Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 23 of 75
Found at i:6730892 original size:4 final size:4
Alignment explanation
Indices: 6730883--6730923 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
6730873 ACGTATGTTG
*
6730883 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA AGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
6730924 AGCGTATACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (4 bp):
TGTA
Found at i:6731760 original size:29 final size:29
Alignment explanation
Indices: 6731726--6731789 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
6731716 AGTAAAACAT
*
6731726 GTCCAGCTCAACGCGCTGA-GGAAAAACGC
1 GTCCAGCTCAACGAG-TGAGGGAAAAACGC
* * *
6731755 GTCCAGTTCAGCGAGTTAGGGAAAAACGC
1 GTCCAGCTCAACGAGTGAGGGAAAAACGC
6731784 GTCCAG
1 GTCCAG
6731790 ATTAGTGCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 2 0.07
29 28 0.93
ACGTcount: A:0.30, C:0.27, G:0.30, T:0.14
Consensus pattern (29 bp):
GTCCAGCTCAACGAGTGAGGGAAAAACGC
Found at i:6733701 original size:51 final size:50
Alignment explanation
Indices: 6733574--6733756 Score: 156
Period size: 51 Copynumber: 3.6 Consensus size: 50
6733564 AAAGTGATGG
* * *
6733574 TCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTACCGGAATGATAGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGCGTACCGGAATGATAGA
* * * * * * *
6733624 TCGCATGTGTAGTATTATGTGCAGGCTACTATGCGTACCGG-ATAGTTTCGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGCGTACCGGAAT-G-ATAGA
* * * *
6733675 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGG-ATTATAATGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGCGTACCGGAATGAT-A-GA
* *
6733726 TCACATGTGTAGTACTCTGTGCAAGG-TACTA
1 TCACGTGTGTAGTACTATGTG-AAGGCTACTA
6733757 TGTGAACCGA
Statistics
Matches: 106, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
49 3 0.03
50 36 0.34
51 63 0.59
52 4 0.04
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGCGTACCGGAATGATAGA
Found at i:6733813 original size:45 final size:45
Alignment explanation
Indices: 6733762--6733854 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
6733752 TACTATGTGA
* * *
6733762 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTCGCTATGTGCTGAATCC
6733807 ACCGAACATCATTGATTAATAAGGTGGTCGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTCGCTATGTGCTGAATCC
6733852 ACC
1 ACC
6733855 AAGTATCTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTCGCTATGTGCTGAATCC
Found at i:6738094 original size:20 final size:20
Alignment explanation
Indices: 6738037--6738107 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
6738027 TTCAATTATA
*
6738037 ATTAAACTTAATTACTTTAAT
1 ATTAAA-TTAATAACTTTAAT
6738058 ATTAAATT--TAA-TTTAAT
1 ATTAAATTAATAACTTTAAT
* *
6738075 ATCAACTTAATAACTTTAAT
1 ATTAAATTAATAACTTTAAT
6738095 ATTAAATTAATAA
1 ATTAAATTAATAA
6738108 AATACTATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
17 12 0.29
18 2 0.05
19 3 0.07
20 19 0.45
21 6 0.14
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAAATTAATAACTTTAAT
Found at i:6739659 original size:14 final size:15
Alignment explanation
Indices: 6739626--6739657 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6739616 TATGCATGCA
*
6739626 AAATATAAAAGACAT
1 AAATAAAAAAGACAT
6739641 AAATAAAAAAGACAT
1 AAATAAAAAAGACAT
6739656 AA
1 AA
