Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 11 of 75
Found at i:3032150 original size:12 final size:12
Alignment explanation
Indices: 3032133--3032157 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3032123 ACTATAAGTC
3032133 ATAATAAAATAA
1 ATAATAAAATAA
3032145 ATAATAAAATAA
1 ATAATAAAATAA
3032157 A
1 A
3032158 ATAAAGGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAATAAAATAA
Found at i:3033784 original size:44 final size:44
Alignment explanation
Indices: 3033700--3034121 Score: 346
Period size: 44 Copynumber: 9.5 Consensus size: 44
3033690 TCATTCTAAC
* * * * *
3033700 CCACTACAACTTTAGAGG-TATAGGATTTGTTGCTTCAATCTACT
1 CCACTGCAACTTTAG-GGAGATAAGATTTGTAGCTTTAATCTACT
* * * * *
3033744 CCACTGTAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGCT
1 CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTTAATCTACT
* * * * *
3033788 CCACTGCAACTTTAGGGAGATGAGACTCGTA-TTTTCAATCTATT
1 CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTT-AATCTACT
* * * **
3033832 CCACTGCAACTTTAGGGAGATGAGATTTGTAACTTCAATCCGCT
1 CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTTAATCTACT
* * * *
3033876 CCACTGCAACTTCAGGGAGATAAGTTTTGTAACTTCAATCTACT
1 CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTTAATCTACT
* * * ** *
3033920 CCACTAG-AGCTTCAGGGAGATAAGATTTAATATTTTTAATCTGCT
1 CCACT-GCAACTTTAGGGAGATAAGATTT-GTAGCTTTAATCTACT
* * * * * *
3033965 CTATTGCAACTTTAGGGGGATAAGGTTTGTAGCTTTAATTTTCT
1 CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTTAATCTACT
* * * * * *
3034009 CTACTGTAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTTAGGGAGATAAGATTTG-TAGCTTTAATCTACT
* * * *
3034054 CCACTGCAACTTTAGGAAGACAAGATTTTTGGCTTTAATCTACT
1 CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTTAATCTACT
*
3034098 CCACTGCAACTTTCATGGAGATAA
1 CCACTGCAACTTT-AGGGAGATAA
3034122 AATTCACCAC
Statistics
Matches: 301, Mismatches: 69, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
43 5 0.02
44 221 0.73
45 75 0.25
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (44 bp):
CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTTAATCTACT
Found at i:3033937 original size:132 final size:133
Alignment explanation
Indices: 3033700--3034121 Score: 377
Period size: 133 Copynumber: 3.2 Consensus size: 133
3033690 TCATTCTAAC
* * * *
3033700 CCACTACAACTTTAGAGG-TATAGGATTTGTTGCTTCAATCTACTCCACTGTAACTTCAGGGAGA
1 CCACTGCAACTTTAG-GGAGATAAGATTTGTAGCTTCAATCTACTCCACTGTAACTTCAGGGAGA
* * * * * * **
3033764 TTAGACTTGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATGAGA-CTCGTATTTTCAATC
65 TAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAATATTTTCAATC
*
3033828 TATT
130 TACT
* * ** *
3033832 CCACTGCAACTTTAGGGAGATGAGATTTGTAACTTCAATCCGCTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGTAACTTCAGGGAGAT
* * * * *
3033897 AAGTTTTGTAACTTCAATCTACTCCACTAG-AGCTTCAGGGAGATAAGATTTAATATTTTTAATC
66 AAGATTTGTAACTTCAATCTGCTCCACT-GCAACTTCAGGGAGATAAGATCTAATATTTTCAATC
*
3033961 TGCT
130 TACT
* * * * * * * * * *
3033965 CTATTGCAACTTTAGGGGGATAAGGTTTGTAGCTTTAATTTTCTCTACTGTAACTTTAGAGAGAT
1 CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGTAACTTCAGGGAGAT
* * * * ** **
3034030 AAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTTAGGAAGACAAGAT-TTTTGGCTTT-AAT
66 AAGATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAT-ATTTTCAAT
3034093 CTACT
129 CTACT
*
3034098 CCACTGCAACTTTCATGGAGATAA
1 CCACTGCAACTTT-AGGGAGATAA
3034122 AATTCACCAC
Statistics
Matches: 229, Mismatches: 54, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
131 2 0.01
132 90 0.39
133 93 0.41
134 44 0.19
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (133 bp):
CCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGTAACTTCAGGGAGAT
AAGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAATATTTTCAATCT
ACT
Found at i:3034089 original size:89 final size:87
Alignment explanation
Indices: 3033731--3034121 Score: 354
Period size: 89 Copynumber: 4.4 Consensus size: 87
3033721 AGGATTTGTT
* * * * * * *
3033731 GCTTCAATCTACTCCACTGTAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGCTCCACTGCA
1 GCTTTAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCA
* * **
3033796 ACTTTAGGGAGATGAGACTCGTA
66 ACTTTAGGGAGATAAG-TTTTTA
* * * * *
3033819 -TTTTCAATCTATTCCACTGCAACTTTAGGGAGATGAGATTTGTAACTTCAATCCGCTCCACTGC
1 GCTTT-AATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGC
*
3033883 AACTTCAGGGAGATAAGTTTTGTA
65 AACTTTAGGGAGATAAGTTTT-TA
* * * * * * * * *
3033907 ACTTCAATCTACTCCACTAG-AGCTTCAGGGAGATAAGATTTAATATTTTTAATCTGCTCTATTG
1 GCTTTAATCTACTCCACT-GCAACTTTAGGGAGATAAGATTT-GTATCTTCAATCTGCTCCACTG
* *
3033971 CAACTTTAGGGGGATAAGGTTTGTA
64 CAACTTTAGGGAGATAA-GTTTTTA
* * * * *
3033996 GCTTTAATTTTCTCTACTGTAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
1 GCTTTAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTG-TATCTTCAATCTGCTCCACTGC
* * *
3034061 AACTTTAGGAAGACAAGATTTTTG
65 AACTTTAGGGAGATAAG-TTTTTA
*
3034085 GCTTTAATCTACTCCACTGCAACTTTCATGGAGATAA
1 GCTTTAATCTACTCCACTGCAACTTT-AGGGAGATAA
3034122 AATTCACCAC
Statistics
Matches: 238, Mismatches: 55, Indels: 18
0.77 0.18 0.06
Matches are distributed among these distances:
87 3 0.01
88 100 0.42
89 123 0.52
90 12 0.05
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (87 bp):
GCTTTAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCA
ACTTTAGGGAGATAAGTTTTTA
Found at i:3048976 original size:16 final size:15
Alignment explanation
Indices: 3048957--3048987 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
3048947 TTTGAGTTTA
3048957 ATTTATTTTTATTTTT
1 ATTTA-TTTTATTTTT
3048973 ATTTATTTTATTTTT
1 ATTTATTTTATTTTT
3048988 CTCTCCTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (15 bp):
ATTTATTTTATTTTT
Found at i:3048977 original size:21 final size:22
Alignment explanation
Indices: 3048939--3048987 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
3048929 ATATAATGGG
3048939 ATTTTTAGTTTGAGTTTAATTT
1 ATTTTTAGTTTGAGTTTAATTT
* * *
3048961 ATTTTTATTTTTA-TTTATTTT
1 ATTTTTAGTTTGAGTTTAATTT
3048982 ATTTTT
1 ATTTTT
3048988 CTCTCCTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.73
Consensus pattern (22 bp):
ATTTTTAGTTTGAGTTTAATTT
Found at i:3052768 original size:23 final size:23
Alignment explanation
Indices: 3052733--3052776 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
3052723 TGGTTATGTA
*
3052733 AATGCAAAATTTTTGGAAAACAT
1 AATGCAAAATTTTTAGAAAACAT
* *
3052756 AATGCAGATTTTTTAGAAAAC
1 AATGCAAAATTTTTAGAAAAC
3052777 TTCCTACCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (23 bp):
AATGCAAAATTTTTAGAAAACAT
Found at i:3054924 original size:13 final size:13
Alignment explanation
Indices: 3054906--3054933 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3054896 TTGTCGAACA
3054906 TCTCACGACCTTT
1 TCTCACGACCTTT
3054919 TCTCACGACCTTT
1 TCTCACGACCTTT
3054932 TC
1 TC
3054934 CTAACAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.39, G:0.07, T:0.39
Consensus pattern (13 bp):
TCTCACGACCTTT
Found at i:3057404 original size:144 final size:145
Alignment explanation
Indices: 3057160--3057448 Score: 499
Period size: 144 Copynumber: 2.0 Consensus size: 145
3057150 CGAATTTTTA
* ** *
3057160 ATGTGACACTTGAGTTGGTGATGAATGTTGTGATTAGTGGAATTGCCTTTTTTTTTTTATAAAGT
1 ATGTGACACTTGAGTTGGTAATGAATGTTGTGATTAGTGGAATTGCCTTTTTTTAATTAGAAAGT
3057225 CTAGTTTAGGTCTACCAAGTGATAGAAGAACCAAATTGAGATATTAAAGTAAGGAAATAAACTCA
66 CTAGTTTAGGTCTACCAAGTGATAGAAGAACCAAATTGAGATATTAAAGTAAGGAAATAAACTCA
3057290 AGAATTGATGCTCCT
131 AGAATTGATGCTCCT
*
3057305 ATGTGGCACTTGAGTTGGTAATGAATGTTGTGATTAGTGGAATTGCC-TTTTTTAATTAGAAAGT
1 ATGTGACACTTGAGTTGGTAATGAATGTTGTGATTAGTGGAATTGCCTTTTTTTAATTAGAAAGT
* *
3057369 CTGGTTTAGGTCTACCAAGTGATAGAAGAACCAAATTGAGATATTAAAGTAAGTAAATAAACTCA
66 CTAGTTTAGGTCTACCAAGTGATAGAAGAACCAAATTGAGATATTAAAGTAAGGAAATAAACTCA
*
3057434 AGATTTGATGCTCCT
131 AGAATTGATGCTCCT
3057449 GCATGGATGA
Statistics
Matches: 136, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
144 91 0.67
145 45 0.33
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (145 bp):
ATGTGACACTTGAGTTGGTAATGAATGTTGTGATTAGTGGAATTGCCTTTTTTTAATTAGAAAGT
CTAGTTTAGGTCTACCAAGTGATAGAAGAACCAAATTGAGATATTAAAGTAAGGAAATAAACTCA
AGAATTGATGCTCCT
Found at i:3061212 original size:52 final size:52
Alignment explanation
Indices: 3061134--3061237 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
3061124 AAGGGTCAAT
3061134 TCTCATGTTTATTTGCTAACTCGATAAGTTGGTTACTGTATGTAGGATCTGG
1 TCTCATGTTTATTTGCTAACTCGATAAGTTGGTTACTGTATGTAGGATCTGG
*
3061186 TCTCATGTTTATTTGCTAACTCGATAAGTTGGTTACTGTATTTAGGATCTGG
1 TCTCATGTTTATTTGCTAACTCGATAAGTTGGTTACTGTATGTAGGATCTGG
3061238 AATTGTTGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.21, C:0.13, G:0.22, T:0.43
Consensus pattern (52 bp):
TCTCATGTTTATTTGCTAACTCGATAAGTTGGTTACTGTATGTAGGATCTGG
Found at i:3063225 original size:3 final size:3
Alignment explanation
Indices: 3063217--3063253 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
3063207 ACCCGTAATG
3063217 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
3063254 AAATAGGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:3064194 original size:33 final size:33
Alignment explanation
Indices: 3064152--3064220 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
3064142 TACTTTTTGG
3064152 TCAATGCAACTCAATGATATAATCATCCATATA
1 TCAATGCAACTCAATGATATAATCATCCATATA
3064185 TCAATGCAACTCAATGATATAATCATCCATATA
1 TCAATGCAACTCAATGATATAATCATCCATATA
3064218 TCA
1 TCA
3064221 TTATTATCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (33 bp):
TCAATGCAACTCAATGATATAATCATCCATATA
Found at i:3074352 original size:24 final size:24
Alignment explanation
Indices: 3074320--3074371 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
3074310 AATCAAAGTC
* *
3074320 AAATATATTATGCTAATAAATTCT
1 AAATATATTATACTAATAAATACT
3074344 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
3074368 AAAT
1 AAAT
3074372 CTTATAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:3074736 original size:14 final size:15
Alignment explanation
Indices: 3074707--3074740 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
3074697 TCTCTCGTAC
3074707 TTTTATTTAAATATT
1 TTTTATTTAAATATT
*
3074722 TTTTATTTATA-ATT
1 TTTTATTTAAATATT
3074736 TTTTA
1 TTTTA
3074741 GACATATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTATTTAAATATT
