTTTCATTTATTTGGAGCATA
Found at i:88955 original size:2 final size:2
Alignment explanation
Indices: 88948--88978 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
88938 TTAAATAATG
88948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
88979 AAACTTAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:89530 original size:12 final size:12
Alignment explanation
Indices: 89512--89589 Score: 61
Period size: 12 Copynumber: 6.4 Consensus size: 12
89502 TTTTAATTAC
89512 CAAGTTTTTTAT
1 CAAGTTTTTTAT
* **
89524 TAAGTTTTGCAT
1 CAAGTTTTTTAT
89536 CAAGTTCTTTT-T
1 CAAGTT-TTTTAT
* *
89548 -AAGCTTTTCAT
1 CAAGTTTTTTAT
89559 CAAGTGTTTTTAAT
1 CAAGT-TTTTT-AT
*
89573 CAAGTTTTTAAT
1 CAAGTTTTTTAT
89585 CAAGT
1 CAAGT
89590 CATAAATGTA
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
10 3 0.06
11 5 0.10
12 25 0.50
13 10 0.20
14 7 0.14
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.50
Consensus pattern (12 bp):
CAAGTTTTTTAT
Found at i:89571 original size:22 final size:23
Alignment explanation
Indices: 89512--89571 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
89502 TTTTAATTAC
*
89512 CAAGTTTTTTATTAAGTTTTGCAT
1 CAAGTTCTTT-TTAAGTTTTGCAT
89536 CAAGTTCTTTTTAAGCTTTT-CAT
1 CAAGTTCTTTTTAAG-TTTTGCAT
*
89559 CAAG-TGTTTTTAA
1 CAAGTTCTTTTTAA
89572 TCAAGTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 8 0.24
23 12 0.36
24 13 0.39
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52
Consensus pattern (23 bp):
CAAGTTCTTTTTAAGTTTTGCAT
Found at i:91664 original size:16 final size:16
Alignment explanation
Indices: 91643--91674 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91633 ATATATCAAG
91643 AACATAAGAATTTATT
1 AACATAAGAATTTATT
*
91659 AACATAAGACTTTATT
1 AACATAAGAATTTATT
91675 TAAGAAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (16 bp):
AACATAAGAATTTATT
Found at i:94000 original size:22 final size:21
Alignment explanation
Indices: 93966--94006 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
93956 AACATTTGTT
93966 TATTTTAGAAAAAAACTTAGTC
1 TATTTTAG-AAAAAACTTAGTC
* *
93988 TATTTTTGGAAAAACTTAG
1 TATTTTAGAAAAAACTTAG
94007 CGTTTTATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.39
Consensus pattern (21 bp):
TATTTTAGAAAAAACTTAGTC
Found at i:94307 original size:19 final size:18
Alignment explanation
Indices: 94265--94307 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
94255 TACAATTTTT
**
94265 AAATAATAGGAACTATAA
1 AAATAATAGGAAAAATAA
94283 ATAATAATAGGTAAAAATAA
1 A-AATAATAGG-AAAAATAA
94303 AAATA
1 AAATA
94308 TTAATAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 13 0.62
20 7 0.33
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.23
Consensus pattern (18 bp):
AAATAATAGGAAAAATAA
Found at i:99882 original size:7 final size:7
Alignment explanation
Indices: 99844--99876 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
99834 AGCGATGTGA
99844 AAAAATG
1 AAAAATG
99851 AAAAGAT-
1 AAAA-ATG
99858 AAAAATG
1 AAAAATG
99865 AAAAATG
1 AAAAATG
99872 AAAAA
1 AAAAA
99877 GTAAAATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 2 0.08
7 20 0.83
8 2 0.08
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:126139 original size:44 final size:44
Alignment explanation
Indices: 126081--126687 Score: 203
Period size: 44 Copynumber: 13.8 Consensus size: 44
126071 CCAATAATTC
* * *
126081 TATCTCCCTGGGCAGCAGTGGAATATATTGATGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * ** * *
126125 TATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * * *
126169 TACCTCCCTGAGGTTA-CGGT-GAAGTACATTGAGGCCAGTA-A-TTC-
1 TATCTCCCT-AGG-CAGCAGTGGAA-TAGATTGAAG--ATTACAGATCT
126213 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * ** * *
126257 TATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * * *
126301 TACCTCCCTGAGGTTA-CGGT-GAAGTACATTGAGGCCAGTA-A-TTC-
1 TATCTCCCT-AGG-CAGCAGTGGAA-TAGATTGAAG--ATTACAGATCT
* * *
126345 TATCTCCCT-GAGCAACAATGGAATATATTGAAGATTACAGATCT