6739658 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATAAAAAAGACAT
Found at i:6743532 original size:16 final size:16
Alignment explanation
Indices: 6743511--6743551 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
6743501 ATATTTTATA
*
6743511 TAATTTTAATAATAAT
1 TAATTTTAATAACAAT
6743527 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
6743543 TAGTTTTAA
1 TAATTTTAA
6743552 GTTTAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:6747988 original size:117 final size:118
Alignment explanation
Indices: 6747832--6748067 Score: 465
Period size: 117 Copynumber: 2.0 Consensus size: 118
6747822 TATTTTTAAA
6747832 AAAATATATTTTTTCTTTGAATAAAACATTTTGTTTTACTTATATAATGGGTGTAACATAATTTT
1 AAAATATATTTTTTCTTTGAATAAAACATTTTGTTTTACTTATATAATGGGTGTAACATAATTTT
6747897 TTTTATTAATTTGGTATGTTGATTTAAATTAATTGTTTTAACAAAAAAAATTC
66 TTTTATTAATTTGGTATGTTGATTTAAATTAATTGTTTTAACAAAAAAAATTC
6747950 AAAATATA-TTTTTCTTTGAATAAAACATTTTGTTTTACTTATATAATGGGTGTAACATAATTTT
1 AAAATATATTTTTTCTTTGAATAAAACATTTTGTTTTACTTATATAATGGGTGTAACATAATTTT
6748014 TTTTATTAATTTGGTATGTTGATTTAAATTAATTGTTTTAACAAAAAAAATTC
66 TTTTATTAATTTGGTATGTTGATTTAAATTAATTGTTTTAACAAAAAAAATTC
6748067 A
1 A
6748068 TATACTCCTA
Statistics
Matches: 118, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
117 110 0.93
118 8 0.07
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (118 bp):
AAAATATATTTTTTCTTTGAATAAAACATTTTGTTTTACTTATATAATGGGTGTAACATAATTTT
TTTTATTAATTTGGTATGTTGATTTAAATTAATTGTTTTAACAAAAAAAATTC
Found at i:6748638 original size:41 final size:41
Alignment explanation
Indices: 6748580--6748662 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
6748570 CGCTGCGATG
*
6748580 ACCATCGCTTGATGTCACGATGTGGACTCTGTTTTTGGCAC
1 ACCATCGCTTGACGTCACGATGTGGACTCTGTTTTTGGCAC
6748621 ACCATCGCTTGACGTCACGATGTGGACTCTGTTTTTGGCAC
1 ACCATCGCTTGACGTCACGATGTGGACTCTGTTTTTGGCAC
6748662 A
1 A
6748663 AATTAAGCCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (41 bp):
ACCATCGCTTGACGTCACGATGTGGACTCTGTTTTTGGCAC
Found at i:6749431 original size:17 final size:19
Alignment explanation
Indices: 6749398--6749432 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
6749388 AATATTTGGA
6749398 TATTGTATAACTTTTGTTT
1 TATTGTATAACTTTTGTTT
6749417 TATTGT-TAA-TTTTGTT
1 TATTGTATAACTTTTGTT
6749433 ACTATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (19 bp):
TATTGTATAACTTTTGTTT
Found at i:6757732 original size:20 final size:21
Alignment explanation
Indices: 6757706--6757747 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
6757696 AGAGCTAATT
6757706 AAAACACTAACTCATTCATTA
1 AAAACACTAACTCATTCATTA
* *
6757727 ATACACACTAACTTATTCATT
1 A-AAACACTAACTCATTCATT
6757748 TATTCATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAACACTAACTCATTCATTA
Found at i:6760149 original size:50 final size:50
Alignment explanation
Indices: 6760086--6760190 Score: 165
Period size: 50 Copynumber: 2.1 Consensus size: 50
6760076 TATGAAAAAT
* *
6760086 TAATAATGTTAACAACATAATAATTAACTATTTAACATTAAATAATATAA
1 TAATAATGTTAACAACATAATAATTAACTAATTAAAATTAAATAATATAA
* * *
6760136 TAATAATGTTAACAGCATAATAATTAACTAATTAAAATTTAATAATTTAA
1 TAATAATGTTAACAACATAATAATTAACTAATTAAAATTAAATAATATAA
6760186 TAATA
1 TAATA
6760191 TTTTCCTATC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (50 bp):
TAATAATGTTAACAACATAATAATTAACTAATTAAAATTAAATAATATAA
