Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 16 of 75
Found at i:4565412 original size:21 final size:21
Alignment explanation
Indices: 4565259--4565413 Score: 98
Period size: 21 Copynumber: 7.3 Consensus size: 21
4565249 AAGCCCGAAG
* *
4565259 GCTGAACAGAAGCTCGTGAGA
1 GCTGAACAGAAGCTCATAAGA
* * * * *
4565280 GCTAAACAGAAACCCAGAAGG
1 GCTGAACAGAAGCTCATAAGA
* * *
4565301 GTTGAACAGGAGCTCGTAAGA
1 GCTGAACAGAAGCTCATAAGA
* * *
4565322 GCTAAAC-GAAAACTCATATGA
1 GCTGAACAG-AAGCTCATAAGA
*
4565343 GTTGAAACAGAAGCTCATAAGA
1 GCTG-AACAGAAGCTCATAAGA
** * *
4565365 GCTGAATGGAAACTCATAATA
1 GCTGAACAGAAGCTCATAAGA
*
4565386 GTTGAACAGAAGCTCA-ATAGA
1 GCTGAACAGAAGCTCATA-AGA
4565407 GCTGAAC
1 GCTGAAC
4565414 GAAAACTCAC
Statistics
Matches: 94, Mismatches: 36, Indels: 8
0.68 0.26 0.06
Matches are distributed among these distances:
20 2 0.02
21 75 0.80
22 16 0.17
23 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.17
Consensus pattern (21 bp):
GCTGAACAGAAGCTCATAAGA
Found at i:4567932 original size:10 final size:9
Alignment explanation
Indices: 4567887--4567934 Score: 53
Period size: 10 Copynumber: 5.2 Consensus size: 9
4567877 AAATATTAAA
4567887 AATATTTTT
1 AATATTTTT
4567896 -ATATTTTT
1 AATATTTTT
*
4567904 TATATTTTT
1 AATATTTTT
*
4567913 AAATAATTTT
1 -AATATTTTT
4567923 AATAATTTTT
1 AAT-ATTTTT
4567933 AA
1 AA
4567935 AAAAATTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
8 8 0.24
9 11 0.33
10 14 0.42
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
AATATTTTT
Found at i:4567949 original size:19 final size:18
Alignment explanation
Indices: 4567902--4567949 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
4567892 TTTTATATTT
* *
4567902 TTTATATTTTTAAATAAT
1 TTTATATTTTTAAAAAAA
4567920 TTTAATAATTTTTAAAAAAA
1 TTT-AT-ATTTTTAAAAAAA
4567940 TTTATCATTT
1 TTTAT-ATTT
4567950 ATTTTACTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 3 0.12
19 8 0.32
20 14 0.56
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTATATTTTTAAAAAAA
Found at i:4569620 original size:18 final size:19
Alignment explanation
Indices: 4569551--4569620 Score: 53
Period size: 18 Copynumber: 3.9 Consensus size: 19
4569541 TTATTTAATA
4569551 AATTTATATATTTTT--AT
1 AATTTATATATTTTTAAAT
* *
4569568 AATTT-TATGCTTTTTTAAT
1 AATTTATAT-ATTTTTAAAT
*
4569587 AATTT-T-TAGTTCTTAAAT
1 AATTTATATA-TTTTTAAAT
4569605 AATTTATAT-TTTTTAA
1 AATTTATATATTTTTAA
4569621 TTTAAAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
16 3 0.07
17 10 0.24
18 19 0.45
19 9 0.21
20 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (19 bp):
AATTTATATATTTTTAAAT
Found at i:4571113 original size:81 final size:82
Alignment explanation
Indices: 4571006--4571171 Score: 325
Period size: 81 Copynumber: 2.0 Consensus size: 82
4570996 ATAATGATTA
4571006 AAAAATTTGTGCAAATAAAAGAATATAAACAATTTAATTTTTAAGTGTAAGAAAAAAGTATTAAA
1 AAAAATTTGTGCAAATAAAAGAATATAAACAATTTAATTTTTAAGTGTAAGAAAAAAGTATTAAA
4571071 CAAATAAATGAATAAAT
66 CAAATAAATGAATAAAT
4571088 AAAAATTTGTGC-AATAAAAGAATATAAACAATTTAATTTTTAAGTGTAAGAAAAAAGTATTAAA
1 AAAAATTTGTGCAAATAAAAGAATATAAACAATTTAATTTTTAAGTGTAAGAAAAAAGTATTAAA
4571152 CAAATAAATGAATAAAT
66 CAAATAAATGAATAAAT
4571169 AAA
1 AAA
4571172 TAAATAAATT
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
81 72 0.86
82 12 0.14
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (82 bp):
AAAAATTTGTGCAAATAAAAGAATATAAACAATTTAATTTTTAAGTGTAAGAAAAAAGTATTAAA
CAAATAAATGAATAAAT
Found at i:4572570 original size:44 final size:44
Alignment explanation
Indices: 4572515--4572990 Score: 343
Period size: 44 Copynumber: 10.7 Consensus size: 44
4572505 TCATTCTAAC
* * * *
4572515 CCACTACAACTTCAAAGG-TATAGGATTTGTTGCTTCAATCTACT
1 CCACTGCAACTTC-AAGGAGATAAGATTTGTAGCTTCAATCTACT
* * * * *
4572559 CCACTGTAACTTCAGGGAGATAAGATTTGTGACTTGATTTAATCCAAC-
1 CCACTGCAACTTCAAGGAGATAAGATTTGT-A---GCTTCAAT-CTACT
* * * * *
4572607 CCACTGCAACTTCAAAGG-CATAGGATTTGTCGCTTTAATCTGCT
1 CCACTGCAACTTC-AAGGAGATAAGATTTGTAGCTTCAATCTACT
* * * *
4572651 CCACTGCAACTTCAGGGAGATTAGATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTACT
* ** * * *
4572695 CCATTATAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTACT
* *
4572739 CTACTGCAACTTC-AGAGAGATAAGATTTGTAGCTTTAATCTACT
1 CCACTGCAACTTCAAG-GAGATAAGATTTGTAGCTTCAATCTACT
* * * ** * *
4572783 CTACTACAACTTC-AGAGAGATATGATTTGCTATTTTCAATTTGCT
1 CCACTGCAACTTCAAG-GAGATAAGATTTG-TAGCTTCAATCTACT
* * * * * *
4572828 CCACTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAACCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTACT
* ** *
4572872 CTACTGCAACTTC-AGAGAGATAAGATTCACTATCTTCAATCTACT
1 CCACTGCAACTTCAAG-GAGATAAGATT-TGTAGCTTCAATCTACT
* * * * *
4572917 CTACTGTAACTTCAAGGAGATAAGATTTGTGGCTTGAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTACT
* * *
4572961 ACACTTCAACTTCAGGGAGATAAGATTTGT
1 CCACTGCAACTTCAAGGAGATAAGATTTGT
4572991 CACGATAACT
Statistics
Matches: 341, Mismatches: 76, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
43 10 0.03
44 229 0.67
45 65 0.19
46 3 0.01
48 28 0.08
49 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTACT
Found at i:4572669 original size:92 final size:92
Alignment explanation
Indices: 4572512--4572685 Score: 276
Period size: 92 Copynumber: 1.9 Consensus size: 92
4572502 ACTTCATTCT
* * *
4572512 AACCCACTACAACTTCAAAGGTATAGGATTTGTTGCTTCAATCTACTCCACTGTAACTTCAGGGA
1 AACCCACTACAACTTCAAAGGCATAGGATTTGTCGCTTCAATCTACTCCACTGCAACTTCAGGGA
*
4572577 GATAAGATTTGTGACTTGATTTAATCC
66 GATAAGATTTGTAACTTGATTTAATCC
* * *
4572604 AACCCACTGCAACTTCAAAGGCATAGGATTTGTCGCTTTAATCTGCTCCACTGCAACTTCAGGGA
1 AACCCACTACAACTTCAAAGGCATAGGATTTGTCGCTTCAATCTACTCCACTGCAACTTCAGGGA
*
4572669 GATTAGATTTGTAACTT
66 GATAAGATTTGTAACTT
4572686 CAATCTGCTC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (92 bp):
AACCCACTACAACTTCAAAGGCATAGGATTTGTCGCTTCAATCTACTCCACTGCAACTTCAGGGA
GATAAGATTTGTAACTTGATTTAATCC
Found at i:4572856 original size:89 final size:89
Alignment explanation
Indices: 4572517--4572989 Score: 431
Period size: 89 Copynumber: 5.3 Consensus size: 89
4572507 ATTCTAACCC
* * * *
4572517 ACTACAACTTCAAAG-GTATAGGATTTG-T-TGCTTCAATCTACTCCACTGTAACTTCAGGGAGA
1 ACTACAACTTCAGAGAG-ATAAGATTTGCTAT-CTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* ** *
4572579 TAAGATTTGTGACTTGATTTAATCCAAC-CC
64 TAAGATTTGT-A---GCTTTAAT-CTGCTCT
* * * ** *
4572609 ACTGCAACTTCAAAG-GCATAGGATTTG-TCGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
1 ACTACAACTTCAGAGAG-ATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * *
4572672 TAGATTTGTAACTTCAATCTGCTCC
65 AAGATTTGTAGCTTTAATCTGCTCT
* * * * * *
4572697 ATTATAACTTCAGGGAGATAAGATTTG-TAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATA
1 ACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
*
4572761 AGATTTGTAGCTTTAATCTACTCT
66 AGATTTGTAGCTTTAATCTGCTCT
* * * *
4572785 ACTACAACTTCAGAGAGATATGATTTGCTATTTTCAATTTGCTCCACTGCAACTTTAGGGAGATA
1 ACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* *
4572850 AGATTTGTGGCTTTAACCTGCTCT
66 AGATTTGTAGCTTTAATCTGCTCT
* ** * * * *
4572874 ACTGCAACTTCAGAGAGATAAGATTCACTATCTTCAATCTACTCTACTGTAACTTCAAGGAGATA
1 ACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* *
4572939 AGATTTGTGGCTTGAATCTGCTAC-
66 AGATTTGTAGCTTTAATCTGCT-CT
* *
4572963 ACTTCAACTTCAGGGAGATAAGATTTG
1 ACTACAACTTCAGAGAGATAAGATTTG
4572990 TCACGATAAC
Statistics
Matches: 318, Mismatches: 58, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
87 2 0.01
88 100 0.31
89 150 0.47
90 1 0.00
91 1 0.00
92 64 0.20
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (89 bp):
ACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
AGATTTGTAGCTTTAATCTGCTCT
Found at i:4572880 original size:133 final size:132
Alignment explanation
Indices: 4572521--4572990 Score: 437
Period size: 133 Copynumber: 3.5 Consensus size: 132
4572511 TAACCCACTA
* * ** * **
4572521 CAACTTCAAAG-GTATAGGATTTGTTGCTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGAT
1 CAACTTCAGAGAG-ATATGATTTGTAACTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGAT
* * ** * * * *
4572585 TTGTGACTTGATTTAATCCAAC-CCACTGCAACTTCAAAG-GCATAGGATTTGTCGCTTTAATCT
65 TTGTAAC----TTCAA-CCTGCTCTACTGCAACTTCAGAGAG-ATAAGATTTGTAGCTTTAATCT
* *
4572648 GCTCCACTG
124 ACTCTACTG
* * *
4572657 CAACTTCAGGGAGAT-TAGATTTGTAACTTCAATCTGCTCCATTATAACTTCAGGGAGATAAGAT
1 CAACTTCAGAGAGATAT-GATTTGTAACTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGAT
*
4572721 TTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTACTCTA
65 TTGTAACTTCAACCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTACTCTA
*
4572786 CTA
130 CTG
** * * *
4572789 CAACTTCAGAGAGATATGATTTGCTATTTTCAATTTGCTCCACTGCAACTTTAGGGAGATAAGAT
1 CAACTTCAGAGAGATATGATTTG-TAACTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGAT
** * ** * *
4572854 TTGTGGCTTTAACCTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTATCTTCAATCTACTCT
65 TTGTAACTTCAACCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TGTAGCTTTAATCTACTCT
4572919 ACTG
129 ACTG
* * ** * * *
4572923 TAACTTCA-AGGAGATAAGATTTGTGGCTTGAATCTGCTACACTTCAACTTCAGGGAGATAAGAT
1 CAACTTCAGA-GAGATATGATTTGTAACTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGAT
4572987 TTGT
65 TTGT
4572991 CACGATAACT
Statistics
Matches: 279, Mismatches: 47, Indels: 19
0.81 0.14 0.06
Matches are distributed among these distances:
131 2 0.01
132 65 0.23
133 115 0.41
134 37 0.13
136 59 0.21
137 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (132 bp):
CAACTTCAGAGAGATATGATTTGTAACTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATT
TGTAACTTCAACCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTACTCTAC
TG
Found at i:4585448 original size:18 final size:17
Alignment explanation
Indices: 4585425--4585462 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
4585415 AATCAAAATT
4585425 TATTTTATAATAATATAA
1 TATTTTATAATAAT-TAA
*
4585443 TATTTTGTAATAATTAA
1 TATTTTATAATAATTAA
4585460 TAT
1 TAT
4585463 CATATATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TATTTTATAATAATTAA
Found at i:4586708 original size:6 final size:6
Alignment explanation
Indices: 4586697--4586735 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
4586687 GGTATATGTG
* *
4586697 TATATC TATATC TATATC TATATA TATATA TATAT- TATA
1 TATATC TATATC TATATC TATATC TATATC TATATC TATA
4586736 AAATATGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (6 bp):
TATATC
Found at i:4586773 original size:25 final size:27
