Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 10 of 75
Found at i:2695128 original size:20 final size:22
Alignment explanation
Indices: 2695103--2695148 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
2695093 TACAGGATTA
*
2695103 CACTTCGAT-GCCACTG-TTTG
1 CACTTCAATGGCCACTGATTTG
*
2695123 CACTTCAATGGCTACTGATTTG
1 CACTTCAATGGCCACTGATTTG
2695145 CACT
1 CACT
2695149 ATGGTGCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 6 0.27
22 8 0.36
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (22 bp):
CACTTCAATGGCCACTGATTTG
Found at i:2695169 original size:22 final size:22
Alignment explanation
Indices: 2695144--2695205 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
2695134 CTACTGATTT
* * *
2695144 GCACTATGGTGCCTATTGTTCA
1 GCACTTTGGTGCCTACTGCTCA
*
2695166 GCACTTTAGTGCCTACTGCTCA
1 GCACTTTGGTGCCTACTGCTCA
2695188 GCACTTTGGTGCCTACTG
1 GCACTTTGGTGCCTACTG
2695206 GTGTGGTGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.16, C:0.27, G:0.23, T:0.34
Consensus pattern (22 bp):
GCACTTTGGTGCCTACTGCTCA
Found at i:2698821 original size:22 final size:22
Alignment explanation
Indices: 2698778--2698852 Score: 71
Period size: 22 Copynumber: 3.5 Consensus size: 22
2698768 TTCACTGCTG
* *
2698778 TTTTGTTGTTG-TTTGTTGCCA
1 TTTTGTTGTTGTTTTGCTACCA
*
2698799 TTTTGATGTTGTTTTGCTACCA
1 TTTTGTTGTTGTTTTGCTACCA
* * * * *
2698821 TTTTGCTATTATATTGCTACTA
1 TTTTGTTGTTGTTTTGCTACCA
2698843 TTTTGTTGTT
1 TTTTGTTGTT
2698853 ATTGTTTGGA
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
21 10 0.23
22 33 0.77
ACGTcount: A:0.12, C:0.11, G:0.17, T:0.60
Consensus pattern (22 bp):
TTTTGTTGTTGTTTTGCTACCA
Found at i:2699235 original size:60 final size:60
Alignment explanation
Indices: 2699142--2699262 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
2699132 CCATATTTCG
2699142 AGTCAAACTTGGACCTAAAAAATGACCTTAAAATTTCTGCATTAACCTAACTCGAACTCA
1 AGTCAAACTTGGACCTAAAAAATGACCTTAAAATTTCTGCATTAACCTAACTCGAACTCA
* *
2699202 AGTCAAACTTGGACCTAGAAAATGACCTTAAAATTTTTGCATTAACCTAACTCGAACTCA
1 AGTCAAACTTGGACCTAAAAAATGACCTTAAAATTTCTGCATTAACCTAACTCGAACTCA
2699262 A
1 A
2699263 CCCAACCTAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (60 bp):
AGTCAAACTTGGACCTAAAAAATGACCTTAAAATTTCTGCATTAACCTAACTCGAACTCA
Found at i:2703103 original size:18 final size:18
Alignment explanation
Indices: 2703082--2703116 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2703072 TTTCAAAACG
2703082 AAAAGAAAAAGAAAAAAT
1 AAAAGAAAAAGAAAAAAT
*
2703100 AAAAGAAAAATAAAAAA
1 AAAAGAAAAAGAAAAAA
2703117 AACATAGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.06
Consensus pattern (18 bp):
AAAAGAAAAAGAAAAAAT
Found at i:2710578 original size:21 final size:21
Alignment explanation
Indices: 2710552--2710692 Score: 97
Period size: 21 Copynumber: 6.8 Consensus size: 21
2710542 CGTATTTTCT
*
2710552 TTCAGTTTAGCTCTTATGAGC
1 TTCAGTTTAACTCTTATGAGC
* *
2710573 TTCAG-TTAACTCATATGAGT
1 TTCAGTTTAACTCTTATGAGC
* * * * *
2710593 TTTAGTTTAACCCTTCTGGGT
1 TTCAGTTTAACTCTTATGAGC
** *
2710614 TTCAGTTTAGTTCTTTTGAGC
1 TTCAGTTTAACTCTTATGAGC
* * *
2710635 TTCAGTTTAACCCTTATGGGT
1 TTCAGTTTAACTCTTATGAGC
* * *
2710656 TTCCGTTCAGCTCTTATGAGC
1 TTCAGTTTAACTCTTATGAGC
*
2710677 TTCTA-TTTAACCCTTA
1 TTC-AGTTTAACTCTTA
2710693 CGAGTTTCTA
Statistics
Matches: 87, Mismatches: 31, Indels: 4
0.71 0.25 0.03
Matches are distributed among these distances:
20 16 0.18
21 71 0.82
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (21 bp):
TTCAGTTTAACTCTTATGAGC
Found at i:2710644 original size:42 final size:43
Alignment explanation
Indices: 2710555--2710692 Score: 140
Period size: 42 Copynumber: 3.3 Consensus size: 43
2710545 ATTTTCTTTC
* * * * * * *
2710555 AGTTTAGCTCTTATGAGCTTCAGTT-AACTCATATGAG-TTTT
1 AGTTTAACCCTTATGGGTTTCAGTTCAGCTCTTATGAGCTTCT
* * * *
2710596 AGTTTAACCCTTCTGGGTTTCAGTTTAGTTCTTTTGAGCTTC-
1 AGTTTAACCCTTATGGGTTTCAGTTCAGCTCTTATGAGCTTCT
*
2710638 AGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTCT
1 AGTTTAACCCTTATGGGTTTCAGTTCAGCTCTTATGAGCTTCT
2710681 A-TTTAACCCTTA
1 AGTTTAACCCTTA
2710693 CGAGTTTCTA
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
41 20 0.25
42 56 0.71
43 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.44
Consensus pattern (43 bp):
AGTTTAACCCTTATGGGTTTCAGTTCAGCTCTTATGAGCTTCT
Found at i:2710713 original size:21 final size:21
Alignment explanation
Indices: 2710668--2710713 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
2710658 CCGTTCAGCT
* *
2710668 CTTATGAGCTTCTATTTAACC
1 CTTACGAGCTTCTATTTAACA
* *
2710689 CTTACGAGTTTCTATTTAGCA
1 CTTACGAGCTTCTATTTAACA
2710710 CTTA
1 CTTA
2710714 TGTACTTCTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (21 bp):
CTTACGAGCTTCTATTTAACA
Found at i:2710722 original size:42 final size:42
Alignment explanation
Indices: 2710630--2710715 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
2710620 TTAGTTCTTT
* * * *
2710630 TGAGCTTC-AGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTA
1 TGAGCTTCTA-TTTAACCCTTACGAGTTTCCATTCAGCACTTA
* *
2710672 TGAGCTTCTATTTAACCCTTACGAGTTTCTATTTAGCACTTA
1 TGAGCTTCTATTTAACCCTTACGAGTTTCCATTCAGCACTTA
2710714 TG
1 TG
2710716 TACTTCTGTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 36 0.97
43 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (42 bp):
TGAGCTTCTATTTAACCCTTACGAGTTTCCATTCAGCACTTA
Found at i:2714409 original size:64 final size:64
Alignment explanation
Indices: 2714274--2714417 Score: 245
Period size: 64 Copynumber: 2.2 Consensus size: 64
2714264 GCTAACATGC
*
2714274 CCGTGTGGCTCACACGCTCAGATTGGCCTTTTCCATGTGGCTCACACGCTCAGATTGGCCTTTT
1 CCGTGTGGCTCACACGCTCAGATTGGCCTTTTCCATGTGGCTCACACGCTCAGATTGGCCTTCT
*
2714338 CCATGTGGCTCACACGCTCAGATTGGCCTTTTCCATGTGGCTCACACGCTCAGATTGGCCTTGCT
1 CCGTGTGGCTCACACGCTCAGATTGGCCTTTTCCATGTGGCTCACACGCTCAGATTGGCCTT-CT
*
2714403 -CGTGTGGCCCACACG
1 CCGTGTGGCTCACACG
2714418 GTTTAGCCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
64 74 0.99
65 1 0.01
ACGTcount: A:0.15, C:0.33, G:0.24, T:0.28
Consensus pattern (64 bp):
CCGTGTGGCTCACACGCTCAGATTGGCCTTTTCCATGTGGCTCACACGCTCAGATTGGCCTTCT
Found at i:2714417 original size:32 final size:32
Alignment explanation
Indices: 2714277--2714399 Score: 246
Period size: 32 Copynumber: 3.8 Consensus size: 32
2714267 AACATGCCCG
2714277 TGTGGCTCACACGCTCAGATTGGCCTTTTCCA
1 TGTGGCTCACACGCTCAGATTGGCCTTTTCCA
2714309 TGTGGCTCACACGCTCAGATTGGCCTTTTCCA
1 TGTGGCTCACACGCTCAGATTGGCCTTTTCCA
2714341 TGTGGCTCACACGCTCAGATTGGCCTTTTCCA
1 TGTGGCTCACACGCTCAGATTGGCCTTTTCCA
2714373 TGTGGCTCACACGCTCAGATTGGCCTT
1 TGTGGCTCACACGCTCAGATTGGCCTT
2714400 GCTCGTGTGG
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 91 1.00
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (32 bp):
TGTGGCTCACACGCTCAGATTGGCCTTTTCCA
Found at i:2719554 original size:5 final size:5
Alignment explanation
Indices: 2719544--2719571 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
2719534 GGAATGAGAC
2719544 TTGAG TTGAG TTGAG TTGAG TTGAG TTG
1 TTGAG TTGAG TTGAG TTGAG TTGAG TTG
2719572 TAGTAGCCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (5 bp):
TTGAG
Found at i:2722572 original size:19 final size:17
Alignment explanation
Indices: 2722541--2722579 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
2722531 TAATTTAGAA
*
2722541 TTTTTTTATTTTTAAGAT
1 TTTTTTTAATTTTAA-AT
2722559 TTTTTATTAATTTTAAAT
1 TTTTT-TTAATTTTAAAT
2722577 TTT
1 TTT
2722580 AAATTTGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTTTTTAATTTTAAAT
Found at i:2723386 original size:4 final size:4
Alignment explanation
Indices: 2723377--2723401 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
2723367 TAATGGACAT
2723377 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
2723402 CATAAAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:2725694 original size:17 final size:17
Alignment explanation
Indices: 2725672--2725704 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
2725662 GGAGGTTGGG
2725672 GGACAAAACATAGACAA
1 GGACAAAACATAGACAA
2725689 GGACAAAACATAGACA
1 GGACAAAACATAGACA
2725705 TTTAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.18, G:0.18, T:0.06
Consensus pattern (17 bp):
GGACAAAACATAGACAA
Found at i:2731922 original size:29 final size:29
Alignment explanation
Indices: 2731858--2731915 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
2731848 CATATCGAAG
2731858 TAAAACTAGTTATTTGTTAATAATCTTGA
1 TAAAACTAGTTATTTGTTAATAATCTTGA
2731887 TAAAACTAGTTATTTGTTAATAATCTTGA
1 TAAAACTAGTTATTTGTTAATAATCTTGA
2731916 AACAACTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (29 bp):