1 TATCTCCCTAG-GCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * ** ** * **** *
126389 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * * * *
126433 TACCTCTCTGAGGTTA-CAGTGGAGTACATTGAGGCCAGTA-A-TTC-
1 TATCTCCCT-AGG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCT
* *
126477 TATCTCCCTGGGCAGGAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * ** * *
126521 TATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * *
126565 TA-CATCCCTGAGGTTA-CAGTGGAGTACATTGAGGCCAGTA-A-TTC-
1 TATC-TCCCT-AGG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCT
* *
126609 TATCTCCCT-GAGCAACAGTGGAATAGATTGAATATTACAGATCT
1 TATCTCCCTAG-GCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * *
126653 TATCTCCCTAGACAGTAGTGGAGTAGATCGAAGAT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGAT
126688 GGTAGATTTT
Statistics
Matches: 387, Mismatches: 134, Indels: 84
0.64 0.22 0.14
Matches are distributed among these distances:
41 12 0.03
42 10 0.03
43 65 0.17
44 232 0.60
45 60 0.16
46 4 0.01
47 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
Found at i:126211 original size:132 final size:132
Alignment explanation
Indices: 126049--126774 Score: 1110
Period size: 132 Copynumber: 5.5 Consensus size: 132
126039 TCTCTCTAAA
* * * *
126049 GTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGGGCAGCAGTGGAATATATTGATG
1 GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAG
126114 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTG
66 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTG
126179 AG
131 AG
* * *
126181 GTTACGGTGAAGTACATTGAGGCCAGTAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAG
126246 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTG
66 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTG
126311 AG
131 AG
* * * * * *
126313 GTTACGGTGAAGTACATTGAGGCCAGTAATTCTATCTCCCTGAGCAACAATGGAATATATTGAAG
1 GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAG
* * * * * *
126378 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGGATTTTACCTCTCTG
66 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTG
126443 AG
131 AG
*
126445 GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGGGCAGGAGTGGAATAGATTGAAG
1 GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAG
*
126510 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACATCCCTG
66 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTG
126575 AG
131 AG
* * *
126577 GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGAGCAACAGTGGAATAGATTGAAT
1 GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAG
* ** *
126642 ATTACAGATCTTATCTCCCTAGACAGTAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCTCTG
66 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTG
*
126707 AT
131 AG
* * * * * * * * *
126709 GTTACAGTGGAGTATATTGAAGCTAGTAATTCTAACTCTCTGGTCGGCAGTGGAATCGATCGAAG
1 GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAG
126774 A
66 A
126775 AAGCAGATCT
Statistics
Matches: 540, Mismatches: 54, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 540 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (132 bp):
GTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAG
ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTG
AG
Found at i:126829 original size:44 final size:44
Alignment explanation
Indices: 126766--126923 Score: 219
Period size: 44 Copynumber: 3.6 Consensus size: 44
126756 CAGTGGAATC
126766 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGAGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGAGTGAAGTA
* * * *
126810 GATCGAATAAAACAGATCTTGTCTTCATGTATTGGCGTGGAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGAGTGAAGTA
* * *
126854 TATCGAAGAAAGCATATATTGTCTTCATGTATTGGCA-TGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-AGTGAAGTA
* *
126898 GATCAAAGAGAGCAGATCTTGTCTTC
1 GATCGAAGAAAGCAGATCTTGTCTTC
126924 CCGTACTGGT
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 97 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (44 bp):
GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGAGTGAAGTA
Found at i:128397 original size:3 final size:3
Alignment explanation
Indices: 128391--128422 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
128381 ACTATTGTTG
128391 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
128423 TATTCATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:133597 original size:30 final size:31
Alignment explanation
Indices: 133534--133598 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
133524 CAAAATAGTT
* * *
133534 ACTGAATTATTTGAAAGTTTTCATTTTAGTC
1 ACTGAAATATTAGAAAGTTTTCATTTAAGTC
*
133565 ACTGAAATATTAGAAAGTTTTTA-TTAAGTC
1 ACTGAAATATTAGAAAGTTTTCATTTAAGTC
133595 ACTG
1 ACTG
133599 GACTGTTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 10 0.33
31 20 0.67
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (31 bp):
ACTGAAATATTAGAAAGTTTTCATTTAAGTC
Found at i:134588 original size:52 final size:52
Alignment explanation
Indices: 134525--134636 Score: 206
Period size: 52 Copynumber: 2.1 Consensus size: 52
134515 TTGAAATAGG
134525 TTTAAATTAATTTGCATACTAACCATGATTAAAATTGTTTCAATTTCTTTAC
1 TTTAAATTAATTTGCATACTAACCATGATTAAAATTGTTTCAATTTCTTTAC
*
134577 TTTAAATTAATTTGCATACTAACCATGCTTAAAATTGTTTCAATTTCTTTAC
1 TTTAAATTAATTTGCATACTAACCATGATTAAAATTGTTTCAATTTCTTTAC
134629 TTATAAAT
1 TT-TAAAT
134637 ATTTAAAAAT
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 53 0.91
53 5 0.09
ACGTcount: A:0.35, C:0.13, G:0.05, T:0.46
Consensus pattern (52 bp):
TTTAAATTAATTTGCATACTAACCATGATTAAAATTGTTTCAATTTCTTTAC
Found at i:136795 original size:14 final size:15
Alignment explanation
Indices: 136769--136797 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
136759 TTTGTTCATC
136769 TTTAAATATTAAATA
1 TTTAAATATTAAATA
136784 TTTAAA-ATTAAATA
1 TTTAAATATTAAATA
136798 GTAAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAAATATTAAATA
Found at i:137160 original size:394 final size:395
Alignment explanation
Indices: 136418--137209 Score: 1577
Period size: 394 Copynumber: 2.0 Consensus size: 395
136408 AATTAAAATA
136418 TTTTATTTAAAATCAAATTATTTTTATAAAAAATAAACACTGAGATTAATAGATAACAATTAAAC
1 TTTTATTTAAAATCAAATTATTTTTATAAAAAATAAACACTGAGATTAATAGATAACAATTAAAC
136483 TAAAATTTTGAATCAAATGATATAAAGAATAAAAGATTGCCCCTTGTATTGGCAAAATACAGTAC
66 TAAAATTTTGAATCAAATGATATAAAGAATAAAAGATTGCCCCTTGTATTGGCAAAATACAGTAC
136548 ATTGATAAATGCGTATAGGGAAATTTTTCTTTGTTTCCATCATAATTCTAATCATTGAAATAATA
131 ATTGATAAATGCGTATAGGGAAATTTTTCTTTGTTTCCATCATAATTCTAATCATTGAAATAATA
136613 CATATAGTTATGGTCTGAATCAAGTAAAAACTTGCATTTTGCTATCTAAACTTTGATTATAGCCA
196 CATATAGTTATGGTCTGAATCAAGTAAAAACTTGCATTTTGCTATCTAAACTTTGATTATAGCCA
136678 CACTTAGAAGAAATAAAAATAAATTTGTAGTTGGGACTACGATTCCTCTCCCCACGTGCTGCATA
261 CACTTAGAAGAAATAAAAATAAATTTGTAGTTGGGACTACGATTCCTCTCCCCACGTGCTGCATA
136743 CTGCATACTCTGGATGTTTGTTCATCTTTAAATATTAAATATTTAAAATTAAATAGTAAAAATAA
326 CTGCATACTCTGGATGTTTGTTCATCTTTAAATATTAAATATTTAAAATTAAATAGTAAAAATAA
136808 TAATT
391 TAATT
136813 TTTTATTTAAAAT-AAATTATTTTTATAAAAAATAAACACTGAGATTAATAGATAACAATTAAAC
1 TTTTATTTAAAATCAAATTATTTTTATAAAAAATAAACACTGAGATTAATAGATAACAATTAAAC
136877 TAAAATTTTGAATCAAATGATATAAAGAATAAAAGATTGCCCCTTGTATTGGCAAAATACAGTAC
66 TAAAATTTTGAATCAAATGATATAAAGAATAAAAGATTGCCCCTTGTATTGGCAAAATACAGTAC
136942 ATTGATAAATGCGTATAGGGAAATTTTTCTTTGTTTCCATCATAATTCTAATCATTGAAATAATA
131 ATTGATAAATGCGTATAGGGAAATTTTTCTTTGTTTCCATCATAATTCTAATCATTGAAATAATA
137007 CATATAGTTATGGTCTGAATCAAGTAAAAACTTGCATTTTGCTATCTAAACTTTGATTATAGCCA
196 CATATAGTTATGGTCTGAATCAAGTAAAAACTTGCATTTTGCTATCTAAACTTTGATTATAGCCA
137072 CACTTAGAAGAAATAAAAATAAATTTGTAGTTGGGACTACGATTCCTCTCCCCACGTGCTGCATA
261 CACTTAGAAGAAATAAAAATAAATTTGTAGTTGGGACTACGATTCCTCTCCCCACGTGCTGCATA
137137 CTGCATACTCTGGATGTTTGTTCATCTTTAAATATTAAATATTTAAAATTAAATAGTAAAAATAA
326 CTGCATACTCTGGATGTTTGTTCATCTTTAAATATTAAATATTTAAAATTAAATAGTAAAAATAA
137202 TAATT
391 TAATT
137207 TTT
1 TTT
137210 GAGCCAAATG
Statistics
Matches: 397, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