Alignment explanation
Indices: 4586723--4586783 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
4586713 TCTATATATA
4586723 TATATATATTATAAAATATGAAAAATG
1 TATATATATTATAAAATATGAAAAATG
* *
4586750 TATAAATATTATAAAA-AT-ATAAATG
1 TATATATATTATAAAATATGAAAAATG
4586775 TATATATAT
1 TATATATAT
4586784 AAAAACTAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 14 0.45
26 2 0.06
27 15 0.48
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (27 bp):
TATATATATTATAAAATATGAAAAATG
Found at i:4586911 original size:21 final size:22
Alignment explanation
Indices: 4586882--4586923 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
4586872 ATATATATGC
*
4586882 ATAAGTATAGTAATAATACTAT
1 ATAAGTATAATAATAATACTAT
4586904 ATAA-TATAATAATAATACTA
1 ATAAGTATAATAATAATACTA
4586924 CTACTACTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAAGTATAATAATAATACTAT
Found at i:4586925 original size:3 final size:3
Alignment explanation
Indices: 4586919--4586950 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
4586909 ATAATAATAA
4586919 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
4586951 ATAATAATAN
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:4587140 original size:41 final size:41
Alignment explanation
Indices: 4587060--4587416 Score: 383
Period size: 41 Copynumber: 8.6 Consensus size: 41
4587050 NNNNNNNNNN
* * * * ** *
4587060 GGCGCTTAGATACAAACGCCGCTGAATACAGGAGAATTAGC
1 GGCGCTTAGACAAAAACGCCGCTAAAGACCTGAGCATTAGC
* * * *
4587101 AGCGCATATATAAAAACGCCGCTAAAGACCTGAGCATTAGC
1 GGCGCTTAGACAAAAACGCCGCTAAAGACCTGAGCATTAGC
* * * * * * *
4587142 GGCGCATAGGCGAAAACGCCACTATAGACACAGAGCATTATC
1 GGCGCTTAGACAAAAACGCCGCTAAAGAC-CTGAGCATTAGC
* *
4587184 GGCGCTTAGACGAAAACGCCGCTAAAGACTCGGAGCATTAGC
1 GGCGCTTAGACAAAAACGCCGCTAAAGAC-CTGAGCATTAGC
* * * * *
4587226 GGCGCTTAGACGAAAGCACCACTAAAGACTCGGAGCATTAGC
1 GGCGCTTAGACAAAAACGCCGCTAAAGAC-CTGAGCATTAGC
* * * *
4587268 GGCGCTTATACGAAAACGCTGCTATAGA-CTCGAGCATTAGC
1 GGCGCTTAGACAAAAACGCCGCTAAAGACCT-GAGCATTAGC
* *
4587309 GGCGCTTAGACAAAAACGCCGCTATAGACCCGAGCATTAGC
1 GGCGCTTAGACAAAAACGCCGCTAAAGACCTGAGCATTAGC
*
4587350 GGCGCTTAGACAAAAACGCCGCTATAGACCTGAGCATTAGC
1 GGCGCTTAGACAAAAACGCCGCTAAAGACCTGAGCATTAGC
4587391 GGCGCTTAGACAAAAACGCCGCTAAA
1 GGCGCTTAGACAAAAACGCCGCTAAA
4587417 TGTTTAAAAA
Statistics
Matches: 272, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
40 1 0.00
41 164 0.60
42 107 0.39
ACGTcount: A:0.34, C:0.26, G:0.25, T:0.16
Consensus pattern (41 bp):
GGCGCTTAGACAAAAACGCCGCTAAAGACCTGAGCATTAGC
Found at i:4587198 original size:42 final size:41
Alignment explanation
Indices: 4587113--4587414 Score: 390
Period size: 41 Copynumber: 7.3 Consensus size: 41
4587103 CGCATATATA
* * * *
4587113 AAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCATAGGCG
1 AAAACGCCGCTATAGACCGGAGCATTAGCGGCGCTTAGACG
* * *
4587154 AAAACGCCACTATAGACACAGAGCATTATCGGCGCTTAGACG
1 AAAACGCCGCTATAGAC-CGGAGCATTAGCGGCGCTTAGACG
*
4587196 AAAACGCCGCTAAAGACTCGGAGCATTAGCGGCGCTTAGACG
1 AAAACGCCGCTATAGAC-CGGAGCATTAGCGGCGCTTAGACG
* * * * *
4587238 AAAGCACCACTAAAGACTCGGAGCATTAGCGGCGCTTATACG
1 AAAACGCCGCTATAGAC-CGGAGCATTAGCGGCGCTTAGACG
* *
4587280 AAAACGCTGCTATAGACTC-GAGCATTAGCGGCGCTTAGACA
1 AAAACGCCGCTATAGAC-CGGAGCATTAGCGGCGCTTAGACG
* *
4587321 AAAACGCCGCTATAGACCCGAGCATTAGCGGCGCTTAGACA
1 AAAACGCCGCTATAGACCGGAGCATTAGCGGCGCTTAGACG
* *
4587362 AAAACGCCGCTATAGACCTGAGCATTAGCGGCGCTTAGACA
1 AAAACGCCGCTATAGACCGGAGCATTAGCGGCGCTTAGACG
4587403 AAAACGCCGCTA
1 AAAACGCCGCTA
4587415 AATGTTTAAA
Statistics
Matches: 235, Mismatches: 24, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
40 1 0.00
41 125 0.53
42 109 0.46
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.16
Consensus pattern (41 bp):
AAAACGCCGCTATAGACCGGAGCATTAGCGGCGCTTAGACG
Found at i:4587414 original size:82 final size:83
Alignment explanation
Indices: 4587112--4587410 Score: 395
Period size: 84 Copynumber: 3.6 Consensus size: 83
4587102 GCGCATATAT
* * *
4587112 AAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCATAGGCGAAAACGCCACTATAGACACAGAG
1 AAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTAGACAAAAACGCCACTATAGACACAGAG
*
4587177 CATTATCGGCGCTTAGAC
66 CATTAGCGGCGCTTAGAC
* * * * * * * *
4587195 GAAAACGCCGCTAAAGACTCGGAGCATTAGCGGCGCTTAGACGAAAGCACCACTAAAGACTCGGA
1 AAAAACGCCGCTAAAGAC-CTGAGCATTAGCGGCGCTTAGACAAAAACGCCACTATAGACACAGA
*
4587260 GCATTAGCGGCGCTTATAC
65 GCATTAGCGGCGCTTAGAC
* * * * *
4587279 GAAAACGCTGCTATAGA-CTCGAGCATTAGCGGCGCTTAGACAAAAACGCCGCTATAGAC-CCGA
1 AAAAACGCCGCTAAAGACCT-GAGCATTAGCGGCGCTTAGACAAAAACGCCACTATAGACACAGA
4587342 GCATTAGCGGCGCTTAGAC
65 GCATTAGCGGCGCTTAGAC
*
4587361 AAAAACGCCGCTATAGACCTGAGCATTAGCGGCGCTTAGACAAAAACGCC
1 AAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTAGACAAAAACGCC
4587411 GCTAAATGTT
Statistics
Matches: 190, Mismatches: 23, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
82 67 0.35
83 53 0.28
84 70 0.37
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.15
Consensus pattern (83 bp):
AAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTAGACAAAAACGCCACTATAGACACAGAG
CATTAGCGGCGCTTAGAC
Found at i:4587588 original size:40 final size:39
Alignment explanation
Indices: 4587465--4587591 Score: 112
Period size: 40 Copynumber: 3.2 Consensus size: 39
4587455 GGTTTTTTGT
* * *
4587465 GGCGCTTTATATAAAACGCCGTTAATTC-CTATTTTTAGC
1 GGCGCTTTA-GTAAAACGCCGCTAATGCTCTATTTTTAGC
** * **
4587504 GGCGCTTCCGTATAAACGCCGCTGATGCTCTACCTTTAGC
1 GGCGCTTTAGTA-AAACGCCGCTAATGCTCTATTTTTAGC
* * * *
4587544 GGCGCTTTGGCTAAATCGCCGCTAATGCTCTATTTTTTGT
1 GGCGCTTTAG-TAAAACGCCGCTAATGCTCTATTTTTAGC
4587584 GGCGCTTT
1 GGCGCTTT
4587592 TGTTCCAAAC
Statistics
Matches: 69, Mismatches: 16, Indels: 5
0.77 0.18 0.06
Matches are distributed among these distances:
38 2 0.03
39 19 0.28
40 46 0.67
41 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.35
Consensus pattern (39 bp):
GGCGCTTTAGTAAAACGCCGCTAATGCTCTATTTTTAGC
Found at i:4595151 original size:14 final size:14
Alignment explanation
Indices: 4595111--4595145 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
4595101 TATCACATTT
4595111 TAAATAATTAT-CAA
1 TAAAT-ATTATACAA
4595125 TAAATATTATACAA
1 TAAATATTATACAA
4595139 TAAATAT
1 TAAATAT
4595146 AGTACACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (14 bp):
TAAATATTATACAA
Found at i:4595342 original size:20 final size:20
Alignment explanation
Indices: 4595317--4595358 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
4595307 CCTACATAAA
*
4595317 AAAACAA-ATAAAATTATGTT
1 AAAACAACAT-AAATTATCTT
4595337 AAAACAACATAAATTATCTT
1 AAAACAACATAAATTATCTT
4595357 AA
1 AA
4595359 CATAATAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAACAACATAAATTATCTT
Found at i:4596401 original size:125 final size:124
Alignment explanation
Indices: 4596126--4596568 Score: 616
Period size: 125 Copynumber: 3.5 Consensus size: 124
4596116 GATAAAATCA
* * * *
4596126 AAGCAGGATGCTTTATCAGAAGAACTTCTGAAATTGCACCCACATGGACGCGCTTTTGGTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
* *
4596191 AGGTCCTGAAAAAATAATTTCAAGTTGACGTTTCTGAGAAAATAGTATAAAAAATTGCTTC
66 AGGTCCTGAAAAAA-AATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAA-CGCTTC
* * * *
4596252 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACACGCTTTTCCCACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
*
4596317 AGGTCCTGAAAAAAAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACCGCTTC
66 AGGTCCTGAAAAAAAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAA-CGCTTC
* * * * * *
4596377 AAGTAGAATGCTTTATCAAAAGAATTTCTTAAATTGCACCCACGTGGACGCGTTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
* * *
4596442 AGGTCCTGAAAAGATAATTTTGAGTTGACATTTCTGAGAAAATAGTATAAAAAACGCTTC
66 AGGTCCTGAAAA-AAAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTTC
* * *** *
4596502 AAGCAGGATGCTTTATCAGAAGAATTTTTGAAATCGCGCCCTTATGGACGCGTTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
4596567 AG
66 AG
4596569 CATGTTTGGG
Statistics
Matches: 280, Mismatches: 36, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
125 172 0.61
126 108 0.39
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (124 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAAAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTTC
Found at i:4597043 original size:18 final size:18
Alignment explanation
Indices: 4597020--4597060 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
4597010 AATAGAAAAT
*
4597020 GGATACATAAAAGGGCTA
1 GGATACATAAAAGGGATA
4597038 GGATACATAAAAGGGATA
1 GGATACATAAAAGGGATA
4597056 GGATA
1 GGATA
4597061 AGCACCTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.46, C:0.07, G:0.29, T:0.17
Consensus pattern (18 bp):
GGATACATAAAAGGGATA
Found at i:4597719 original size:7 final size:7
Alignment explanation
Indices: 4597709--4597734 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
4597699 TTATATACAT
4597709 AATACTA
1 AATACTA
4597716 AATACTA
1 AATACTA
4597723 AATACTA
1 AATACTA
4597730 AATAC
1 AATAC
4597735 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:4598232 original size:23 final size:23
Alignment explanation
Indices: 4598202--4598246 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
4598192 GGCATCAGAT
4598202 TGTAACACCCCCTAACCCCAAAA
1 TGTAACACCCCCTAACCCCAAAA
4598225 TGTAACACCCCCTAACCCCAAA
1 TGTAACACCCCCTAACCCCAAA
4598247 CCGTCGCCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.44, G:0.04, T:0.13
Consensus pattern (23 bp):
TGTAACACCCCCTAACCCCAAAA
Found at i:4599319 original size:51 final size:51
Alignment explanation
Indices: 4599258--4599355 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
4599248 AATTAATTAA
4599258 AAATAGGGATTTAAGAGAAATTTAAG-AAGAAATTGAGAGCAAATTGAAATT
1 AAATAGGGATTTAAGAGAAATTT-AGCAAGAAATTGAGAGCAAATTGAAATT
* * * *
4599309 AAATATGGATTTGAGAGAAATTTGGCAGGAAATTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGCAAGAAATTGAGAGCAAATTGA
4599356 GAGGAAATTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 1 0.02
51 41 0.98
ACGTcount: A:0.47, C:0.03, G:0.24, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGCAAGAAATTGAGAGCAAATTGAAATT
Found at i:4599344 original size:22 final size:22
Alignment explanation
Indices: 4599319--4599381 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 22
4599309 AAATATGGAT
4599319 TTGAGAGAAATTTG-GCAGGAAA
1 TTGAGAGAAATTTGAG-AGGAAA
4599341 TTGAGAGCAAA-TTGAGAGGAAA