TAAAACTAGTTATTTGTTAATAATCTTGA
Found at i:2734980 original size:16 final size:16
Alignment explanation
Indices: 2734959--2734989 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2734949 AATATATTTA
2734959 ATATTATTAAATAATG
1 ATATTATTAAATAATG
*
2734975 ATATTATTATATAAT
1 ATATTATTAAATAAT
2734990 TATTATTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATATTATTAAATAATG
Found at i:2741955 original size:3 final size:3
Alignment explanation
Indices: 2741947--2741980 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
2741937 GTGAATGATT
2741947 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
2741981 NNNNNNNNNN
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:2743624 original size:19 final size:19
Alignment explanation
Indices: 2743602--2743640 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
2743592 ATTAAAATAT
*
2743602 TATTTTTATAAATAAATTA
1 TATTTATATAAATAAATTA
* *
2743621 TATTTATATGAATTAATTA
1 TATTTATATAAATAAATTA
2743640 T
1 T
2743641 TCACTTCTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TATTTATATAAATAAATTA
Found at i:2749794 original size:17 final size:18
Alignment explanation
Indices: 2749781--2749825 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 18
2749771 AAATTTTTTC
2749781 TTTTCTTTTCTTT-TCAT
1 TTTTCTTTTCTTTCTCAT
2749798 TTTTC-TTTCTTTCTC-T
1 TTTTCTTTTCTTTCTCAT
*
2749814 TTATTCTCTTCT
1 TT-TTCTTTTCT
2749826 CCGACACCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 10 0.42
17 10 0.42
18 4 0.17
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTCTTTTCTTTCTCAT
Found at i:2751186 original size:27 final size:29
Alignment explanation
Indices: 2751128--2751186 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
2751118 ATCGATCTCC
*
2751128 AACCGAATTAGATCGATTAATCGATCGATT
1 AACCGAATTAGATCGAGT-ATCGATCGATT
2751158 AACCGAATTAGATCG-GT-TCGATCGATT
1 AACCGAATTAGATCGAGTATCGATCGATT
2751185 AA
1 AA
2751187 TTTAGTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 12 0.43
29 1 0.04
30 15 0.54
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (29 bp):
AACCGAATTAGATCGAGTATCGATCGATT
Found at i:2758241 original size:9 final size:9
Alignment explanation
Indices: 2758227--2758272 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
2758217 TATAGTTTGA
*
2758227 TATTCGAAC
1 TATTCGAAT
*
2758236 TATTCGAGT
1 TATTCGAAT
2758245 TATTCGAAT
1 TATTCGAAT
*
2758254 TATTCGAGT
1 TATTCGAAT
2758263 TATTCGAAT
1 TATTCGAAT
2758272 T
1 T
2758273 CAAAAACTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (9 bp):
TATTCGAAT
Found at i:2758271 original size:18 final size:18
Alignment explanation
Indices: 2758227--2758272 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
2758217 TATAGTTTGA
*
2758227 TATTCGAACTATTCGAGT
1 TATTCGAATTATTCGAGT
2758245 TATTCGAATTATTCGAGT
1 TATTCGAATTATTCGAGT
2758263 TATTCGAATT
1 TATTCGAATT
2758273 CAAAAACTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (18 bp):
TATTCGAATTATTCGAGT
Found at i:2760530 original size:32 final size:32
Alignment explanation
Indices: 2760482--2760568 Score: 131
Period size: 31 Copynumber: 2.8 Consensus size: 32
2760472 AGCAACACTT
* * **
2760482 AACATTTCGCAGTTAAGTCAATAAACAGTAGC
1 AACATTTAGCATTTAAGTCAATAAACAACAGC
2760514 AACATTTAGCATTTAAGTCAAT-AACAACAGC
1 AACATTTAGCATTTAAGTCAATAAACAACAGC
2760545 AACATTTAGCATTTAAGTCAATAA
1 AACATTTAGCATTTAAGTCAATAA
2760569 GTTTTCCTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 29 0.58
32 21 0.42
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (32 bp):
AACATTTAGCATTTAAGTCAATAAACAACAGC
Found at i:2760981 original size:25 final size:25
Alignment explanation
Indices: 2760953--2761007 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
2760943 AACAACACTC
*
2760953 GGACAACATTAATTTG-TACAAAAAT
1 GGACAACATTAATATGCTA-AAAAAT
* *
2760978 GGACAGCATTGATATGCTAAAAAAT
1 GGACAACATTAATATGCTAAAAAAT
2761003 GGACA
1 GGACA
2761008 GCACCTAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (25 bp):
GGACAACATTAATATGCTAAAAAAT
Found at i:2774433 original size:16 final size:17
Alignment explanation
Indices: 2774401--2774433 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2774391 CCCGAATGAG
*
2774401 CCAAACTCCAAACTAAT
1 CCAAACTCCAAAATAAT
2774418 CCAAAC-CCAAAATAAT
1 CCAAACTCCAAAATAAT
2774434 ATGAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (17 bp):
CCAAACTCCAAAATAAT
Found at i:2780126 original size:31 final size:29
Alignment explanation
Indices: 2780091--2780157 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
2780081 AAATCTTAAA
* *
2780091 TTATACACGAACTATAGTTTAATGTATAATT
1 TTATACACAAACTATAATTT--TGTATAATT
* *
2780122 TTATACACAAATTTTAATTTTGTATAATT
1 TTATACACAAACTATAATTTTGTATAATT
2780151 TTATACA
1 TTATACA
2780158 TAAAATTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (29 bp):
TTATACACAAACTATAATTTTGTATAATT
Found at i:2780145 original size:29 final size:30
Alignment explanation
Indices: 2780113--2780171 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
2780103 TATAGTTTAA
*
2780113 TGTATAATTTTATACA-CAAATTTTAATTT
1 TGTATAATTTTATACATAAAATTTTAATTT
2780142 TGTATAATTTTATACATAAAATTTTAATTT
1 TGTATAATTTTATACATAAAATTTTAATTT
2780172 GATCTAATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (30 bp):
TGTATAATTTTATACATAAAATTTTAATTT
Found at i:2784080 original size:23 final size:24
Alignment explanation
Indices: 2784048--2784092 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
2784038 AACTAAGCTC
2784048 ACTTACTTTTCTAGCTT-ATTTCAT
1 ACTTACTTTTCTA-CTTAATTTCAT
2784072 ACTT-CTTTTCTACTTAATTTC
1 ACTTACTTTTCTACTTAATTTC
2784093 TTGCCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 3 0.15
23 13 0.65
24 4 0.20
ACGTcount: A:0.20, C:0.22, G:0.02, T:0.56
Consensus pattern (24 bp):
ACTTACTTTTCTACTTAATTTCAT
Found at i:2784976 original size:14 final size:14
Alignment explanation
Indices: 2784957--2784983 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2784947 AACTTATTTC
2784957 ATAATAATAATAAT
1 ATAATAATAATAAT
2784971 ATAATAATAATAA
1 ATAATAATAATAA
2784984 CAATTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:2788299 original size:19 final size:20
Alignment explanation
Indices: 2788275--2788320 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
2788265 CTAATTTACT
*
2788275 TCAAAT-AAATAAATAGAGA
1 TCAAATAAAAAAAATAGAGA
2788294 TCAAATTAAAAAAAATAGAGA
1 TCAAA-TAAAAAAAATAGAGA
*
2788315 TTAAAT
1 TCAAAT
2788321 TGAATGAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 2 0.09
21 16 0.70
ACGTcount: A:0.63, C:0.04, G:0.09, T:0.24
Consensus pattern (20 bp):
TCAAATAAAAAAAATAGAGA
Found at i:2793076 original size:31 final size:29
Alignment explanation
Indices: 2793019--2793077 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
2793009 TGTTATAATT
* *
2793019 TATTTATTTTATTCTTTTATGATTTTTTC
1 TATTTATTTTATTATTTTAGGATTTTTTC
*
2793048 TATTTATTATTAATTATTTTAGGTTTTTTT
1 TATTTATT-TT-ATTATTTTAGGATTTTTT
2793078 TTTAATTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.32
30 2 0.08
31 15 0.60
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.71
Consensus pattern (29 bp):
TATTTATTTTATTATTTTAGGATTTTTTC
Found at i:2793455 original size:18 final size:18
Alignment explanation
Indices: 2793425--2793459 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2793415 AAGTTTTTTG
2793425 TGTAAAAATATTAAAATT
1 TGTAAAAATATTAAAATT
2793443 TGTATAAAA-ATTAAAAT
1 TGTA-AAAATATTAAAAT
2793460 GAAGTTTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
TGTAAAAATATTAAAATT
Found at i:2796063 original size:25 final size:25
Alignment explanation
Indices: 2796009--2796086 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
2795999 GTAATATACA
*
2796009 GAGAGCACAAATGTGCT-A-AA-CG
1 GAGAGCACTAATGTGCTAATAATCG
*
2796031 GAGGGCACTAATGTGCTAATAATCG
1 GAGAGCACTAATGTGCTAATAATCG
* * *
2796056 GAGAGCACTAACGTGTTAATAATCA
1 GAGAGCACTAATGTGCTAATAATCG
2796081 GAGAGC
1 GAGAGC
2796087 GTGCTAAGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
22 15 0.32
23 1 0.02
24 2 0.04
25 29 0.62
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (25 bp):
GAGAGCACTAATGTGCTAATAATCG
Found at i:2801211 original size:26 final size:24
Alignment explanation
Indices: 2801179--2801238 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
2801169 GCCATGATCT
* *
2801179 GTAAGCTCATTTCGAGTTGAAGAACG
1 GTAAGCTCATATCGAGCTG-A-AACG
2801205 GTAAGCTC-TATCGAGCTGAAACG
1 GTAAGCTCATATCGAGCTGAAACG
2801228 GTAAGCTCATA
1 GTAAGCTCATA
2801239 AAAGTTGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 12 0.39
24 3 0.10
25 8 0.26
26 8 0.26