Found at i:6760386 original size:28 final size:28
Alignment explanation
Indices: 6760320--6760386 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
6760310 AAATAATAAT
* * *
6760320 AATTTAGAATTTAGAATAAAAAATCGAG
1 AATTAAGAATTGAGAATAAAAAATCAAG
* * *
6760348 AATTAATAATTGAGAATAAAAATTTAAG
1 AATTAAGAATTGAGAATAAAAAATCAAG
*
6760376 AATTGAGAATT
1 AATTAAGAATT
6760387 AAGTTGAAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.54, C:0.01, G:0.13, T:0.31
Consensus pattern (28 bp):
AATTAAGAATTGAGAATAAAAAATCAAG
Found at i:6761103 original size:44 final size:45
Alignment explanation
Indices: 6761040--6761135 Score: 142
Period size: 44 Copynumber: 2.2 Consensus size: 45
6761030 TTTATAACCC
6761040 AATAAAAGGTAAATAATGTCCTTTCATTGGCATTA-ATGATAGAT
1 AATAAAAGGTAAATAATGTCCTTTCATTGGCATTAGATGATAGAT
* * * *
6761084 AATAAATGGTAAATGATGTCTTTTCATTGGTATTAGATGATAGAT
1 AATAAAAGGTAAATAATGTCCTTTCATTGGCATTAGATGATAGAT
6761129 AA-AAAAG
1 AATAAAAG
6761136 TAACGTGATT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 35 0.76
45 11 0.24
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (45 bp):
AATAAAAGGTAAATAATGTCCTTTCATTGGCATTAGATGATAGAT
Found at i:6771463 original size:125 final size:125
Alignment explanation
Indices: 6771220--6771474 Score: 366
Period size: 125 Copynumber: 2.0 Consensus size: 125
6771210 GATAAAATCA
* * * * *
6771220 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCACACCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAAGATGATTTATCAGAAGAATTTGTGAAATCACACCCACGTGGACGCGCTTTTGCTACAGT
*
6771285 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTATGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTAACGTTTATGAGCAAATAGTTTAAAAAACGCTTC
* * * * *
6771345 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGATGCGCTTTTGCTACAGT
1 AAGCAAGATGATTTATCAGAAGAATTTGTGAAATCACACCCACGTGGACGCGCTTTTGCTACAGT
* * *
6771410 TGGTCCTGGAAGAAATAATTTCGAGTTAACGTTTTTGAGCAAATAGTTTAAAAAAACGCTTC
66 AGGTCCTGGAA-AAATAATTTCGACTTAACGTTTATGAGCAAATAGTTT-AAAAAACGCTTC
6771472 AAG
1 AAG
6771475 NNNNNNNNNN
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
125 65 0.57
126 34 0.30
127 15 0.13
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (125 bp):
AAGCAAGATGATTTATCAGAAGAATTTGTGAAATCACACCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGACTTAACGTTTATGAGCAAATAGTTTAAAAAACGCTTC
Found at i:6777011 original size:127 final size:126
Alignment explanation
Indices: 6776729--6777191 Score: 626
Period size: 126 Copynumber: 3.7 Consensus size: 126
6776719 GATAAAATCA
* * * * * * * *
6776729 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCACACCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
*
6776794 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTATGAGCAAATAGTTT-AAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTATGAGCAAATAGTTTAAAAAAACGCTTC
* *
6776854 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGATGCGCTTTTGCTACAGT
1 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
* * *
6776919 TGGTCCTGGAAGAAATAATTTCGAGTTAACGTTTTTGAGCAAATAGTTTAAAAAAACGCTTC
66 AGGTCCTGGAA-AAATAATTTCGAGTTGACGTTTATGAGCAAATAGTTTAAAAAAACGCTTC
* * * *
6776981 AAGCAAGATGCTTTATAAGAGGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
6777046 AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTATGAGCAAATAGTTTAAAAAAACGCTTC
* * *