1 TTGAGAG-AAATTTGAGAGGAAA
4599363 TTGAGA-AAATAATTGAGAG
1 TTGAGAGAAAT--TTGAGAG
4599382 AGGATTAGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
20 3 0.08
22 22 0.61
23 11 0.31
ACGTcount: A:0.44, C:0.03, G:0.30, T:0.22
Consensus pattern (22 bp):
TTGAGAGAAATTTGAGAGGAAA
Found at i:4599919 original size:5 final size:5
Alignment explanation
Indices: 4599892--4599963 Score: 53
Period size: 5 Copynumber: 14.4 Consensus size: 5
4599882 TTTTTTTCCC
* * *
4599892 CTTCT CATTCT CTTCT -TTC- CTTCT CTTCT ATTCT -TT-T TTTCC CATTTCT
1 CTTCT C-TTCT CTTCT CTTCT CTTCT CTTCT CTTCT CTTCT CTTCT C--TTCT
4599941 CCTTCT CTTCT CTTCT CTTCT CT
1 -CTTCT CTTCT CTTCT CTTCT CT
4599964 ATTCTACTAC
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
3 1 0.02
4 10 0.18
5 31 0.56
6 9 0.16
7 3 0.05
8 1 0.02
ACGTcount: A:0.04, C:0.36, G:0.00, T:0.60
Consensus pattern (5 bp):
CTTCT
Found at i:4599965 original size:43 final size:42
Alignment explanation
Indices: 4599866--4599968 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 42
4599856 TTCTTTTTTC
* *
4599866 CTTCTCTTATCTTTTCTTTTTTTCCCCTTCTCATTCTCTTCT
1 CTTCTCTTCTCTATTCTTTTTTTCCCCTTCTCATTCTCTTCT
* *
4599908 -TTC-CTTCTCTTCTATTCTTTTTTTCCCATTTCTCCTTCTCTTCT
1 CTTCTC-T-TC-TCTATTCTTTTTTTCCC-CTTCTCATTCTCTTCT
4599952 CTTCTCTTCTCTATTCT
1 CTTCTCTTCTCTATTCT
4599969 ACTACTATCT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
40 1 0.02
41 4 0.08
42 1 0.02
43 24 0.47
44 16 0.31
45 4 0.08
46 1 0.02
ACGTcount: A:0.05, C:0.34, G:0.00, T:0.61
Consensus pattern (42 bp):
CTTCTCTTCTCTATTCTTTTTTTCCCCTTCTCATTCTCTTCT
Found at i:4601813 original size:21 final size:21
Alignment explanation
Indices: 4601787--4601866 Score: 92
Period size: 21 Copynumber: 3.8 Consensus size: 21
4601777 TTTGCTTTTT
*
4601787 TTTTAAATCGATTGTTTATTG
1 TTTTAAATCGATTCTTTATTG
4601808 TTTTAAATCGATTCTTT-TCT-
1 TTTTAAATCGATTCTTTAT-TG
* *
4601828 TCTTTGAATCGATTTTTTATTG
1 T-TTTAAATCGATTCTTTATTG
*
4601850 TTTTAAATAGATTCTTT
1 TTTTAAATCGATTCTTT
4601867 GCTTCTTTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
20 2 0.04
21 45 0.92
22 2 0.04
ACGTcount: A:0.23, C:0.09, G:0.10, T:0.59
Consensus pattern (21 bp):
TTTTAAATCGATTCTTTATTG
Found at i:4601840 original size:42 final size:42
Alignment explanation
Indices: 4601792--4601993 Score: 194
Period size: 42 Copynumber: 4.7 Consensus size: 42
4601782 TTTTTTTTTA
*
4601792 AATCGATTGTTTATTGTTTTAAATCGATTCTTTTCTTCTTTG
1 AATCGATTTTTTATTGTTTTAAATCGATTCTTTTCTTCTTTG
* *
4601834 AATCGATTTTTTATTGTTTTAAATAGATTCTTTGCTTCTTTG
1 AATCGATTTTTTATTGTTTTAAATCGATTCTTTTCTTCTTTG
* * *
4601876 AATCGATTCATTATTCTTTTTTTAAATCGATTGTTTGT-TTCTTTG
1 AATCGATT--TT-TTATTGTTTTAAATCGATTCTTT-TCTTCTTTG
* * *
4601921 AATCAATTAATTATTGTTGTTTTAAA-CGATTCTTTACTTCTTTG
1 AATCGATT--TT-TTATTGTTTTAAATCGATTCTTTTCTTCTTTG
** * * *
4601965 AATTTATTCTTTGTTG-TTTAACTCGATTC
1 AATCGATTTTTTATTGTTTTAAATCGATTC
4601994 AAACTCTAAT
Statistics
Matches: 136, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
40 5 0.04
41 12 0.09
42 48 0.35
44 23 0.17
45 48 0.35
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (42 bp):
AATCGATTTTTTATTGTTTTAAATCGATTCTTTTCTTCTTTG
Found at i:4601901 original size:45 final size:44
Alignment explanation
Indices: 4601802--4601967 Score: 212
Period size: 45 Copynumber: 3.8 Consensus size: 44
4601792 AATCGATTGT
*
4601802 TTATTGTTTTAAATCGATTCTTTTCTTCTTTGAATCGATT-TT-
1 TTATTGTTTTAAATCGATTCTTTGCTTCTTTGAATCGATTATTA
*
4601844 TTATTGTTTTAAATAGATTCTTTGCTTCTTTGAATCGATTCATTA
1 TTATTGTTTTAAATCGATTCTTTGCTTCTTTGAATCGATT-ATTA
* * * * *
4601889 TTCTTTTTTTAAATCGATTGTTTGTTTCTTTGAATCAATTAATTA
1 TTATTGTTTTAAATCGATTCTTTGCTTCTTTGAATCGATT-ATTA
* *
4601934 TTGTTGTTTTAAA-CGATTCTTTACTTCTTTGAAT
1 TTATTGTTTTAAATCGATTCTTTGCTTCTTTGAAT
4601968 TTATTCTTTG
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
42 38 0.36
44 20 0.19
45 49 0.46
ACGTcount: A:0.22, C:0.11, G:0.10, T:0.57
Consensus pattern (44 bp):
TTATTGTTTTAAATCGATTCTTTGCTTCTTTGAATCGATTATTA
Found at i:4606080 original size:18 final size:18
Alignment explanation
Indices: 4606057--4606123 Score: 53
Period size: 18 Copynumber: 3.7 Consensus size: 18
4606047 TTATATGTCC
*
4606057 TAATATTATATTTTAAAT
1 TAATATTATAATTTAAAT
* *** **
4606075 TAATATTTTCCCTTATTT
1 TAATATTATAATTTAAAT
4606093 TTAATATTATAATTTAAAT
1 -TAATATTATAATTTAAAT
*
4606112 TAATATTTTAAT
1 TAATATTATAAT
4606124 AAATATATTT
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
18 23 0.66
19 12 0.34
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (18 bp):
TAATATTATAATTTAAAT
Found at i:4606082 original size:13 final size:13
Alignment explanation
Indices: 4606064--4606139 Score: 54
Period size: 13 Copynumber: 6.1 Consensus size: 13
4606054 TCCTAATATT
4606064 ATATTTTAAATTA
1 ATATTTTAAATTA
***
4606077 ATATTTTCCCTT-
1 ATATTTTAAATTA
4606089 AT-TTTTAATATT-
1 ATATTTTAA-ATTA
*
4606101 ATAATTTAAATTA
1 ATATTTTAAATTA
*
4606114 ATATTTT-AATAA
1 ATATTTTAAATTA
4606126 ATATATTT-AATTA
1 ATAT-TTTAAATTA
4606139 A
1 A
4606140 AATAATCTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
11 4 0.08
12 17 0.35
13 28 0.57
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATTTTAAATTA
Found at i:4606133 original size:26 final size:25
Alignment explanation
Indices: 4606091--4606139 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
4606081 TTTCCCTTAT
*
4606091 TTTTAATATTATAATTTAAATTAATA
1 TTTTAATAATATAATTT-AATTAATA
4606117 TTTTAATAA-ATATATTTAATTAA
1 TTTTAATAATATA-ATTTAATTAA
4606140 AATAATCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TTTTAATAATATAATTTAATTAATA
Found at i:4606140 original size:14 final size:13
Alignment explanation
Indices: 4606104--4606162 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 13
4606094 TAATATTATA
*
4606104 ATTTAAATTAATAT
1 ATTT-AATTAAAAT
4606118 -TTTAA-TAAATAT
1 ATTTAATTAAA-AT
4606130 ATTTAATTAAAAT
1 ATTTAATTAAAAT
*
4606143 AATCTAATTAAAAT
1 -ATTTAATTAAAAT
4606157 -TTTAAT
1 ATTTAAT
4606163 GATATTTTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
11 3 0.08
12 9 0.24
13 10 0.26
14 16 0.42
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTTAATTAAAAT
Found at i:4606322 original size:22 final size:20
Alignment explanation
Indices: 4606280--4606326 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
4606270 TTATTTAATT
4606280 ATAAGAAAAATAATAAAATA
1 ATAAGAAAAATAATAAAATA
4606300 ATAATGAAAAGATAA-AAAGATA
1 ATAA-GAAAA-ATAATAAA-ATA
4606322 A-AAGA
1 ATAAGA
4606327 TCAATATAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 6 0.25
21 10 0.42
22 8 0.33
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (20 bp):
ATAAGAAAAATAATAAAATA
Found at i:4608541 original size:31 final size:30
Alignment explanation
Indices: 4608468--4608542 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 30
4608458 CTGAGATTTC
* *
4608468 CCGACAATGATGACTTGCCAACTCGGATTG
1 CCGACAATGATGACTTACCAACCCGGATTG
** * *
4608498 CCTGACGGTGATGGCTTACCATCCCGGATTGG
1 CC-GACAATGATGACTTACCAACCCGGATT-G
4608530 CCGACAATGATGA
1 CCGACAATGATGA
4608543 TTTATCAAGT
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
30 2 0.06
31 29 0.85
32 3 0.09
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (30 bp):
CCGACAATGATGACTTACCAACCCGGATTG
Found at i:4608892 original size:26 final size:27
Alignment explanation
Indices: 4608851--4608901 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
4608841 CAAACAGATC
*
4608851 CCAAATACCCACTTAACCTAGCCCAAA
1 CCAAATACCCAATTAACCTAGCCCAAA
4608878 CCAAA-ACCCAATTAACCTAGCCCA
1 CCAAATACCCAATTAACCTAGCCCA
4608902 GCTAATGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.41, C:0.41, G:0.04, T:0.14
Consensus pattern (27 bp):
CCAAATACCCAATTAACCTAGCCCAAA
Found at i:4610350 original size:14 final size:14
Alignment explanation
Indices: 4610331--4610357 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4610321 ATATGGATAT
4610331 ACTATTTTTATTAA
1 ACTATTTTTATTAA
4610345 ACTATTTTTATTA
1 ACTATTTTTATTA
4610358 TACATATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
ACTATTTTTATTAA
Found at i:4610546 original size:18 final size:17
Alignment explanation
Indices: 4610525--4610558 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
4610515 AGCTTATTAT
4610525 CTTATGTGTATTGTATTG
1 CTTATGTGTATT-TATTG
*
4610543 CTTATTTGTATTTATT
1 CTTATGTGTATTTATT
4610559 AATTATTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.18, C:0.06, G:0.15, T:0.62
Consensus pattern (17 bp):
CTTATGTGTATTTATTG
Found at i:4611701 original size:15 final size:15
Alignment explanation
Indices: 4611681--4611712 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
4611671 AAAATAATTA
4611681 TTAGTTTTATTATTT
1 TTAGTTTTATTATTT
4611696 TTAGTTTTATTATTT
1 TTAGTTTTATTATTT
4611711 TT
1 TT
4611713 GGTTACTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (15 bp):
TTAGTTTTATTATTT
Found at i:4616120 original size:16 final size:16
Alignment explanation
Indices: 4616099--4616134 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4616089 TGTTTAAGAA
*
4616099 ATTATTATTATATTAC
1 ATTATTATAATATTAC
*
4616115 ATTATTATAATATTAT
1 ATTATTATAATATTAC
4616131 ATTA
1 ATTA
4616135 ACTAAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTATTATAATATTAC
Found at i:4618359 original size:9 final size:9
Alignment explanation
Indices: 4618307--4618359 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
4618297 AATTCTTTTT
*
4618307 AAAAATTTA
1 AAAAATTAA
* *
4618316 GAAAATTAT
1 AAAAATTAA
4618325 AAAAATTAAA
1 AAAAATT-AA
*
4618335 ATAAAAGTAA
1 A-AAAATTAA
4618345 AAAAATTAA
1 AAAAATTAA
4618354 AAAAAT
1 AAAAAT
4618360 AGATAAAGTG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
9 25 0.71
10 5 0.14
11 5 0.14
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (9 bp):
AAAAATTAA
Found at i:4622046 original size:25 final size:25
Alignment explanation
Indices: 4622000--4622047 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
4621990 TTGAGTTGAA
**
4622000 TATCGGTAAACTCATACTAGCTGAG
1 TATCGGTAAACTCATAAGAGCTGAG
*
4622025 TATCGGTAAGCTCATAAGAGCTG
1 TATCGGTAAACTCATAAGAGCTG
4622048 GAATTGGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
TATCGGTAAACTCATAAGAGCTGAG
Found at i:4627855 original size:19 final size:21
Alignment explanation
Indices: 4627817--4627857 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
4627807 TGAAATTCCA
*
4627817 AAATTAAAAAGTACAAGGATT
1 AAATTAAAAAGTAAAAGGATT
4627838 AAATT-AAAA-TAAAAGGATT
1 AAATTAAAAAGTAAAAGGATT