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (24 bp):
GTAAGCTCATATCGAGCTGAAACG
Found at i:2801914 original size:21 final size:22
Alignment explanation
Indices: 2801890--2801930 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
2801880 AAACTTGTAT
2801890 ATCTAACATTAAAC-CTTAATA
1 ATCTAACATTAAACACTTAATA
*
2801911 ATCTATCATTAAACACTTAA
1 ATCTAACATTAAACACTTAA
2801931 ACAACCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (22 bp):
ATCTAACATTAAACACTTAATA
Found at i:2806098 original size:11 final size:10
Alignment explanation
Indices: 2806078--2806104 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
2806068 CGCCCATATT
2806078 ATTTTTAAAA
1 ATTTTTAAAA
2806088 ATTTTTAAAA
1 ATTTTTAAAA
2806098 ATTTTTA
1 ATTTTTA
2806105 TATTATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATTTTTAAAA
Found at i:2806627 original size:2 final size:2
Alignment explanation
Indices: 2806620--2806649 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2806610 ACACTTTGCA
2806620 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2806650 CCAACAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2808750 original size:18 final size:18
Alignment explanation
Indices: 2808727--2808766 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
2808717 TTATTATTTT
*
2808727 TAAAATTT-ACTATTAAAA
1 TAAAATTTAAATATT-AAA
2808745 TAAAATTTAAATATTAAA
1 TAAAATTTAAATATTAAA
2808763 TAAA
1 TAAA
2808767 TTATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAATTTAAATATTAAA
Found at i:2808773 original size:19 final size:19
Alignment explanation
Indices: 2808737--2808787 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 19
2808727 TAAAATTTAC
*
2808737 TATTAAAATAAAAT-TTAAA
1 TATT-AAATAAATTATTAAA
2808756 TATTAAATAAATTATTAAA
1 TATTAAATAAATTATTAAA
*
2808775 -AAT-AATAAATTAT
1 TATTAAATAAATTAT
2808788 ATTAATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 10 0.34
19 9 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TATTAAATAAATTATTAAA
Found at i:2813225 original size:5 final size:5
Alignment explanation
Indices: 2813217--2813243 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
2813207 TTTTCTCCCG
2813217 CTTTT CTTTT CTTTT CTTTT CTTTT CT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CT
2813244 ACCAATCAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
CTTTT
Found at i:2819552 original size:23 final size:23
Alignment explanation
Indices: 2819522--2819568 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
2819512 TCTCTCCAAC
2819522 TCATAAATAGGAGGATAATGCGT
1 TCATAAATAGGAGGATAATGCGT
2819545 TCATAAATAGGAGGATAATGCGT
1 TCATAAATAGGAGGATAATGCGT
2819568 T
1 T
2819569 TCAACGCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.28
Consensus pattern (23 bp):
TCATAAATAGGAGGATAATGCGT
Found at i:2821423 original size:13 final size:13
Alignment explanation
Indices: 2821405--2821431 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2821395 AGTTAAACTT
2821405 TGTTATCTTTTCC
1 TGTTATCTTTTCC
2821418 TGTTATCTTTTCC
1 TGTTATCTTTTCC
2821431 T
1 T
2821432 AGTCTAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.22, G:0.07, T:0.63
Consensus pattern (13 bp):
TGTTATCTTTTCC
Found at i:2825751 original size:31 final size:30
Alignment explanation
Indices: 2825684--2825756 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
2825674 ATTACAAAAT
* *
2825684 AGTCATTAAATTATTTGAAAATTTTCATTA
1 AGTCACTAAACTATTTGAAAATTTTCATTA
* *
2825714 AATCACTAAACTATTT-AAAAGTTTTTATTTA
1 AGTCACTAAACTATTTGAAAA-TTTTCA-TTA
2825745 AGTCACTAAACT
1 AGTCACTAAACT
2825757 GTTAAGTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 4 0.11
30 18 0.50
31 14 0.39
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.42
Consensus pattern (30 bp):
AGTCACTAAACTATTTGAAAATTTTCATTA
Found at i:2834216 original size:26 final size:26
Alignment explanation
Indices: 2834186--2834237 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
2834176 AAATTAAGTA
2834186 AAGAAAATAAAATTAAAAGGATTAAT
1 AAGAAAATAAAATTAAAAGGATTAAT
2834212 AAGAAAATAAAATTAAAAGGATTAAT
1 AAGAAAATAAAATTAAAAGGATTAAT
2834238 TCACAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (26 bp):
AAGAAAATAAAATTAAAAGGATTAAT
Found at i:2839666 original size:26 final size:28
Alignment explanation
Indices: 2839623--2839678 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 28
2839613 ACTCCATTGA
2839623 ATTTAATAGTACAGGGACTAAATTGATCC
1 ATTTAATAGTA-AGGGACTAAATTGATCC
*
2839652 ATTTAATAGT-A-GGACTAATTTGATCC
1 ATTTAATAGTAAGGGACTAAATTGATCC
2839678 A
1 A
2839679 GTCCTTATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 15 0.58
27 1 0.04
29 10 0.38
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (28 bp):
ATTTAATAGTAAGGGACTAAATTGATCC
Found at i:2843430 original size:186 final size:186
Alignment explanation
Indices: 2843116--2843496 Score: 717
Period size: 186 Copynumber: 2.0 Consensus size: 186
2843106 TGAAGCAAGG
*
2843116 CCAAGATGATCTAGATGCAAACAAAGGGAAGTTCAGGCTGGTAGCTTTGGATCCGAAAGCAGGAA
1 CCAAGATGATCTAGATGCAAACAAAGGGAAGTTCAGGCTGGCAGCTTTGGATCCGAAAGCAGGAA
2843181 ATAATAGCTAAAAACACACAACCATCAGATACAGAGAAACAATCAATGTGGGTTCACCTAAGTGA
66 ATAATAGCTAAAAACACACAACCATCAGATACAGAGAAACAATCAATGTGGGTTCACCTAAGTGA
2843246 AAATGTAGCATGTACTTATTCATTTGAGGGGTTGATACGGTAAGAGGAAGAGAAAT
131 AAATGTAGCATGTACTTATTCATTTGAGGGGTTGATACGGTAAGAGGAAGAGAAAT
2843302 CCAAGATGATCTAGATGCAAACAAAGGGAAGTTCAGGCTGGCAGCTTTGGATCCGAAAGCAGGAA
1 CCAAGATGATCTAGATGCAAACAAAGGGAAGTTCAGGCTGGCAGCTTTGGATCCGAAAGCAGGAA
*
2843367 ATAATAGGTAAAAACACACAACCATCAGATACAGAGAAACAATCAATGTGGGTTCACCTAAGTGA
66 ATAATAGCTAAAAACACACAACCATCAGATACAGAGAAACAATCAATGTGGGTTCACCTAAGTGA
* *
2843432 AAATGTAGTATGTACTTATTCATTTGAGGGGTTGATACTGTAAGAGGAAGAGAAAT
131 AAATGTAGCATGTACTTATTCATTTGAGGGGTTGATACGGTAAGAGGAAGAGAAAT
*
2843488 CCAAAATGA
1 CCAAGATGA
2843497 GAACAGAAAT
Statistics
Matches: 190, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
186 190 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (186 bp):
CCAAGATGATCTAGATGCAAACAAAGGGAAGTTCAGGCTGGCAGCTTTGGATCCGAAAGCAGGAA
ATAATAGCTAAAAACACACAACCATCAGATACAGAGAAACAATCAATGTGGGTTCACCTAAGTGA
AAATGTAGCATGTACTTATTCATTTGAGGGGTTGATACGGTAAGAGGAAGAGAAAT
Found at i:2853077 original size:20 final size:20
Alignment explanation
Indices: 2853052--2853092 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
2853042 GGAGATTGTC
2853052 ATGCCAAACTACCCTGCCAA
1 ATGCCAAACTACCCTGCCAA
*
2853072 ATGCCAAACTACCTTGCCAA
1 ATGCCAAACTACCCTGCCAA
2853092 A
1 A
2853093 ATTTGATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.37, G:0.10, T:0.17
Consensus pattern (20 bp):
ATGCCAAACTACCCTGCCAA
Found at i:2855426 original size:44 final size:43
Alignment explanation
Indices: 2855363--2855448 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 43
2855353 ATTGCCATGT
*
2855363 CAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGATGC
1 CAAACTGCACTGCCAAAATTTGATTGAATG-AAAATTAAGATGC
*
2855407 CAAACTGTACTGCCAAAATTTGATTGAATGAAAATTAAGATG
1 CAAACTGCACTGCCAAAATTTGATTGAATGAAAATTAAGATG
2855449 GCATTTCTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 12 0.30
44 28 0.70
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (43 bp):
CAAACTGCACTGCCAAAATTTGATTGAATGAAAATTAAGATGC
Found at i:2855836 original size:18 final size:17
Alignment explanation
Indices: 2855804--2855837 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
2855794 TTAACAAGCA
*
2855804 AATAAATTTAAAATAAT
1 AATAAAATTAAAATAAT
2855821 AATAAAATTAACAATAA
1 AATAAAATTAA-AATAA
2855838 AACAAGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAAATTAAAATAAT
Found at i:2856228 original size:16 final size:16
Alignment explanation
Indices: 2856207--2856237 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2856197 GAAAGATTAT
2856207 ATAAAAATATGATAAG
1 ATAAAAATATGATAAG
*
2856223 ATAAAAATATTATAA
1 ATAAAAATATGATAA
2856238 AAATATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (16 bp):
ATAAAAATATGATAAG
Found at i:2857030 original size:19 final size:19
Alignment explanation
Indices: 2857008--2857068 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
2856998 TATAGTTTAG
2857008 ATTAGAATTTTGTATGAAT
1 ATTAGAATTTTGTATGAAT
* *
2857027 ATTATAATGTTTTTATGAAT
1 ATTAGAAT-TTTGTATGAAT
*
2857047 ATT-GTAATGTTGTATGAAT
1 ATTAG-AATTTTGTATGAAT
2857066 ATT
1 ATT
2857069 GTAATTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 19 0.54
20 16 0.46
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (19 bp):
ATTAGAATTTTGTATGAAT
Found at i:2857045 original size:20 final size:20
Alignment explanation