6777107 AAGC-AGCATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTAGCTACA
1 AAGCAAG-ATGCT-TTATGAGAAGAATTTGTGAAATCGCACCCACGTGGACGCGCTTTTGCTACA
*
6777170 GTAGGTCCTAGAAAAATAATTT
64 GTAGGTCCTGGAAAAATAATTT
6777192 ACAGTAGGTC
Statistics
Matches: 299, Mismatches: 35, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
125 67 0.22
126 150 0.50
127 82 0.27
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (126 bp):
AAGCAAGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTATGAGCAAATAGTTTAAAAAAACGCTTC
Found at i:6783489 original size:30 final size:31
Alignment explanation
Indices: 6783453--6783520 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
6783443 AGTCTGCATG
* *
6783453 TATGAATTCACTATGATCATGAAG-TTCTTT
1 TATGAATTCACTATGATCATAAAGTTTCTTC
** *
6783483 TATGAATTTGCTATGTTCATAAAGTTTCTTC
1 TATGAATTCACTATGATCATAAAGTTTCTTC
6783514 TATGAAT
1 TATGAAT
6783521 CCGCCTGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 20 0.62
31 12 0.38
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (31 bp):
TATGAATTCACTATGATCATAAAGTTTCTTC
Found at i:6783595 original size:45 final size:45
Alignment explanation
Indices: 6783541--6783649 Score: 130
Period size: 45 Copynumber: 2.4 Consensus size: 45
6783531 GAATCTACTT
* * * * *
6783541 TATCCATGAAGT-TTCTTCTATGAATTTGCATGTATGAGTTTTCCA
1 TATCCATGAA-TCTTCTTCTATAAATCTACATGTATGAGTCTACCA
* * *
6783586 TATCTATGAATCATCTTCAATAAATCTACATGTATGAGTCTACCA
1 TATCCATGAATCTTCTTCTATAAATCTACATGTATGAGTCTACCA
6783631 TATCCATGAATCTTCTTCT
1 TATCCATGAATCTTCTTCT
6783650 TTTGCATGTA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 1 0.02
45 51 0.98
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.41
Consensus pattern (45 bp):
TATCCATGAATCTTCTTCTATAAATCTACATGTATGAGTCTACCA
Found at i:6786497 original size:20 final size:19
Alignment explanation
Indices: 6786458--6786502 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
6786448 GGTAACAATT
6786458 AATATGCTTATAACATATC
1 AATATGCTTATAACATATC
6786477 AAATATGCTTATAACGA-ATC
1 -AATATGCTTATAAC-ATATC
6786497 AATATG
1 AATATG
6786503 GTAACAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.25
20 17 0.71
21 1 0.04
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33
Consensus pattern (19 bp):
AATATGCTTATAACATATC
Found at i:6786532 original size:54 final size:54
Alignment explanation
Indices: 6786427--6786532 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 54
6786417 GCAATATGGC
* * *
6786427 ATGCTTTTAACAAACCAATACGGTAACAATTAATATGCTTATAACATATCAAAT
1 ATGCTTATAACAAACCAATACGGTAACAATTAATATGCTTATAAAAAATCAAAT
* * * * *
6786481 ATGCTTATAACGAATCAATATGGTAACAATTAATATGTTTGTAAAAAATCAA
1 ATGCTTATAACAAACCAATACGGTAACAATTAATATGCTTATAAAAAATCAA
6786533 TACAAGAGCA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.32
Consensus pattern (54 bp):
ATGCTTATAACAAACCAATACGGTAACAATTAATATGCTTATAAAAAATCAAAT
Found at i:6789472 original size:18 final size:18
Alignment explanation
Indices: 6789430--6789475 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
6789420 CTTTCTATAT
* **
6789430 ATATGTATATTTATTTTT
1 ATATATATATTTATTTCC
*
6789448 ATGTATATATTTATTTCC
1 ATATATATATTTATTTCC
6789466 ATATATATAT
1 ATATATATAT
6789476 ACGCATATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (18 bp):
ATATATATATTTATTTCC
Found at i:6789657 original size:107 final size:108