4627857 A
1 A
4627858 TATCCATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 4 0.21
21 5 0.26
ACGTcount: A:0.61, C:0.02, G:0.12, T:0.24
Consensus pattern (21 bp):
AAATTAAAAAGTAAAAGGATT
Found at i:4634090 original size:104 final size:104
Alignment explanation
Indices: 4633917--4634110 Score: 275
Period size: 104 Copynumber: 1.9 Consensus size: 104
4633907 GTCTTTTGAA
* * * *
4633917 GGTGTATGGGCTCTCCCAAGAATAAAGCCGTAAGGGCCATGTGAGCCCAAAGCGGACAATATCTT
1 GGTGTATGGGCGCTCCCAAGAACAAAACCGTAAGGGCCATGTGAGCCCAAAGCAGACAATATCTT
*
4633982 ATCGGGCTGGGTGTTGACTATGACAAGATGTTTTTTGGG
66 ATCGGGCTGGGTATTGACTATGACAAGATGTTTTTTGGG
* * *
4634021 GGTGTATGGGCGCTCCCAAGAACAAAACCGTGAA-GGCCATGTGCA-TCCAAAGTAGATAATATC
1 GGTGTATGGGCGCTCCCAAGAACAAAACCGT-AAGGGCCATGTG-AGCCCAAAGCAGACAATATC
*
4634084 TTATCGGGCTGGGTATTGGCTATGACA
64 TTATCGGGCTGGGTATTGACTATGACA
4634111 TCAAGGACTA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
104 76 0.96
105 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (104 bp):
GGTGTATGGGCGCTCCCAAGAACAAAACCGTAAGGGCCATGTGAGCCCAAAGCAGACAATATCTT
ATCGGGCTGGGTATTGACTATGACAAGATGTTTTTTGGG
Found at i:4653718 original size:11 final size:11
Alignment explanation
Indices: 4653702--4653739 Score: 53
Period size: 10 Copynumber: 3.6 Consensus size: 11
4653692 TTTATATTTT
4653702 TAAAAAATATA
1 TAAAAAATATA
*
4653713 T-AAAAAT-TC
1 TAAAAAATATA
4653722 TAAAAAATATA
1 TAAAAAATATA
4653733 TAAAAAA
1 TAAAAAA
4653740 AGGTTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.09
10 12 0.52
11 9 0.39
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (11 bp):
TAAAAAATATA
Found at i:4656019 original size:20 final size:20
Alignment explanation
Indices: 4655985--4656026 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
4655975 AACTATTTAA
** *
4655985 ATAATATTATTTAAATAGTT
1 ATAATATTAAATAAATAATT
4656005 ATAATATTAAATAAATAATT
1 ATAATATTAAATAAATAATT
4656025 AT
1 AT
4656027 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATAAATAATT
Found at i:4667986 original size:71 final size:71
Alignment explanation
Indices: 4667894--4668066 Score: 188
Period size: 71 Copynumber: 2.4 Consensus size: 71
4667884 TAAACAAACC
* * ** *
4667894 TTAGCTTCGATGTTGGCTGGTCTTGAGACAAATGGACTTTTATCTTGAGACAGGGGCA-C-TTGA
1 TTAGCTTCGATGTTGGTTGGTCTCGAGACAAATGGACTTTTATCTCAAGACA-AGGCACCTTTGA
4667957 AGCAATAT
65 AGCAAT-T
* * * * *
4667965 TTAGCTTCGATGTTGGTTGGTCCCGTGACAAATGGGCTTTTGTCTCAAGATAAGGCACCTTTGAA
1 TTAGCTTCGATGTTGGTTGGTCTCGAGACAAATGGACTTTTATCTCAAGACAAGGCACCTTTGAA
*
4668030 GTAATT
66 GCAATT
* * *
4668036 TTAGCTTTGATATTGGTTTGTCTCGAGACAA
1 TTAGCTTCGATGTTGGTTGGTCTCGAGACAA
4668067 GGCCTGTGTC
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
70 4 0.05
71 71 0.85
72 9 0.11
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (71 bp):
TTAGCTTCGATGTTGGTTGGTCTCGAGACAAATGGACTTTTATCTCAAGACAAGGCACCTTTGAA
GCAATT
Found at i:4668078 original size:19 final size:19
Alignment explanation
Indices: 4668054--4668105 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
4668044 GATATTGGTT
4668054 TGTCTCGAGACAAGGCCTG
1 TGTCTCGAGACAAGGCCTG
4668073 TGTCTCGAGACAAGGCCTG
1 TGTCTCGAGACAAGGCCTG
*
4668092 TGTCTCAAGACAAG
1 TGTCTCGAGACAAG
4668106 ACTCAAATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (19 bp):
TGTCTCGAGACAAGGCCTG
Found at i:4668845 original size:19 final size:19
Alignment explanation
Indices: 4668823--4668952 Score: 64
Period size: 19 Copynumber: 6.7 Consensus size: 19
4668813 ATGCACCTCC
4668823 TGTGCTAGGATGCACTTTG
1 TGTGCTAGGATGCACTTTG
* ** **
4668842 TGTGCCAATATGTGCTTTG
1 TGTGCTAGGATGCACTTTG
** * * *
4668861 TGCCCCAGGAATGCATTTTT
1 TGTGCTAGG-ATGCACTTTG
*
4668881 TGTGCTAGGATGCACTTCG
1 TGTGCTAGGATGCACTTTG
* * * **
4668900 TGTACCAGTATGTGCTTTG
1 TGTGCTAGGATGCACTTTG
4668919 TGTGCTAGGGATGCA-TTTCG
1 TGTGCTA-GGATGCACTTT-G
* *
4668939 TCTGCTAGTATGCA
1 TGTGCTAGGATGCA
4668953 TTATACGTGC
Statistics
Matches: 76, Mismatches: 32, Indels: 6
0.67 0.28 0.05
Matches are distributed among these distances:
19 53 0.70
20 23 0.30
ACGTcount: A:0.17, C:0.18, G:0.28, T:0.37
Consensus pattern (19 bp):
TGTGCTAGGATGCACTTTG
Found at i:4668945 original size:58 final size:58
Alignment explanation
Indices: 4668825--4668952 Score: 157
Period size: 58 Copynumber: 2.2 Consensus size: 58
4668815 GCACCTCCTG
* * ** *
4668825 TGCTAGGATGCACTTTGTGTGCCAATATGTGCTTTGTGCCCCAGGAATGCATTTTTTG
1 TGCTAGGATGCACTTCGTGTACCAATATGTGCTTTGTGCCCCAGGAATGCATTTCGTC
* ** * *
4668883 TGCTAGGATGCACTTCGTGTACCAGTATGTGCTTTGTGTGCTAGGGATGCATTTCGTC
1 TGCTAGGATGCACTTCGTGTACCAATATGTGCTTTGTGCCCCAGGAATGCATTTCGTC
*
4668941 TGCTAGTATGCA
1 TGCTAGGATGCA
4668953 TTATACGTGC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.37
Consensus pattern (58 bp):
TGCTAGGATGCACTTCGTGTACCAATATGTGCTTTGTGCCCCAGGAATGCATTTCGTC
Found at i:4673681 original size:16 final size:17
Alignment explanation
Indices: 4673654--4673689 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
4673644 TTATAATTGG
4673654 ATTGAGAAAATTATTTA
1 ATTGAGAAAATTATTTA
4673671 ATTGA-AAAATTATTTA
1 ATTGAGAAAATTATTTA
4673687 ATT
1 ATT
4673690 TAAATAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.44
Consensus pattern (17 bp):
ATTGAGAAAATTATTTA
Found at i:4680575 original size:31 final size:29
Alignment explanation
Indices: 4680537--4680611 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
4680527 AACGGCTCAA
*
4680537 TGACTAAAATGTTACAACACGATAACATAAG
1 TGACTAAAATGTAACAACAC-A-AACATAAG
* ***
4680568 TGACTAAAACGTAACATTTCAAACATAAG
1 TGACTAAAATGTAACAACACAAACATAAG
4680597 TGACTAAAATGTAAC
1 TGACTAAAATGTAAC
4680612 CTAAGGTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 22 0.58
30 1 0.03
31 15 0.39
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (29 bp):
TGACTAAAATGTAACAACACAAACATAAG
Found at i:4683261 original size:18 final size:18
Alignment explanation
Indices: 4683238--4683277 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
4683228 AATTTGAAAC
4683238 TTTTCTACTAAGGTTTAA
1 TTTTCTACTAAGGTTTAA
**
4683256 TTTTCTACTATTGTTTAA
1 TTTTCTACTAAGGTTTAA
4683274 TTTT
1 TTTT
4683278 ATAAATAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.10, G:0.07, T:0.60
Consensus pattern (18 bp):
TTTTCTACTAAGGTTTAA
Found at i:4686152 original size:37 final size:37
Alignment explanation
Indices: 4686111--4686186 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
4686101 TGCAAATTAG
*
4686111 TCCTCCATTTTGTTTTAATTGCATTTCTTCTTCTTCT
1 TCCTCCATTTTGTTTTAAATGCATTTCTTCTTCTTCT
4686148 TCCTCCATTTTGTTTTAAATGCATTTCTTCTTCTTCT
1 TCCTCCATTTTGTTTTAAATGCATTTCTTCTTCTTCT
4686185 TC
1 TC
4686187 TTCTTCTTCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.12, C:0.25, G:0.05, T:0.58
Consensus pattern (37 bp):
TCCTCCATTTTGTTTTAAATGCATTTCTTCTTCTTCT
Found at i:4686180 original size:3 final size:3
Alignment explanation
Indices: 4686172--4686209 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
4686162 TTAAATGCAT
4686172 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
4686210 TGCAATTCGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:4686251 original size:3 final size:3
Alignment explanation
Indices: 4686238--4686305 Score: 91
Period size: 3 Copynumber: 22.3 Consensus size: 3
4686228 AAATAAATTG
* * *
4686238 TTA TCA TTA TTA TTA TTTA TTG TTA TTA TTA TTA TTA TGA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
4686284 TTA CTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
4686306 ATTCATATGC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
3 53 0.95
4 3 0.05
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:4692803 original size:88 final size:88
Alignment explanation
Indices: 4692654--4693515 Score: 824
Period size: 88 Copynumber: 9.8 Consensus size: 88
4692644 AGCAGATCAG
* * *
4692654 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACCGCGAAGCAGATCGAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
4692719 CCCTGGGTTGCAGCGTAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * *
4692742 TAAAAATAACAGATCTTGTCTTCCTACGCCGACAGCGAAGCGGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
4692807 CCCTGGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* ** * ** * * * *
4692830 TAAAAATAGCAGATCTTGCC-TCTCTGGGTTG-CAGC-AGAGCAGGTTAAAAATAGCAGATCTTG
1 TAAAAATAGCAGATCTTGCCTTC-CTGCGCCGACAGCGA-AGCAGATCGAAGACACCAG-CCTTG
* * ** ** * *
4692892 CCT-TCAGATCTTGCCTTCCTG-GCAGAT
63 CCTCCCTG-GGTTG-C-AGCGGAGCAGGT
******* * * * * * ** * * ** * * * *
4692919 CGCCTGCACCAG-CCTCGCCTCCCTGGGTTG-CAGCGGAGCAGGTTAAAAATAGCAGATCTTGCC
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAG-CCTTGCC
* *
4692982 TCTCTGGGTTGCAGCAGAGCAGGT
65 TCCCTGGGTTGCAGCGGAGCAGGT
* *
4693006 TAAAAATAGCAGATCTTGCCTTCCTACGCCGACAGCGAAGCAGATCGAAGACATCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * *
4693071 TCCTAGGTTGTAGCGGAGTAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * * *
4693094 TAAAAATAGCAGATCTTGCCTTCCTACGCCGACAGTGAAGCGGATTGAAGACACCAACCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
4693159 CCCTAGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
*** * *
4693182 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAATTAAGCAGATCAAAGACATCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
** *
4693247 CATTGGGTTACAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * *
4693270 TAAAAATAGCAGATCTTGCCTTCTTGCGCCGATAGCGAAGCAGATCGAAGACATCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* **
4693335 CCCTAGGTTGTC-GTAGAGCAGGT
66 CCCTGGGTTG-CAGCGGAGCAGGT
* *
4693358 TAAAAATAGCAGATCTTGCCTTCCTGCGCCAACAGTGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
4693423 CCCGGGGTTGCAACGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * *
4693446 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGGT-GAAAGACATCAACCTTGTC
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCG-AAGACACCAGCCTTGCC
4693510 TCCCTG
65 TCCCTG
4693516 AGCAGCAGTG
Statistics
Matches: 632, Mismatches: 127, Indels: 30
0.80 0.16 0.04
Matches are distributed among these distances:
86 3 0.00
87 32 0.05
88 562 0.89
89 33 0.05
90 2 0.00
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (88 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTGGGTTGCAGCGGAGCAGGT
Found at i:4692901 original size:13 final size:13
Alignment explanation
Indices: 4692883--4692909 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4692873 TTAAAAATAG
4692883 CAGATCTTGCCTT
1 CAGATCTTGCCTT