Indices: 2857015--2857073 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 20
2857005 TAGATTAGAA
*
2857015 TTTTGTATGAATATTATAATG
1 TTTT-TATGAATATTGTAATG
2857036 TTTTTATGAATATTGTAATG
1 TTTTTATGAATATTGTAATG
*
2857056 -TTGTATGAATATTGTAAT
1 TTTTTATGAATATTGTAAT
2857074 TATTTTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 17 0.47
20 15 0.42
21 4 0.11
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (20 bp):
TTTTTATGAATATTGTAATG
Found at i:2857069 original size:19 final size:20
Alignment explanation
Indices: 2857016--2857283 Score: 112
Period size: 22 Copynumber: 12.9 Consensus size: 20
2857006 AGATTAGAAT
*
2857016 TTTGTATGAATATTATAATG
1 TTTGTATGAATATTGTAATG
*
2857036 TTTTTATGAATATTGTAATG
1 TTTGTATGAATATTGTAATG
2857056 -TTGTATGAATATTGTAAT-
1 TTTGTATGAATATTGTAATG
*
2857074 TATTTTAT-AATTAAATTTGT-AT-
1 T-TTGTATGAA-T--A-TTGTAATG
* * * *
2857096 TTATAGTTTTGGAT-TAGTAAATT
1 TT-T-G-TATGAATATTGT-AATG
2857119 TTTGTATGAATATTGTAAT-
1 TTTGTATGAATATTGTAATG
* * *
2857138 TTTGTATAAATATTATAATTTT
1 TTTGTATGAATATTGTAA--TG
2857160 TTTGTATGAATATTGTAATATTATAG
1 TTTGTATGAATATTG---TA--AT-G
* *
2857186 TTTTGTATGAATATTGCAATTTT
1 -TTTGTATGAATATTGTAA--TG
2857209 TTTGTATGAATATTGTAAT-
1 TTTGTATGAATATTGTAATG
*
2857228 TTAG--T-AAT-TTGTAAT-
1 TTTGTATGAATATTGTAATG
* *
2857243 TTTGTATGAATATTATATTTG
1 TTTGTATGAATATTGTA-ATG
2857264 TTTTGTATGAATATTGTAAT
1 -TTTGTATGAATATTGTAAT
2857284 ATTATAATTT
Statistics
Matches: 190, Mismatches: 25, Indels: 65
0.68 0.09 0.23
Matches are distributed among these distances:
15 10 0.05
16 3 0.02
17 2 0.01
18 3 0.02
19 42 0.22
20 37 0.19
21 7 0.04
22 55 0.29
23 6 0.03
24 5 0.03
25 4 0.02
27 16 0.08
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.54
Consensus pattern (20 bp):
TTTGTATGAATATTGTAATG
Found at i:2857162 original size:41 final size:41
Alignment explanation
Indices: 2857013--2857229 Score: 151
Period size: 41 Copynumber: 5.1 Consensus size: 41
2857003 TTTAGATTAG
*
2857013 AATTTTGTATGAATATTATAA-TGTTTT-TATGAATATTGT
1 AATTTTGTATGAATATTATAATTTTTTTGTATGAATATTGT
* * * * *
2857052 AATGTTGTATGAATATTGTAATTATTTTATAATTAA-ATTTGT
1 AATTTTGTATGAATATTATAATTTTTTTGT-ATGAATA-TTGT
* * *
2857094 -ATTTATAGTTTTG--GATTAGTAA-ATTTTTGTATGAATATTGT
1 AATTT-T-G-TATGAATATTA-TAATTTTTTTGTATGAATATTGT
*
2857135 AATTTTGTATAAATATTATAATTTTTTTGTATGAATATTGTAATATT
1 AATTTTGTATGAATATTATAATTTTTTTGTATGAATATTG------T
**
2857182 ATAGTTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
1 A-A-TTTTGTATGAATATTATAATTTTTTTGTATGAATATTGT
2857225 AATTT
1 AATTT
2857230 AGTAATTTGT
Statistics
Matches: 138, Mismatches: 19, Indels: 40
0.70 0.10 0.20
Matches are distributed among these distances:
39 21 0.15
40 9 0.07
41 38 0.28
42 23 0.17
43 6 0.04
44 3 0.02
47 2 0.01
48 1 0.01
49 35 0.25
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (41 bp):
AATTTTGTATGAATATTATAATTTTTTTGTATGAATATTGT
Found at i:2857163 original size:22 final size:22
Alignment explanation
Indices: 2857117--2857229 Score: 133
Period size: 22 Copynumber: 5.0 Consensus size: 22
2857107 GATTAGTAAA
2857117 TTTTTGTATGAATATTGTAA--
1 TTTTTGTATGAATATTGTAATT
* *
2857137 -TTTTGTATAAATATTATAATT
1 TTTTTGTATGAATATTGTAATT
2857158 TTTTTGTATGAATATTGTAATATT
1 TTTTTGTATGAATATTGT-A-ATT
*
2857182 ATAGTTTTGTATGAATATTGCAATT
1 -T--TTTTGTATGAATATTGTAATT
2857207 TTTTTGTATGAATATTGTAATT
1 TTTTTGTATGAATATTGTAATT
2857229 T
1 T
2857230 AGTAATTTGT
Statistics
Matches: 79, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
19 17 0.22
22 36 0.46
23 1 0.01
24 4 0.05
25 4 0.05
26 1 0.01
27 16 0.20
ACGTcount: A:0.31, C:0.01, G:0.12, T:0.56
Consensus pattern (22 bp):
TTTTTGTATGAATATTGTAATT
Found at i:2857180 original size:49 final size:49
Alignment explanation
Indices: 2857127--2857379 Score: 266
Period size: 49 Copynumber: 5.1 Consensus size: 49
2857117 TTTTTGTATG
* *
2857127 AATATTGTAATTTTGTATAAATATTATAATTTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
* * *
2857176 AATATTATAGTTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
*
2857225 AATTTAGTAATTTGTAATTTTGTATGAATATTAT-ATTTGTTTTGTATGAATATTGT
1 -A---A-T-A-TTGTAATTTTGTATGAATATTGTAATTT-TTTTGTATGAATATTGT
* * *
2857281 AATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATTAATATTGT
1 AATATTGTAATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
* *
2857330 AAT-TTGGGGATATATTG--T-AATATTGTAA-TTTTTTGTATGAATATTGT
1 AATATT--GTA-ATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
2857377 AAT
1 AAT
2857380 TATTTTATAA
Statistics
Matches: 174, Mismatches: 18, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
47 21 0.12
48 11 0.06
49 84 0.48
50 7 0.04
51 6 0.03
52 1 0.01
53 1 0.01
54 1 0.01
55 6 0.03
56 36 0.21
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (49 bp):
AATATTGTAATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
Found at i:2857240 original size:105 final size:105
Alignment explanation
Indices: 2857131--2857334 Score: 365
Period size: 105 Copynumber: 1.9 Consensus size: 105
2857121 TGTATGAATA
*
2857131 TTGTAATTTTGTATAAATATTATAATTT-TTTTGTATGAATATTGTAATATTATAGTTTTGTATG
1 TTGTAATTTTGTATAAATATTAT-ATTTGTTTTGTATGAATATTGTAATATTATAATTTTGTATG
2857195 AATATTGCAATTTTTTTGTATGAATATTGTAATTTAGTAAT
65 AATATTGCAATTTTTTTGTATGAATATTGTAATTTAGTAAT
*
2857236 TTGTAATTTTGTATGAATATTATATTTGTTTTGTATGAATATTGTAATATTATAATTTTGTATGA
1 TTGTAATTTTGTATAAATATTATATTTGTTTTGTATGAATATTGTAATATTATAATTTTGTATGA
*
2857301 ATATTGCAATTTTTTTGTATTAATATTGTAATTT
66 ATATTGCAATTTTTTTGTATGAATATTGTAATTT
2857335 GGGGATATAT
Statistics
Matches: 95, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
104 4 0.04
105 91 0.96
ACGTcount: A:0.31, C:0.01, G:0.12, T:0.55
Consensus pattern (105 bp):
TTGTAATTTTGTATAAATATTATATTTGTTTTGTATGAATATTGTAATATTATAATTTTGTATGA
ATATTGCAATTTTTTTGTATGAATATTGTAATTTAGTAAT
Found at i:2857328 original size:22 final size:22
Alignment explanation
Indices: 2857242--2857334 Score: 82
Period size: 22 Copynumber: 4.0 Consensus size: 22
2857232 TAATTTGTAA
2857242 TTTTGTATGAATATT--ATATTT
1 TTTTGTATGAATATTGCA-ATTT
*
2857263 GTTTTGTATGAATATTGTAATATTAT
1 -TTTTGTATGAATATTG-CA-ATT-T
2857289 AATTTTGTATGAATATTGCAATTT
1 --TTTTGTATGAATATTGCAATTT
* *
2857313 TTTTGTATTAATATTGTAATTT
1 TTTTGTATGAATATTGCAATTT
2857335 GGGGATATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
22 35 0.56
24 1 0.02
25 8 0.13
26 2 0.03
27 16 0.26
ACGTcount: A:0.30, C:0.01, G:0.12, T:0.57
Consensus pattern (22 bp):
TTTTGTATGAATATTGCAATTT
Found at i:2857569 original size:38 final size:39
Alignment explanation
Indices: 2857509--2857592 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 39
2857499 CATATAAAGT
2857509 TTATAACAAAAATTAAAAATCATTTCATTAAAAGTTTAA
1 TTATAACAAAAATTAAAAATCATTTCATTAAAAGTTTAA
* * *
2857548 TTATAA-AAAAGTTCAAAATCATTTTATTAAAAGTTTAA
1 TTATAACAAAAATTAAAAATCATTTCATTAAAAGTTTAA
2857586 TTATAAC
1 TTATAAC
2857593 TGATTTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 35 0.85
39 6 0.15
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.38
Consensus pattern (39 bp):
TTATAACAAAAATTAAAAATCATTTCATTAAAAGTTTAA
Found at i:2857654 original size:16 final size:15
Alignment explanation
Indices: 2857628--2857669 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
2857618 GTTAACTCAT
*
2857628 TTAATTTTTATATAA
1 TTAACTTTTATATAA
2857643 TGTAACTTTTATATAA
1 T-TAACTTTTATATAA
*
2857659 TTAATTTTTAT
1 TTAACTTTTAT
2857670 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (15 bp):
TTAACTTTTATATAA
Found at i:2861206 original size:22 final size:21
Alignment explanation
Indices: 2861163--2861207 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
2861153 TACCTAATTT
* *
2861163 TTTTCTTCTTTTCCTTTATTC
1 TTTTCTTCTCTTCCTTCATTC
*
2861184 TTTTCTTCTGCTTCCTTCCTTC
1 TTTTCTTCT-CTTCCTTCATTC
2861206 TT
1 TT
2861208 ATTTCTTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTCTTCTCTTCCTTCATTC
Found at i:2869931 original size:18 final size:18
Alignment explanation
Indices: 2869890--2869941 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
2869880 TGGTACAATA
*
2869890 ATTTTTATATTTTTTATG
1 ATTTTTATATTTTTTATC
*
2869908 AATTTTATATTTCTTTA-C
1 ATTTTTATATTT-TTTATC
*
2869926 ATTTTTTTAATTTTTT
1 ATTTTTAT-ATTTTTT
2869942 TACGACTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 20 0.71
19 8 0.29
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (18 bp):
ATTTTTATATTTTTTATC
Found at i:2870244 original size:88 final size:88
Alignment explanation
Indices: 2870133--2870338 Score: 258
Period size: 88 Copynumber: 2.4 Consensus size: 88
2870123 TTAAAGGACA
* ** *
2870133 TTTTTTTATGCATATTGGCAGTTCAAGTACTC-AATTAAGTGTAAAAAAAAA-AGAATCTTAATT