Alignment explanation
Indices: 6789498--6789703 Score: 339
Period size: 107 Copynumber: 1.9 Consensus size: 108
6789488 TAATATAATG
*
6789498 TAATTATTATTTAATTTATTTTTATATATATTTGTATAAATGTATATGTGTATATA-TT-TAT-T
1 TAATTATTATTTAATTTATTTTTATATATATTTGTATAAATGTACATGTGTATATATTTGTATAT
6789560 TTTTAAAACGAATG-TTTTTTCATTTATATATATATATATATGTA
66 TTTT--AACGAATGTTTTTTTCATTTATATATATATATATATGTA
*
6789604 TAATTATTATTTAATTTATTTTATATATATATTTGTATATATGTACATGTGTATATATTTGTATA
1 TAATTATTATTTAATTTATTTT-TATATATATTTGTATAAATGTACATGTGTATATATTTGTATA
6789669 TTTTTAACGAATGTTTTTTTCATTTATATATATAT
65 TTTTTAACGAATGTTTTTTTCATTTATATATATAT
6789704 GTGTATATTT
Statistics
Matches: 93, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
106 22 0.24
107 32 0.34
108 10 0.11
109 24 0.26
110 5 0.05
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (108 bp):
TAATTATTATTTAATTTATTTTTATATATATTTGTATAAATGTACATGTGTATATATTTGTATAT
TTTTAACGAATGTTTTTTTCATTTATATATATATATATATGTA
Found at i:6791491 original size:23 final size:24
Alignment explanation
Indices: 6791438--6791491 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
6791428 CATGTGTTGC
*
6791438 ATATAAATATACATATTTAATTATTT
1 ATAT-AATAAACATATTT-ATTATTT
6791464 -T-TAATAAACATATTT-TTATTT
1 ATATAATAAACATATTTATTATTT
6791485 ATATAAT
1 ATATAAT
6791492 TAATGTATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 6 0.24
22 1 0.04
23 16 0.64
24 1 0.04
25 1 0.04
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
ATATAATAAACATATTTATTATTT
Found at i:6796268 original size:43 final size:44
Alignment explanation
Indices: 6796155--6796269 Score: 103
Period size: 44 Copynumber: 2.6 Consensus size: 44
6796145 GGAGATTTTG
* * * **
6796155 TGTAAGACCATGTCTGGGACGTTGGCATTATTTTGAGATTTATG
1 TGTAAGACCACGTCTGGGACTTTGGCATCATTTTGAGATTTACA
* * *
6796199 TGTAAGACC-CTGTCTGGGA-TAATGGCATCGTTATT-TGA-TTACA
1 TGTAAGACCAC-GTCTGGGACT-TTGGCATCATT-TTGAGATTTACA
6796242 TGTAAGACCACGTCTGGGACTTTGGCAT
1 TGTAAGACCACGTCTGGGACTTTGGCAT
6796270 TGTACGAGCT
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
43 26 0.46
44 29 0.51
45 2 0.04
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACTTTGGCATCATTTTGAGATTTACA
Found at i:6813245 original size:15 final size:14
Alignment explanation
Indices: 6813220--6813257 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
6813210 GTTTGCCAGT
6813220 AAAAT-ATTTTTCGG
1 AAAATGATTTTT-GG
6813234 AAAATGATTTTTGG
1 AAAATGATTTTTGG
6813248 AAAATGATTT
1 AAAATGATTT
6813258 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (14 bp):
AAAATGATTTTTGG
Found at i:6813271 original size:19 final size:19
Alignment explanation
Indices: 6813249--6813286 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
6813239 GATTTTTGGA
6813249 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
6813268 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
6813287 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:6813388 original size:18 final size:18
Alignment explanation
Indices: 6813362--6813404 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
6813352 AAAAGCTGTT
*
6813362 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
6813380 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
6813398 TTTATAT
1 TTTATAT
6813405 TTTAAATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:6813565 original size:14 final size:14