4692896 CAGATCTTGCCTT
1 CAGATCTTGCCTT
4692909 C
1 C
4692910 CTGGCAGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.15, T:0.37
Consensus pattern (13 bp):
CAGATCTTGCCTT
Found at i:4692920 original size:132 final size:130
Alignment explanation
Indices: 4692712--4693114 Score: 526
Period size: 132 Copynumber: 3.1 Consensus size: 130
4692702 AGACACTAGC
* * * **
4692712 CTTGCCTCCCTGGGTTGCAGC-GTAGCAGGTTAAAAATAACAGATCTTGTCTTCCTACGCCGACA
1 CTTGCCTCTCTGGGTTGCAGCAG-AGCAGGTTAAAAATAGCAGATCTTGCCTTCAGACGCCGACA
*
4692776 GCGAAGCGGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCA
65 -CG-AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCA
4692841 GAT
128 GAT
**
4692844 CTTGCCTCTCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCAGATCTTGCCTT
1 CTTGCCTCTCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCAGA-C--GCCGA
** *
4692909 C-CTG-GCAGATCGCCTG-CACCAGCCTCGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAG
63 CAC-GAGCAGATCG-AAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAG
4692971 CAGAT
126 CAGAT
**
4692976 CTTGCCTCTCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTACGCCGACAG
1 CTTGCCTCTCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCAGACGCCGACA-
* * * * *
4693041 CGAAGCAGATCGAAGACATCAGCCTTGCCTTCCTAGGTTGTAGCGGAGTAGGTTAAAAATAGCAG
65 CG-AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAG
4693106 AT
129 AT
4693108 CTTGCCT
1 CTTGCCT
4693115 TCCTACGCCG
Statistics
Matches: 237, Mismatches: 23, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
129 4 0.02
130 1 0.00
131 3 0.01
132 220 0.93
133 4 0.02
134 1 0.00
135 4 0.02
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (130 bp):
CTTGCCTCTCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGATCTTGCCTTCAGACGCCGACAC
GAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
Found at i:4693246 original size:220 final size:219
Alignment explanation
Indices: 4692654--4693247 Score: 547
Period size: 220 Copynumber: 2.7 Consensus size: 219
4692644 AGCAGATCAG
* * * *
4692654 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACCGCGAAGCAGATCGAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTACGCCGA-CGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * * * * *
4692719 CCCTGGGTTGCAGCGTAGCAGGTTAAAAATAACAGATCTTGTCTTCCTACGCCGACAGCGAAGCG
65 CCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAACCAAGCA
* ** ** * * * * *
4692784 GATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGC
130 GATCAAAGACACCAGCCTTGCCTCCCTACGCCGCAGCGAAGCAGATCAAAAACAGCAGACCTTGC
*
4692849 CTCTCTGGGTTGCAGCAGAGCAGGT
195 CTCTCTAGGTTGCAGCAGAGCAGGT
** ** * ** *
4692874 TAAAAATAGCAGATCTTGCCTTCAGATCTTGCCTTCCTG--GCAGATCGCCTG-CACCAGCCTCG
1 TAAAAATAGCAGATCTTGCCTTCCTA-C--GCCGACGTGAAGCAGATCG-AAGACACCAGCCTTG
* ** *
4692936 CCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCC-TCTCTGGGTTG-C-AGCA
62 CCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTC-CTGCGCCGACAACCA
* * * * * * * * * *
4692998 GAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTACGCCGACAGCGAAGCAGATCGAAGACATCAG
126 -AGCAGATCAAAGACACCAG-CCTTGCCTCCCTACGCCG-CAGCGAAGCAGATCAAAAACAGCAG
* * *
4693063 -CCTTGCCT-TCCTAGGTTGTAGCGGAGTAGGT
188 ACCTTGCCTCT-CTAGGTTGCAGCAGAGCAGGT
* * *
4693094 TAAAAATAGCAGATCTTGCCTTCCTACGCCGACAGTGAAGCGGATTGAAGACACCAACCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTACGCCGAC-GTGAAGCAGATCGAAGACACCAGCCTTGCCT
* **
4693159 CCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAATTAAGCA
65 CCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAACCAAGCA
*
4693224 GATCAAAGACATCAGCCTTGCCTC
130 GATCAAAGACACCAGCCTTGCCTC
4693248 ATTGGGTTAC
Statistics
Matches: 287, Mismatches: 71, Indels: 32
0.74 0.18 0.08
Matches are distributed among these distances:
217 4 0.01
218 3 0.01
219 18 0.06
220 219 0.76
221 37 0.13
222 4 0.01
223 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (219 bp):
TAAAAATAGCAGATCTTGCCTTCCTACGCCGACGTGAAGCAGATCGAAGACACCAGCCTTGCCTC
CCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAACCAAGCAG
ATCAAAGACACCAGCCTTGCCTCCCTACGCCGCAGCGAAGCAGATCAAAAACAGCAGACCTTGCC
TCTCTAGGTTGCAGCAGAGCAGGT
Found at i:4693589 original size:43 final size:43
Alignment explanation
Indices: 4693541--4693681 Score: 158
Period size: 43 Copynumber: 3.3 Consensus size: 43
4693531 GGTTACAGAT
4693541 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGC
* * * * * * ** *
4693584 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT-TACAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGTCCCCAG-C
* *
4693628 ATTATCTCCCCAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGC
4693671 CTTATCTCCCT
1 CTTATCTCCCT
4693682 GGTCAGCAGT
Statistics
Matches: 73, Mismatches: 22, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
43 42 0.58
44 31 0.42
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (43 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGC
Found at i:4693592 original size:80 final size:80
Alignment explanation
Indices: 4693503--4693701 Score: 283
Period size: 87 Copynumber: 2.4 Consensus size: 80
4693493 AAGACATCAA
* * *
4693503 CCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
1 CCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTACAGATATTATCTCCCCAAGCAGTAGTGGAGCA
4693568 GATCGAAGTCCCCAG
66 GATCGAAGTCCCCAG
4693583 CCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATATTATCTCCCCAAGCAGTAG
1 CCTTATCTCCCTGAGCAGCAGTGGAGTA-G--G----TTACAGATATTATCTCCCCAAGCAGTAG
4693648 TGGAGCAGATCGAAGTCCCCAG
59 TGGAGCAGATCGAAGTCCCCAG
*
4693670 CCTTATCTCCCTG-GTCAGCAGTGGAATAGGTT
1 CCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTT
4693702 GAAGATTGTG
Statistics
Matches: 107, Mismatches: 4, Indels: 16
0.84 0.03 0.13
Matches are distributed among these distances:
80 29 0.27
81 1 0.01
83 1 0.01
84 1 0.01
86 2 0.02
87 73 0.68
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (80 bp):
CCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTACAGATATTATCTCCCCAAGCAGTAGTGGAGCA
GATCGAAGTCCCCAG
Found at i:4693723 original size:44 final size:44
Alignment explanation
Indices: 4693673--4693759 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
4693663 TCCCCAGCCT
*
4693673 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCC
*
4693717 TATCTCCCTGGTCAGCTGTGGAATAGGTTGAAGATTGAGAATC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATC
4693760 TTACCTCTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCC
Found at i:4693738 original size:87 final size:87
Alignment explanation
Indices: 4693533--4693704 Score: 301
Period size: 87 Copynumber: 2.0 Consensus size: 87
4693523 GTGGAGTAGG
* *
4693533 TTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGCCTTATCTCCCTGAG
1 TTACAGATATTATCTCCCCAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGCCTTATCTCCCTGAG
*
4693598 CAGCAGTGGAGTAGGTTGAAAA
66 CAGCAGTGGAATAGGTTGAAAA
4693620 TTACAGATATTATCTCCCCAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGCCTTATCTCCCTG-G
1 TTACAGATATTATCTCCCCAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGCCTTATCTCCCTGAG
4693684 TCAGCAGTGGAATAGGTTGAA
66 -CAGCAGTGGAATAGGTTGAA
4693705 GATTGTGAAT
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
86 1 0.01
87 80 0.99
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (87 bp):
TTACAGATATTATCTCCCCAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGCCTTATCTCCCTGAG
CAGCAGTGGAATAGGTTGAAAA
Found at i:4693947 original size:44 final size:46
Alignment explanation
Indices: 4693899--4694000 Score: 124
Period size: 45 Copynumber: 2.3 Consensus size: 46
4693889 TATCTTTCTG
* *
4693899 AAGTTGCAGTGGA-GCAGACT-AA-ATAAGCGACTTTTATC-CTCCTA
1 AAGTTGCAGTGGAGGCAGACTGAAGAT-AGCGAATCTTATCTC-CCTA
*
4693943 AAGTTGCAGT-GAGGCAGACTGAAGATGGCGAATCTTATCTCCCTA
1 AAGTTGCAGTGGAGGCAGACTGAAGATAGCGAATCTTATCTCCCTA
4693988 AAGTTGCAGTGGA
1 AAGTTGCAGTGGA
4694001 AAAGATTAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
43 2 0.04
44 17 0.34
45 26 0.52
46 5 0.10
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (46 bp):
AAGTTGCAGTGGAGGCAGACTGAAGATAGCGAATCTTATCTCCCTA
Found at i:4693994 original size:217 final size:219
Alignment explanation
Indices: 4693745--4694181 Score: 605
Period size: 217 Copynumber: 2.0 Consensus size: 219
4693735 TGGAATAGGT
* * *
4693745 TGAAGATTGAGAATCTTACCTCTCTGAAGTTGCAGT-AAAGAAGATTAAAGCCAATGATCCTATC
1 TGAAGATGGAGAATCTTACCTCCCTAAAGTTGCAGTGAAA-AAGATTAAAGCCAATGATCCTATC
*
4693809 TCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCCCTCTGAAGTTACAG-AAAGC
65 TCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCCCTCTGAAGTTACAGTAAAGC
* ** * *
4693873 AGATCGCATCCAGTCTTATCTTTCTGAAGTTGCAGTGGAGCAGACT-AA-ATAAGCGACTTTTAT
130 AGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTCAAGA-AAGCAACTTTTAT
*
4693936 CCTCCT-AAAGTTGCAGTGAGGCAGAC
194 CCCCCTGAAA-TTGCAGTGAGGCAGAC
* * *
4693962 TGAAGATGGCGAATCTTATCTCCCTAAAGTTGCAGTGGAAAAGATTAAAGCCAATGATCCTATCT
1 TGAAGATGGAGAATCTTACCTCCCTAAAGTTGCAGTGAAAAAGATTAAAGCCAATGATCCTATCT
* ** * * *
4694027 CTCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTTTCTGAAGTTGCAGTAGAGTA
66 CCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCCCTCTGAAGTTACAGTAAAGCA
* * *
4694092 GATCACATCGAGTCTTATCTCCCTGAAGTTGTAGTAGAGCAGACTCAAGAAAGCAAGTTTTATCC
131 GATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTCAAGAAAGCAACTTTTATCC
*
4694157 CCCTGAAATTGCAGTGGGGCAGAC
196 CCCTGAAATTGCAGTGAGGCAGAC
4694181 T
1 T
4694182 AAATACACAA
Statistics
Matches: 192, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
217 109 0.57
218 45 0.23
219 34 0.18
220 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (219 bp):
TGAAGATGGAGAATCTTACCTCCCTAAAGTTGCAGTGAAAAAGATTAAAGCCAATGATCCTATCT
CCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCCCTCTGAAGTTACAGTAAAGCA
GATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTCAAGAAAGCAACTTTTATCC
CCCTGAAATTGCAGTGAGGCAGAC
Found at i:4694089 original size:44 final size:44
Alignment explanation
Indices: 4693757--4694134 Score: 201
Period size: 44 Copynumber: 8.7 Consensus size: 44
4693747 AAGATTGAGA
* * * *
4693757 ATCTTACCTCTCTGAAGTTGCAGTAAAGAAGATTAAAGCCA-ATG
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACCACA-G
* * * *
4693801 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAG
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACCACAG
* * * *** *
4693845 ATCTTATCCCTCTGAAGTTACAG-AAAGCAGA-TCGCATC-CAG