394 384 0.97
395 13 0.03
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (395 bp):
TTTTATTTAAAATCAAATTATTTTTATAAAAAATAAACACTGAGATTAATAGATAACAATTAAAC
TAAAATTTTGAATCAAATGATATAAAGAATAAAAGATTGCCCCTTGTATTGGCAAAATACAGTAC
ATTGATAAATGCGTATAGGGAAATTTTTCTTTGTTTCCATCATAATTCTAATCATTGAAATAATA
CATATAGTTATGGTCTGAATCAAGTAAAAACTTGCATTTTGCTATCTAAACTTTGATTATAGCCA
CACTTAGAAGAAATAAAAATAAATTTGTAGTTGGGACTACGATTCCTCTCCCCACGTGCTGCATA
CTGCATACTCTGGATGTTTGTTCATCTTTAAATATTAAATATTTAAAATTAAATAGTAAAAATAA
TAATT
Found at i:137189 original size:14 final size:15
Alignment explanation
Indices: 137163--137191 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
137153 TTTGTTCATC
137163 TTTAAATATTAAATA
1 TTTAAATATTAAATA
137178 TTTAAA-ATTAAATA
1 TTTAAATATTAAATA
137192 GTAAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAAATATTAAATA
Found at i:139714 original size:19 final size:19
Alignment explanation
Indices: 139692--139738 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
139682 ATAGGTGAAG
*
139692 TAAATAAAAATA-ATAATAA
1 TAAATAAAAA-ACAGAATAA
*
139711 TAAATAAAAAACAGAATCA
1 TAAATAAAAAACAGAATAA
139730 TAAATAAAA
1 TAAATAAAA
139739 CTGCCTGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 1 0.04
19 24 0.96
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
TAAATAAAAAACAGAATAA
Found at i:145238 original size:15 final size:16
Alignment explanation
Indices: 145197--145238 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
145187 TCTGTACTAC
*
145197 TCTGATATGAATTTGT
1 TCTGATATAAATTTGT
145213 TCTG-T-TAAATTTGT
1 TCTGATATAAATTTGT
145227 T-TGATATAAATT
1 TCTGATATAAATT
145239 AATTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 2 0.09
14 10 0.43
15 7 0.30
16 4 0.17
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.52
Consensus pattern (16 bp):
TCTGATATAAATTTGT
Found at i:148102 original size:37 final size:38
Alignment explanation
Indices: 148011--148116 Score: 124
Period size: 41 Copynumber: 2.7 Consensus size: 38
148001 AATTCGAAGT
* * *
148011 AGTAAATTGACAACCAGTGTCTCATTGAATAAATCCGA
1 AGTAAATTGGCACCCAGTGTCTCATCGAATAAATCCGA
**
148049 AGTAATAAATTGGCACCCAGTGTCTCATCGGTTAAA-CCGA
1 AG---TAAATTGGCACCCAGTGTCTCATCGAATAAATCCGA
*
148089 AGTAAATTGGCACCCAGTGCCTCATCGA
1 AGTAAATTGGCACCCAGTGTCTCATCGA
148117 CTCGAAGTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
37 24 0.41
38 2 0.03
40 6 0.10
41 26 0.45
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (38 bp):
AGTAAATTGGCACCCAGTGTCTCATCGAATAAATCCGA
Found at i:152352 original size:26 final size:26
Alignment explanation
Indices: 152323--152373 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
152313 TAAATATATA
152323 TATTTTTAATCAAATATATATATTTT
1 TATTTTTAATCAAATATATATATTTT
152349 TATTTTTAATCAAATATATATATTT
1 TATTTTTAATCAAATATATATATTT
152374 AATATGGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (26 bp):
TATTTTTAATCAAATATATATATTTT
Found at i:152951 original size:40 final size:40
Alignment explanation
Indices: 152900--152975 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
152890 GCCAATTTTG
*
152900 TTAATCTTGATTAAGGTAAGTTAATTA-AAGTTTAAATTAA
1 TTAATCTTGATTAA-GTAAGTTAATTATAAGTATAAATTAA
* * *
152940 TTAATTTTGATTAATTAATTTAATTATAAGTATAAA
1 TTAATCTTGATTAAGTAAGTTAATTATAAGTATAAA
152976 AGTTAAAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 10 0.32
40 21 0.68
ACGTcount: A:0.43, C:0.01, G:0.09, T:0.46
Consensus pattern (40 bp):
TTAATCTTGATTAAGTAAGTTAATTATAAGTATAAATTAA
Found at i:153635 original size:25 final size:26
Alignment explanation
Indices: 153583--153640 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
153573 TAAAATAAAT
*
153583 TTAATATTTATCTAGATAATATTTTA
1 TTAATTTTTATCTAGATAATATTTTA
153609 TTAATTTTTATCTAGAT-ATATTTTA
1 TTAATTTTTATCTAGATAATATTTTA
153634 TTAATTT
1 TTAATTT
153641 AATATTAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 15 0.48
26 16 0.52
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (26 bp):
TTAATTTTTATCTAGATAATATTTTA