Found at i:3076743 original size:20 final size:20
Alignment explanation
Indices: 3076718--3076755 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3076708 TGACACGTGA
3076718 CAACATACAT-AAATTTTTTT
1 CAACAT-CATCAAATTTTTTT
3076738 CAACATCATCAAATTTTT
1 CAACATCATCAAATTTTT
3076756 GTCAGAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.42
Consensus pattern (20 bp):
CAACATCATCAAATTTTTTT
Found at i:3079578 original size:28 final size:28
Alignment explanation
Indices: 3079538--3079611 Score: 139
Period size: 28 Copynumber: 2.6 Consensus size: 28
3079528 AATTACGGAA
3079538 ATTGGGCTAAGGCCCACATTGTTATTGT
1 ATTGGGCTAAGGCCCACATTGTTATTGT
3079566 ATTGGGCTAAGGCCCACATTGTTATTGT
1 ATTGGGCTAAGGCCCACATTGTTATTGT
*
3079594 ATTGGGCCAAGGCCCACA
1 ATTGGGCTAAGGCCCACA
3079612 CTGTACTGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.30
Consensus pattern (28 bp):
ATTGGGCTAAGGCCCACATTGTTATTGT
Found at i:3079622 original size:33 final size:33
Alignment explanation
Indices: 3079557--3079653 Score: 89
Period size: 28 Copynumber: 3.1 Consensus size: 33
3079547 AGGCCCACAT
*
3079557 TGTTATTGTATTGGGCTAAGGCCCACA---T--
1 TGTTATTGTATTGGGCCAAGGCCCACACTGTAC
3079585 TGTTATTGTATTGGGCCAAGGCCCACACTGTAC
1 TGTTATTGTATTGGGCCAAGGCCCACACTGTAC
* * * *
3079618 TGTTACTGAATAGGGCTC-AGGCCCAGACTGTCAC
1 TGTTATTGTATTGGGC-CAAGGCCCACACTGT-AC
3079652 TG
1 TG
3079654 CCTGTTGTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
28 26 0.46
31 1 0.02
33 25 0.44
34 5 0.09
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.30
Consensus pattern (33 bp):
TGTTATTGTATTGGGCCAAGGCCCACACTGTAC
Found at i:3082532 original size:2 final size:2
Alignment explanation
Indices: 3082525--3083335 Score: 1622
Period size: 2 Copynumber: 405.5 Consensus size: 2
3082515 CTCACTCACT
3082525 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082567 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082609 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082651 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082693 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082735 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082777 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082819 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082861 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082903 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082945 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3082987 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3083029 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3083071 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3083113 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3083155 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3083197 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3083239 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3083281 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3083323 CA CA CA CA CA CA C
1 CA CA CA CA CA CA C
3083336 TCTCTCTCTC
Statistics
Matches: 809, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 809 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:3083340 original size:2 final size:2
Alignment explanation
Indices: 3083335--3083394 Score: 102
Period size: 2 Copynumber: 30.0 Consensus size: 2
3083325 CACACACACA
3083335 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
3083377 CT CT CT CC CT CC CT CT CT
1 CT CT CT CT CT CT CT CT CT
3083395 AATTTTACTT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:3123104 original size:27 final size:27
Alignment explanation
Indices: 3123073--3123534 Score: 525
Period size: 27 Copynumber: 17.2 Consensus size: 27
3123063 TTACACTGTT
* *
3123073 ATGATCGAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
3123100 ATGATCGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
3123127 ATGACTGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
3123154 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * * *
3123181 CTAACCAAAATACCCCCATAGGATAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * * *
3123208 ATGACTGAAATACCCCTATAAGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
3123235 ATGACCGAAATACCCTCATAAGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
3123262 ATTATCC--AATACCCCCGTAGGGTAAA
1 ATGA-CCGAAATACCCCCATAGGGTAAA
** *
3123288 ATGATTGAAATACCCCCATAGGGTAAC
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
3123315 ATGACCGAGATACCCCTATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
3123342 ATGACCGAAGTACCCCCACAGGGT-AT
1 ATGACCGAAATACCCCCATAGGGTAAA
*
3123368 ATGACCGAAATACCCCCATAAGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
3123395 ATGACTGTAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
3123422 TTGATCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
3123449 ATGACCAAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * * *
3123476 ATGACCAAAATACCCTCGTAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
3123503 ATGATCAAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
3123530 ATGAC
1 ATGAC
3123535 TATTATACCC
Statistics
Matches: 366, Mismatches: 65, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
26 39 0.11
27 325 0.89
28 2 0.01
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.19
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAGGGTAAA
Found at i:3127804 original size:10 final size:10
Alignment explanation
Indices: 3127789--3127820 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
3127779 AAAAATTAAA
3127789 ATATATGTAT
1 ATATATGTAT
3127799 ATATATGTAT
1 ATATATGTAT
*
3127809 ATATATATAT
1 ATATATGTAT
3127819 AT
1 AT
3127821 GTATTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (10 bp):
ATATATGTAT
Found at i:3128130 original size:3 final size:3
Alignment explanation
Indices: 3128122--3128179 Score: 98
Period size: 3 Copynumber: 19.3 Consensus size: 3
3128112 AAAAACAATT
* *
3128122 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3128170 ATA ATA ATA A
1 ATA ATA ATA A
3128180 AATTGCTAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:3129776 original size:46 final size:46
Alignment explanation
Indices: 3129711--3130272 Score: 244
Period size: 44 Copynumber: 12.8 Consensus size: 46
3129701 GAATTACTGG
* *
3129711 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATT
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATT
* * *
3129757 CTTCGGTCTG-TCCCACTGTAATCTCAGGGAAATAAGACCTG--A--
1 CTTCGATCTGCT-CCACTGTAATCTCAGGGAGATAAGATCTGAAATT
* * ** * **
3129799 C-GCGATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCT-TCATT
1 CTTCGATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTGAAATT
* * * * *
3129844 -TT-AATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-T--ACTAG
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT-T
* *
3129886 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATT
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATT
* * * *
3129932 CTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTG--A--
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATT
* * ** ** **
3129974 C-ACGATCTACTCTGCTGTAA-CTTCAGAAAGATAAGATCCT-TCATT
1 CTTCGATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTGAAATT
* * * * *
3130019 -TT-AATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-T--ACTAG
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT-T
* *
3130061 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTG--A--
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATT
* * * * **
3130103 C-ACGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT
1 CTTCGATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTGAAATT
* ** * * *
3130148 -TT-AATCCACTCCGCTGTAATCTCAGGGAGATAGGAT-T--ACTAT
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT-T
* * * **
3130190 CTTCAATCTGTTCCGCAATAATCTCAGGGAGATAAGATCTGAAATT
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATT
* * * *
3130236 CTTCGGTCTGTTCCACTGTAGTCTCAGGGAAATAAGA
1 CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGA
3130273 CATGTATAAT
Statistics
Matches: 383, Mismatches: 90, Indels: 86
0.69 0.16 0.15
Matches are distributed among these distances:
40 3 0.01
41 79 0.21
42 14 0.04
43 9 0.02
44 167 0.44
45 7 0.02
46 100 0.26
47 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (46 bp):
CTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATT
Found at i:3129833 original size:87 final size:87
Alignment explanation
Indices: 3129716--3130011 Score: 300
Period size: 87 Copynumber: 3.4 Consensus size: 87
3129706 ACTGGCTTCA
* *
3129716 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTCCCACTGTAATCT
1 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTGTCCCACTGTAATCT
*
3129781 CAGGGAAATAAGACCTGACGCG
66 CAGGGAAATAAGACCTGACACG
* ** ** *
3129803 ATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCT-TCATT-TT-AATCCG-CTCCACTGTAA
1 ATCTACTCCGCTGTAATC-TCAGAGAGATAAGAT-CTGAAATTCTTCGGTCTGTC-CCACTGTAA
* * * * *
3129863 TCTCAGGGAGATAGGATTACT-AGCTTCA
63 TCTCAGGGAAATAAGA--CCTGA-C-ACG
* * *
3129891 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
1 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTGTCCCACTGTAATCT
3129956 CAGGGAAATAAGACCTGACACG
66 CAGGGAAATAAGACCTGACACG
* *
3129978 ATCTACTCTGCTGTAA-CTTCAGAAAGATAAGATC
1 ATCTACTCCGCTGTAATC-TCAGAGAGATAAGATC
3130012 CTTCATTTTA
Statistics
Matches: 164, Mismatches: 31, Indels: 28
0.74 0.14 0.13
Matches are distributed among these distances:
84 1 0.01
85 26 0.16
86 5 0.03
87 65 0.40
88 37 0.23
89 4 0.02
90 26 0.16
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (87 bp):
ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTGTCCCACTGTAATCT
CAGGGAAATAAGACCTGACACG
Found at i:3129986 original size:175 final size:175
Alignment explanation
Indices: 3129695--3130102 Score: 771
Period size: 175 Copynumber: 2.3 Consensus size: 175
3129685 CAACGTCGGA
* *
3129695 GAGATAGAATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTT
1 GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTT
*
3129760 CGGTCTGTCCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTCAG
66 CGGTCTGTCCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTGCTGTAACTTCAG
*
3129825 AGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGG
131 AAAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGG
3129870 GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTT
1 GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTT
*
3129935 CGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTGCTGTAACTTCAG
66 CGGTCTGTCCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTGCTGTAACTTCAG
3130000 AAAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGG
131 AAAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGG
3130045 GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
1 GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
3130103 CACGATCTAC
Statistics
Matches: 228, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
175 228 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (175 bp):
GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTT
CGGTCTGTCCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTGCTGTAACTTCAG
AAAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGG
Found at i:3130112 original size:129 final size:129
Alignment explanation
Indices: 3129938--3130231 Score: 480
Period size: 129 Copynumber: 2.3 Consensus size: 129
3129928 AATTCTTCGG
* * * *
3129938 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTGCTGTAACTTCAGAAA
1 TCTGTTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAAA
*
3130003 GATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
66 GATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
* *
3130067 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGA
1 TCTGTTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAAA
* * *
3130132 GATAAGATCCTTTATTTTAATCCACTCCGCTGTAATCTCAGGGAGATAGGATTACTATCTTCAA
66 GATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
**
3130196 TCTGTTCCGCAATAATCTCAGGGAGATAAGATCTGA
1 TCTGTTCCGCTGTAATCTCAGGGAGATAAGATCTGA
3130232 AATTCTTCGG
Statistics
Matches: 152, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 152 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (129 bp):
TCTGTTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAAA
GATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
Found at i:3139645 original size:3 final size:3
Alignment explanation
Indices: 3139637--3139694 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
3139627 AAAAACAATT
*
3139637 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3139685 ATA ATA ATA A
1 ATA ATA ATA A
3139695 AATTGCTAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:3149085 original size:24 final size:24
Alignment explanation
Indices: 3149053--3149104 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
3149043 AATCAAAGTC
* *
3149053 AAATATATTATGCTAATAAATTCT
1 AAATATATTATACTAATAAATACT
3149077 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
3149101 AAAT
1 AAAT
3149105 CTTCTGGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:3149466 original size:14 final size:15
Alignment explanation
Indices: 3149437--3149470 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
3149427 TCTCCCGTAC
3149437 TTTTATTTAAATATT
1 TTTTATTTAAATATT
*
3149452 TTTTATTTATA-ATT
1 TTTTATTTAAATATT
3149466 TTTTA
1 TTTTA
3149471 GACATATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTATTTAAATATT
Found at i:3162841 original size:69 final size:69
Alignment explanation
Indices: 3162730--3162867 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
3162720 ATCATTAATT
3162730 TAGATATGTTTCATTCTTATATTTTGGATCTATAACTTTCTAGAACATCAAAAACTTAGTAAGAG
1 TAGATATGTTTCATTCTTATATTTTGGATCTATAACTTTCTAGAACATCAAAAACTTAGTAAGAG
3162795 AGTA
66 AGTA
3162799 TAGATATGTTTCATTCTTATATTTTGGATCTATAACTTTCTAGAACATCAAAAACTTAGTAAGAG
1 TAGATATGTTTCATTCTTATATTTTGGATCTATAACTTTCTAGAACATCAAAAACTTAGTAAGAG
3162864 AGTA
66 AGTA
3162868 CATTTATCGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (69 bp):
TAGATATGTTTCATTCTTATATTTTGGATCTATAACTTTCTAGAACATCAAAAACTTAGTAAGAG
AGTA
Found at i:3165054 original size:6 final size:7
Alignment explanation
Indices: 3165025--3165057 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
3165015 CTTTGGCTAA
3165025 TTAATTT
1 TTAATTT
3165032 TGTAATTT
1 T-TAATTT
3165040 TTAATTT
1 TTAATTT
3165047 TTAATTT
1 TTAATTT
3165054 TTAA
1 TTAA
3165058 GACTTGTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (7 bp):
TTAATTT
Found at i:3167408 original size:16 final size:17
Alignment explanation
Indices: 3167378--3167410 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
3167368 CTACCAAATA
*
3167378 AAAAACACACCTAAAGG
1 AAAAACACACATAAAGG
3167395 AAAAACA-ACATAAAGG
1 AAAAACACACATAAAGG
3167411 CAACTACACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.64, C:0.18, G:0.12, T:0.06
Consensus pattern (17 bp):
AAAAACACACATAAAGG
Found at i:3168910 original size:32 final size:32
Alignment explanation
Indices: 3168874--3168940 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
3168864 CACATAGAGG
*
3168874 AAGGATCAAAGAGAGATAAGTTTTGCTTGAAT
1 AAGGATCAAAGAGAGATAAGTTCTGCTTGAAT
*
3168906 AAGGATCAAGGAGAGATAAGTTCTGCTTGAAT
1 AAGGATCAAAGAGAGATAAGTTCTGCTTGAAT
3168938 AAG
1 AAG
3168941 AGGCTATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.25
Consensus pattern (32 bp):
AAGGATCAAAGAGAGATAAGTTCTGCTTGAAT
Found at i:3175047 original size:30 final size:30
Alignment explanation
Indices: 3175011--3175099 Score: 160
Period size: 30 Copynumber: 3.0 Consensus size: 30
3175001 AATCAAGCAT
3175011 TGAAAATCCCAATCTGTAATTTTGCTTCAC
1 TGAAAATCCCAATCTGTAATTTTGCTTCAC
*
3175041 TGAAAATCCCAATCTGTAATTTTGCTTCAT
1 TGAAAATCCCAATCTGTAATTTTGCTTCAC
*
3175071 TGAAAATCCCAATCTCTAATTTTGCTTCA
1 TGAAAATCCCAATCTGTAATTTTGCTTCA
3175100 AACTATCTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.38
Consensus pattern (30 bp):
TGAAAATCCCAATCTGTAATTTTGCTTCAC
Found at i:3175335 original size:12 final size:12
Alignment explanation
Indices: 3175314--3175345 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
3175304 TTCATCGTCA
*
3175314 TCGTCGTCATCG
1 TCGTCATCATCG
3175326 TCGTCATCATCG
1 TCGTCATCATCG
3175338 TCGTCATC
1 TCGTCATC
3175346 GTTCTTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TCGTCATCATCG
Found at i:3175347 original size:9 final size:9
Alignment explanation
Indices: 3175308--3175339 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
3175298 AACATATTCA
3175308 TCGTCATCG
1 TCGTCATCG
3175317 TCGTCATCG
1 TCGTCATCG
*
3175326 TCGTCATCA
1 TCGTCATCG
3175335 TCGTC
1 TCGTC
3175340 GTCATCGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (9 bp):
TCGTCATCG
Found at i:3179513 original size:35 final size:36
Alignment explanation
Indices: 3179466--3179540 Score: 107
Period size: 36 Copynumber: 2.1 Consensus size: 36
3179456 TAGATTTCTC
3179466 TTTTTTCATTCTTCTTTCT-TTTTCTTGATTTTGAT
1 TTTTTTCATTCTTCTTTCTGTTTTCTTGATTTTGAT
* * * *
3179501 TTTTTTCTTTCTTCTTTTTGTTTTTTTTATTTTGAT
1 TTTTTTCATTCTTCTTTCTGTTTTCTTGATTTTGAT
3179537 TTTT
1 TTTT
3179541 GATTTTTTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
35 17 0.49
36 18 0.51
ACGTcount: A:0.07, C:0.11, G:0.05, T:0.77
Consensus pattern (36 bp):
TTTTTTCATTCTTCTTTCTGTTTTCTTGATTTTGAT
Found at i:3179533 original size:28 final size:29
Alignment explanation
Indices: 3179466--3179533 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 29
3179456 TAGATTTCTC
* *
3179466 TTTTTTCATTCTTCTTTCTTTTTCTTGAT
1 TTTTTTTATTTTTCTTTCTTTTTCTTGAT
**
3179495 TTTGATT-TTTTTCTTTCTTCTTT-TTG-T
1 TTTTTTTATTTTTCTTTCTT-TTTCTTGAT
3179522 TTTTTTTATTTT
1 TTTTTTTATTTT
3179534 GATTTTTGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
27 6 0.19
28 18 0.58
29 7 0.23
ACGTcount: A:0.06, C:0.12, G:0.04, T:0.78
Consensus pattern (29 bp):
TTTTTTTATTTTTCTTTCTTTTTCTTGAT
Found at i:3179539 original size:21 final size:21
Alignment explanation
Indices: 3179494--3179559 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
3179484 TTTTTCTTGA
*
3179494 TTTTGATTTTTTTCTTTCTTC-T
1 TTTTGA-TTTTTTCATT-TTCAT
* * *
3179516 TTTTGTTTTTTTTATTTTGAT
1 TTTTGATTTTTTCATTTTCAT
3179537 TTTTGATTTTTTCATTTTCAT
1 TTTTGATTTTTTCATTTTCAT
3179558 TT
1 TT
3179560 CATTTTGACT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
20 2 0.06
21 29 0.81
22 5 0.14
ACGTcount: A:0.09, C:0.08, G:0.06, T:0.77
Consensus pattern (21 bp):
TTTTGATTTTTTCATTTTCAT
Found at i:3186950 original size:124 final size:125
Alignment explanation
Indices: 3186584--3186952 Score: 347
Period size: 124 Copynumber: 2.9 Consensus size: 125
3186574 CTTTGAACTT
** * * *
3186584 AAAAAAACTCAAACTCGAAAAC-CTCCAAAATCACAAAACAACTAAAACCTAAAATTACATCATC
1 AAAAAAACTCAAACTCGAAAACAC-CC-AAA-CTTAAAACAACTAAATCCCAAAATTACATGATC
* * * * * * * *
3186648 TAAACTTGAATCAAGTTGTTATCTTTATAACTACACACAACACTCAGACTCAAACTTTGAACTAC
63 TAAACCTGAATCAAATTGCTATCTTTATACCT--ACACAACACTCACACTCAAACTCTCAACCAC
* * * * *
3186713 AAAAAAACTCAAACTCGAAAATACTCAAACTTAAAACAATTAAAAT-CCAAGATTAAATGATCTA
1 AAAAAAACTCAAACTCGAAAACACCCAAACTTAAAACAACT-AAATCCCAAAATTACATGATCTA
* * * * *
3186777 AACCCGAATCAAATT-CTACCTTTATACTTACCCAACACT-AGCACTCAAACTCTCAACCAT
65 AACCTGAATCAAATTGCTATCTTTATACCTACACAACACTCA-CACTCAAACTCTCAACCAC
* * * * **
3186837 AAAAACATTCAAAC-CAGAAAACACCCAAATTTAAAATAACTAAATCCCAAAATTACATGAAATA
1 AAAAAAACTCAAACTC-GAAAACACCCAAACTTAAAACAACTAAATCCCAAAATTACATGATCTA
3186901 AACCTGAATCAAATTGCTATC-TTATACCTACACAACACTCACA-TCCAAACTC
65 AACCTGAATCAAATTGCTATCTTTATACCTACACAACACTCACACT-CAAACTC
3186953 GAATAACTTA
Statistics
Matches: 194, Mismatches: 38, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
123 7 0.04
124 108 0.56
125 5 0.03
126 10 0.05
127 35 0.18
128 6 0.03
129 22 0.11
130 1 0.01
ACGTcount: A:0.48, C:0.25, G:0.04, T:0.23
Consensus pattern (125 bp):
AAAAAAACTCAAACTCGAAAACACCCAAACTTAAAACAACTAAATCCCAAAATTACATGATCTAA
ACCTGAATCAAATTGCTATCTTTATACCTACACAACACTCACACTCAAACTCTCAACCAC
Found at i:3190298 original size:62 final size:62
Alignment explanation
Indices: 3190224--3190349 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
3190214 GACCACCCTT
3190224 TCATCATTGCAACAGCAAGCACTGCTCTTATCGTGACTGCCTGTACCACTGGACTAAATGTA
1 TCATCATTGCAACAGCAAGCACTGCTCTTATCGTGACTGCCTGTACCACTGGACTAAATGTA
3190286 TCATCATTGCAACAGCAAGCACTGCTCTTATCGTGACTGCCTGTACCACTGGACTAAATGTA
1 TCATCATTGCAACAGCAAGCACTGCTCTTATCGTGACTGCCTGTACCACTGGACTAAATGTA
3190348 TC
1 TC
3190350 TCAAAAATCA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (62 bp):