1 TTTTTTTATGCATTTTGAAAGTTCAAGTAC-CAAATTAAGTGTAAAAAAAAATAGAAGCTTAATT
* *
2870196 G-TTTTTCTTGAAAAAGTTTGAGAGC
65 GCTATTT-TTGAAAAAGCTTGAG-GC
*
2870221 TTTTTTTATGCATTTTGAAAGTTCAAGTACCAAATTAAGTGTAAAAAAAAATAGGAGCTTAATTG
1 TTTTTTTATGCATTTTGAAAGTTCAAGTACCAAATTAAGTGTAAAAAAAAATAGAAGCTTAATTG
*
2870286 CTATTTTTGAAAATGCTTGAGGC
66 CTATTTTTGAAAAAGCTTGAGGC
* * *
2870309 CTTTTTGATGCA-TTTGAAAGTTCAAATACC
1 TTTTTTTATGCATTTTGAAAGTTCAAGTACC
2870339 CAAGTACAAA
Statistics
Matches: 104, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
87 18 0.17
88 58 0.56
89 24 0.23
90 4 0.04
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (88 bp):
TTTTTTTATGCATTTTGAAAGTTCAAGTACCAAATTAAGTGTAAAAAAAAATAGAAGCTTAATTG
CTATTTTTGAAAAAGCTTGAGGC
Found at i:2870354 original size:87 final size:88
Alignment explanation
Indices: 2870175--2870354 Score: 188
Period size: 89 Copynumber: 2.1 Consensus size: 88
2870165 AATTAAGTGT
* * * * *
2870175 AAAAAAAAAAGAATCTTAATTGTTTTTCTTGAAAAAGTTTGAGAGCTTTTTTTATGCATTTTGAA
1 AAAAAAAAAAGAAGCTTAATTGTATTTCTTGAAAAAGCTTGAGAGCCTTTTTGATGCATTTTGAA
* * **
2870240 AGTTCAAGTACCAAATTAAGTGTA
66 AGTTCAAATACCAAAGTAAG-AAA
* * *
2870264 AAAAAAAATAGGAGCTTAATTGCTATTT-TTGAAAATGCTTGAG-GCCTTTTTGATGCA-TTTGA
1 AAAAAAAAAAGAAGCTTAATTG-TATTTCTTGAAAAAGCTTGAGAGCCTTTTTGATGCATTTTGA
* *
2870326 AAGTTCAAATACCCAAGT-ACAAA
65 AAGTTCAAATACCAAAGTAAGAAA
2870349 AAAAAA
1 AAAAAA
2870355 TTAGAGACTT
Statistics
Matches: 76, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
85 7 0.09
86 1 0.01
87 20 0.26
88 12 0.16
89 32 0.42
90 4 0.05
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (88 bp):
AAAAAAAAAAGAAGCTTAATTGTATTTCTTGAAAAAGCTTGAGAGCCTTTTTGATGCATTTTGAA
AGTTCAAATACCAAAGTAAGAAA
Found at i:2879508 original size:103 final size:103
Alignment explanation
Indices: 2879291--2879570 Score: 515
Period size: 103 Copynumber: 2.7 Consensus size: 103
2879281 GATTCCTCTT
*
2879291 GAGTGGGGAGTGAAATTAAATTGTATTCAAATCGAAGTTACCACTCTCAATACTTTTTGAGCATT
1 GAGTGGGGAGTGAAATTAGATTGTATTCAAATCGAAGTTACCACTCTCAATAC-TTTTGAGCATT
*
2879356 TCTACCTATTGAGCTTCTGATAAAGGATATCATTACATC
65 TCTACCTATTGAGCTTCCGATAAAGGATATCATTACATC
*
2879395 GAGTGGGGAGTGAAATTAGATTGTATTCAAATCGAAGTTACCACTCTCAATACTTCTGAGCATTT
1 GAGTGGGGAGTGAAATTAGATTGTATTCAAATCGAAGTTACCACTCTCAATACTTTTGAGCATTT
2879460 CTACCTATTGAGCTTCCGATAAAGGATATCATTACATC
66 CTACCTATTGAGCTTCCGATAAAGGATATCATTACATC
*
2879498 GAGTGAGGAGTGAAATTAGATTGTATTCAAATCGAAGTTACCACTCTCAATACTTTTGAGCATTT
1 GAGTGGGGAGTGAAATTAGATTGTATTCAAATCGAAGTTACCACTCTCAATACTTTTGAGCATTT
2879563 CTACCTAT
66 CTACCTAT
2879571 AAGCCTCCTT
Statistics
Matches: 171, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
103 119 0.70
104 52 0.30
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (103 bp):
GAGTGGGGAGTGAAATTAGATTGTATTCAAATCGAAGTTACCACTCTCAATACTTTTGAGCATTT
CTACCTATTGAGCTTCCGATAAAGGATATCATTACATC
Found at i:2887058 original size:27 final size:27
Alignment explanation
Indices: 2887028--2887079 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
2887018 CATATCGTAT
* * *
2887028 TCGTATTATTTTTATATGTTATAATCA
1 TCGTATTATCTTAATAGGTTATAATCA
*
2887055 TCGTGTTATCTTAATAGGTTATAAT
1 TCGTATTATCTTAATAGGTTATAAT
2887080 AATTTGTAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.52
Consensus pattern (27 bp):
TCGTATTATCTTAATAGGTTATAATCA
Found at i:2887361 original size:14 final size:14
Alignment explanation
Indices: 2887342--2887379 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
2887332 ACATATATTA
2887342 TTTATGATTTATAT
1 TTTATGATTTATAT
2887356 TTTATGATTTATAT
1 TTTATGATTTATAT
2887370 TTTATGATTT
1 TTTATGATTT
2887380 TACCTATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (14 bp):
TTTATGATTTATAT
Found at i:2889756 original size:20 final size:21
Alignment explanation
Indices: 2889733--2889772 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
2889723 TTTAAAAATA
2889733 AAAAATAA-AAAAAATATTTT
1 AAAAATAAGAAAAAATATTTT
*
2889753 AAAAATAAGAAAATATATTT
1 AAAAATAAGAAAAAATATTT
2889773 ATTATATTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (21 bp):
AAAAATAAGAAAAAATATTTT
Found at i:2890682 original size:88 final size:87
Alignment explanation
Indices: 2890459--2890772 Score: 341
Period size: 88 Copynumber: 3.6 Consensus size: 87
2890449 TAAGCCCTTA
* * * * *
2890459 TTTTTTTTGCACTCAATTGGGTATTTGAACTTTCAAAATGTAT-CAAAAAGACTTTCAAACTTAA
1 TTTTTTTT-CACTCAATTGGGCACTTGAACTGTCAAAATGTATAAAAAAAGACCTTCAAAC-TAA
* * *
2890523 AAATAAAATAAAATTAAACCCT-TGTT
64 AAA-AAAAAAAAATT-AAGCCTATG-C
* * * *
2890549 TTTTTTCTCTCACTTAATTGGGCACTTTAACTGCCAAAATGTATAAAAAAAGGCCTTCAAACTAA
1 TTTTTT-T-TCACTCAATTGGGCACTTGAACTGTCAAAATGTATAAAAAAAGACCTTCAAACTAA
2890614 AAAAAAAAAACAATTAAGCCTATGC
64 AAAAAAAAAA-AATTAAGCCTATGC
* * * *
2890639 TTTTTTTTCACTTAATTGGGCACTTGAACTGTCAAAATATATAAAAAAAGACCCTCAAACTTAAA
1 TTTTTTTTCACTCAATTGGGCACTTGAACTGTCAAAATGTATAAAAAAAGACCTTCAAACTAAAA
2890704 AAAAAAAAAA-T-AGCCTATGC
66 AAAAAAAAAATTAAGCCTATGC
* * * *
2890724 -TTTTTTTCACTCAATTGGGTACTTGAATTGTCAAAATGCATCAAAAAAG
1 TTTTTTTTCACTCAATTGGGCACTTGAACTGTCAAAATGTATAAAAAAAG
2890773 CCAGAGTCGG
Statistics
Matches: 195, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
84 43 0.22
85 9 0.05
86 1 0.01
87 2 0.01
88 60 0.31
89 1 0.01
90 23 0.12
91 41 0.21
92 15 0.08
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (87 bp):
TTTTTTTTCACTCAATTGGGCACTTGAACTGTCAAAATGTATAAAAAAAGACCTTCAAACTAAAA
AAAAAAAAAATTAAGCCTATGC
Found at i:2891217 original size:9 final size:9
Alignment explanation
Indices: 2891195--2891365 Score: 64
Period size: 9 Copynumber: 18.2 Consensus size: 9
2891185 AAAAAAGATA
2891195 ATAAAAATT
1 ATAAAAATT
2891204 AATAAAAATT
1 -ATAAAAATT
2891214 ATAAAAATT
1 ATAAAAATT
* **
2891223 ATTAATTTT
1 ATAAAAATT
2891232 CAATAAAAA-T
1 --ATAAAAATT
*
2891242 ATGAAAAAAT
1 AT-AAAAATT
*
2891252 -TAAAATTT
1 ATAAAAATT
*
2891260 ATTAAGAATT
1 A-TAAAAATT
* *
2891270 AGAAAAAAT
1 ATAAAAATT
2891279 AT-AAAATAT
1 ATAAAAAT-T
*
2891288 ATAGAAA-T
1 ATAAAAATT
*
2891296 ACAGGAAAATT
1 ATA--AAAATT
*
2891307 TTATAAAATT
1 ATA-AAAATT
*
2891317 ATAAAAAAT
1 ATAAAAATT
*
2891326 ATAAAGAAAT
1 ATAAA-AATT
2891336 AT-AAAATT
1 ATAAAAATT
*
2891344 CGTAAAAAATT
1 -AT-AAAAATT
*
2891355 ATAAAAGTT
1 ATAAAAATT
2891364 AT
1 AT
2891366 CGTACCAAAA
Statistics
Matches: 119, Mismatches: 27, Indels: 31
0.67 0.15 0.18
Matches are distributed among these distances:
8 17 0.14
9 51 0.43
10 39 0.33
11 12 0.10
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:2891258 original size:29 final size:29
Alignment explanation
Indices: 2891204--2891259 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
2891194 AATAAAAATT
*
2891204 AATAAAAATTATAAAAATTATTAATTTTC
1 AATAAAAATTATAAAAATTATAAATTTTC
2891233 AATAAAAA-TATGAAAAAATTA-AAATTT
1 AATAAAAATTAT--AAAAATTATAAATTT
2891260 ATTAAGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 3 0.12
29 13 0.54
30 8 0.33
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (29 bp):
AATAAAAATTATAAAAATTATAAATTTTC
Found at i:2893673 original size:9 final size:9
Alignment explanation
Indices: 2893651--2893821 Score: 64
Period size: 9 Copynumber: 18.2 Consensus size: 9
2893641 AAAAAAGATA
2893651 ATAAAAATT
1 ATAAAAATT
2893660 AATAAAAATT
1 -ATAAAAATT
2893670 ATAAAAATT
1 ATAAAAATT
* **
2893679 ATTAATTTT
1 ATAAAAATT
2893688 CAATAAAAA-T
1 --ATAAAAATT
*
2893698 ATGAAAAAAT
1 AT-AAAAATT
*
2893708 -TAAAATTT
1 ATAAAAATT
*
2893716 ATTAAGAATT
1 A-TAAAAATT
* *
2893726 AGAAAAAAT
1 ATAAAAATT
2893735 AT-AAAATAT
1 ATAAAAAT-T
*
2893744 ATAGAAA-T
1 ATAAAAATT
*
2893752 ACAGGAAAATT
1 ATA--AAAATT
*
2893763 TTATAAAATT
1 ATA-AAAATT
*
2893773 ATAAAAAAT
1 ATAAAAATT
*
2893782 ATAAAGAAAT
1 ATAAA-AATT
2893792 AT-AAAATT
1 ATAAAAATT
*
2893800 CGTAAAAAATT
1 -AT-AAAAATT
*
2893811 ATAAAAGTT
1 ATAAAAATT
2893820 AT
1 AT
2893822 CGTACCAAAA
Statistics
Matches: 119, Mismatches: 27, Indels: 31
0.67 0.15 0.18
Matches are distributed among these distances:
8 17 0.14
9 51 0.43
10 39 0.33
11 12 0.10
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:2893714 original size:29 final size:29
Alignment explanation
Indices: 2893660--2893715 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
2893650 AATAAAAATT
*
2893660 AATAAAAATTATAAAAATTATTAATTTTC
1 AATAAAAATTATAAAAATTATAAATTTTC
2893689 AATAAAAA-TATGAAAAAATTA-AAATTT
1 AATAAAAATTAT--AAAAATTATAAATTT
2893716 ATTAAGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 3 0.12
29 13 0.54
30 8 0.33
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (29 bp):
AATAAAAATTATAAAAATTATAAATTTTC
Found at i:2897731 original size:29 final size:29