Found at i:154886 original size:6 final size:6
Alignment explanation
Indices: 154875--154908 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
154865 ACATCTACTT
154875 CAAACA CAAACA CAAACA CAAACA CAAACA CAAA
1 CAAACA CAAACA CAAACA CAAACA CAAACA CAAA
154909 TAAATCTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAACA
Found at i:155468 original size:120 final size:121
Alignment explanation
Indices: 155333--155573 Score: 475
Period size: 120 Copynumber: 2.0 Consensus size: 121
155323 ATAACGTATT
155333 CTATTTTTAAATTCAAAATATTATTATATTTCAAATAATTTTATACATATATTAAACAGGAAAAC
1 CTATTTTTAAATTCAAAATATTATTATATTTCAAATAATTTTATACATATATTAAACAGGAAAAC
155398 TAGCTTTTAACCTAGAGTGATAAATGTAATTTTTAGTTCAAACCTCAAGGGTATAA
66 TAGCTTTTAACCTAGAGTGATAAATGTAATTTTTAGTTCAAACCTCAAGGGTATAA
155454 CTATTTTT-AATTCAAAATATTATTATATTTCAAATAATTTTATACATATATTAAACAGGAAAAC
1 CTATTTTTAAATTCAAAATATTATTATATTTCAAATAATTTTATACATATATTAAACAGGAAAAC
155518 TAGCTTTTAACCTAGAGTGATAAATGTAATTTTTAGTTCAAACCTCAAGGGTATAA
66 TAGCTTTTAACCTAGAGTGATAAATGTAATTTTTAGTTCAAACCTCAAGGGTATAA
155574 ATGTCTTTTA
Statistics
Matches: 120, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
120 112 0.93
121 8 0.07
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (121 bp):
CTATTTTTAAATTCAAAATATTATTATATTTCAAATAATTTTATACATATATTAAACAGGAAAAC
TAGCTTTTAACCTAGAGTGATAAATGTAATTTTTAGTTCAAACCTCAAGGGTATAA
Found at i:168574 original size:136 final size:138
Alignment explanation
Indices: 168341--168587 Score: 320
Period size: 136 Copynumber: 1.8 Consensus size: 138
168331 CACATAACCT
* * * *
168341 GTCGGTCAGAATGCAAGCTACACGATGCTGATCATACAAGATGTCGAGTATCTGCAACTAATGCT
1 GTCGGTCAGAACGCAAGCTACACGATGCTGATCACACAAGATGTCAAGTATCCGCAACTAATGCT
* **
168406 AGACCTCAGCCATCGGTAGGACATTCAAGACAA-CAACCGAAACATATTAACCTGGGTCTACTCA
66 AGAACTCAGCCATAAGTAGGACATTCAAGACAAGCAACCGAAACATATTAACCTGGGTCTACTCA
168470 CACAAGCA
131 CACAAGCA
* * * * * *
168478 GTCGGTCAGAACG-TAGCTACACGGTGCTGCTCACACAAGCTGTTAAGTATCCGCAA-TAAATGT
1 GTCGGTCAGAACGCAAGCTACACGATGCTGATCACACAAGATGTCAAGTATCCGCAACT-AATGC
* * *
168541 TAGAACTTAGCCATAAGTAGGACATTCAGGACAAGCACCCGAAACAT
65 TAGAACTCAGCCATAAGTAGGACATTCAAGACAAGCAACCGAAACAT
168588 GGTAACCCTA
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
135 1 0.01
136 68 0.74
137 23 0.25
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.21
Consensus pattern (138 bp):
GTCGGTCAGAACGCAAGCTACACGATGCTGATCACACAAGATGTCAAGTATCCGCAACTAATGCT
AGAACTCAGCCATAAGTAGGACATTCAAGACAAGCAACCGAAACATATTAACCTGGGTCTACTCA
CACAAGCA
Found at i:170682 original size:37 final size:37
Alignment explanation
Indices: 170632--170712 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
170622 GGAAACCACC
170632 ATGAAAG-AAAAATCATGAACTCATATGGCCATTTAG
1 ATGAAAGTAAAAATCATGAACTCATATGGCCATTTAG
170668 ATGAAAGTAAAAATCATGAACTCATATGGCCATTTAG
1 ATGAAAGTAAAAATCATGAACTCATATGGCCATTTAG
170705 ATGAAAGT
1 ATGAAAGT
170713 TTTTTGAGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 7 0.16
37 37 0.84
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.26
Consensus pattern (37 bp):
ATGAAAGTAAAAATCATGAACTCATATGGCCATTTAG
Found at i:175163 original size:14 final size:15
Alignment explanation
Indices: 175139--175167 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
175129 TTTTTCTGTG
175139 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
175154 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
175168 AGTTTCGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:176560 original size:41 final size:41
Alignment explanation
Indices: 176498--176576 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
176488 TCGGATTTAT
* * * *
176498 TGCCAGTGAAATACTTTAGACTTTATGTCTAGCAGGCTTGA
1 TGCCAGTGAAATAATTCAGACTTTAAGTCCAGCAGGCTTGA
*
176539 TGCCGGTGAAATAATTCAGACTTTAAGTCCAGCAGGCT
1 TGCCAGTGAAATAATTCAGACTTTAAGTCCAGCAGGCT
176577 AAGTGTCGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (41 bp):
TGCCAGTGAAATAATTCAGACTTTAAGTCCAGCAGGCTTGA
Found at i:181169 original size:26 final size:26