TCATCATTGCAACAGCAAGCACTGCTCTTATCGTGACTGCCTGTACCACTGGACTAAATGTA
Found at i:3200285 original size:19 final size:17
Alignment explanation
Indices: 3200258--3200302 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
3200248 AAATATTTAG
3200258 ATAAATAAAGAAAAAGAA
1 ATAAATAAA-AAAAAGAA
*
3200276 ATATAAT-AAAAAAAGTA
1 ATA-AATAAAAAAAAGAA
3200293 ATAAATAAAA
1 ATAAATAAAA
3200303 GGAAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 3 0.12
17 13 0.54
18 5 0.21
19 3 0.12
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.18
Consensus pattern (17 bp):
ATAAATAAAAAAAAGAA
Found at i:3200926 original size:113 final size:107
Alignment explanation
Indices: 3200765--3200995 Score: 347
Period size: 113 Copynumber: 2.1 Consensus size: 107
3200755 TTAAAATTGC
* *
3200765 TTCATTTTTGCACTTAACCGAAAAAAAAAATTCTCTCCAAAACTGTCTTCCCTTTTCCAGATCAA
1 TTCA-TTTTGCACTTAACCAAAAAAAAAAATTCTCTCCAAAACCGTCTTCCCTTTTCCAGATCAA
* *
3200830 AGAGAAAGTGGTAAATTTCTTCTTTTTTTTTGACATTGTTTTTTTGG
65 AGAGAAAGGGGT-AATTT-TT-TTTTTTTTT-ACATTGTTTTTATGG
*
3200877 TTCATTTCTGCACTTATCCAAAAAAAAAAATTTCTCTCCAAAACCGTCTTCCCTTTTCCAGATCA
1 TTCATTT-TGCACTTAACCAAAAAAAAAAA-TTCTCTCCAAAACCGTCTTCCCTTTTCCAGATCA
3200942 AAGAGAAAGGGGTAATTTTTTTTTTTTTTACATTGTTTTTATGG
64 AAGAGAAAGGGGTAATTTTTTTTTTTTTTACATTGTTTTTATGG
3200986 TT-ATTTTGCA
1 TTCATTTTGCA
3200996 AGGAATCATG
Statistics
Matches: 112, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
107 4 0.04
108 4 0.04
109 16 0.14
110 9 0.08
111 5 0.04
112 29 0.26
113 45 0.40
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (107 bp):
TTCATTTTGCACTTAACCAAAAAAAAAAATTCTCTCCAAAACCGTCTTCCCTTTTCCAGATCAAA
GAGAAAGGGGTAATTTTTTTTTTTTTTACATTGTTTTTATGG
Found at i:3201364 original size:116 final size:116
Alignment explanation
Indices: 3201213--3201424 Score: 277
Period size: 116 Copynumber: 1.8 Consensus size: 116
3201203 GGGTAATTAA
* * * *
3201213 ATTCTTACAGATAAGCAAAATTTTACAACTCCTACTACT-TTTGAATTTTTTGGAC-GTTAGAAT
1 ATTCTTACAAATAAGCAAAATTTTACAAATCCTACTACTGCTT-AATTCTTTGGACAG-TAGAAT
*
3201276 ATTGCTA-TTTTTTTAATTTAATTTAATTAATTACTATATATATTTCTATAAAT
64 ATTACTACTTTTTTTAATTTAA-TTAATTAATTACTATATATATTTCTATAAAT
* * * *
3201329 ATTCTTGCAAATAAGGAAAATTTTACAAATGCTACTACTGCTTAATTCTTTGTACAGTAGAATAT
1 ATTCTTACAAATAAGCAAAATTTTACAAATCCTACTACTGCTTAATTCTTTGGACAGTAGAATAT
*
3201394 TACTATCTTTTTTTATTTTAATTAATTAATT
66 TACTA-CTTTTTTTAATTTAATTAATTAATT
3201425 TAATTTTTCT
Statistics
Matches: 82, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
116 56 0.68
117 13 0.16
118 13 0.16
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (116 bp):
ATTCTTACAAATAAGCAAAATTTTACAAATCCTACTACTGCTTAATTCTTTGGACAGTAGAATAT
TACTACTTTTTTTAATTTAATTAATTAATTACTATATATATTTCTATAAAT
Found at i:3203078 original size:51 final size:52
Alignment explanation
Indices: 3203020--3203135 Score: 128
Period size: 51 Copynumber: 2.2 Consensus size: 52
3203010 ATTGGTATAA
* * * * *
3203020 TAACAAATTTAGTCCTCAAA-ATTTTACACATTGTGTCAAATTGGTATTG-TT
1 TAACAAATTTAGCCCACAAACA-TTTACACATTCTATCAAATTGATATTGATT
* * * *
3203071 TAACAAATTTAACCCACAAACATTTACATATTCTATCAATTTGATCTTGATT
1 TAACAAATTTAGCCCACAAACATTTACACATTCTATCAAATTGATATTGATT
3203123 TAACAAATTTAGC
1 TAACAAATTTAGC
3203136 TCGTAACATT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
51 38 0.72
52 15 0.28
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (52 bp):
TAACAAATTTAGCCCACAAACATTTACACATTCTATCAAATTGATATTGATT
Found at i:3206135 original size:52 final size:50
Alignment explanation
Indices: 3206023--3206158 Score: 139
Period size: 51 Copynumber: 2.7 Consensus size: 50
3206013 ATTGGTATAA
* * * *
3206023 TAACAAATTTAGTCCTCAAA-ATTTTACACATTGTATCAAATTGGTATTGTT
1 TAACAAATTTAG-CCCCAAACA-TTTACATATTCTATCAAATTGATATTGTT
* * *
3206074 TAACAAATTTAACCCACAAACATTTACATATTCTATCAATTTGATCTTGATT
1 TAACAAATTTAGCCC-CAAACATTTACATATTCTATCAAATTGATATTG-TT
* **
3206126 TAACAAATTTAGCTCGTAACATTTACATATTCT
1 TAACAAATTTAGCCCCAAACATTTACATATTCT
3206159 CTCTAACAAC
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
50 2 0.03
51 53 0.75
52 16 0.23
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.40
Consensus pattern (50 bp):
TAACAAATTTAGCCCCAAACATTTACATATTCTATCAAATTGATATTGTT
Found at i:3207245 original size:124 final size:125
Alignment explanation
Indices: 3207025--3207396 Score: 351
Period size: 124 Copynumber: 3.0 Consensus size: 125
3207015 AGTTTGGATG
* * *
3207025 TGAGTGTTGTGTAGGTATAAAGATAGCAATTTGATTCGGGTTTATATCATGTAATTTTGGGATTT
1 TGAGTGTTGGGTAGGTATAAAGATAGCAATTTGATTCGGGTTTAGATCATGTAATCTTGGGATTT
* * * *** * *
3207090 AGTTGTTTTAAATTTGGGTGTTTTTTTGTTTGAATGTTTTTATAGTTGAGAGTTTGAGTGC
66 AATTGTTTTAAATTTGAGTATTTTCGAGTTTGAATGTTTTTATAGTTCAAAGTTTGAGT-C
* * *
3207151 T-AGTGTTGGGTAAGTATAAAGGTAG-AATTTGATTCGGGTTTAGATCATTTAATCTT-GGATTT
1 TGAGTGTTGGGTAGGTATAAAGATAGCAATTTGATTCGGGTTTAGATCATGTAATCTTGGGA-TT
* * * *
3207213 TAATTGTTTTAAGTTTGAGTATTTTCGAGTTTGAGTTTTTTTGTAGTTCAAAGTTTGAGTC
65 TAATTGTTTTAAATTTGAGTATTTTCGAGTTTGAATGTTTTTATAGTTCAAAGTTTGAGTC
* * * ** * * *
3207274 TGAGTGTTGTGTGTAGGTATAAAAATAACAACTT-ATTCAAGTTTAGATCATGTAATTTTAGGTT
1 TGAGTGTTG-G-GTAGGTATAAAGATAGCAATTTGATTCGGGTTTAGATCATGTAATCTTGGGAT
* * * * * *
3207338 TTAGTTGTTTTGTGATTTTGGAG-GTTTTCGAGTTTGAGTTTTTTTA-AGTTCAAAGTTTG
64 TTAATTG-TTT-TAAATTT-GAGTATTTTCGAGTTTGAATGTTTTTATAGTTCAAAGTTTG
3207397 GGTGTAACTG
Statistics
Matches: 204, Mismatches: 33, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
123 5 0.02
124 85 0.42
125 22 0.11
126 41 0.20
127 22 0.11
128 26 0.13
129 3 0.01
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (125 bp):
TGAGTGTTGGGTAGGTATAAAGATAGCAATTTGATTCGGGTTTAGATCATGTAATCTTGGGATTT
AATTGTTTTAAATTTGAGTATTTTCGAGTTTGAATGTTTTTATAGTTCAAAGTTTGAGTC
Found at i:3210550 original size:124 final size:125
Alignment explanation
Indices: 3210238--3210595 Score: 404
Period size: 124 Copynumber: 2.8 Consensus size: 125
3210228 CTTTGTACTT
** * *
3210238 AAAAAAACTCAAACTCGAAAAC-CTCCAAAATCCCAAAACAACTAAAACCTAAAATTACATGATC
1 AAAAAAACTCAAACTCGAAAACAC-CC-AAA-CTTAAAACAACTAAATCCCAAAATTACATGATC
** * * *
3210302 TAAACTTGAATTAAATT-TATCTTTATACCTACATACAACACTCAGACTCAAACTTTGAACTACA
63 TAAACCCGAATCAAATTCTATCTTTATACCTAC--ACAACACTCAGACTCAAACTCTCAACTACA
* * * * *
3210366 AAAAAAACTCAAACTCGAAAATACTCAAACTTAAAACAATTAAAAT-CCAAGATTAAATGATCTA
1 AAAAAAACTCAAACTCGAAAACACCCAAACTTAAAACAACT-AAATCCCAAAATTACATGATCTA
* * *
3210430 AACCCGAATCAAATTCTACCTTTATACCTACCCAACACT-AGCACTCAAACTCTCAACTA-T
65 AACCCGAATCAAATTCTATCTTTATACCTACACAACACTCAG-ACTCAAACTCTCAACTACA
* * * *
3210490 AAAAACATTCAAAC-CAGAAAACACCCAAATTTAAAACAACTAAATCCCAAAATTACATGATATA
1 AAAAAAACTCAAACTC-GAAAACACCCAAACTTAAAACAACTAAATCCCAAAATTACATGATCTA
3210554 AACCCGAATCAAATTGCTATCTTTATACCTACACAACACTCA
65 AACCCGAATCAAATT-CTATCTTTATACCTACACAACACTCA
3210596 CATCCAGACT
Statistics
Matches: 194, Mismatches: 28, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
123 5 0.03
124 65 0.34
125 44 0.23
126 37 0.19
127 20 0.10
128 22 0.11
129 1 0.01
ACGTcount: A:0.48, C:0.25, G:0.04, T:0.23
Consensus pattern (125 bp):
AAAAAAACTCAAACTCGAAAACACCCAAACTTAAAACAACTAAATCCCAAAATTACATGATCTAA
ACCCGAATCAAATTCTATCTTTATACCTACACAACACTCAGACTCAAACTCTCAACTACA
Found at i:3212015 original size:19 final size:18
Alignment explanation
Indices: 3211988--3212028 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
3211978 TGTAATATTG
*
3211988 AATTTAATTAAATGCAATT
1 AATTAAATTAAATGCAA-T
*
3212007 AATTAAATTAATTGCAAT
1 AATTAAATTAAATGCAAT
3212025 AATT
1 AATT
3212029 TTTCTTTACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (18 bp):
AATTAAATTAAATGCAAT
Found at i:3216566 original size:23 final size:23
Alignment explanation
Indices: 3216523--3216566 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
3216513 ATGTTTAAGT
**
3216523 TTAATATATTTTTAAGTTTATTA
1 TTAATATATTTTTAAAATTATTA
3216546 TTAATACTA-TTTTAAAATTAT
1 TTAATA-TATTTTTAAAATTAT
3216567 AATATAATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TTAATATATTTTTAAAATTATTA
Found at i:3219593 original size:35 final size:35
Alignment explanation
Indices: 3219552--3219626 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 35
3219542 TTACTCTTAT
* *
3219552 TAAAATTTAGGGAAAA-ATTATAAAAATAATAAAT-AA
1 TAAATTTTAGAGAAAATATT-T-AAAATAA-AAATCAA
3219588 TAAATTTTAGAGAAAATATTTAAAATAAAAATCAA
1 TAAATTTTAGAGAAAATATTTAAAATAAAAATCAA
3219623 TAAA
1 TAAA
3219627 AGTAATAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
34 4 0.11
35 13 0.37
36 15 0.43
37 3 0.09
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (35 bp):
TAAATTTTAGAGAAAATATTTAAAATAAAAATCAA
Found at i:3219612 original size:36 final size:35
Alignment explanation
Indices: 3219552--3219648 Score: 108
Period size: 35 Copynumber: 2.7 Consensus size: 35
3219542 TTACTCTTAT
*
3219552 TAAAATTTAGGGAAAAATTATAAAAATAATAAAT-AA
1 TAAAATTTAGAGAAAAATTAT-AAAATAA-AAATCAA
*
3219588 TAAATTTTAGAGAAAATATT-TAAAATAAAAATCAA
1 TAAAATTTAGAGAAAA-ATTATAAAATAAAAATCAA
* * *
3219623 TAAAAGTAATAGAAAAATTATAAAAT
1 TAAAATTTAGAGAAAAATTATAAAAT
3219649 GCTTCTTTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
34 7 0.13
35 27 0.52
36 15 0.29
37 3 0.06
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (35 bp):
TAAAATTTAGAGAAAAATTATAAAATAAAAATCAA
Found at i:3219757 original size:7 final size:8
Alignment explanation
Indices: 3219739--3219793 Score: 56
Period size: 8 Copynumber: 6.5 Consensus size: 8
3219729 CTTTACAAAA
3219739 TTTTATAT
1 TTTTATAT
*
3219747 TTTTTTAT
1 TTTTATAT
3219755 TTTCTATAT
1 TTT-TATAT
3219764 ATTTTATAAT
1 -TTTTAT-AT
*
3219774 TTTTACAT
1 TTTTATAT
*
3219782 TTTTTTAT
1 TTTTATAT
3219790 TTTT
1 TTTT
3219794 TTTCTAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 22 0.56
9 12 0.31
10 5 0.13
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTATAT
Found at i:3222770 original size:91 final size:90
Alignment explanation
Indices: 3222605--3222773 Score: 205
Period size: 91 Copynumber: 1.9 Consensus size: 90
3222595 ATATAGGTAT
* * * * *
3222605 GTATCCAACATGGGTACCGTTAGATTTTTCAAAGTTGTTCCATATATTTGGAAGATCATTGAAGT
1 GTATCAAACACGGGCACCGTTAGATTTTTCAAAGTTGTTCCACATATTTGGAAGATCATTGAAGA
3222670 TCATATCCCCATAATCAGGATGTAA
66 TCATATCCCCATAATCAGGATGTAA
* * * * * *
3222695 GTATCAAACACGGGCACGGTTAGATTTTTTACAAGTTTTTCCACCA-ATTTGGAAGGTCTTTTAA
1 GTATCAAACACGGGCACCGTTAGATTTTTCA-AAGTTGTTCCA-CATATTTGGAAGATCATTGAA