Alignment explanation
Indices: 6813532--6813559 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6813522 CCATAGTCAA
6813532 ATAATAATATTATC
1 ATAATAATATTATC
6813546 ATAATAATATTATC
1 ATAATAATATTATC
6813560 CAAATACGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
ATAATAATATTATC
Found at i:6814631 original size:32 final size:32
Alignment explanation
Indices: 6814585--6814645 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
6814575 TATCAATCAT
6814585 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
6814617 TTCAATATCTAACAAGCTTAAAGCATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
6814646 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:6814670 original size:27 final size:27
Alignment explanation
Indices: 6814618--6814672 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
6814608 CATAATAAAT
*
6814618 TCAATATCTAACAAGCTTAAAGCATAA
1 TCAATATCTAACAAGATTAAAGCATAA
*
6814645 TCAATATCTAACAA-ATTCAAGACATAA
1 TCAATATCTAACAAGATTAAAG-CATAA
6814672 T
1 T
6814673 AATTTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.27
Consensus pattern (27 bp):
TCAATATCTAACAAGATTAAAGCATAA
Found at i:6817827 original size:16 final size:16
Alignment explanation
Indices: 6817803--6817837 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
6817793 AAAACTTTCT
6817803 TCACAACAACTACACA
1 TCACAACAACTACACA
*
6817819 TCACCACAACTACACA
1 TCACAACAACTACACA
6817835 TCA
1 TCA
6817838 AGATTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.14
Consensus pattern (16 bp):
TCACAACAACTACACA
Found at i:6819123 original size:17 final size:17
Alignment explanation
Indices: 6819101--6819140 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
6819091 AATTCTATCA
*
6819101 AAAAAATATTTAAAAAT
1 AAAAAATATATAAAAAT
*
6819118 AAAAAATATATAAAATT
1 AAAAAATATATAAAAAT
6819135 AAAAAA
1 AAAAAA
6819141 ATCTAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (17 bp):
AAAAAATATATAAAAAT
Found at i:6819132 original size:16 final size:16
Alignment explanation
Indices: 6819101--6819165 Score: 55
Period size: 17 Copynumber: 4.1 Consensus size: 16
6819091 AATTCTATCA
*
6819101 AAAAAATATTTAAAAAT
1 AAAAAATATAT-AAAAT
6819118 AAAAAATATATAAAATT
1 AAAAAATATATAAAA-T
*
6819135 AAAAAA-ATCTAAATAT
1 AAAAAATATATAAA-AT
*
6819151 ATAAAAT-TA-AAAAT
1 AAAAAATATATAAAAT
6819165 A
1 A
6819166 TATTTAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
14 3 0.07
15 3 0.07
16 17 0.41
17 18 0.44
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAAATATATAAAAT
Found at i:6819139 original size:24 final size:24
Alignment explanation
Indices: 6819112--6819163 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
6819102 AAAAATATTT
6819112 AAAAATAAAAAATATATAAAATTAA
1 AAAAAT-AAAAATATATAAAATTAA
**
6819137 AAAAATCTAAATATATAAAATTAA
1 AAAAATAAAAATATATAAAATTAA
6819161 AAA
1 AAA
6819164 TATATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (24 bp):
AAAAATAAAAATATATAAAATTAA
Found at i:6824147 original size:23 final size:23
Alignment explanation
Indices: 6824117--6824165 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
6824107 ATTGCAAAGA
6824117 TCAAATTCGAATCGAGTAATAGG
1 TCAAATTCGAATCGAGTAATAGG
6824140 TCAAATTCGAATCGAGTAATAGG
1 TCAAATTCGAATCGAGTAATAGG
6824163 TCA
1 TCA
6824166 TGATTACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (23 bp):