Alignment explanation
Indices: 181133--181188 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
181123 AAACAGCACT
181133 ATTTGTGGCATGGTATAAGACGAGAC
1 ATTTGTGGCATGGTATAAGACGAGAC
* **
181159 ATTTTTGGCATGGTATGTGACGAGAC
1 ATTTGTGGCATGGTATAAGACGAGAC
181185 ATTT
1 ATTT
181189 CTGACTTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.34
Consensus pattern (26 bp):
ATTTGTGGCATGGTATAAGACGAGAC
Found at i:183709 original size:41 final size:41
Alignment explanation
Indices: 183628--183713 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 41
183618 TTTATTGCCA
* * *
183628 GTGAAATACTTCAGACTTTATGTCTAGCAGGCTTGATGTCG
1 GTGAAATAATTCAGACTTTAAGTCTAGCAGGCTAGATGTCG
*
183669 GTGAAATAATTCGGACTTTAAGTCTAGCAGGCTA-AGTGTCG
1 GTGAAATAATTCAGACTTTAAGTCTAGCAGGCTAGA-TGTCG
183710 GTGA
1 GTGA
183714 TCTAAATCAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 1 0.03
41 39 0.98
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (41 bp):
GTGAAATAATTCAGACTTTAAGTCTAGCAGGCTAGATGTCG
Found at i:183737 original size:41 final size:41
Alignment explanation
Indices: 183692--184041 Score: 574
Period size: 41 Copynumber: 8.5 Consensus size: 41
183682 GACTTTAAGT
* *
183692 CTAGCAGGCTAAGTGTCGGTGATCTAAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
183733 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAAGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
183774 CTAGAAGGCTAAATGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
183815 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAAGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
183856 CTAGAAGGCTAAATGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
183897 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAAGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
183938 CTAGAAGGCTAAATGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
183979 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
184020 CTAGCAGGCTAAGTGCTGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
184042 ATATGTTAAA
Statistics
Matches: 286, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 286 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:186698 original size:13 final size:13
Alignment explanation
Indices: 186680--186737 Score: 55
Period size: 13 Copynumber: 4.2 Consensus size: 13
186670 AACCCAAATT
186680 TTATTTTTATTTA
1 TTATTTTTATTTA
*
186693 TTATTTTTCTTTA
1 TTATTTTTATTTA
186706 CTTTATTTATTACTTTA
1 --TTATTT-TTA-TTTA
*
186723 TT-TTATTATTTA
1 TTATTTTTATTTA
186735 TTA
1 TTA
186738 CTTATTTGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
12 6 0.16
13 15 0.41
14 2 0.05
15 8 0.22
16 2 0.05
17 4 0.11
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTTTTATTTA
Found at i:186710 original size:22 final size:21
Alignment explanation
Indices: 186685--186744 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
186675 AAATTTTATT
*
186685 TTTATTTATTA-TTTTTCTTTA
1 TTTATTTATTACTTTAT-TTTA
186706 CTTTATTTATTACTTTATTTTA
1 -TTTATTTATTACTTTATTTTA
186728 -TTATTTATTAC-TTATTT
1 TTTATTTATTACTTTATTT
186745 GGATATTAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 6 0.17
20 11 0.31
22 15 0.42
23 4 0.11
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTATTTATTACTTTATTTTA
Found at i:186718 original size:12 final size:11
Alignment explanation
Indices: 186679--186736 Score: 59
Period size: 12 Copynumber: 5.2 Consensus size: 11
186669 CAACCCAAAT
186679 TTTATT-TTTA
1 TTTATTATTTA
186689 TTTATTATTT-
1 TTTATTATTTA
186699 TTCT-TTACTTTA
1 TT-TATTA-TTTA
186711 TTTATTACTTTA
1 TTTATTA-TTTA
186723 TTTTATTATTTA
1 -TTTATTATTTA
186735 TT
1 TT
186737 ACTTATTTGG
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
10 11 0.26
11 10 0.24
12 14 0.33
13 7 0.17
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:186724 original size:8 final size:7
Alignment explanation
Indices: 186680--186743 Score: 55
Period size: 7 Copynumber: 9.3 Consensus size: 7
186670 AACCCAAATT
186680 TTATTT-