*
3222759 GATCATGTCCCCATA
64 GATCATATCCCCATA
3222774 TCCATGTGTC
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
90 26 0.40
91 38 0.58
92 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (90 bp):
GTATCAAACACGGGCACCGTTAGATTTTTCAAAGTTGTTCCACATATTTGGAAGATCATTGAAGA
TCATATCCCCATAATCAGGATGTAA
Found at i:3228196 original size:11 final size:11
Alignment explanation
Indices: 3228168--3228199 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
3228158 TATTCGAACA
*
3228168 ATAATAACAAT
1 ATAATAGCAAT
3228179 ATAATAGCAAT
1 ATAATAGCAAT
3228190 ATAATAGCAA
1 ATAATAGCAA
3228200 AATTGTAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.25
Consensus pattern (11 bp):
ATAATAGCAAT
Found at i:3228445 original size:17 final size:16
Alignment explanation
Indices: 3228418--3228449 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
3228408 GTCTTTCATG
3228418 CTTTAGTTTCTCTTTA
1 CTTTAGTTTCTCTTTA
3228434 CTTTATGTTTCTCTTT
1 CTTTA-GTTTCTCTTT
3228450 CAAGTGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.09, C:0.19, G:0.06, T:0.66
Consensus pattern (16 bp):
CTTTAGTTTCTCTTTA
Found at i:3235336 original size:39 final size:41
Alignment explanation
Indices: 3235272--3235362 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 41
3235262 TAAAAAGTTT
*
3235272 TTATATTAAAAAAACACTACCATAAATATAATAAATATTTTA
1 TTATATT-AAAAAACACTACAATAAATATAATAAATATTTTA
3235314 TTATATTAAAAAACAC-A-AATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
*
3235353 TTGTATTAAA
1 TTATATTAAA
3235363 TATAAATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 30 0.64
40 1 0.02
41 9 0.19
42 7 0.15
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.37
Consensus pattern (41 bp):
TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
Found at i:3237060 original size:20 final size:20
Alignment explanation
Indices: 3237037--3237079 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
3237027 GAAAATTGGG
*
3237037 TAATTTATGGAGAAAAATGA
1 TAATTTATGGAGAAAAAAGA
*
3237057 TAATTTATGGATAAAAAAGA
1 TAATTTATGGAGAAAAAAGA
3237077 TAA
1 TAA
3237080 GACCTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.30
Consensus pattern (20 bp):
TAATTTATGGAGAAAAAAGA
Found at i:3239652 original size:4 final size:4
Alignment explanation
Indices: 3239643--3239712 Score: 131
Period size: 4 Copynumber: 17.5 Consensus size: 4
3239633 CTACCACAGC
*
3239643 TACA TACA TACA TACA TACA TACA TACA TAAA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
3239691 TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TA
3239713 TAAAGATTGT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 64 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:3239835 original size:12 final size:12
Alignment explanation
Indices: 3239818--3239860 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
3239808 CGGCCAGGTA
3239818 TGTATGTATATG
1 TGTATGTATATG
* *
3239830 TGTATGTAAATA
1 TGTATGTATATG
*
3239842 TGTATATATATG
1 TGTATGTATATG
*
3239854 TATATGT
1 TGTATGT
3239861 TTTTAGTATA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.49
Consensus pattern (12 bp):
TGTATGTATATG
Found at i:3250975 original size:23 final size:23
Alignment explanation
Indices: 3250948--3251004 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
3250938 TGACCATTGA
3250948 CGTCCCGATGAGAAGAGATGCCT
1 CGTCCCGATGAGAAGAGATGCCT
*
3250971 CGTCCTGATGAGAAGAGATGCCT
1 CGTCCCGATGAGAAGAGATGCCT
*
3250994 CGTCCGGATGA
1 CGTCCCGATGA
3251005 CCCAATGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.32, T:0.19
Consensus pattern (23 bp):
CGTCCCGATGAGAAGAGATGCCT
Found at i:3252698 original size:18 final size:18
Alignment explanation
Indices: 3252675--3252712 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
3252665 TATACTCTTT
3252675 ACGAAAACAATTTATCCA
1 ACGAAAACAATTTATCCA
3252693 ACGAAAACAATTTATCCA
1 ACGAAAACAATTTATCCA
3252711 AC
1 AC
3252713 TGTTTTGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.24, G:0.05, T:0.21
Consensus pattern (18 bp):
ACGAAAACAATTTATCCA
Found at i:3271583 original size:23 final size:26
Alignment explanation
Indices: 3271539--3271590 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 26
3271529 ACATGCAATC
3271539 AAAGTAAAATATAAAATTTTCCAAGAA
1 AAAGTAAAATATAAAA-TTTCCAAGAA
*
3271566 AAAGTAAAA-A-AAAA-TTCCCAGAA
1 AAAGTAAAATATAAAATTTCCAAGAA
3271589 AA
1 AA
3271591 CTGGTTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 10 0.42
25 4 0.17
26 1 0.04
27 9 0.38
ACGTcount: A:0.63, C:0.10, G:0.08, T:0.19
Consensus pattern (26 bp):
AAAGTAAAATATAAAATTTCCAAGAA
Found at i:3274409 original size:49 final size:49
Alignment explanation
Indices: 3274337--3274430 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
3274327 CTCGATGTTT
* *
3274337 TCCTGGTTGATCCGCCTAAGCCTGCTC-TAGCTATATTTTGAATCAAGTC
1 TCCTGGTTGATCCACCTAAGCCTGCTCTTA-CTACATTTTGAATCAAGTC
*
3274386 TCCTGGTTGATCCACCTGAGCCTGCTCTTACTACATTTTGAATCA
1 TCCTGGTTGATCCACCTAAGCCTGCTCTTACTACATTTTGAATCA
3274431 GACTTGATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 39 0.95
50 2 0.05
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (49 bp):
TCCTGGTTGATCCACCTAAGCCTGCTCTTACTACATTTTGAATCAAGTC
Found at i:3277002 original size:25 final size:24
Alignment explanation
Indices: 3276974--3277044 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 24
3276964 TATTTAATTC
*
3276974 AATTTTTTTAAATATTTGCTTTATT
1 AATTTTTTTAAATATTTG-TTTAAT
3276999 AATTTTTTTAATATAAATATTGTTTAAT
1 AATTTTTTTAA-AT--AT-TTGTTTAAT
*
3277027 AATTTTTTATAATTATTT
1 AATTTTTT-TAAATATTT
3277045 AAGATAACTA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
25 13 0.33
26 4 0.10
28 16 0.41
29 6 0.15
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (24 bp):
AATTTTTTTAAATATTTGTTTAAT
Found at i:3277029 original size:28 final size:31
Alignment explanation
Indices: 3276982--3277039 Score: 86
Period size: 28 Copynumber: 2.0 Consensus size: 31
3276972 TCAATTTTTT
*
3276982 TAAATATTTGCTTTATTAATTTTTT-TAATA
1 TAAATATTTGCTTTAATAATTTTTTATAATA
3277012 TAAATA-TTG-TTTAATAATTTTTTATAAT
1 TAAATATTTGCTTTAATAATTTTTTATAAT
3277040 TATTTAAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 13 0.50
29 7 0.27
30 6 0.23
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (31 bp):
TAAATATTTGCTTTAATAATTTTTTATAATA
Found at i:3284720 original size:15 final size:15
Alignment explanation
Indices: 3284700--3284728 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
3284690 TGCTTTCATT
3284700 CTTTATTTAATTCAC
1 CTTTATTTAATTCAC
3284715 CTTTATTTAATTCA
1 CTTTATTTAATTCA
3284729 ATTTTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (15 bp):
CTTTATTTAATTCAC
Found at i:3284786 original size:28 final size:31
Alignment explanation
Indices: 3284735--3284792 Score: 86
Period size: 28 Copynumber: 2.0 Consensus size: 31
3284725 TTCAATTTTT
*
3284735 TAAATATTCGCTTTATTAATTTTTT-TAATA
1 TAAATATTCGCTTTAATAATTTTTTATAATA
3284765 TAAATATT-G-TTTAATAATTTTTTATAAT
1 TAAATATTCGCTTTAATAATTTTTTATAAT
3284793 TATTTAAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 13 0.50
29 5 0.19
30 8 0.31
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.57
Consensus pattern (31 bp):
TAAATATTCGCTTTAATAATTTTTTATAATA
Found at i:3285432 original size:4 final size:4
Alignment explanation
Indices: 3285423--3285471 Score: 98
Period size: 4 Copynumber: 12.2 Consensus size: 4
3285413 CATCATCCAA
3285423 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3285471 G
1 G
3285472 CGTGCAAGCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:3286065 original size:32 final size:33
Alignment explanation
Indices: 3286024--3286085 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
3286014 AGGTCCCAAA
* *
3286024 TTTTTGAAAATTCTCATTATAC-CTTTTAATTT
1 TTTTTGAAAATTCTAATTAAACTCTTTTAATTT
*
3286056 TTTTTGAAAATTTTAATTAAACTCTTTTAA
1 TTTTTGAAAATTCTAATTAAACTCTTTTAA
3286086 GAAGCCCCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.32, C:0.10, G:0.03, T:0.55
Consensus pattern (33 bp):
TTTTTGAAAATTCTAATTAAACTCTTTTAATTT
Found at i:3287230 original size:49 final size:49
Alignment explanation
Indices: 3287173--3287267 Score: 172
Period size: 49 Copynumber: 1.9 Consensus size: 49
3287163 CTCGATGTTT
3287173 TCCTGGTTGATCCACCTAAGCCTGCTCTCGCTACATTTTGAATCAGGCC
1 TCCTGGTTGATCCACCTAAGCCTGCTCTCGCTACATTTTGAATCAGGCC
* *
3287222 TCCTGGTTGATCCACCTGAGCCTGCTCTTGCTACATTTTGAATCAG
1 TCCTGGTTGATCCACCTAAGCCTGCTCTCGCTACATTTTGAATCAG
3287268 ACTTGATTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.33
Consensus pattern (49 bp):
TCCTGGTTGATCCACCTAAGCCTGCTCTCGCTACATTTTGAATCAGGCC
Found at i:3294341 original size:15 final size:15
Alignment explanation
Indices: 3294321--3294351 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3294311 GTTATGTAAG
3294321 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
*
3294336 TGAAAGGTTAAGAGT
1 TGAAAGGTCAAGAGT
3294351 T
1 T
3294352 ATGTTGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:3297733 original size:57 final size:57
Alignment explanation
Indices: 3297645--3297756 Score: 197
Period size: 57 Copynumber: 2.0 Consensus size: 57
3297635 ACGAGTCGAT
* * *
3297645 GCAAGCAAATACTGAAGTTTGGTGGGAAGCCTTCGCTATCTCACTTGCACAAGGCAC
1 GCAAGCAAATACCGAAGTTTGGTGGGAAGCCTTCACTATCTCACTTACACAAGGCAC
3297702 GCAAGCAAATACCGAAGTTTGGTGGGAAGCCTTCACTATCTCACTTACACAAGGC
1 GCAAGCAAATACCGAAGTTTGGTGGGAAGCCTTCACTATCTCACTTACACAAGGC
3297757 CTGACATTTC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.22
Consensus pattern (57 bp):
GCAAGCAAATACCGAAGTTTGGTGGGAAGCCTTCACTATCTCACTTACACAAGGCAC
Found at i:3298580 original size:15 final size:15
Alignment explanation
Indices: 3298560--3298590 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3298550 GTTATGTAAG
3298560 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
*
3298575 TGAAAGGTTAAGAGT
1 TGAAAGGTCAAGAGT
3298590 T
1 T
3298591 ATGTTGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:3302449 original size:42 final size:43
Alignment explanation
Indices: 3302388--3302473 Score: 165
Period size: 42 Copynumber: 2.0 Consensus size: 43
3302378 AGATTTTACT
3302388 ATACTTATTGGCTAAACTATAAATTCTGAAAATTTTATGGTAG
1 ATACTTATTGGCTAAACTATAAATTCTGAAAATTTTATGGTAG
3302431 ATACTTATT-GCTAAACTATAAATTCTGAAAATTTTATGGTAG
1 ATACTTATTGGCTAAACTATAAATTCTGAAAATTTTATGGTAG
3302473 A
1 A