TCAAATTCGAATCGAGTAATAGG
Found at i:6829728 original size:19 final size:20
Alignment explanation
Indices: 6829695--6829732 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
6829685 TTGTTAAAAG
*
6829695 TAAAAATCATTAAAATTATT
1 TAAAAATCATAAAAATTATT
6829715 TAAAAAT-ATAAAAATTAT
1 TAAAAATCATAAAAATTAT
6829733 AAAATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAAATCATAAAAATTATT
Found at i:6835035 original size:16 final size:15
Alignment explanation
Indices: 6835016--6835045 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
6835006 TTCATTAAAA
6835016 AAATTATTTAGATTTT
1 AAATTATTTA-ATTTT
6835032 AAATTATTTAATTT
1 AAATTATTTAATTT
6835046 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
AAATTATTTAATTTT
Found at i:6844573 original size:5 final size:5
Alignment explanation
Indices: 6844557--6844595 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
6844547 GCCTAAGATG
* *
6844557 TGAAT TGGAT TGAAT TGAAT ATGAAT TGTAT TGAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
6844596 GCTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:6848220 original size:25 final size:25
Alignment explanation
Indices: 6848182--6848229 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
6848172 TACAGCCCGA
6848182 ATAAGCTTTCCATTAAATGGCTCAT
1 ATAAGCTTTCCATTAAATGGCTCAT
*
6848207 ATAAGC-TTCTCATTATATGGCTC
1 ATAAGCTTTC-CATTAAATGGCTC
6848230 GAGAGATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (25 bp):
ATAAGCTTTCCATTAAATGGCTCAT
Found at i:6852753 original size:31 final size:32
Alignment explanation
Indices: 6852697--6852757 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
6852687 TATAAAATGA
*
6852697 TCACACAACTATTTGACTTTTTTCTTTTTTGG
1 TCACACAACTATTTGACATTTTTCTTTTTTGG
*
6852729 TCACCCAACTATTTGA-ATTTTTCTTTTTT
1 TCACACAACTATTTGACATTTTTCTTTTTT
6852758 AGTTATCAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 12 0.44
32 15 0.56
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.54
Consensus pattern (32 bp):
TCACACAACTATTTGACATTTTTCTTTTTTGG
Found at i:6861212 original size:18 final size:20
Alignment explanation
Indices: 6861189--6861232 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
6861179 TACTTTAATA
6861189 TTTATGCAA-ATAATTG-TT
1 TTTATGCAATATAATTGATT
* *
6861207 TTTATGGAATATTATTGATT
1 TTTATGCAATATAATTGATT
6861227 TTTATG
1 TTTATG
6861233 AAGCAATAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 6 0.27
20 8 0.36
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.55
Consensus pattern (20 bp):
TTTATGCAATATAATTGATT
Found at i:6872223 original size:30 final size:30
Alignment explanation
Indices: 6872189--6872251 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
6872179 GTAAGGAAAG
*
6872189 TAGTGGAGGATGATAATCGATGGGCTGAGA
1 TAGTGGAGGATGATAATCGATAGGCTGAGA
6872219 TAGTGGAGGATGATAATCGATAGGCTGAGA
1 TAGTGGAGGATGATAATCGATAGGCTGAGA
6872249 TAG
1 TAG
6872252 GGCATCTGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.38, T:0.24
Consensus pattern (30 bp):
TAGTGGAGGATGATAATCGATAGGCTGAGA
Found at i:6875394 original size:42 final size:42
Alignment explanation
Indices: 6875324--6875463 Score: 181
Period size: 42 Copynumber: 3.3 Consensus size: 42
6875314 GTTTTTTCCT
*
6875324 ACAAACGCCGCTATAGATCATGAACTTTAGCGGCGCTTTTAC
1 ACAAACGCCGCTATAGATCAAGAACTTTAGCGGCGCTTTTAC
* * * * **