1 TTATTTA
186686 TTATTTA
1 TTATTTA
186693 TTATTT-
1 TTATTTA
*
186699 TTCTTTA
1 TTATTTA
186706 CTTTATTTA
1 --TTATTTA
186715 TTACTTTA
1 TTA-TTTA
186723 -T-TTTA
1 TTATTTA
186728 TTATTTA
1 TTATTTA
*
186735 TTACTTA
1 TTATTTA
186742 TT
1 TT
186744 TGGATATTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
5 4 0.08
6 12 0.25
7 22 0.46
8 4 0.08
9 6 0.12
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:195994 original size:19 final size:19
Alignment explanation
Indices: 195957--195995 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
195947 AAATCAAAAT
** *
195957 AAAATAAAAAATTTGATTG
1 AAAATAAAAAAAATAATTG
195976 AAAATAAAAAAAATAATTG
1 AAAATAAAAAAAATAATTG
195995 A
1 A
195996 CGGTTCATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.26
Consensus pattern (19 bp):
AAAATAAAAAAAATAATTG
Found at i:196420 original size:18 final size:18
Alignment explanation
Indices: 196386--196422 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
196376 TAGAACTTTG
*
196386 ATATTGGTATGAGTTAGA
1 ATATTGGTATAAGTTAGA
*
196404 ATATTGGTATAATTTAGA
1 ATATTGGTATAAGTTAGA
196422 A
1 A
196423 AGGTTGGCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.41
Consensus pattern (18 bp):
ATATTGGTATAAGTTAGA
Found at i:204716 original size:24 final size:24
Alignment explanation
Indices: 204688--204762 Score: 107
Period size: 24 Copynumber: 3.2 Consensus size: 24
204678 TTTCGAGAAG
*
204688 ATTTAGTATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
204712 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
* * *
204736 ATTTAACATTT-TTAGAATAAAAT
1 ATTTAGCATTTATTAGCATAATAT
204759 ATTT
1 ATTT
204763 GTTATTTCTT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 14 0.30
24 33 0.70
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:204719 original size:14 final size:14
Alignment explanation
Indices: 204700--204740 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
204690 TTAGTATTTA
204700 TTAGCATAATATAT
1 TTAGCATAATATAT
204714 TTAGCAT--T-TA-
1 TTAGCATAATATAT
204724 TTAGCATAATATAT
1 TTAGCATAATATAT
204738 TTA
1 TTA
204741 ACATTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
10 7 0.30
11 2 0.09
12 2 0.09
13 2 0.09
14 10 0.43
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (14 bp):
TTAGCATAATATAT
Found at i:205137 original size:24 final size:25
Alignment explanation
Indices: 205087--205139 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
205077 AAGAAATAAC
**
205087 AAATATATTTATACTAATAAATGCT
1 AAATATATTTATACTAATAAAAACT
205112 AAATATA-TTATACTAATAAAAACT
1 AAATATATTTATACTAATAAAAACT
205136 AAAT
1 AAAT
205140 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 19 0.73
25 7 0.27
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36
Consensus pattern (25 bp):
AAATATATTTATACTAATAAAAACT
Found at i:207498 original size:51 final size:51
Alignment explanation
Indices: 207434--207530 Score: 158
Period size: 51 Copynumber: 1.9 Consensus size: 51
207424 AATTTTTGCA
*
207434 AACGGTTAAAGTATGGAACGTATATAAGCATATATATTTATAAATGCTCTG
1 AACGGTTAAAGTATGAAACGTATATAAGCATATATATTTATAAATGCTCTG
* * *
207485 AACGGTTAAAGTATGAAAGGTATATAATCATATATGTTTATAAATG
1 AACGGTTAAAGTATGAAACGTATATAAGCATATATATTTATAAATG
207531 TTCTTGATCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (51 bp):
AACGGTTAAAGTATGAAACGTATATAAGCATATATATTTATAAATGCTCTG
Found at i:208403 original size:41 final size:41
Alignment explanation
Indices: 208358--208475 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
208348 ATGAATCAAT
208358 TCAGGCTTAAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGGCTTAAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
*
208399 TCAGGC-TATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
1 TCAGGCTTA-AAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* *
208440 TCAGGCTTTAAGCCTAGCAGGCTAAGTGCCAGTGAA
1 TCAGGCTTAAAGCCTAGCAGGCTAAGTGCCGGTGAA
208476 TCTGTTTTAA
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
40 2 0.03
41 68 0.96