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACCACAG
* * *
4693886 -TCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTAAATA--AGC-G
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAA-ACCA-CAG
* * * * ***
4693928 ACTTTTATC-CTCCTAAAGTTGCAGT-GAGGCAGACTGAAGATGGC-G
1 A-TCTTATCTCT-CTGAAGTTGCAGTAGA-GCAGA-TTAAAACCACAG
* * * ** *
4693973 AATCTTATCTCCCTAAAGTTGCAGTGGAAAAGATTAAAGCCA-ATG
1 -ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACCACA-G
* *
4694018 ATCCTATCTCTCTGAAGTTGCAGTAGAGCGGATTAAAACCACAG
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACCACAG
* * * * * *
4694062 ATCTTATCTTTCTGAAGTTGCAGTAGAGTAGA-TCACATC-GAG
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACCACAG
* *
4694104 -TCTTATCTCCCTGAAGTTGTAGTAGAGCAGA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
4694135 CTCAAGAAAG
Statistics
Matches: 251, Mismatches: 64, Indels: 41
0.71 0.18 0.12
Matches are distributed among these distances:
40 19 0.08
41 36 0.14
42 7 0.03
43 14 0.06
44 142 0.57
45 29 0.12
46 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACCACAG
Found at i:4695713 original size:3 final size:3
Alignment explanation
Indices: 4695700--4695761 Score: 88
Period size: 3 Copynumber: 20.3 Consensus size: 3
4695690 AAATAAATTG
* *
4695700 TTA TCA TTA TTA TTA TTTA TTG TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
4695746 TTA CTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
4695762 ATTCATATGC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
3 49 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:4696165 original size:8 final size:8
Alignment explanation
Indices: 4696154--4696249 Score: 58
Period size: 8 Copynumber: 11.6 Consensus size: 8
4696144 TTGCTTGTCA
*
4696154 TTATTTAT
1 TTATTCAT
4696162 TTATTCAT
1 TTATTCAT
4696170 TTATTCAT
1 TTATTCAT
4696178 ATTATT--T
1 -TTATTCAT
*
4696185 CTATGTCAT
1 TTAT-TCAT
4696194 TGT-TGTC-T
1 T-TAT-TCAT
4696202 TTATTACTAT
1 TTATT-C-AT
4696212 TGTATT-AT
1 T-TATTCAT
*
4696220 TTATTTAT
1 TTATTCAT
4696228 TTATTCAT
1 TTATTCAT
4696236 TTATTCAT
1 TTATTCAT
4696244 ATTATT
1 -TTATT
4696250 TCTATGCCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 23
0.73 0.04 0.23
Matches are distributed among these distances:
6 3 0.04
7 8 0.11
8 39 0.54
9 15 0.21
10 3 0.04
11 4 0.06
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.64
Consensus pattern (8 bp):
TTATTCAT
Found at i:4696211 original size:23 final size:22
Alignment explanation
Indices: 4696179--4696277 Score: 64
Period size: 23 Copynumber: 4.5 Consensus size: 22
4696169 TTTATTCATA
*
4696179 TTATTTCTATGTCATTGTTGTCT
1 TTATTACTATGTCATTGTT-TCT
* *
4696202 TTATTACTATTGT-ATTATTTAT
1 TTATTACTA-TGTCATTGTTTCT
4696224 TTATT--TAT-TCATT-TATTCAT
1 TTATTACTATGTCATTGT-TTC-T
* *
4696244 ATTATTTCTATGCCATTGTTGTCT
1 -TTATTACTATGTCATTGTT-TCT
4696268 TTATTACTAT
1 TTATTACTAT
4696278 TGTATTTGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
18 2 0.03
19 6 0.10
20 3 0.05
21 5 0.08
22 7 0.12
23 25 0.42
24 9 0.15
25 3 0.05
ACGTcount: A:0.21, C:0.11, G:0.07, T:0.61
Consensus pattern (22 bp):
TTATTACTATGTCATTGTTTCT
Found at i:4696224 original size:66 final size:66
Alignment explanation
Indices: 4696154--4696283 Score: 251
Period size: 66 Copynumber: 2.0 Consensus size: 66
4696144 TTGCTTGTCA
*
4696154 TTATTTATTTATTCATTTATTCATATTATTTCTATGTCATTGTTGTCTTTATTACTATTGTATTA
1 TTATTTATTTATTCATTTATTCATATTATTTCTATGCCATTGTTGTCTTTATTACTATTGTATTA
4696219 T
66 T
4696220 TTATTTATTTATTCATTTATTCATATTATTTCTATGCCATTGTTGTCTTTATTACTATTGTATT
1 TTATTTATTTATTCATTTATTCATATTATTTCTATGCCATTGTTGTCTTTATTACTATTGTATT
4696284 TGTTATCACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.22, C:0.10, G:0.06, T:0.62
Consensus pattern (66 bp):
TTATTTATTTATTCATTTATTCATATTATTTCTATGCCATTGTTGTCTTTATTACTATTGTATTA
T
Found at i:4706929 original size:20 final size:19
Alignment explanation
Indices: 4706892--4706933 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
4706882 TAGTAAAACA
4706892 TTATTTATTAAAATTTATAT
1 TTATTTATTAAAATTTAT-T
*
4706912 TTATTTTTTCAAAA-TTATT
1 TTATTTATT-AAAATTTATT
4706931 TTA
1 TTA
4706934 AGAAATCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 12 0.60
21 4 0.20
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTTATTAAAATTTATT
Found at i:4707266 original size:26 final size:27
Alignment explanation
Indices: 4707233--4707300 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 27
4707223 TTTTTGGCAC
*
4707233 ATAA-AAATATAATTTTTAAAAA-AAT
1 ATAATAAATATAATTTTAAAAAATAAT
4707258 -TAATTAAATATATATTTTAAAAAATAAT
1 ATAA-TAAATATA-ATTTTAAAAAATAAT
4707286 ATAATAAATACTAAT
1 ATAATAAATA-TAAT
4707301 AATTTAACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
24 3 0.08
26 7 0.19
27 10 0.28
28 11 0.31
29 5 0.14
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (27 bp):
ATAATAAATATAATTTTAAAAAATAAT
Found at i:4719118 original size:12 final size:13
Alignment explanation
Indices: 4719092--4719117 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4719082 TTACAAATAT
4719092 ATATACAAGTAAA
1 ATATACAAGTAAA
4719105 ATATACAAGTAAA
1 ATATACAAGTAAA
4719118 TTTACAAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (13 bp):
ATATACAAGTAAA
Found at i:4719123 original size:12 final size:12
Alignment explanation
Indices: 4719092--4719125 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
4719082 TTACAAATAT
4719092 ATATACAAGTAAA
1 ATATACAAGT-AA
4719105 ATATACAAGTAA
1 ATATACAAGTAA
*
4719117 ATTTACAAG
1 ATATACAAG
4719126 CATGTGTACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (12 bp):
ATATACAAGTAA
Found at i:4719300 original size:23 final size:22
Alignment explanation
Indices: 4719274--4719323 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
4719264 AACATGTGTA
* *
4719274 TATATTTATAAAAAATGTATAAG
1 TATATGTATAAAAAATATA-AAG
* *
4719297 TATATGTATATACAATATAAAG
1 TATATGTATAAAAAATATAAAG
4719319 TATAT
1 TATAT
4719324 AAAAGTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (22 bp):
TATATGTATAAAAAATATAAAG
Found at i:4721868 original size:12 final size:12
Alignment explanation
Indices: 4721851--4721882 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
4721841 TTACTAATTT
4721851 AAATTTAATAAA
1 AAATTTAATAAA
4721863 AAATTTAATAAA
1 AAATTTAATAAA
4721875 AAATTTAA
1 AAATTTAA
4721883 ATTTTAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAATTTAATAAA
Found at i:4722377 original size:13 final size:13
Alignment explanation
Indices: 4722359--4722383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4722349 AATTAAAGGG
4722359 TTAAAATTTAAAT
1 TTAAAATTTAAAT
4722372 TTAAAATTTAAA
1 TTAAAATTTAAA
4722384 GATGATAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAAATTTAAAT
Found at i:4728450 original size:43 final size:43
Alignment explanation
Indices: 4728403--4728554 Score: 180
Period size: 43 Copynumber: 3.5 Consensus size: 43
4728393 AAAGCGGTGT
* * * * *
4728403 TAAAGGTCATGTTCTATAGTGGTGTTTATTAGG-AAAGCCCCAT
1 TAAAGGTCATGTTCTATAGTGGCGTTT-GTGGGAAAAGCACCAC
* * * *
4728446 TAAAGGTCAAGTTCTTTAGTGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTATAGTGGCGTTTGTGGGAAAAGCACCAC
* * *
4728489 TAAAAGTCATGTTCTATAGCGGCATTTGTGGGAAAAGCACCAC
1 TAAAGGTCATGTTCTATAGTGGCGTTTGTGGGAAAAGCACCAC
4728532 TAAAGGTCATGTTCTATAGTGGC
1 TAAAGGTCATGTTCTATAGTGGC
4728555 ATTTTTCCAC
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 3 0.03
43 88 0.97
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGTGGCGTTTGTGGGAAAAGCACCAC
Found at i:4728526 original size:86 final size:86
Alignment explanation
Indices: 4728371--4728554 Score: 217
Period size: 86 Copynumber: 2.1 Consensus size: 86
4728361 TAGCCGCGTT
* ** * * * ** *
4728371 TTCTTTAGCGGCGTTTGTAGGAAAAGCGGTGTTAAAGGTCATGTTCTATAGTGGTGTTTATTAGG
1 TTCTTTAGTGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCATTTAGTAGG
* *
4728436 AAAGCCCCATTAAAGGTCAAG
66 AAAGCACCACTAAAGGTCAAG
* *
4728457 TTCTTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCATTT-GTGGG
1 TTCTTTAGTGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCATTTAGTAGG
*
4728521 AAAAGCACCACTAAAGGTCATG
66 -AAAGCACCACTAAAGGTCAAG
*
4728543 TTCTATAGTGGC
1 TTCTTTAGTGGC
4728555 ATTTTTCCAC
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
85 3 0.04
86 79 0.96
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (86 bp):
TTCTTTAGTGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCATTTAGTAGG
AAAGCACCACTAAAGGTCAAG
Found at i:4729620 original size:20 final size:20
Alignment explanation
Indices: 4729589--4729640 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
4729579 AAACTATGAT
*
4729589 GCATGCTAGTTCTGTTTGAA
1 GCATGCTGGTTCTGTTTGAA
*
4729609 GCATGTTGGTTCTGTTTGAA
1 GCATGCTGGTTCTGTTTGAA
4729629 GCATGCTGGTTC
1 GCATGCTGGTTC
4729641 AGCTTTAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.40
Consensus pattern (20 bp):
GCATGCTGGTTCTGTTTGAA
Found at i:4731651 original size:22 final size:22
Alignment explanation
Indices: 4731605--4731670 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 22
4731595 TCAGTAGGAG
* *
4731605 GGGAA-AACTTAAG-TTTTACA
1 GGGAATAACTTGAGTTTTTATA
*
4731625 AGGAATAACTTGAGTTTTTATA
1 GGGAATAACTTGAGTTTTTATA
* *
4731647 GGGAATAACCTGAATTTTTATA
1 GGGAATAACTTGAGTTTTTATA
4731669 GG
1 GG
4731671 AAAAATCATT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.11
21 7 0.18
22 27 0.71
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (22 bp):
GGGAATAACTTGAGTTTTTATA
Found at i:4736975 original size:3 final size:3
Alignment explanation
Indices: 4736969--4736999 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
4736959 AAAAAAATTT
4736969 GAA GAA G-A GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
4737000 GAGCGGGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:4737110 original size:48 final size:46
Alignment explanation
Indices: 4737005--4737110 Score: 108
Period size: 48 Copynumber: 2.2 Consensus size: 46
4736995 GAAGAGAGCG
* *
4737005 GGAAGGGA-AGGGAAGGGGAAAAAGAAAGAAAAAAAAAAAAGAGAA
1 GGAAAGGAGAGGGAAGGAGAAAAAGAAAGAAAAAAAAAAAAGAGAA
* * *
4737050 GCAAAATAGAGAGGGAAGGAGAAAGAGAAAGAAAAAAAATAAATAG-GAAA
1 G-GAAA-GGAGAGGGAAGGAGAAAAAGAAAGAAAAAAAA-AAA-AGAG-AA
4737100 GGAAAGGAGAG
1 GGAAAGGAGAG
4737111 ATTGTGTTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
45 1 0.02
46 2 0.04
47 2 0.04
48 31 0.65
49 7 0.15
50 5 0.10
ACGTcount: A:0.62, C:0.01, G:0.34, T:0.03
Consensus pattern (46 bp):
GGAAAGGAGAGGGAAGGAGAAAAAGAAAGAAAAAAAAAAAAGAGAA