3302474 AAGATATTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 34 0.79
43 9 0.21
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (43 bp):
ATACTTATTGGCTAAACTATAAATTCTGAAAATTTTATGGTAG
Found at i:3308181 original size:16 final size:16
Alignment explanation
Indices: 3308160--3308214 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
3308150 TGAATTACTG
*
3308160 ATTACAGCTTTATTCA
1 ATTACAGCTCTATTCA
*
3308176 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCA
3308192 ATTACAGCTCTATTTC-
1 ATTACAGCTCTA-TTCA
3308208 ATTACAG
1 ATTACAG
3308215 TGAACCAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
16 32 0.91
17 3 0.09
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:3312191 original size:109 final size:110
Alignment explanation
Indices: 3312066--3312291 Score: 418
Period size: 109 Copynumber: 2.1 Consensus size: 110
3312056 TTAGAAACAG
3312066 AAAAACAAAGTAAATATCTGACAATTTCCCATAACTTACCTACAATAAAAAAATTTATGTTAGTT
1 AAAAACAAAGTAAATATCTGACAATTTCCCATAACTTACCTACAATAAAAAAATTTATGTTAGTT
* *
3312131 TACAATAATAATGTAATTAAAATAAATATAAACTATCTAAATATA
66 TACAATAATAATGTAATTAAAATAAAAATAAACTATCTAAACATA
3312176 AAAAACAAAG-AAATATCTGACAATTTCCCATAACTTACCTACAATAAAAAAATTTATGTTAGTT
1 AAAAACAAAGTAAATATCTGACAATTTCCCATAACTTACCTACAATAAAAAAATTTATGTTAGTT
*
3312240 TACAATAATAATGTAATTAAAATAAAAATAAACTATCTAAGCATA
66 TACAATAATAATGTAATTAAAATAAAAATAAACTATCTAAACATA
3312285 AAAAACA
1 AAAAACA
3312292 TACAAATTAA
Statistics
Matches: 113, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
109 103 0.91
110 10 0.09
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (110 bp):
AAAAACAAAGTAAATATCTGACAATTTCCCATAACTTACCTACAATAAAAAAATTTATGTTAGTT
TACAATAATAATGTAATTAAAATAAAAATAAACTATCTAAACATA
Found at i:3312480 original size:105 final size:97
Alignment explanation
Indices: 3312332--3312757 Score: 436
Period size: 105 Copynumber: 4.3 Consensus size: 97
3312322 TTATATAAAA
3312332 ATTACATAAAAAATCACAAAACACTAAACTGAACGCTAACAATTTATATAACCTAATCATAAATT
1 ATTAC-TAAAAAATCACAAAACAC--AA---AACGCTAACAA-TT-TATAACCTAATCATAAATT
* *
3312397 ACTAGCAAAATAACTATAAAATTAATTTTTAAAAAAATTTC
58 ACTAACAAAATAACTATAAAATT-ATTTTTAAAAAAATTAC
* * * * * * *
3312438 ATTACTAAAAAGTCACGAAACACTAAA--CTAACCA---CTAA-C-AAT-TTATATTACTAACAA
1 ATTACTAAAAAATCACAAAACACAAAACGCTAACAATTTATAACCTAATCATAAATTACTAACAA
**
3312495 AATAACTATAAAATTATTTTTTTTAAAAATTAC
66 AATAACTATAAAATTA-TTTTTAAAAAAATTAC
*
3312528 ATTACTAAAAAAATAACAAAACACAAAACGCTAACAATTTATAACCTAATCCCATAAATTACTAA
1 ATTACT-AAAAAATCACAAAACACAAAACGCTAACAATTTATAACCTAAT--CATAAATTACTAA
* *
3312593 CAAAATAAATAACTATAACATTTTTTTTAAAAGAAATTAC
63 C---A-AAATAACTATAAAATTATTTTTAAAA-AAATTAC
* *
3312633 ATTACTAAAAAAATAACAAAACACAAAACGCTAACAATTTATAACCTAATCATAAACTACTAACA
1 ATTACT-AAAAAATCACAAAACACAAAACGCTAACAATTTATAACCTAATCATAAATTACTAACA
* *
3312698 AATTAACTATAAAATTATTTTTAAAAAAAATTTAT
65 AAATAACTATAAAATTATTTTT-AAAAAAA-TTAC
*
3312733 ATTACTAAAAACTCACAAAACACAA
1 ATTACTAAAAAATCACAAAACACAA
3312758 CAATTTATAA
Statistics
Matches: 271, Mismatches: 30, Indels: 45
0.78 0.09 0.13
Matches are distributed among these distances:
89 1 0.00
90 46 0.17
91 20 0.07
92 1 0.00
93 9 0.03
96 3 0.01
97 1 0.00
98 9 0.03
99 39 0.14
100 16 0.06
101 11 0.04
103 14 0.05
104 8 0.03
105 88 0.32
106 5 0.02
ACGTcount: A:0.54, C:0.16, G:0.02, T:0.29
Consensus pattern (97 bp):
ATTACTAAAAAATCACAAAACACAAAACGCTAACAATTTATAACCTAATCATAAATTACTAACAA
AATAACTATAAAATTATTTTTAAAAAAATTAC
Found at i:3316359 original size:3 final size:3
Alignment explanation
Indices: 3316353--3316578 Score: 452
Period size: 3 Copynumber: 75.3 Consensus size: 3
3316343 ATTATTATTA
3316353 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
3316401 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
3316449 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
3316497 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
3316545 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
3316579 AATACCCAAT
Statistics
Matches: 223, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 223 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:3317997 original size:2 final size:2
Alignment explanation
Indices: 3317990--3318027 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
3317980 TTTATTTCTG
3317990 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3318028 GGAAACCATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3318621 original size:3 final size:3
Alignment explanation
Indices: 3318615--3318675 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
3318605 ATTATTATTA
3318615 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
3318663 TTG TTG TTG TTG T
1 TTG TTG TTG TTG T
3318676 AATACCCAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:3321664 original size:33 final size:35
Alignment explanation
Indices: 3321607--3321677 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 35
3321597 TACTCTTTTG
* *
3321607 TTATGTTATGCTTGAAAGTTTTGTTAAGGGATTAC
1 TTATGTTATGCTTGAAAATTTTGTTAAGGGACTAC
*
3321642 TTATGTT-TGCTT-AAAATTTTGTTAATGGACTAC
1 TTATGTTATGCTTGAAAATTTTGTTAAGGGACTAC
3321675 TTA
1 TTA
3321678 CATTTATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 21 0.64
34 5 0.15
35 7 0.21
ACGTcount: A:0.27, C:0.07, G:0.18, T:0.48
Consensus pattern (35 bp):
TTATGTTATGCTTGAAAATTTTGTTAAGGGACTAC
Found at i:3328565 original size:91 final size:91
Alignment explanation
Indices: 3328410--3328591 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
3328400 CGTGCCAATG
*
3328410 AAAGTGGCCACTACGGTCATCACAACGACATAAAGCTTACTTGTGTTTAAATTTGTCAATTTTTG
1 AAAGTGGCCACTACGGTCATCACAACGACATAAAGCTTACTTGTGTTTAAAGTTGTCAATTTTTG
3328475 AAACAAAATCTTTGGGCTATGATTGA
66 AAACAAAATCTTTGGGCTATGATTGA
*
3328501 AAAGTGGCCACTACGGTCATCACAATGACATAAAGCTTACTTGTGTTTAAAGTTGTCAATTTTTG
1 AAAGTGGCCACTACGGTCATCACAACGACATAAAGCTTACTTGTGTTTAAAGTTGTCAATTTTTG
3328566 AAACAAAATCTTTGGGCTATGATTGA
66 AAACAAAATCTTTGGGCTATGATTGA
3328592 TGCTGATATT
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (91 bp):
AAAGTGGCCACTACGGTCATCACAACGACATAAAGCTTACTTGTGTTTAAAGTTGTCAATTTTTG
AAACAAAATCTTTGGGCTATGATTGA
Found at i:3333267 original size:18 final size:18
Alignment explanation
Indices: 3333244--3333325 Score: 72
Period size: 18 Copynumber: 5.0 Consensus size: 18
3333234 TAAAATTAAA
*
3333244 ATCATAAAAATATAGAAT
1 ATCATAAAAATATAAAAT
3333262 ATCATAAAAATATAAAAT
1 ATCATAAAAATATAAAAT
*
3333280 AT--TTAAAAT-TAAAA-
1 ATCATAAAAATATAAAAT
* *
3333294 AT-AT-AAAAGAGAAAA-
1 ATCATAAAAATATAAAAT
3333309 AT-ATAAAAATATAAAAT
1 ATCATAAAAATATAAAAT
3333326 TTATTATAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
14 6 0.11
15 14 0.26
16 15 0.28
18 19 0.35
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
ATCATAAAAATATAAAAT
Found at i:3333278 original size:7 final size:7
Alignment explanation
Indices: 3333234--3333325 Score: 53
Period size: 7 Copynumber: 11.9 Consensus size: 7
3333224 TTGTATTTTT
3333234 TAAAAT-
1 TAAAATA
3333240 TAAAATCA
1 TAAAAT-A
3333248 TAAAAATA
1 T-AAAATA
3333256 TAGAATATCA
1 TA-AA-AT-A
3333266 TAAAAATA
1 T-AAAATA
3333274 TAAAATA
1 TAAAATA
3333281 TTTAAAAT-
1 --TAAAATA
3333289 TAAAAATA
1 T-AAAATA
*
3333297 TAAAAGA
1 TAAAATA
*
3333304 GAAAAATA
1 -TAAAATA
3333312 TAAAAATA
1 T-AAAATA
3333320 TAAAAT
1 TAAAAT
3333326 TTATTATAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 25
0.70 0.04 0.26
Matches are distributed among these distances:
6 7 0.10
7 22 0.32
8 20 0.29
9 15 0.22
10 4 0.06
11 1 0.01
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.27
Consensus pattern (7 bp):
TAAAATA
Found at i:3333278 original size:8 final size:8
Alignment explanation
Indices: 3333241--3333324 Score: 75
Period size: 8 Copynumber: 10.4 Consensus size: 8
3333231 TTTTAAAATT
3333241 AAAATCATA
1 AAAAT-ATA
3333250 AAAATATA
1 AAAATATA
*
3333258 GAATATCATA
1 -AAAAT-ATA
3333268 AAAATAT-
1 AAAATATA
*
3333275 AAAATATTT
1 AAAATA-TA
3333284 AAAAT-TA
1 AAAATATA
3333291 AAAATAT-
1 AAAATATA
* *
3333298 AAAAGAGA
1 AAAATATA
3333306 AAAATATA
1 AAAATATA
3333314 AAAATATA
1 AAAATATA
3333322 AAA
1 AAA
3333325 TTTATTATAA
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
7 17 0.27
8 24 0.39
9 18 0.29
10 3 0.05
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (8 bp):
AAAATATA
Found at i:3333296 original size:23 final size:24
Alignment explanation
Indices: 3333265--3333325 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
3333255 ATAGAATATC
3333265 ATAAAAATATAAAATATTTAAAAT
1 ATAAAAATATAAAATATTTAAAAT
* **
3333289 -TAAAAATATAAAAGA-GAAAAAT
1 ATAAAAATATAAAATATTTAAAAT
3333311 ATAAAAATATAAAAT
1 ATAAAAATATAAAAT
3333326 TTATTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 5 0.16
23 27 0.84
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.26
Consensus pattern (24 bp):
ATAAAAATATAAAATATTTAAAAT
Found at i:3348541 original size:23 final size:24
Alignment explanation
Indices: 3348499--3348544 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
3348489 TCACGAACAA
3348499 ACTCATTTATTAGCTCGTTTATTG
1 ACTCATTTATTAGCTCGTTTATTG
*
3348523 ACTCATTTA-TGGCTCGTTTATT
1 ACTCATTTATTAGCTCGTTTATT
3348545 TATTAAAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (24 bp):
ACTCATTTATTAGCTCGTTTATTG
Found at i:3348669 original size:24 final size:23
Alignment explanation
Indices: 3348642--3348699 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 23
3348632 TTATTAACAT
*
3348642 TGTTCGTGAACATGTTCAATTATA
1 TGTTCGTGAACATCTTCAATTA-A
* **
3348666 TGTTCATGAACATCTTCGTTTAA
1 TGTTCGTGAACATCTTCAATTAA
3348689 TGTTCGTGAAC
1 TGTTCGTGAAC
3348700 GTATTCGATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 11 0.38
24 18 0.62
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (23 bp):
TGTTCGTGAACATCTTCAATTAA
Found at i:3348706 original size:23 final size:23
Alignment explanation
Indices: 3348642--3348712 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
3348632 TTATTAACAT
* *
3348642 TGTTCGTGAACATGTTCAATTATA
1 TGTTCGTGAACATATTCGATTA-A
* * *
3348666 TGTTCATGAACATCTTCGTTTAA
1 TGTTCGTGAACATATTCGATTAA
*
3348689 TGTTCGTGAACGTATTCGATTAA
1 TGTTCGTGAACATATTCGATTAA
3348712 T
1 T
3348713 TTAAATGAAC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
23 21 0.54
24 18 0.46
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (23 bp):
TGTTCGTGAACATATTCGATTAA