42 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (41 bp):
TCAGGCTTAAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
Found at i:208699 original size:36 final size:36
Alignment explanation
Indices: 208659--208748 Score: 94
Period size: 36 Copynumber: 2.5 Consensus size: 36
208649 TATATATGTG
208659 TGTGCATTCGGCATATGTGAATT-ATAAGTAT-ATATA
1 TGTGCATTCGGCATATGTG-ATTGATAAGTATAAT-TA
* * *
208695 TGTGCAGTCGGCACATGTGGTTGATAAGTATAATTA
1 TGTGCATTCGGCATATGTGATTGATAAGTATAATTA
* * *
208731 TTTGCTTTTGGCATATGT
1 TGTGCATTCGGCATATGT
208749 ATTTGAATAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
35 2 0.05
36 40 0.91
37 2 0.05
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (36 bp):
TGTGCATTCGGCATATGTGATTGATAAGTATAATTA
Found at i:211777 original size:493 final size:493
Alignment explanation
Indices: 210851--211829 Score: 1789
Period size: 493 Copynumber: 2.0 Consensus size: 493
210841 AATTACTTGA
*
210851 TTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAATCTAAGTATATTAATTCATATTT
1 TTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAATCTAAGGATATTAATTCATATTT
* *
210916 AATGTGCTTATTTTAGTGGAGTAAAAGTCACTGTTTAAGAATAGATCTAGCATAATTGAGTGGAG
66 AATGTGCTTATTTCAGTGGAGCAAAAGTCACTGTTTAAGAATAGATCTAGCATAATTGAGTGGAG
* * * *
210981 TTGCATGCAATTCTAGAAATAGGACGACATAAATCTACCGGGTTAGAGTCAAATCTAATAGGGGA
131 TTGCATGCAATCCTAGAAATAGGACGACATAAATCTACCGGATTAGAGTCAAATCAAATAAGGGA
*
211046 ATCTATAGATCGAGTTAATGCGACAATAGGGGTTTTAATTAGAAAGAGATTTCAATTAATCAATC
196 ATCCATAGATCGAGTTAATGCGACAATAGGGGTTTTAATTAGAAAGAGATTTCAATTAATCAATC
211111 TAGAGTTAGTAGTTCTTACTCTCAAAAGAGATCTTAACATAATTTAGAGATTTCTACGGATTAAG
261 TAGAGTTAGTAGTTCTTACTCTCAAAAGAGATCTTAACATAATTTAGAGATTTCTACGGATTAAG
211176 GCACAAGTGAATAAATCATTTAATTCAAATTCATAATAATAAGTGAAGTCTAGGTGGATTCTTTC
326 GCACAAGTGAATAAATCATTTAATTCAAATTCATAATAATAAGTGAAGTCTAGGTGGATTCTTTC
211241 CGGGGTATTGTTTCTCTCATTGGTATCTTCGGTTATTTTCCTATTTTATTCTCTGTTGCATTCTT
391 CGGGGTATTGTTTCTCTCATTGGTATCTTCGGTTATTTTCCTATTTTATTCTCTGTTGCATTCTT
211306 AGTTAAATTAGTTTAGTAATTTTAGATTAAATAATTAC
456 AGTTAAATTAGTTTAGTAATTTTAGATTAAATAATTAC
*
211344 TTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAATCTAAGGATATTAATTCATGTTT
1 TTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAATCTAAGGATATTAATTCATATTT
* * * *
211409 AATGTTCTTATTTCAGTGGAGCAAAATTCCCTGTTTAAGAGTAGATCTAGCATAATTGAGTGGAG
66 AATGTGCTTATTTCAGTGGAGCAAAAGTCACTGTTTAAGAATAGATCTAGCATAATTGAGTGGAG
* *
211474 TTGCATGCAATCCTAGAAATAGGACGTCATAAATCTACTGGATTAGAGTCAAA-CGAAATAAGGG
131 TTGCATGCAATCCTAGAAATAGGACGACATAAATCTACCGGATTAGAGTCAAATC-AAATAAGGG
* *
211538 AATCCATTGATCGAGTTAATGTGACAATAGGGGTTTTAATTAGAAAGAGATTTCAATTAATCAAT
195 AATCCATAGATCGAGTTAATGCGACAATAGGGGTTTTAATTAGAAAGAGATTTCAATTAATCAAT
211603 CTAGAGTTAGTAGTTCTTACTCTCAAAAGAGATCTTAACATAATTTAGAGATTTCTACGGATTAA
260 CTAGAGTTAGTAGTTCTTACTCTCAAAAGAGATCTTAACATAATTTAGAGATTTCTACGGATTAA
211668 GGCACAAGTGAATAAATCATTTAATTCAAATTCATAATAATAAGTGAAGTCTAGGTGGATTCTTT
325 GGCACAAGTGAATAAATCATTTAATTCAAATTCATAATAATAAGTGAAGTCTAGGTGGATTCTTT
211733 CCGGGGTATTGTTTCTCTCATTGGTATCTTCGGTTATTTTCCTATTTTATTCTCTGTTGCATTCT
390 CCGGGGTATTGTTTCTCTCATTGGTATCTTCGGTTATTTTCCTATTTTATTCTCTGTTGCATTCT
211798 TAGTTAAATTAGTTTAGTAATTTTAGATTAAA
455 TAGTTAAATTAGTTTAGTAATTTTAGATTAAA
211830 AACAATTACT
Statistics
Matches: 468, Mismatches: 17, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
492 1 0.00
493 467 1.00
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (493 bp):
TTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAATCTAAGGATATTAATTCATATTT
AATGTGCTTATTTCAGTGGAGCAAAAGTCACTGTTTAAGAATAGATCTAGCATAATTGAGTGGAG
TTGCATGCAATCCTAGAAATAGGACGACATAAATCTACCGGATTAGAGTCAAATCAAATAAGGGA
ATCCATAGATCGAGTTAATGCGACAATAGGGGTTTTAATTAGAAAGAGATTTCAATTAATCAATC
TAGAGTTAGTAGTTCTTACTCTCAAAAGAGATCTTAACATAATTTAGAGATTTCTACGGATTAAG
GCACAAGTGAATAAATCATTTAATTCAAATTCATAATAATAAGTGAAGTCTAGGTGGATTCTTTC
CGGGGTATTGTTTCTCTCATTGGTATCTTCGGTTATTTTCCTATTTTATTCTCTGTTGCATTCTT
AGTTAAATTAGTTTAGTAATTTTAGATTAAATAATTAC
Done.