Found at i:4739142 original size:33 final size:34
Alignment explanation
Indices: 4739059--4739145 Score: 90
Period size: 33 Copynumber: 2.6 Consensus size: 34
4739049 GACATTACTT
*
4739059 CACCGCAGTACAGCACTCCT-TCTGGCTCGTATC
1 CACCGCAGTATAGCACTCCTCTCTGGCTCGTATC
* * * *
4739092 CACCACATTACT-CCACTCCTCT-TGGGTCGTATC
1 CACCGCAGTA-TAGCACTCCTCTCTGGCTCGTATC
*
4739125 CATCGCAGTATAGCACTCCTC
1 CACCGCAGTATAGCACTCCTC
4739146 CCGGCTCAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
32 1 0.02
33 40 0.95
34 1 0.02
ACGTcount: A:0.20, C:0.39, G:0.15, T:0.26
Consensus pattern (34 bp):
CACCGCAGTATAGCACTCCTCTCTGGCTCGTATC
Found at i:4739483 original size:8 final size:8
Alignment explanation
Indices: 4739470--4739501 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
4739460 AGATTAATTG
4739470 CAACATTA
1 CAACATTA
4739478 CAACATTA
1 CAACATTA
4739486 CAACATTA
1 CAACATTA
4739494 CAACATTA
1 CAACATTA
4739502 AAACTTGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (8 bp):
CAACATTA
Found at i:4739559 original size:48 final size:48
Alignment explanation
Indices: 4739488--4739580 Score: 177
Period size: 48 Copynumber: 1.9 Consensus size: 48
4739478 CAACATTACA
*
4739488 ACATTACAACATTAAAACTTGGAACAAGCTTTGTAATATAAATTAAAT
1 ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAAAT
4739536 ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTA
1 ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTA
4739581 GGTATATTGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.48, C:0.13, G:0.08, T:0.31
Consensus pattern (48 bp):
ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAAAT
Found at i:4743449 original size:14 final size:13
Alignment explanation
Indices: 4743426--4743460 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
4743416 AAAAATACAT
4743426 TTTC-TTTCTTTC
1 TTTCTTTTCTTTC
4743438 TTGTCTTTTCTTTC
1 TT-TCTTTTCTTTC
4743452 TTTCTTTTC
1 TTTCTTTTC
4743461 CCTCTCTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.10
13 9 0.43
14 10 0.48
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (13 bp):
TTTCTTTTCTTTC
Found at i:4743864 original size:17 final size:17
Alignment explanation
Indices: 4743798--4743864 Score: 64
Period size: 17 Copynumber: 3.8 Consensus size: 17
4743788 ATTTAAATTC
*
4743798 ATTATTATGTTTTTAAAAT
1 ATTATTAT-TTTTT-ATAT
4743817 ATTTATGTA-TTTTTATAT
1 A-TTAT-TATTTTTTATAT
* *
4743835 ATTTTTAATTTTTATAT
1 ATTATTATTTTTTATAT
4743852 ATTATTATTTTTT
1 ATTATTATTTTTT
4743865 GTCAACATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
16 2 0.05
17 23 0.56
18 4 0.10
19 6 0.15
20 4 0.10
21 2 0.05
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
ATTATTATTTTTTATAT
Found at i:4756324 original size:29 final size:29
Alignment explanation
Indices: 4756259--4756317 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
4756249 AACTATTTGT
* *
4756259 ACTAATCAATAACATTATAAAAATATTGA
1 ACTAATTAATAACATTATAAAAATATAGA
4756288 ACTAATTAATAACATTATAAAAATATAGA
1 ACTAATTAATAACATTATAAAAATATAGA
4756317 A
1 A
4756318 ACCATTAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (29 bp):
ACTAATTAATAACATTATAAAAATATAGA
Found at i:4759321 original size:11 final size:11
Alignment explanation
Indices: 4759292--4759348 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
4759282 TAATAATTAA
4759292 AAATATTAAAAT
1 AAAT-TTAAAAT
*
4759304 CATATTTAAAAT
1 -AAATTTAAAAT
*
4759316 AAATTTTAAAT
1 AAATTTAAAAT
* * *
4759327 TATTTTAAATT
1 AAATTTAAAAT
4759338 AAATTTAAAAT
1 AAATTTAAAAT
4759349 TTTATAATAG
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
11 24 0.71
12 7 0.21
13 3 0.09
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (11 bp):
AAATTTAAAAT
Found at i:4759340 original size:22 final size:22
Alignment explanation
Indices: 4759292--4759349 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
4759282 TAATAATTAA
*
4759292 AAATATTAAAATCATATTTAAAAT
1 AAAT-TTAAAATTAT-TTTAAAAT
* *
4759316 AAATTTTAAATTATTTTAAATT
1 AAATTTAAAATTATTTTAAAAT
4759338 AAATTTAAAATT
1 AAATTTAAAATT
4759350 TTATAATAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 18 0.60
23 8 0.27
24 4 0.13
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATTTAAAATTATTTTAAAAT
Found at i:4759349 original size:12 final size:12
Alignment explanation
Indices: 4759292--4759349 Score: 50
Period size: 12 Copynumber: 5.0 Consensus size: 12
4759282 TAATAATTAA
*
4759292 AAATATTAAAATC
1 AAAT-TTAAAATT
*
4759305 ATATTTAAAA-T
1 AAATTTAAAATT
*
4759316 AAATTTTAAATT
1 AAATTTAAAATT
*
4759328 --ATTTTAAATT
1 AAATTTAAAATT
4759338 AAATTTAAAATT
1 AAATTTAAAATT
4759350 TTATAATAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
10 10 0.27
11 8 0.22
12 16 0.43
13 3 0.08
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (12 bp):
AAATTTAAAATT
Found at i:4765782 original size:21 final size:20
Alignment explanation
Indices: 4765758--4765813 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
4765748 ATATTTATCA
*
4765758 TTATATCATTATTCATTATTG
1 TTATATCATTATT-ATTATGG
* *
4765779 TTATATTATTTATTATTGTGG
1 TTATATCA-TTATTATTATGG
4765800 TTATTATCATTATT
1 TTA-TATCATTATT
4765814 TCTATGTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 20 0.69
22 9 0.31
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (20 bp):
TTATATCATTATTATTATGG
Found at i:4765851 original size:2 final size:2
Alignment explanation
Indices: 4765844--4765868 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4765834 GTTTTTACAG
4765844 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4765869 GCATTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4765926 original size:25 final size:25
Alignment explanation
Indices: 4765852--4765939 Score: 81
Period size: 25 Copynumber: 3.6 Consensus size: 25
4765842 AGTATATATA
*
4765852 TATATATATATATATATGCATTTTTT
1 TATATATA-ATATATACGCATTTTTT
* * * * * *
4765878 T-TATGTATTAAACACACATATTTT
1 TATATATAATATATACGCATTTTTT
4765902 TATATATAATATATACGCATTTTTT
1 TATATATAATATATACGCATTTTTT
*
4765927 TAAATAT-ATATAT
1 TATATATAATATAT
4765940 TTTTTAAAGC
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
24 18 0.38
25 28 0.60
26 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (25 bp):
TATATATAATATATACGCATTTTTT
Found at i:4769053 original size:35 final size:35
Alignment explanation
Indices: 4768913--4769059 Score: 231
Period size: 35 Copynumber: 4.2 Consensus size: 35
4768903 GGCGTGTTTC
*
4768913 GGTTGGATTAGCTCTTATGAGCATTGGCGTATTTT
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTATTAT
* * *
4768948 GGTTGGATTAGCTCTTATGAGCATTGGTGTGTTAC
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTATTAT
* *
4768983 GATTGGATTAGCTCTTATGAGCATTGGCGTGTTAT
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTATTAT
*
4769018 GGTTGGATTACCTCTTATGAGCATTGGCGTATTAT
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTATTAT
4769053 GGTTGGA
1 GGTTGGA
4769060 CTGATGATGT
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 102 1.00
ACGTcount: A:0.18, C:0.12, G:0.30, T:0.40
Consensus pattern (35 bp):
GGTTGGATTAGCTCTTATGAGCATTGGCGTATTAT
Found at i:4772656 original size:9 final size:9
Alignment explanation
Indices: 4772611--4772684 Score: 64
Period size: 9 Copynumber: 8.3 Consensus size: 9
4772601 ATAGTTTTTT
4772611 AAATTATAA
1 AAATTATAA
*
4772620 AAA-AATTAA
1 AAATTA-TAA
* *
4772629 AACTTTTAA
1 AAATTATAA
4772638 AAA-TAT-A
1 AAATTATAA
*
4772645 AAATTTTAA
1 AAATTATAA
*
4772654 AAATTGTAA
1 AAATTATAA
4772663 AATATTATAA
1 AA-ATTATAA
4772673 AAATTATAA
1 AAATTATAA
4772682 AAA
1 AAA
4772685 AATTGGAAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
7 4 0.08
8 5 0.10
9 34 0.67
10 8 0.16
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (9 bp):
AAATTATAA
Found at i:4772675 original size:19 final size:17
Alignment explanation
Indices: 4772620--4772683 Score: 78
Period size: 16 Copynumber: 3.8 Consensus size: 17
4772610 TAAATTATAA
*
4772620 AAAAATTA-AAACTTTT
1 AAAAATTATAAAATTTT
4772636 AAAAA-TATAAAATTTT
1 AAAAATTATAAAATTTT
*
4772652 AAAAATTGTAAAATATTAT
1 AAAAATTATAAAAT-TT-T
4772671 AAAAATTATAAAA
1 AAAAATTATAAAA
4772684 AAATTGGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
15 2 0.05
16 17 0.41
17 7 0.17
18 2 0.05
19 13 0.32
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAAATTATAAAATTTT
Found at i:4773249 original size:16 final size:16
Alignment explanation
Indices: 4773228--4773261 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4773218 TTATAATTTG
4773228 TAAAAAAAATTAAAAA
1 TAAAAAAAATTAAAAA
* *
4773244 TAAAAAAACTTGAAAA
1 TAAAAAAAATTAAAAA
4773260 TA
1 TA
4773262 TTACTCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (16 bp):
TAAAAAAAATTAAAAA
Found at i:4773298 original size:29 final size:29
Alignment explanation
Indices: 4773227--4773300 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 29
4773217 TTTATAATTT
* *
4773227 GTAAAAAAA-ATTAAAAATAAAAAAACTT
1 GTAAAAAAATATTCAAAATAAAAAAACTA
* * * * *
4773255 G-AAAATATTACTCAAAATTATAAAACTA
1 GTAAAAAAATATTCAAAATAAAAAAACTA
4773283 GTAAAAAAATATTCAAAA
1 GTAAAAAAATATTCAAAA
4773301 AAATTTAAAA
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
27 5 0.15
28 16 0.47
29 13 0.38
ACGTcount: A:0.65, C:0.07, G:0.04, T:0.24
Consensus pattern (29 bp):
GTAAAAAAATATTCAAAATAAAAAAACTA
Found at i:4773300 original size:10 final size:10
Alignment explanation
Indices: 4773287--4773392 Score: 76
Period size: 10 Copynumber: 10.6 Consensus size: 10
4773277 AAACTAGTAA
*
4773287 AAAAATATTC
1 AAAAATATTT
*
4773297 AAAAAAATTT
1 AAAAATATTT
*
4773307 AAAATCTATTT
1 AAAA-ATATTT
* *
4773318 AAAAAAATTC
1 AAAAATATTT
4773328 AAAAA-ATTT
1 AAAAATATTT
*
4773337 AAAATCTATTT
1 AAAA-ATATTT
*
4773348 AAAAA-AATT
1 AAAAATATTT
4773357 AAAAATAATTT
1 AAAAAT-ATTT
*
4773368 -AAAATATTG
1 AAAAATATTT
4773377 AAAAAT-TTGT
1 AAAAATATT-T
4773387 AAAAAT
1 AAAAAT
4773393 TCTTAAACGT
Statistics
Matches: 75, Mismatches: 14, Indels: 14
0.73 0.14 0.14
Matches are distributed among these distances:
9 20 0.27
10 36 0.48
11 19 0.25
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAATATTT
Found at i:4773322 original size:31 final size:31
Alignment explanation
Indices: 4773268--4773372 Score: 144
Period size: 30 Copynumber: 3.4 Consensus size: 31
4773258 AATATTACTC
* *
4773268 AAAATTATAAAA-CTAGTAAAAAAATATTCAAA
1 AAAATT-TAAAATCTATTTAAAAAA-ATTCAAA
4773300 AAAATTTAAAATCTATTTAAAAAAATTC-AA
1 AAAATTTAAAATCTATTTAAAAAAATTCAAA