Found at i:3350263 original size:16 final size:18
Alignment explanation
Indices: 3350228--3350264 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
3350218 TGCAATATGA
3350228 TTTTTACAATATTATTTC
1 TTTTTACAATATTATTTC
*
3350246 TTTTTATAAT-TT-TTTC
1 TTTTTACAATATTATTTC
3350262 TTT
1 TTT
3350265 AAATATTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTACAATATTATTTC
Found at i:3360254 original size:21 final size:22
Alignment explanation
Indices: 3360228--3360274 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
3360218 CTCTGCTCAA
*
3360228 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
3360249 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
3360271 ACTC
1 ACTC
3360275 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:3367948 original size:17 final size:18
Alignment explanation
Indices: 3367928--3367967 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
3367918 TTTTATATTG
3367928 AATTGTGATTTATGTGA-
1 AATTGTGATTTATGTGAT
3367945 AATTGTGATTTATGTGAT
1 AATTGTGATTTATGTGAT
3367963 AATTG
1 AATTG
3367968 AGTATTGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (18 bp):
AATTGTGATTTATGTGAT
Found at i:3369919 original size:45 final size:45
Alignment explanation
Indices: 3369868--3369956 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
3369858 AATTATTTAG
*
3369868 CCCAACAAAATAACTACAAATACTAGCATTTTAAATAATCTAAAC
1 CCCAACAAAATAACCACAAATACTAGCATTTTAAATAATCTAAAC
3369913 CCCAACAAAATAACCACAAATACTAGCATTTTAAATAATCTAAA
1 CCCAACAAAATAACCACAAATACTAGCATTTTAAATAATCTAAA
3369957 AAAATTCTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.52, C:0.22, G:0.02, T:0.24
Consensus pattern (45 bp):
CCCAACAAAATAACCACAAATACTAGCATTTTAAATAATCTAAAC
Found at i:3371498 original size:207 final size:207
Alignment explanation
Indices: 3371143--3371557 Score: 812
Period size: 207 Copynumber: 2.0 Consensus size: 207
3371133 GAGCAGTATA
3371143 TAGTTGGAGTTGCAGGTGTTATAGCCTTTCTTTTGGGGTTTGTTTTCTTAGTGAGATCTTGGGGG
1 TAGTTGGAGTTGCAGGTGTTATAGCCTTTCTTTTGGGGTTTGTTTTCTTAGTGAGATCTTGGGGG
3371208 CTGAGCAAGCTGAAAAGAGCAGCTTCAATGGAATTCCCAAAGGAAAACTGTGTAAACAAAAATGG
66 CTGAGCAAGCTGAAAAGAGCAGCTTCAATGGAATTCCCAAAGGAAAACTGTGTAAACAAAAATGG
*
3371273 AAATGGTGAGGGTGAGGGTGAGGCTGTTGGCACTACGGAAGTTATCATAGTCGGTGCTGGTGTTG
131 AAATGGTGAGGGTGAGGGTGAGGCTGTTGGCACTACGGAAATTATCATAGTCGGTGCTGGTGTTG
3371338 CCGGTGCTGCTC
196 CCGGTGCTGCTC
3371350 TAGTTGGAGTTGCAGGTGTTATAGCCTTTCTTTTGGGGTTTGTTTTCTTAGTGAGATCTTGGGGG
1 TAGTTGGAGTTGCAGGTGTTATAGCCTTTCTTTTGGGGTTTGTTTTCTTAGTGAGATCTTGGGGG
*
3371415 CTGAGCAAGCTGAAAAGAGCAGCTTCAATGGAATTCCCAAAGGAAAGCTGTGTAAACAAAAATGG
66 CTGAGCAAGCTGAAAAGAGCAGCTTCAATGGAATTCCCAAAGGAAAACTGTGTAAACAAAAATGG
3371480 AAATGGTGAGGGTGAGGGTGAGGCTGTTGGCACTACGGAAATTATCATAGTCGGTGCTGGTGTTG
131 AAATGGTGAGGGTGAGGGTGAGGCTGTTGGCACTACGGAAATTATCATAGTCGGTGCTGGTGTTG
3371545 CCGGTGCTGCTC
196 CCGGTGCTGCTC
3371557 T
1 T
3371558 TGCCTATTCT
Statistics
Matches: 206, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
207 206 1.00
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.30
Consensus pattern (207 bp):
TAGTTGGAGTTGCAGGTGTTATAGCCTTTCTTTTGGGGTTTGTTTTCTTAGTGAGATCTTGGGGG
CTGAGCAAGCTGAAAAGAGCAGCTTCAATGGAATTCCCAAAGGAAAACTGTGTAAACAAAAATGG
AAATGGTGAGGGTGAGGGTGAGGCTGTTGGCACTACGGAAATTATCATAGTCGGTGCTGGTGTTG
CCGGTGCTGCTC
Found at i:3372970 original size:14 final size:15
Alignment explanation
Indices: 3372948--3373024 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
3372938 CAATCAAACA
3372948 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
3372962 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
3372977 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
3372997 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
3373011 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
3373025 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:3372989 original size:20 final size:20
Alignment explanation
Indices: 3372964--3373003 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
3372954 AATATTTTCC
*
3372964 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
3372984 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
3373004 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:3373009 original size:34 final size:35
Alignment explanation
Indices: 3372952--3373018 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
3372942 CAAACACCAG
*
3372952 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
3372987 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
3373019 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:3376907 original size:9 final size:9
Alignment explanation
Indices: 3376893--3376917 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
3376883 TTTTTTATTT
3376893 AAATTTTTA
1 AAATTTTTA
3376902 AAATTTTTA
1 AAATTTTTA
3376911 AAATTTT
1 AAATTTT
3376918 AAATTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
AAATTTTTA
Found at i:3386895 original size:17 final size:17
Alignment explanation
Indices: 3386872--3386912 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
3386862 GTAAAAATAT
3386872 AATTTTACTA-TTTT-TA
1 AATTTTA-TACTTTTATA
3386888 ATATTTTATACTTTTATA
1 A-ATTTTATACTTTTATA
3386906 AATTTTA
1 AATTTTA
3386913 AAAGATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 3 0.14
17 16 0.73
18 3 0.14
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (17 bp):
AATTTTATACTTTTATA
Found at i:3388055 original size:19 final size:17
Alignment explanation
Indices: 3388033--3388068 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
3388023 TATTTTTTTG
3388033 TTATTGTATAACTTTTGTT
1 TTATTGT-TAA-TTTTGTT
3388052 TTATTGTTAATTTTGTT
1 TTATTGTTAATTTTGTT
3388069 ACTATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTATTGTTAATTTTGTT
Found at i:3398174 original size:4 final size:4
Alignment explanation
Indices: 3398165--3398190 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
3398155 TCTCAAATAT
3398165 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
3398191 GTATCTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:3399287 original size:41 final size:41
Alignment explanation
Indices: 3399230--3399389 Score: 239
Period size: 41 Copynumber: 3.9 Consensus size: 41
3399220 TTTTATTATT
*
3399230 ATTAGCGGTGCTATTTCAAAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTATTTCAAAAACGCCGCTAAAGGCCCGAGC
*
3399271 ATTAGCGGCGCTATTTCAAAAAAGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTATTTCAAAAACGCCGCTAAAGGCCCGAGC
* * *
3399312 ATTAGCGGCGCTATCTCAAAAACGCTGCTAAAGGACCGAGC
1 ATTAGCGGCGCTATTTCAAAAACGCCGCTAAAGGCCCGAGC
* * * *
3399353 ATTAGTGGCACTACTCCAAAAACGCCGCTAAAGGCCC
1 ATTAGCGGCGCTATTTCAAAAACGCCGCTAAAGGCCC
3399390 CAAAAACTCA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 106 1.00
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.17
Consensus pattern (41 bp):
ATTAGCGGCGCTATTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:3399517 original size:40 final size:40
Alignment explanation
Indices: 3399464--3399558 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
3399454 AATTCTTATT
*
3399464 TTTAGCGGCGTTTTTCGAAAAGCGCCGCTAATGCTCGATC
1 TTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGATC
* * * * *
3399504 TTTAGCTGTGTTTTTATAAAAGCGCCGCTAATGCTTGATT
1 TTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGATC
**
3399544 TTTAGTAGCGTTTTT
1 TTTAGCGGCGTTTTT
3399559 TATCCAAACG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGATC
Found at i:3403821 original size:19 final size:19
Alignment explanation
Indices: 3403778--3403825 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
3403768 TTAGGTTATA
*
3403778 ATCACTTCAA-TT-TTTGG
1 ATCATTTCAAGTTGTTTGG
3403795 -TC-TTTCAAGTTGTTTGG
1 ATCATTTCAAGTTGTTTGG
3403812 ATCATTTCAAGTTG
1 ATCATTTCAAGTTG
3403826 GAGCGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 4 0.15
17 5 0.19
18 2 0.08
19 10 0.38
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.48
Consensus pattern (19 bp):
ATCATTTCAAGTTGTTTGG
Found at i:3420963 original size:128 final size:128
Alignment explanation
Indices: 3420735--3420974 Score: 453
Period size: 128 Copynumber: 1.9 Consensus size: 128
3420725 GAGAATTGGG
* *
3420735 TTTTTTTTTTCTCAGCAACCAAACGAGCTAAGAAATCTGAAAGGAAAGTGAAAAAGATATAACCT
1 TTTTTTTTTTCTCAGCAACCAAACAAGCTAAGAAATCTGAAAAGAAAGTGAAAAAGATATAACCT
*
3420800 TGAATTGGAACTAGTGTTTGGCTTTTGAGTCAAAGCAGTCAAATGAATTGGTTCTTCTTTTTT
66 TGAATTGAAACTAGTGTTTGGCTTTTGAGTCAAAGCAGTCAAATGAATTGGTTCTTCTTTTTT
3420863 TTTTTTTTTTCTCAGCAACCAAACAAGCTAAGAAATCTGAAAAGAAAGTGAAAAAGATATAACCT
1 TTTTTTTTTTCTCAGCAACCAAACAAGCTAAGAAATCTGAAAAGAAAGTGAAAAAGATATAACCT
3420928 TGAATTGAAACTAGTGTTTGGCTTTTGAGTCAAAGCAGTCAAATGAA
66 TGAATTGAAACTAGTGTTTGGCTTTTGAGTCAAAGCAGTCAAATGAA
3420975 ATTACTCAAA
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 109 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (128 bp):
TTTTTTTTTTCTCAGCAACCAAACAAGCTAAGAAATCTGAAAAGAAAGTGAAAAAGATATAACCT
TGAATTGAAACTAGTGTTTGGCTTTTGAGTCAAAGCAGTCAAATGAATTGGTTCTTCTTTTTT
Found at i:3423301 original size:174 final size:175
Alignment explanation
Indices: 3423002--3423349 Score: 488
Period size: 174 Copynumber: 2.0 Consensus size: 175
3422992 GTTCCTAAGT
* *
3423002 TGTTTTTTACAATTTTGATCCTATTTCATGTTCAATGAAAACGACCAAAAGTTTGTTTTAATGTG
1 TGTTTTTTACAATTTCGATCCTATTTCATGTTCAATGAAAACGACCAAAAG-TTGTTTGAATGTG
*
3423067 GTTTTTGAGTTATAAGCAATCATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTA
65 GTTTTTGAGTTATAAGCAATCATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTCTGGTTGTTTTA
* *
3423132 TAATATTATGTTGATTGCTAGTTGAGGTCTTTTGGTGGCAATAGTA
130 TAATATTATGTTGATTGCTAGTTGAGATCTTTTGGTGCCAATAGTA
* *
3423178 TGTTTTTTAGC-ATTTCGATCCTATTTTCATGTTGAATGAAAACGACCAAAAG-TG-TTGGATGT
1 TGTTTTTTA-CAATTTCGATCCTA-TTTCATGTTCAATGAAAACGACCAAAAGTTGTTTGAATGT
* * * * *
3423240 -GTTTTTCGAGTTATATGCACTTATCAAATCTTTTTGGCTCAAGCTGTGTAATTTCTGGTTGTTT
64 GGTTTTT-GAGTTATAAGCAATCATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTCTGGTTGTTT
* * * *
3423304 TGTAATATTATGTTGGTTGTTTGTTGAGATCTTTTGGTGCCAATAG
128 TATAATATTATGTTGATTGCTAGTTGAGATCTTTTGGTGCCAATAG
3423350 CCTGGTAGCA
Statistics
Matches: 153, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
173 6 0.04
174 97 0.63
175 2 0.01
176 20 0.13
177 28 0.18
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (175 bp):