Alignment explanation
Indices: 2897672--2897731 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
2897662 TTATCAATTC
* * **
2897672 TAAGGATTTTTGTGTTTGACTTAACGGCA
1 TAAGGATTTTTGGGTTTGAATTAACAACA
*
2897701 TAAGGATTTTTGGGTTTGAATTTACAACA
1 TAAGGATTTTTGGGTTTGAATTAACAACA
2897730 TA
1 TA
2897732 TGTGATGAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (29 bp):
TAAGGATTTTTGGGTTTGAATTAACAACA
Found at i:2904606 original size:19 final size:19
Alignment explanation
Indices: 2904551--2904587 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
2904541 AAATAAACAT
*
2904551 TAAAAAATTATTTTAAAAA
1 TAAAAAAATATTTTAAAAA
2904570 TAAAAAAATATTTTAAAA
1 TAAAAAAATATTTTAAAA
2904588 GTATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAAAAAATATTTTAAAAA
Found at i:2914402 original size:80 final size:80
Alignment explanation
Indices: 2914232--2914588 Score: 588
Period size: 80 Copynumber: 4.4 Consensus size: 80
2914222 TTTTAGACCG
** * ** *
2914232 GACAAATATTCTAATTAATATTTAAAATTTTTAAAAAATAAAATTAAACACATCTCAGTTTTTTT
1 GACAAATATTCTAATTAATATTTAAAA-AATAAAAAAATAAAAAAAAAAACATCTCA--TTTTTT
* * *
2914297 TGGAGGAATTTAAAGCCC
63 TCGAGGAATTTAAAACCT
*
2914315 GAAAAATATTCTAATTAATATTTAAAAAATAAAAAAATAAAAAAAAAAACATCTCATTTTTTTCG
1 GACAAATATTCTAATTAATATTTAAAAAATAAAAAAATAAAAAAAAAAACATCTCATTTTTTTCG
2914380 AGGAATTTAAAACCT
66 AGGAATTTAAAACCT
2914395 GACAAATATTCTAATTAATATTTAAAAAATAAAAAAATAAAAAAAAAAACATCTCATTTTTTTCG
1 GACAAATATTCTAATTAATATTTAAAAAATAAAAAAATAAAAAAAAAAACATCTCATTTTTTTCG
2914460 AGGAATTTAAAACCT
66 AGGAATTTAAAACCT
2914475 GACAAATATTCTAATTAATATTTAAAAAATAAAAAAATAAAAAAAAAAACATCTCATTTTTTTCG
1 GACAAATATTCTAATTAATATTTAAAAAATAAAAAAATAAAAAAAAAAACATCTCATTTTTTTCG
2914540 AGGAATTTAAAACCT
66 AGGAATTTAAAACCT
*
2914555 GACAAATATTCTAATTAATATTTAAAAATTAAAA
1 GACAAATATTCTAATTAATATTTAAAAAATAAAA
2914589 CACATCTCAG
Statistics
Matches: 262, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
80 213 0.81
82 23 0.09
83 26 0.10
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (80 bp):
GACAAATATTCTAATTAATATTTAAAAAATAAAAAAATAAAAAAAAAAACATCTCATTTTTTTCG
AGGAATTTAAAACCT
Found at i:2925358 original size:31 final size:31
Alignment explanation
Indices: 2925323--2925494 Score: 109
Period size: 31 Copynumber: 5.2 Consensus size: 31
2925313 AGGGTAGTGG
2925323 TCAAATATAAAATTTAAGCATAATAGAGAGA
1 TCAAATATAAAATTTAAGCATAATAGAGAGA
* * *
2925354 TCAAA-ATTAAAATTTAGGCA-AATCTAAAGGGTAGTGG
1 TCAAATA-TAAAATTTAAGCATAA--T--A--G-AGAGA
2925391 TCAAATATAAAATTTAAGCATAATAGAGAGA
1 TCAAATATAAAATTTAAGCATAATAGAGAGA
* * *
2925422 TCAAA-ATTAAAATTTAGGCA-AATCTAAAGGGTAGTGG
1 TCAAATA-TAAAATTTAAGCATAA--T--A--G-AGAGA
*
2925459 TCAAATATAAAATTTAAGCATAATAGAGGGA
1 TCAAATATAAAATTTAAGCATAATAGAGAGA
2925490 TCAAA
1 TCAAA
2925495 ATTGAAGTTT
Statistics
Matches: 109, Mismatches: 12, Indels: 40
0.68 0.07 0.25
Matches are distributed among these distances:
30 6 0.06
31 45 0.41
32 4 0.04
34 4 0.04
36 4 0.04
37 40 0.37
38 6 0.06
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.26
Consensus pattern (31 bp):
TCAAATATAAAATTTAAGCATAATAGAGAGA
Found at i:2925382 original size:68 final size:68
Alignment explanation
Indices: 2925304--2925497 Score: 379
Period size: 68 Copynumber: 2.9 Consensus size: 68
2925294 TAAAGCAAGA
2925304 CAAATCTAAAGGGTAGTGGTCAAATATAAAATTTAAGCATAATAGAGAGATCAAAATTAAAATTT
1 CAAATCTAAAGGGTAGTGGTCAAATATAAAATTTAAGCATAATAGAGAGATCAAAATTAAAATTT
2925369 AGG
66 AGG
2925372 CAAATCTAAAGGGTAGTGGTCAAATATAAAATTTAAGCATAATAGAGAGATCAAAATTAAAATTT
1 CAAATCTAAAGGGTAGTGGTCAAATATAAAATTTAAGCATAATAGAGAGATCAAAATTAAAATTT
2925437 AGG
66 AGG
*
2925440 CAAATCTAAAGGGTAGTGGTCAAATATAAAATTTAAGCATAATAGAGGGATCAAAATT
1 CAAATCTAAAGGGTAGTGGTCAAATATAAAATTTAAGCATAATAGAGAGATCAAAATT
2925498 GAAGTTTAAC
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 125 1.00
ACGTcount: A:0.48, C:0.08, G:0.18, T:0.26
Consensus pattern (68 bp):
CAAATCTAAAGGGTAGTGGTCAAATATAAAATTTAAGCATAATAGAGAGATCAAAATTAAAATTT
AGG
Found at i:2925404 original size:37 final size:37
Alignment explanation
Indices: 2925357--2925474 Score: 128
Period size: 37 Copynumber: 3.4 Consensus size: 37
2925347 AGAGAGATCA
2925357 AAAT-TAAAATTTAGGCAAATCTAAAGGGTAGTGGTC
1 AAATATAAAATTTAGGCAAATCTAAAGGGTAGTGGTC
* * *
2925393 AAATATAAAATTTAAGC--A--TAATA--G-AGAGATC
1 AAATATAAAATTTAGGCAAATCTAA-AGGGTAGTGGTC
2925424 AAA-ATTAAAATTTAGGCAAATCTAAAGGGTAGTGGTC
1 AAATA-TAAAATTTAGGCAAATCTAAAGGGTAGTGGTC
2925461 AAATATAAAATTTA
1 AAATATAAAATTTA
2925475 AGCATAATAG
Statistics
Matches: 65, Mismatches: 6, Indels: 21
0.71 0.07 0.23
Matches are distributed among these distances:
30 1 0.02
31 19 0.29
32 1 0.02
33 4 0.06
34 2 0.03
35 4 0.06
36 5 0.08
37 28 0.43
38 1 0.02
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (37 bp):
AAATATAAAATTTAGGCAAATCTAAAGGGTAGTGGTC
Found at i:2926587 original size:130 final size:130
Alignment explanation
Indices: 2926404--2926718 Score: 474
Period size: 130 Copynumber: 2.4 Consensus size: 130
2926394 CTGTATTTGG
* **
2926404 CAGTGGAATAGAGTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCAAAGATG
1 CAGTGGAATAGAGTAAAGAACACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCAAAGATG
*
2926469 GCGGATTTTACCTCCCCGATTACGGTGGAGTACATTAAAG-TCAATAGTTCTATCTCTCTGGGCA
66 GCGGATTTTACCTCCCCGATTACGGTGGAGTACATTAAAGCT-AATAGTTCTATCTCTCGGGGCA
2926533 A
130 A
*
2926534 CAGTGGAATAGACG-AAAGAA-ACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGA
1 CAGTGGAATAGA-GTAAAGAACA-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCAAAGA
* * **
2926597 TGGCGGATTTTACCTCCCTGATTACGGTGGAGTACATTGAAGCTGGTAGTTCTATCTCTCGGGGC
64 TGGCGGATTTTACCTCCCCGATTACGGTGGAGTACATTAAAGCTAATAGTTCTATCTCTCGGGGC
2926662 AA
129 AA
* * *
2926664 CAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 CAGTGGAATAGAGTAAAGAACACAGATCTTATCTCCCTAAGCAATAGTGGAGCAG
2926719 ATCACATCCA
Statistics
Matches: 169, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
129 2 0.01
130 164 0.97
131 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (130 bp):
CAGTGGAATAGAGTAAAGAACACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCAAAGATG
GCGGATTTTACCTCCCCGATTACGGTGGAGTACATTAAAGCTAATAGTTCTATCTCTCGGGGCAA
Found at i:2928306 original size:6 final size:6
Alignment explanation
Indices: 2928297--2928360 Score: 53
Period size: 6 Copynumber: 10.8 Consensus size: 6
2928287 TTTATTACTA
* *
2928297 TTATTT TTATTT TT-TATT TTA-TT TTA-TT TTATTT TTACTT TTACTT
1 TTATTT TTATTT TTAT-TT TTATTT TTATTT TTATTT TTATTT TTATTT
* *
2928343 TTACGTT TTATTT ATATT
1 TTA-TTT TTATTT TTATT
2928361 AAACATTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
5 11 0.22
6 34 0.68
7 5 0.10
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:2928311 original size:22 final size:22
Alignment explanation
Indices: 2928286--2928332 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
2928276 CATTTAACAG
2928286 TTTTATTACTATTAT-TTTTATT
1 TTTTATT-CTATTATATTTTATT
* *
2928308 TTTTATTTTATTTTATTTTATT
1 TTTTATTCTATTATATTTTATT
2928330 TTT
1 TTT
2928333 ACTTTTACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTATTCTATTATATTTTATT
Found at i:2928338 original size:12 final size:11
Alignment explanation
Indices: 2928301--2928360 Score: 59
Period size: 12 Copynumber: 5.2 Consensus size: 11
2928291 TTACTATTAT
2928301 TTTTATTTTTTA
1 TTTTA-TTTTTA
2928313 TTTTA-TTTTA
1 TTTTATTTTTA
2928323 TTTTATTTTTA
1 TTTTATTTTTA
*
2928334 CTTTTACTTTTA
1 -TTTTATTTTTA
*
2928346 CGTTTTATTTATA
1 --TTTTATTTTTA
2928359 TT
1 TT
2928361 AAACATTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
10 10 0.24
11 7 0.17
12 15 0.37
13 9 0.22
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:2930790 original size:23 final size:23
Alignment explanation
Indices: 2930746--2930790 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
2930736 TTGCAGTTTC
* *
2930746 AAATATTAATCTATATATATTTT
1 AAATATTAATCTAAATAGATTTT
2930769 AAATATTAAT-TAAAATAGATTT
1 AAATATTAATCT-AAATAGATTT
2930791 ATAAGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 1 0.05
23 18 0.95
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
AAATATTAATCTAAATAGATTTT
Found at i:2937217 original size:35 final size:36
Alignment explanation
Indices: 2937157--2937228 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 36
2937147 TCTATTATTA
2937157 TTATTTGAATAAACTTAACAGTTTTGTCTGTTGATAT
1 TTATTTGAAT-AACTTAACAGTTTTGTCTGTTGATAT
*
2937194 TTATTTGAAT-ACTTAACATTTTTGTCTGTTGATAT
1 TTATTTGAATAACTTAACAGTTTTGTCTGTTGATAT
2937229 ACTATTTGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 24 0.71
37 10 0.29