4773330 AAAATTTAAAATCTATTTAAAAAAATT-AAA
1 AAAATTTAAAATCTATTTAAAAAAATTCAAA
4773360 AATAATTTAAAAT
1 AA-AATTTAAAAT
4773373 ATTGAAAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
30 33 0.49
31 19 0.28
32 16 0.24
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (31 bp):
AAAATTTAAAATCTATTTAAAAAAATTCAAA
Found at i:4773382 original size:20 final size:19
Alignment explanation
Indices: 4773288--4773382 Score: 68
Period size: 21 Copynumber: 4.7 Consensus size: 19
4773278 AACTAGTAAA
4773288 AAAATATTCAAAAA-AATTT
1 AAAATATT-AAAAATAATTT
*
4773307 AAAATCTATTTAAAAA-AATTC
1 AAAA--TA-TTAAAAATAATTT
* * *
4773328 AAAAAATTTAAAATCTATTT
1 AAAATATTAAAAAT-AATTT
*
4773348 AAAAAAATTAAAAATAATTT
1 -AAAATATTAAAAATAATTT
4773368 AAAATATTGAAAAAT
1 AAAATATT-AAAAAT
4773383 TTGTAAAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
18 6 0.10
19 12 0.20
20 13 0.21
21 28 0.46
22 2 0.03
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (19 bp):
AAAATATTAAAAATAATTT
Found at i:4773783 original size:28 final size:29
Alignment explanation
Indices: 4773740--4773798 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
4773730 CTAAGATAAA
*
4773740 TTTTAAAGATTATTATAATTTTTACAATT
1 TTTTAAAGATTATTATAATTTTCACAATT
* * *
4773769 TTTTAAA-ATTTTTATGATTTTCAGAATT
1 TTTTAAAGATTATTATAATTTTCACAATT
4773797 TT
1 TT
4773799 AAACTCTTCG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (29 bp):
TTTTAAAGATTATTATAATTTTCACAATT
Found at i:4783782 original size:11 final size:11
Alignment explanation
Indices: 4783766--4783812 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
4783756 TGTTTCTCTG
4783766 TAAAAATAAAA
1 TAAAAATAAAA
4783777 TAAAAATAAAA
1 TAAAAATAAAA
*
4783788 TAAATAATAATA
1 TAAA-AATAAAA
*
4783800 TGAAAATTAAAA
1 T-AAAAATAAAA
4783812 T
1 T
4783813 TAATTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
11 15 0.48
12 13 0.42
13 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:4789585 original size:173 final size:174
Alignment explanation
Indices: 4789285--4789631 Score: 687
Period size: 173 Copynumber: 2.0 Consensus size: 174
4789275 GTTTCAAAAA
4789285 GTGGTTCGGTCTTAGGTTCAACCACTTCGACTTGTTTCTCATGTCGAATTGCCTCTGCTCAAATT
1 GTGGTTCGGTCTTAGGTTCAACCACTTCGACTTGTTTCTCATGTCGAATTGCCTCTGCTCAAATT
4789350 ACTTGGCTCAACCTTTCGACGTCGAATTCTAGGATCCCTTGTCCTAGCTCAACTTCTGTTTTACT
66 ACTTGGCTCAACCTTTCGACGTCGAATTCTAGGATCCCTTGTCCTAGCTCAACTTCTGTTTTACT
4789415 TGTACGTTTAAGAGCTTCTGTCTCTTTTCGTCGTGCTCGTGCTG
131 TGTACGTTTAAGAGCTTCTGTCTCTTTTCGTCGTGCTCGTGCTG
4789459 GTGGTTCGGT-TTAGGTTCAACCACTTCGACTTGTTTCTCATGTCGAATTGCCTCTGCTCAAATT
1 GTGGTTCGGTCTTAGGTTCAACCACTTCGACTTGTTTCTCATGTCGAATTGCCTCTGCTCAAATT
4789523 ACTTGGCTCAACCTTTCGACGTCGAATTCTAGGATCCCTTGTCCTAGCTCAACTTCTGTTTTACT
66 ACTTGGCTCAACCTTTCGACGTCGAATTCTAGGATCCCTTGTCCTAGCTCAACTTCTGTTTTACT
4789588 TGTACGTTTAAGAGCTTCTGTCTCTTTTCGTCGTGCTCGTGCTG
131 TGTACGTTTAAGAGCTTCTGTCTCTTTTCGTCGTGCTCGTGCTG
4789632 ATTTCTCGAT
Statistics
Matches: 173, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
173 163 0.94
174 10 0.06
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.39
Consensus pattern (174 bp):
GTGGTTCGGTCTTAGGTTCAACCACTTCGACTTGTTTCTCATGTCGAATTGCCTCTGCTCAAATT
ACTTGGCTCAACCTTTCGACGTCGAATTCTAGGATCCCTTGTCCTAGCTCAACTTCTGTTTTACT
TGTACGTTTAAGAGCTTCTGTCTCTTTTCGTCGTGCTCGTGCTG
Found at i:4791852 original size:349 final size:348
Alignment explanation
Indices: 4791189--4791885 Score: 1313
Period size: 349 Copynumber: 2.0 Consensus size: 348
4791179 TAATCCGGAG
4791189 AAATAATAAGTATTGAAATTTAGGAGTTAAATTGTTCGGGTTCGTAACTCACGGGTTTTGACGAG
1 AAATAATAAGTATTGAAATTTAGGAGTTAAATTGTTCGGGTTCGTAACTCACGGGTTTTGACGAG
4791254 GCTAACTCCGACCTAAAGCTGAAAATGAATTTAGTTAACTAAGGGTTGGGGCATGTTGGTATTGG
66 GCTAACTCCGACCTAAAGCTGAAAATGAATTTAGTTAACTAAGGGTTGGGGCATGTTGGTATTGG
* * *
4791319 ATAAATTAAATAAGGTAAAAAAAGGGTGAAAAGGATGGGAGGCGTGATTAAGTATGGGGGCTGGA
131 ATAAATTAAATAAGGTAAAAAAAGAGTGAAAAGGATGAGAGGCGTGATTAAGTATGAGGGCTGGA
*
4791384 AATTTAGTAATATATTAAAGTGGGATGGTTAGCTACTGGAAATGAAAAGGGAATTTGAAAAAGGA
196 AATTTAGTAATATATTAAAGTGGGATGGTTAACTACTGGAAATGAAAAGGGAATTTGAAAAAGGA
*
4791449 ATTGCAAATGGTTTAAGTTGGTGGCTAACTTGAAATTAATAAATTGAAGAAAAAGAAACTAAAAA
261 ATTGCAAATGGTTTAAGTTGGTGGCTAACTAGAAATTAATAAATTGAAGAAAAAGAAACTAAAAA
*
4791514 CAACAAAATGTTACGTGAGAAAT
326 CAACAAAATGCTACGTGAGAAAT
4791537 AAATAATAAGTATTGAAATTTAGGAGTTAAATTGTTCGGGTTCGTAACTCACGGGTTTTGACGAG
1 AAATAATAAGTATTGAAATTTAGGAGTTAAATTGTTCGGGTTCGTAACTCACGGGTTTTGACGAG
4791602 GCTAACTCCGACCTAAAGCTGAAAATGAATTTAGTTAACTAAGGGTTGGGGCATGTTGGTATTGG
66 GCTAACTCCGACCTAAAGCTGAAAATGAATTTAGTTAACTAAGGGTTGGGGCATGTTGGTATTGG
4791667 ATAAATTAAATAAGGTAAAAAAATGAGTGAAAAGGATGAGAGGCGTGATTAAGTATGAGGGCTGG
131 ATAAATTAAATAAGGTAAAAAAA-GAGTGAAAAGGATGAGAGGCGTGATTAAGTATGAGGGCTGG
4791732 AAATTTAGTAATATATTAAAGTGGGATGGTTAACTACTGGAAATGAAAAGGGAATTTGAAAAAGG
195 AAATTTAGTAATATATTAAAGTGGGATGGTTAACTACTGGAAATGAAAAGGGAATTTGAAAAAGG
* *
4791797 AATTGCGAATGGTTTAAGTTGGTGGCTAACTAGGAATTAATAAATTGAAGAAAAAGAAACTAAAA
260 AATTGCAAATGGTTTAAGTTGGTGGCTAACTAGAAATTAATAAATTGAAGAAAAAGAAACTAAAA
4791862 ACAACAAAATGCTACGTGAGAAAT
325 ACAACAAAATGCTACGTGAGAAAT
4791886 GAAGAAAAGA
Statistics
Matches: 340, Mismatches: 8, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
348 153 0.45
349 187 0.55
ACGTcount: A:0.40, C:0.08, G:0.26, T:0.27
Consensus pattern (348 bp):
AAATAATAAGTATTGAAATTTAGGAGTTAAATTGTTCGGGTTCGTAACTCACGGGTTTTGACGAG
GCTAACTCCGACCTAAAGCTGAAAATGAATTTAGTTAACTAAGGGTTGGGGCATGTTGGTATTGG
ATAAATTAAATAAGGTAAAAAAAGAGTGAAAAGGATGAGAGGCGTGATTAAGTATGAGGGCTGGA
AATTTAGTAATATATTAAAGTGGGATGGTTAACTACTGGAAATGAAAAGGGAATTTGAAAAAGGA
ATTGCAAATGGTTTAAGTTGGTGGCTAACTAGAAATTAATAAATTGAAGAAAAAGAAACTAAAAA
CAACAAAATGCTACGTGAGAAAT
Found at i:4797442 original size:12 final size:12
Alignment explanation
Indices: 4797425--4797462 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
4797415 GAGCCCATCC
4797425 ATATTAATTTTT
1 ATATTAATTTTT
4797437 ATATT-ATTTTT
1 ATATTAATTTTT
*
4797448 ATA-TAATTTTA
1 ATATTAATTTTT
4797459 ATAT
1 ATAT
4797463 ATATATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 1 0.04
11 17 0.74
12 5 0.22
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:4799269 original size:9 final size:9
Alignment explanation
Indices: 4799242--4799278 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
4799232 TGAGTTTTCG
4799242 AATTCGAAT
1 AATTCGAAT
* *
4799251 AACTCAAAT
1 AATTCGAAT
4799260 AATTCGAAT
1 AATTCGAAT
4799269 AATTCGAAT
1 AATTCGAAT
4799278 A
1 A
4799279 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:4800082 original size:5 final size:5
Alignment explanation
Indices: 4800072--4800098 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
4800062 CTCAAAAATT
4800072 TTCGA TTCGA TTCGA TTCGA TTCGA TT
1 TTCGA TTCGA TTCGA TTCGA TTCGA TT
4800099 GAATGCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (5 bp):
TTCGA
Found at i:4800525 original size:22 final size:22
Alignment explanation
Indices: 4800497--4800546 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
4800487 TGCAGAGGTA
4800497 ATTTCTGCTTCTTCTTCCATCG
1 ATTTCTGCTTCTTCTTCCATCG
4800519 ATTTCTGCTTCTTCTTCCATCG
1 ATTTCTGCTTCTTCTTCCATCG
*
4800541 TTTTCT
1 ATTTCT
4800547 TATTTGGTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.08, C:0.30, G:0.08, T:0.54
Consensus pattern (22 bp):
ATTTCTGCTTCTTCTTCCATCG
Found at i:4801508 original size:34 final size:35
Alignment explanation
Indices: 4801464--4801530 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
4801454 CAGTAAAATA
4801464 TTTTCCGTAAAATGATTT-CGGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
4801498 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
4801531 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:4801588 original size:33 final size:33
Alignment explanation
Indices: 4801511--4801596 Score: 88
Period size: 33 Copynumber: 2.6 Consensus size: 33
4801501 TCTGTAAAAT
* * *
4801511 GATTTACTGGAAAATATTTTCTGGTGTTTGATT
1 GATTTCCTGTAAAATATTTTCTGGTGTTTGATA
* *
4801544 GA-ATCTGTGTAAAATATTTTCTGGTGTTTGGA-A
1 GATTTC-CTGTAAAATATTTTCTGGTGTTT-GATA
4801577 GATTTCCTGT-AAATATTTTC
1 GATTTCCTGTAAAATATTTTC
4801597 CGAAAAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
32 11 0.26
33 28 0.65
34 4 0.09
ACGTcount: A:0.26, C:0.08, G:0.20, T:0.47
Consensus pattern (33 bp):
GATTTCCTGTAAAATATTTTCTGGTGTTTGATA
Found at i:4804688 original size:45 final size:44
Alignment explanation
Indices: 4804603--4804695 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 44
4804593 ATTACAACAT
*
4804603 CATTCCATTCAACCAAACACAATAATACTATTACGCCTCTATTC
1 CATTCCATTCAACCAAACACAATAATACTATTACACCTCTATTC
* * *
4804647 CATTGCATTCAACCAAACA-ATTAAATTACTATTATACCTCTATTC
1 CATTCCATTCAACCAAACACAAT-AA-TACTATTACACCTCTATTC
4804692 CATT
1 CATT
4804696 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 2 0.05
44 20 0.47
45 21 0.49
ACGTcount: A:0.37, C:0.28, G:0.02, T:0.33
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAATAATACTATTACACCTCTATTC
Found at i:4804703 original size:16 final size:16
Alignment explanation
Indices: 4804684--4804748 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
4804674 ACTATTATAC
4804684 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
* *
4804700 CTCTATTCCATTATAC
1 CTCTATTCCATTACAG
*
4804716 CTCTATTTCATTACAG
1 CTCTATTCCATTACAG
4804732 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
4804748 C
1 C
4804749 GAACCAAACG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.25, C:0.31, G:0.05, T:0.40
Consensus pattern (16 bp):
CTCTATTCCATTACAG
Found at i:4804718 original size:32 final size:32
Alignment explanation
Indices: 4804677--4804744 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
4804667 TTAAATTACT
4804677 ATTATACCTCTATTCCATTACAGCTCTATTCC
1 ATTATACCTCTATTCCATTACAGCTCTATTCC
*
4804709 ATTATACCTCTATTTCATTACAGCTCTATTCC
1 ATTATACCTCTATTCCATTACAGCTCTATTCC
4804741 ATTA
1 ATTA
4804745 CAGCGAACCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.26, C:0.28, G:0.03, T:0.43
Consensus pattern (32 bp):
ATTATACCTCTATTCCATTACAGCTCTATTCC
Found at i:4811877 original size:2 final size:2
Alignment explanation
Indices: 4811870--4811925 Score: 85
Period size: 2 Copynumber: 28.0 Consensus size: 2
4811860 ATAAGTTCTC
* *
4811870 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
4811912 AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT
4811926 CAGACTTTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Done.