TGTTTTTTACAATTTCGATCCTATTTCATGTTCAATGAAAACGACCAAAAGTTGTTTGAATGTGG
TTTTTGAGTTATAAGCAATCATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTCTGGTTGTTTTAT
AATATTATGTTGATTGCTAGTTGAGATCTTTTGGTGCCAATAGTA
Found at i:3429991 original size:174 final size:175
Alignment explanation
Indices: 3429692--3430039 Score: 461
Period size: 174 Copynumber: 2.0 Consensus size: 175
3429682 GTTCCTAAGT
* * *
3429692 TGTTTTTTACAATTTTGATCCTATTTCATGTTCAATGAAAACGACCAAAAGTTTGTTTTAATGTG
1 TGTTTTTTACAATTTCGATCCTATTTCATGTTCAATGAAAACGACCAAAAG-TTGTTTGAAGGTG
*
3429757 GTTTTTGAGTTATAAGCAATCATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTA
65 GTTTTTGAGTTATAAGCAATCATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTCTGGTTGTTTTA
* *
3429822 TAATATTATGTTGATTGCTAGTTGAGGTCTTTTGGTGGCAATAGTA
130 TAATATTATGTTGATTGCTAGTTGAGATCTTTTGGTGCCAATAGTA
* * *
3429868 TGTTTTTTAGC-ATTTCGATCCTATTTTCATGTTGAATGAAAACGACCAGAAG-TG-TTGGAGGT
1 TGTTTTTTA-CAATTTCGATCCTA-TTTCATGTTCAATGAAAACGACCAAAAGTTGTTTGAAGGT
* ** * * *
3429930 -GTTTTTCGAGTTATATGCCCTTATCAAATCTTTTTGGCTCAAGCTGTGTAATTTCTGGTTGTTT
64 GGTTTTT-GAGTTATAAGCAATCATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTCTGGTTGTTT
* * * *
3429994 TGTAATATTATGTTGGTTGTTTGTTGAGATCTTTTGGTGCCAATAG
128 TATAATATTATGTTGATTGCTAGTTGAGATCTTTTGGTGCCAATAG
3430040 CCTGGTAGCA
Statistics
Matches: 150, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
173 6 0.04
174 95 0.63
175 2 0.01
176 20 0.13
177 27 0.18
ACGTcount: A:0.23, C:0.11, G:0.21, T:0.44
Consensus pattern (175 bp):
TGTTTTTTACAATTTCGATCCTATTTCATGTTCAATGAAAACGACCAAAAGTTGTTTGAAGGTGG
TTTTTGAGTTATAAGCAATCATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTCTGGTTGTTTTAT
AATATTATGTTGATTGCTAGTTGAGATCTTTTGGTGCCAATAGTA
Found at i:3434451 original size:32 final size:32
Alignment explanation
Indices: 3434396--3434494 Score: 128
Period size: 32 Copynumber: 3.1 Consensus size: 32
3434386 TAACTATTGG
*
3434396 TAATTAAAATCAATGCT-TAATTAAGCCTTGATT
1 TAATT-AAATCAATGCTAT-ATTAAGGCTTGATT
* *
3434429 TAATTAAATCAAAGCTATATTAAGGTTTGATT
1 TAATTAAATCAATGCTATATTAAGGCTTGATT
* *
3434461 TAATTAAATCAATGCCATATGAAGGCTTGATT
1 TAATTAAATCAATGCTATATTAAGGCTTGATT
3434493 TA
1 TA
3434495 GGCCGGTCTT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
32 52 0.90
33 6 0.10
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (32 bp):
TAATTAAATCAATGCTATATTAAGGCTTGATT
Found at i:3441521 original size:102 final size:103
Alignment explanation
Indices: 3441399--3441604 Score: 405
Period size: 102 Copynumber: 2.0 Consensus size: 103
3441389 GTAGTGTTTT
3441399 TTTAGTATAAATATTTTTAATAAATTTTTAATGTGTTAGAAAACTTTTAATTTAGCATTTTTTAG
1 TTTAGTATAAATATTTTTAATAAATTTTTAATGTGTTAGAAAACTTTTAATTTAGCATTTTTTAG
3441464 TGAATTTAGTGTACTATATTTTTTAAAAAAAAATTAAA
66 TGAATTTAGTGTACTATATTTTTTAAAAAAAAATTAAA
3441502 TTTAGTATAAA-ATTTTTAATAAATTTTTAATGTGTTAGAAAACTTTTAATTTAGCATTTTTTAG
1 TTTAGTATAAATATTTTTAATAAATTTTTAATGTGTTAGAAAACTTTTAATTTAGCATTTTTTAG
3441566 TGAATTTAGTGTACTATATTTTTTAAAAAAAAATTAAA
66 TGAATTTAGTGTACTATATTTTTTAAAAAAAAATTAAA
3441604 T
1 T
3441605 AAAGAATAAT
Statistics
Matches: 103, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
102 92 0.89
103 11 0.11
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.49
Consensus pattern (103 bp):
TTTAGTATAAATATTTTTAATAAATTTTTAATGTGTTAGAAAACTTTTAATTTAGCATTTTTTAG
TGAATTTAGTGTACTATATTTTTTAAAAAAAAATTAAA
Found at i:3442445 original size:36 final size:36
Alignment explanation
Indices: 3442396--3442474 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
3442386 AAACCTTTTT
* *
3442396 ATCAATTCAAACTCGAATTCAAGCAAAAATAATCGA
1 ATCAAGTCAAACTCAAATTCAAGCAAAAATAATCGA
*
3442432 ATCAAGTCGAACTCAAATTCAAGCAAAAATAATCGA
1 ATCAAGTCAAACTCAAATTCAAGCAAAAATAATCGA
3442468 ATCAAGT
1 ATCAAGT
3442475 TTGACTTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.22
Consensus pattern (36 bp):
ATCAAGTCAAACTCAAATTCAAGCAAAAATAATCGA
Found at i:3448829 original size:4 final size:4
Alignment explanation
Indices: 3448820--3448855 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
3448810 AAATCTGCCA
*
3448820 TATG TATG TATG TATG TATG TATG TATG TATA TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG
3448856 CAAAGCTCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:3451523 original size:141 final size:140
Alignment explanation
Indices: 3451340--3451619 Score: 524
Period size: 141 Copynumber: 2.0 Consensus size: 140
3451330 TAAGAAATTC
* * *
3451340 GATATAAATGTTTTTTAGAATACAAATTAATCCGATATGAGAAATGAAAACTATAAGCCAATTTG
1 GATATAAATATTATTTAGAATACAAATTAATCAGATATGAGAAATGAAAACTATAAGCCAATTTG
3451405 CTACTTTTATAAAACGTAATTCGATGGAGTAGTTTTTTTCTAATTCATTTAATATCAACAATATA
66 CTACTTTTATAAAACGTAATTCGATGGAGTAG-TTTTTTCTAATTCATTTAATATCAACAATATA
3451470 CAATTTATTAA
130 CAATTTATTAA
3451481 GATATAAATATTATTTAGAATACAAATTAATCAGATATGAGAAATGAAAACTATAAGCCAATTTG
1 GATATAAATATTATTTAGAATACAAATTAATCAGATATGAGAAATGAAAACTATAAGCCAATTTG
3451546 CTACTTTTATAAAACGTAATTCGATGGAGTAGTTTTTTCTAATTCATTTAATATCAACAATATAC
66 CTACTTTTATAAAACGTAATTCGATGGAGTAGTTTTTTCTAATTCATTTAATATCAACAATATAC
3451611 AATTTATTA
131 AATTTATTA
3451620 GAACGTGAGA
Statistics
Matches: 136, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
140 42 0.31
141 94 0.69
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (140 bp):
GATATAAATATTATTTAGAATACAAATTAATCAGATATGAGAAATGAAAACTATAAGCCAATTTG
CTACTTTTATAAAACGTAATTCGATGGAGTAGTTTTTTCTAATTCATTTAATATCAACAATATAC
AATTTATTAA
Found at i:3452087 original size:19 final size:18
Alignment explanation
Indices: 3452057--3452096 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
3452047 TTGTTTTTTT
*
3452057 TTTATATATATTATGTAA
1 TTTATATATATTATATAA
3452075 TTTATAGTATATTATATAA
1 TTTATA-TATATTATATAA
3452094 TTT
1 TTT
3452097 TAAATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTATATATATTATATAA
Found at i:3452104 original size:19 final size:19
Alignment explanation
Indices: 3452056--3452105 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
3452046 TTTGTTTTTT
* *
3452056 TTTTATATATATTATGTAA
1 TTTTAAATATATTATATAA
*
3452075 -TTTATAGTATATTATATAA
1 TTTTA-AATATATTATATAA
3452094 TTTTAAATATAT
1 TTTTAAATATAT
3452106 AATAATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 4 0.16
19 17 0.68
20 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (19 bp):
TTTTAAATATATTATATAA
Found at i:3452196 original size:21 final size:21
Alignment explanation
Indices: 3452171--3452215 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
3452161 AAAATCATCT
*
3452171 AAAATATTAAATATTAAATTA
1 AAAATAATAAATATTAAATTA
* * *
3452192 AAAATAATATATATTTACTTA
1 AAAATAATAAATATTAAATTA
3452213 AAA
1 AAA
3452216 CGAGCTTAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATAATAAATATTAAATTA
Found at i:3454345 original size:2 final size:2
Alignment explanation
Indices: 3454324--3454368 Score: 67
Period size: 2 Copynumber: 23.0 Consensus size: 2
3454314 AATCAAATTC
3454324 AT AT -T AT AT GAT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3454365 AT AT
1 AT AT
3454369 CATAGTAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
1 2 0.05
2 36 0.90
3 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:3455635 original size:29 final size:30
Alignment explanation
Indices: 3455601--3455659 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
3455591 TCGCGTGTAT
*
3455601 AATTGCAC-CAAATTAAAATTCATGTATAC
1 AATTGCACACAAATCAAAATTCATGTATAC
*
3455630 AATTGCACATTAAATCAAAATTCATGTATA
1 AATTGCACA-CAAATCAAAATTCATGTATA
3455660 ATTTTGAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
31 18 0.69
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (30 bp):
AATTGCACACAAATCAAAATTCATGTATAC
Found at i:3455662 original size:29 final size:27
Alignment explanation
Indices: 3455596--3455662 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 27
3455586 GAGTTTCGCG
*
3455596 TGTATAATTGCACCAAATTAAAATTCA
1 TGTATAATTGCACCAAATCAAAATTCA
*
3455623 TGTATACAATTGCACATTAAATCAAAATTCA
1 TGTAT--AATTGCAC--CAAATCAAAATTCA
3455654 TGTATAATT
1 TGTATAATT
3455663 TTGAGATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 5 0.15
29 12 0.35
31 17 0.50
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.36
Consensus pattern (27 bp):
TGTATAATTGCACCAAATCAAAATTCA
Found at i:3457591 original size:299 final size:299
Alignment explanation
Indices: 3457053--3457651 Score: 1198
Period size: 299 Copynumber: 2.0 Consensus size: 299
3457043 AGGTTTTGCC
3457053 GTTTTGGGGGCTACATGGACACGCGAATGTAATTATTTCACATAGAGGGAAAGGATTTTTATAAA
1 GTTTTGGGGGCTACATGGACACGCGAATGTAATTATTTCACATAGAGGGAAAGGATTTTTATAAA
3457118 AAAGAATTTAATTATAACTTTAATTAAATTTAAATTTAATTATTTTATTTAAAAATATAAATATC
66 AAAGAATTTAATTATAACTTTAATTAAATTTAAATTTAATTATTTTATTTAAAAATATAAATATC
3457183 ATCAAAATAATATTAATAATCATTTAAGAGAAGAAAATGAAAACTTTATCCCAGGGAACCCGCAG
131 ATCAAAATAATATTAATAATCATTTAAGAGAAGAAAATGAAAACTTTATCCCAGGGAACCCGCAG
3457248 CGGAGCTTTTCACCGGCTTTGAGCTTGTATGGAAGGCTTTCAAAGTGGGGTTTTGTGCTGGGAGA
196 CGGAGCTTTTCACCGGCTTTGAGCTTGTATGGAAGGCTTTCAAAGTGGGGTTTTGTGCTGGGAGA
3457313 AAGGACTATTTATTGGAAAAGAAGGGCCTTTTTGGGGGG
261 AAGGACTATTTATTGGAAAAGAAGGGCCTTTTTGGGGGG
3457352 GTTTTGGGGGCTACATGGACACGCGAATGTAATTATTTCACATAGAGGGAAAGGATTTTTATAAA
1 GTTTTGGGGGCTACATGGACACGCGAATGTAATTATTTCACATAGAGGGAAAGGATTTTTATAAA
3457417 AAAGAATTTAATTATAACTTTAATTAAATTTAAATTTAATTATTTTATTTAAAAATATAAATATC
66 AAAGAATTTAATTATAACTTTAATTAAATTTAAATTTAATTATTTTATTTAAAAATATAAATATC
3457482 ATCAAAATAATATTAATAATCATTTAAGAGAAGAAAATGAAAACTTTATCCCAGGGAACCCGCAG
131 ATCAAAATAATATTAATAATCATTTAAGAGAAGAAAATGAAAACTTTATCCCAGGGAACCCGCAG
3457547 CGGAGCTTTTCACCGGCTTTGAGCTTGTATGGAAGGCTTTCAAAGTGGGGTTTTGTGCTGGGAGA
196 CGGAGCTTTTCACCGGCTTTGAGCTTGTATGGAAGGCTTTCAAAGTGGGGTTTTGTGCTGGGAGA
3457612 AAGGACTATTTATTGGAAAAGAAGGGCCTTTTTGGGGGG
261 AAGGACTATTTATTGGAAAAGAAGGGCCTTTTTGGGGGG
3457651 G
1 G
3457652 GGGGGGGGGG
Statistics
Matches: 300, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
299 300 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (299 bp):
GTTTTGGGGGCTACATGGACACGCGAATGTAATTATTTCACATAGAGGGAAAGGATTTTTATAAA
AAAGAATTTAATTATAACTTTAATTAAATTTAAATTTAATTATTTTATTTAAAAATATAAATATC
ATCAAAATAATATTAATAATCATTTAAGAGAAGAAAATGAAAACTTTATCCCAGGGAACCCGCAG
CGGAGCTTTTCACCGGCTTTGAGCTTGTATGGAAGGCTTTCAAAGTGGGGTTTTGTGCTGGGAGA
AAGGACTATTTATTGGAAAAGAAGGGCCTTTTTGGGGGG
Done.