ACGTcount: A:0.28, C:0.08, G:0.12, T:0.51
Consensus pattern (36 bp):
TTATTTGAATAACTTAACAGTTTTGTCTGTTGATAT
Found at i:2938487 original size:39 final size:39
Alignment explanation
Indices: 2938439--2938547 Score: 128
Period size: 44 Copynumber: 2.6 Consensus size: 39
2938429 TTTTTTCCTT
* * *
2938439 ATACTATTACACCTCTATTCCATTCAACCAAACACAAGA
1 ATACCATTACGCCTCTATTCCATTCAACCAAACAAAAGA
2938478 ATACCATTACGCCTCTATTCCATTCCATTCAACCAAACAAAAGA
1 ATACCATTACGCCTC---T--ATTCCATTCAACCAAACAAAAGA
2938522 ATTACCTATTACGCCTCTATTCCATT
1 A-TACC-ATTACGCCTCTATTCCATT
2938548 ACGCATCTAT
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
39 13 0.22
41 8 0.13
42 1 0.02
43 1 0.02
44 23 0.38
45 4 0.07
46 10 0.17
ACGTcount: A:0.36, C:0.31, G:0.04, T:0.29
Consensus pattern (39 bp):
ATACCATTACGCCTCTATTCCATTCAACCAAACAAAAGA
Found at i:2938522 original size:44 final size:46
Alignment explanation
Indices: 2938455--2938547 Score: 163
Period size: 44 Copynumber: 2.1 Consensus size: 46
2938445 TTACACCTCT
*
2938455 ATTCCATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
2938499 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
2938545 ATT
1 ATT
2938548 ACGCATCTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 23 0.50
45 4 0.09
46 19 0.41
ACGTcount: A:0.37, C:0.31, G:0.04, T:0.28
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
Found at i:2938550 original size:16 final size:16
Alignment explanation
Indices: 2938529--2938565 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
2938519 AGAATTACCT
*
2938529 ATTACGCCTCTATTCC
1 ATTACGCATCTATTCC
2938545 ATTACGCATCTATTCC
1 ATTACGCATCTATTCC
2938561 ATTAC
1 ATTAC
2938566 AGTGAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.24, C:0.32, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCATCTATTCC
Found at i:2943553 original size:24 final size:24
Alignment explanation
Indices: 2943526--2943577 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
2943516 TTAGTAAGTC
*
2943526 AAATAAAC-TATACTAATAAATGCT
1 AAAT-AACTTATACTAATAAATACT
*
2943550 AAATATCTTATACTAATAAATACT
1 AAATAACTTATACTAATAAATACT
2943574 AAAT
1 AAAT
2943578 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAACTTATACTAATAAATACT
Found at i:2944355 original size:12 final size:12
Alignment explanation
Indices: 2944338--2944362 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2944328 CATATATCAT
2944338 CACTTTCCTCTA
1 CACTTTCCTCTA
2944350 CACTTTCCTCTA
1 CACTTTCCTCTA
2944362 C
1 C
2944363 TAAAGCAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.44, G:0.00, T:0.40
Consensus pattern (12 bp):
CACTTTCCTCTA
Found at i:2946458 original size:18 final size:19
Alignment explanation
Indices: 2946425--2946460 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
2946415 GGTCAACTTA
2946425 TATTAGTTCATATTTTATT
1 TATTAGTTCATATTTTATT
*
2946444 TATTA-TTCATTTTTTAT
1 TATTAGTTCATATTTTAT
2946461 ACATTGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.67
Consensus pattern (19 bp):
TATTAGTTCATATTTTATT
Found at i:2950723 original size:21 final size:21
Alignment explanation
Indices: 2950699--2950788 Score: 64
Period size: 21 Copynumber: 4.4 Consensus size: 21
2950689 TCAAGCTAAT
2950699 AATCGATTTAAACATATAAAC
1 AATCGATTTAAACATATAAAC
* * *
2950720 AATCGATTCAAA-A-AAAGAAG
1 AATCGATTTAAACATATA-AAC
* * *
2950740 AAGCAGTATTT-CAC-CATA-AC
1 AATC-G-ATTTAAACATATAAAC
2950760 AATCGATTTAAACATATAAAC
1 AATCGATTTAAACATATAAAC
2950781 AATCGATT
1 AATCGATT
2950789 CAAAAGAAAC
Statistics
Matches: 50, Mismatches: 11, Indels: 16
0.65 0.14 0.21
Matches are distributed among these distances:
18 4 0.08
19 5 0.10
20 13 0.26
21 23 0.46
22 5 0.10
ACGTcount: A:0.50, C:0.16, G:0.09, T:0.26
Consensus pattern (21 bp):
AATCGATTTAAACATATAAAC
Found at i:2950766 original size:61 final size:61
Alignment explanation
Indices: 2950676--2950793 Score: 193
Period size: 61 Copynumber: 1.9 Consensus size: 61
2950666 ATTGATTTAA
* *
2950676 AAGAAGCAATATTTCAAGCTAATAATCGATTTAAACATATAAACAATCGATTCAAAAAAAG
1 AAGAAGCAATATTTCAACCTAACAATCGATTTAAACATATAAACAATCGATTCAAAAAAAG
*
2950737 AAGAAGCAGTATTTC-ACCATAACAATCGATTTAAACATATAAACAATCGATTCAAAA
1 AAGAAGCAATATTTCAACC-TAACAATCGATTTAAACATATAAACAATCGATTCAAAA
2950794 GAAACAGTAC
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
60 2 0.04
61 51 0.96
ACGTcount: A:0.51, C:0.15, G:0.09, T:0.25
Consensus pattern (61 bp):
AAGAAGCAATATTTCAACCTAACAATCGATTTAAACATATAAACAATCGATTCAAAAAAAG
Found at i:2950802 original size:55 final size:56
Alignment explanation
Indices: 2950662--2950829 Score: 164
Period size: 61 Copynumber: 3.0 Consensus size: 56
2950652 CATGCTACAT
* * * * * *
2950662 AACAATTGATTTAAAAGAAGCAATATTTCAAGC-TAATAATCGATTTAAACATATA
1 AACAATCGATTCAAAAGAAACAGTATTTCAAACATAACAATCGATTTAAACATATA
*
2950717 AACAATCGATTCAAAAAAAGAAGAAGCAGTATTTC-ACCATAACAATCGATTTAAACATATA
1 AACAATCGATTC---AAAAG-A-AA-CAGTATTTCAAACATAACAATCGATTTAAACATATA
* * *
2950778 AACAATCGATTCAAAAGAAACAGTA-CTCTAACATGAC-ATCGATTTAAACATA
1 AACAATCGATTCAAAAGAAACAGTATTTCAAACATAACAATCGATTTAAACATA
2950830 CAAAGGGGCC
Statistics
Matches: 96, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
54 17 0.18
55 21 0.22
56 2 0.02
57 1 0.01
58 10 0.10
59 1 0.01
60 3 0.03
61 41 0.43
ACGTcount: A:0.49, C:0.15, G:0.10, T:0.26
Consensus pattern (56 bp):
AACAATCGATTCAAAAGAAACAGTATTTCAAACATAACAATCGATTTAAACATATA
Found at i:2951407 original size:13 final size:13
Alignment explanation
Indices: 2951364--2951412 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
2951354 TTATCATTTC
* *
2951364 TTTTGAGAAATAG
1 TTTTGAAAAATAT
* *
2951377 TTTGGAAAAGTGAT
1 TTTTGAAAAAT-AT
2951391 TTTTGAAAAATAT
1 TTTTGAAAAATAT
2951404 TTTTGAAAA
1 TTTTGAAAA
2951413 GTTTAGTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
13 19 0.66
14 10 0.34
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (13 bp):
TTTTGAAAAATAT
Found at i:2951646 original size:24 final size:24
Alignment explanation
Indices: 2951612--2951657 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
2951602 TATATGAAAT
* *
2951612 ATAAATTTTAAATATTTTTAAGTA
1 ATAAATATTAAATATTTATAAGTA
*
2951636 ATAAATATTAATTATTTATAAG
1 ATAAATATTAAATATTTATAAG
2951658 ATTTAATTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
ATAAATATTAAATATTTATAAGTA
Found at i:2954159 original size:6 final size:6
Alignment explanation
Indices: 2954113--2954158 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
2954103 TTTTGGAACC
*
2954113 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTAT TTTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTT
2954159 AAAAAAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.02, C:0.00, G:0.13, T:0.85
Consensus pattern (6 bp):
TTTTGT
Found at i:2964387 original size:6 final size:6
Alignment explanation
Indices: 2964376--2964401 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
2964366 ACAACATAAT
2964376 AACTAA AACTAA AACTAA AACTAA AA
1 AACTAA AACTAA AACTAA AACTAA AA
2964402 TCAATTGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (6 bp):
AACTAA
Found at i:2970683 original size:3 final size:3
Alignment explanation
Indices: 2970675--2970704 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
2970665 TCTGAATTTG
2970675 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
2970705 AATGGTACTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:2972823 original size:18 final size:18
Alignment explanation
Indices: 2972800--2972834 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2972790 ATTCCATTCG
* *
2972800 AAACTCTGACTCTGTTGA
1 AAACTCTAACCCTGTTGA
2972818 AAACTCTAACCCTGTTG
1 AAACTCTAACCCTGTTG
2972835 GACAAGTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (18 bp):
AAACTCTAACCCTGTTGA
Found at i:2976643 original size:22 final size:23
Alignment explanation
Indices: 2976613--2976656 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
2976603 TTACGTAATT
2976613 TATAATATATAA-AAATTAAATC
1 TATAATATATAATAAATTAAATC
* *
2976635 TATAGTATATAATAATTTAAAT
1 TATAATATATAATAAATTAAAT
2976657 ATTAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
TATAATATATAATAAATTAAATC
Found at i:2981946 original size:2 final size:2
Alignment explanation
Indices: 2981939--2981963 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2981929 TTGAATAGTA
2981939 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2981964 AATAACCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2982101 original size:2 final size:2
Alignment explanation
Indices: 2982094--2982118 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2982084 TTGAATAGTA
2982094 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2982119 AATAACCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2982164 original size:155 final size:156
Alignment explanation
Indices: 2981882--2982192 Score: 615
Period size: 155 Copynumber: 2.0 Consensus size: 156
2981872 CGGAAAAGGA
2981882 GGAGTTATGTCTGGTTGTCTATCATCTTTACACAAGGCCAATGTCATTTGAATAGTAATATATAT
1 GGAGTTATGTCTGGTTGTCTATCATCTTTACACAAGGCCAATGTCATTTGAATAGTAATATATAT
2981947 ATATATATATATATATAAATAACCTTTCTAAAAGGGATGGAAAAGTTGTTAAGGTGGCCCCAGTT
66 ATATATATATATATATAAATAACCTTTCTAAAAGGGATGGAAAAGTTGTTAAGGTGGCCCCAGTT
2982012 TGCTCCCTTTTTTTGG-CTTTTTTTT
131 TGCTCCCTTTTTTTGGCCTTTTTTTT
2982037 GGAGTTATGTCTGGTTGTCTATCATCTTTACACAAGGCCAATGTCATTTGAATAGTAATATATAT
1 GGAGTTATGTCTGGTTGTCTATCATCTTTACACAAGGCCAATGTCATTTGAATAGTAATATATAT
2982102 ATATATATATATATATAAATAACCTTTCTAAAAGGGATGGAAAAGTTGTTAAGGTGGCCCCAGTT
66 ATATATATATATATATAAATAACCTTTCTAAAAGGGATGGAAAAGTTGTTAAGGTGGCCCCAGTT
2982167 TGCTCCCTTTTTTTGGCCTTTTTTTT
131 TGCTCCCTTTTTTTGGCCTTTTTTTT
2982193 ATTTTACCTT
Statistics
Matches: 155, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
155 146 0.94
156 9 0.06
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (156 bp):
GGAGTTATGTCTGGTTGTCTATCATCTTTACACAAGGCCAATGTCATTTGAATAGTAATATATAT
ATATATATATATATATAAATAACCTTTCTAAAAGGGATGGAAAAGTTGTTAAGGTGGCCCCAGTT
TGCTCCCTTTTTTTGGCCTTTTTTTT
Found at i:2983463 original size:2 final size:2
Alignment explanation
Indices: 2983456--2983485 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2983446 TCATGTTTAA
2983456 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2983486 TTGTTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2986444 original size:20 final size:20
Alignment explanation
Indices: 2986419--2986458 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
2986409 AGTAAAATGA
*
2986419 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
2986439 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
2986459 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:2991526 original size:31 final size:31
Alignment explanation
Indices: 2991460--2991526 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
2991450 AACAACTTGG
* * *
2991460 TGACTTAAATAAAAACTTTTGAATAGTTTAG
1 TGACTTAAATAAAAACTTTTGAATACTTCAA
* *
2991491 TGACTTAAAT-GAAAGTTTTCGAATACTTCAA
1 TGACTTAAATAAAAACTTTT-GAATACTTCAA
2991522 TGACT
1 TGACT
2991527 ATTTTATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTGAATACTTCAA
Found at i:2993803 original size:28 final size:28
Alignment explanation
Indices: 2993744--2993803 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
2993734 ATCCAAATTG
* * * *
2993744 CAAAATTTATGAAAGCTTTTGTGATTGG
1 CAAAATTTATAAAAGCTTTTGAGACTGA
2993772 CAAAATTTATAAAAGCTTTTGAGACTGA
1 CAAAATTTATAAAAGCTTTTGAGACTGA
2993800 CAAA
1 CAAA
2993804 CTACTATGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (28 bp):
CAAAATTTATAAAAGCTTTTGAGACTGA
Found at i:3000951 original size:22 final size:24
Alignment explanation
Indices: 3000924--3000967 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
3000914 ATTATGCCTT
*
3000924 TTTTAAAGC-TTTTTT-TTTTCCC
1 TTTTAAACCATTTTTTGTTTTCCC
3000946 TTTTAAACCATTTTTTGTTTTC
1 TTTTAAACCATTTTTTGTTTTC
3000968 TTCTAGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 6 0.32
24 5 0.26
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.64
Consensus pattern (24 bp):
TTTTAAACCATTTTTTGTTTTCCC
Found at i:3005276 original size:14 final size:15
Alignment explanation
Indices: 3005246--3005278 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
3005236 TATAAAAAAT
*
3005246 TTAAAATAAGTTTAA
1 TTAAAATAAGATTAA
3005261 TTAAAATAA-ATTAA
1 TTAAAATAAGATTAA
3005275 TTAA
1 TTAA
3005279 GTAATTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
TTAAAATAAGATTAA
Found at i:3011933 original size:61 final size:61
Alignment explanation
Indices: 3011863--3011991 Score: 190
Period size: 61 Copynumber: 2.1 Consensus size: 61
3011853 CACTCATGAT
* **
3011863 CAAAAAAGAAAAAAAAAACATAGTT-GAGTGATTATTTTGTAACTTTTCATAGTTTGG-TAAC
1 CAAAAAAGAAAAAAAAAACATAATTAG-GTGACCATTTTGTAACTTTTCATAG-TTGGATAAC
*
3011924 CAAAAAAGAAAAAAAAAACATAATTAGGTGACCATTTTGTAACTTTTCATAGTTGGATGAC
1 CAAAAAAGAAAAAAAAAACATAATTAGGTGACCATTTTGTAACTTTTCATAGTTGGATAAC
3011985 CAAAAAA
1 CAAAAAA
3011992 TAAGAGTGAC
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
60 4 0.06
61 57 0.92
62 1 0.02
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (61 bp):
CAAAAAAGAAAAAAAAAACATAATTAGGTGACCATTTTGTAACTTTTCATAGTTGGATAAC
Found at i:3018327 original size:59 final size:60
Alignment explanation
Indices: 3018254--3018385 Score: 185
Period size: 60 Copynumber: 2.2 Consensus size: 60
3018244 CTACAACATA
* * * * *
3018254 GGTCAGCCAACTATTG-TCCTTTTCTTTTTTGGTCACCCAACTACCAATTTTTTTAATTT
1 GGTCACCCAACTATTGCCCCTTTTCTCTTTTGGTCACCCAACTACCAATTTATTAAATTT
* *
3018313 GGTCACCCAACTATTGCCCCTTTTCTCTTTTGGTCACCTAACTATCAATTTATTAAATTT
1 GGTCACCCAACTATTGCCCCTTTTCTCTTTTGGTCACCCAACTACCAATTTATTAAATTT
*
3018373 GGTCACTCAACTA
1 GGTCACCCAACTA
3018386 ATTGAGATTG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 15 0.23
60 49 0.77
ACGTcount: A:0.23, C:0.26, G:0.10, T:0.42
Consensus pattern (60 bp):
GGTCACCCAACTATTGCCCCTTTTCTCTTTTGGTCACCCAACTACCAATTTATTAAATTT
Found at i:3020527 original size:5 final size:5
Alignment explanation
Indices: 3020517--3020547 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
3020507 AAAATCTCAA
3020517 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
3020548 GAGACTAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:3023044 original size:21 final size:21
Alignment explanation
Indices: 3023015--3023056 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
3023005 TTATTTTTTA
3023015 GAAATATTTATGTAAAAAATTT
1 GAAATATTTAT-TAAAAAATTT
*
3023037 GAAA-ATTTATTAAATAATTT
1 GAAATATTTATTAAAAAATTT
3023057 TCAAAAATCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 6 0.32
22 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (21 bp):
GAAATATTTATTAAAAAATTT
Found at i:3023062 original size:21 final size:21
Alignment explanation
Indices: 3023020--3023062 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
3023010 TTTTAGAAAT
*
3023020 ATTTATGTAAAAAATTTGAAA
1 ATTTATGTAAAAAATTTCAAA
*
3023041 ATTTAT-TAAATAATTTTCAAA
1 ATTTATGTAAA-AAATTTCAAA
3023062 A
1 A
3023063 ATCCATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (21 bp):
ATTTATGTAAAAAATTTCAAA
Found at i:3026369 original size:23 final size:23
Alignment explanation
Indices: 3026334--3026377 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
3026324 TGATTACGTG
3026334 AATGCAATATTTTCAAAAAACAA
1 AATGCAATATTTTCAAAAAACAA
*
3026357 AATGCAGAT-TTTTCAGAAAAC
1 AATGCA-ATATTTTCAAAAAAC
3026378 TTCCTACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (23 bp):
AATGCAATATTTTCAAAAAACAA
Found at i:3026543 original size:46 final size:47
Alignment explanation
Indices: 3026491--3026605 Score: 114
Period size: 46 Copynumber: 2.5 Consensus size: 47
3026481 ATTGCTAGAT
* *
3026491 CAGATATATGTGGTGAAGCCACTAT-ATTGCAG-CTAAGCTGCCATAA
1 CAGATATATGTGGTGAAGCCACTATAAATGCAGTC-AAGCTGCCAGAA
* * *
3026537 CAGATATCTGTGGTCG-AGCCACCATAAATGTAGTCAAGCTGCCAGAA
1 CAGATATATGTGGT-GAAGCCACTATAAATGCAGTCAAGCTGCCAGAA
* *
3026584 CAGA-A-ATGTGGTTAAACCACTA
1 CAGATATATGTGGTGAAGCCACTA
3026606 GATAGTGCAG
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
45 12 0.21
46 22 0.39
47 21 0.38
48 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (47 bp):
CAGATATATGTGGTGAAGCCACTATAAATGCAGTCAAGCTGCCAGAA
Found at i:3029516 original size:12 final size:11
Alignment explanation
Indices: 3029499--3029547 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 11
3029489 GAACAATTCA
3029499 ATTAAATAAATT
1 ATTAAA-AAATT
3029511 ATTAAAAAATT
1 ATTAAAAAATT
3029522 A-TAAAAAA-T
1 ATTAAAAAATT
*
3029531 A-GAAAAAA-T
1 ATTAAAAAATT
3029540 ATTAAAAA
1 ATTAAAAA
3029548 TCAATTGAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 10 0.29
10 12 0.35
11 6 0.18
12 6 0.18
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (11 bp):
ATTAAAAAATT
Found at i:3031925 original size:28 final size:28
Alignment explanation
Indices: 3031889--3031946 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
3031879 AATATAAATA
3031889 AATAATGAGCAAAAAATGTACAAATATG
1 AATAATGAGCAAAAAATGTACAAATATG
*
3031917 AATAATGAGCGAAAAATGTACAAATATG
1 AATAATGAGCAAAAAATGTACAAATATG
3031945 AA
1 AA
3031947 CAACATAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.57, C:0.07, G:0.16, T:0.21
Consensus pattern (28 bp):
AATAATGAGCAAAAAATGTACAAATATG
Done.