6875366 ACAAACCCCGCTATAGCTCAGGATCTTTAGCGGCGCTTTTTT
1 ACAAACGCCGCTATAGATCAAGAACTTTAGCGGCGCTTTTAC
* * *
6875408 ACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTGATT
1 ACAAACGCCGCTATAGATCAAGAACTTTAGCGGCGCTTTTA-C
6875451 ACAAACGCCGCTA
1 ACAAACGCCGCTA
6875464 AAAGTACCGT
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 71 0.84
43 14 0.16
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (42 bp):
ACAAACGCCGCTATAGATCAAGAACTTTAGCGGCGCTTTTAC
Found at i:6881911 original size:545 final size:545
Alignment explanation
Indices: 6880784--6882293 Score: 2774
Period size: 545 Copynumber: 2.8 Consensus size: 545
6880774 TTTTTTATAC
* * * * * *
6880784 AATATTGGAGGTTAAATGAGGTAACACAGTTTAAATAAATTTTTAACAAAAACTTTAACCATCAC
1 AATATTGGAGGTGAAATGAGATAACACAATTTAAATAATTTTTTAACGAAAACTTTAACCATCAG
*
6880849 TCTATACAAATTAAGATGCATACTT-ACCAAATGTTATAACTAAAATTTGTTATATCTATAACCT
66 TCTATACAAATTAAGATGCATACTTAACCAAATGTTATAACTAAAATTTGCTATATCTATAACCT
* * * *
6880913 TACATAACTATTTTTTTATACATGGTTGTTATGTCCTAAATTAAAATTTGAAAGCATTATAATGA
131 TACATAAATATTTTTTTATACATGGTTGTTACGTCCTAAATTAAAATTTAAAAGCATTATAGTGA
* * * *
6880978 GTTTGGTTCACTTACATACCTCCACTACCATTTGAAATGAGCACCTTAATTTGAGTTTTCCCACA
196 GTTTGGTTCACTTACATACCTCCACTACCATTTGAAAGGAACACCTTAATTTGCGTCTTCCCACA
* * *
6881043 AATGATCATGTTTTACTTTTTCATAGTGACAGAATTTGTCTAAATTTATTACTAAACATATGCT-
261 AATGACCATGTTTTACTTTTTCATGGTGATAGAATTTGTCTAAATTTATTACTAAACATATGCTA
* * * *
6881107 TCGAGGATTAA-CCCCAAAGTAATACCAAGATATTCGGTACGAAATACATATGCTCAACCAGGTC
326 T-GAGGATTAACCCCCAAAGTAATCCCAAGATATTTGGTACAAAATACTTATGCTCAACCAGGTC
6881171 AATTTACCAGAAAAGGCCTATTTTAAAAAAAAACGAAAATTTTTCTTGATATTTACAGGAATGGC
390 AATTTACCAGAAAAGGCCTATTTTAAAAAAAAACGAAAATTTTTCTTGATATTTACAGGAATGGC
6881236 CTGATTTTTGTAAAACGCGCTAAGTTTGTGTCATTTTCAGGGGAACCAGAAAAGTGCATTTAGCC
455 CTGATTTTTGTAAAACGCGCTAAGTTTGTGTCATTTTCAGGGGAACCAGAAAAGTGCATTTAGCC
6881301 CAGCACTTTTTTCCCCTCTGACCTAT
520 CAGCACTTTTTTCCCCTCTGACCTAT
6881327 AATATTGGAGGTGAAATGAGATAACACAATTTAAATAATTTTTTAACGAAAACTTTAACCATCAG
1 AATATTGGAGGTGAAATGAGATAACACAATTTAAATAATTTTTTAACGAAAACTTTAACCATCAG
6881392 TCTATACAAATTAAGATGCATACTTAACCAAATGTTATAACTAAAATTTGCTATATCTATAACCT
66 TCTATACAAATTAAGATGCATACTTAACCAAATGTTATAACTAAAATTTGCTATATCTATAACCT
6881457 TACATAAATATTTTTTTATACATGGTTGTTACGTCCTAAATTAAAATTTAAAAGCATTATAGTGA
131 TACATAAATATTTTTTTATACATGGTTGTTACGTCCTAAATTAAAATTTAAAAGCATTATAGTGA
6881522 GTTTGGTTCACTTACATACCTCCACTACCATTTGAAAGGAACACCTTAATTTGCGTCTTCCCACA
196 GTTTGGTTCACTTACATACCTCCACTACCATTTGAAAGGAACACCTTAATTTGCGTCTTCCCACA
6881587 AATGACCATGTTTTACTTTTTCATGGTGATAGAATTTGTCTAAATTTATTACTAAACATATGCTA
261 AATGACCATGTTTTACTTTTTCATGGTGATAGAATTTGTCTAAATTTATTACTAAACATATGCTA
6881652 TGAGGATTAACCCCCAAAGTAATCCCAAGATATTTGGTACAAAATACTTATGCTCAACCAGGTCA
326 TGAGGATTAACCCCCAAAGTAATCCCAAGATATTTGGTACAAAATACTTATGCTCAACCAGGTCA
6881717 ATTTACCAGAAAAGGCCTATTTTAAAAAAAAACGAAAATTTTTCTTGATATTTACAGGAATGGCC
391 ATTTACCAGAAAAGGCCTATTTTAAAAAAAAACGAAAATTTTTCTTGATATTTACAGGAATGGCC
6881782 TGATTTTTGTAAAACGCGCTAAGTTTGTGTCATTTTCAGGGGAACCAGAAAAGTGCATTTAGCCC
456 TGATTTTTGTAAAACGCGCTAAGTTTGTGTCATTTTCAGGGGAACCAGAAAAGTGCATTTAGCCC
6881847 AGCACTTTTTTCCCCTCTGACCTAT
521 AGCACTTTTTTCCCCTCTGACCTAT
6881872 AATATTGGAGGTGAAATGAGATAACACAATTTAAATAATTTTTTAACGAAAACTTTAACCATCAG
1 AATATTGGAGGTGAAATGAGATAACACAATTTAAATAATTTTTTAACGAAAACTTTAACCATCAG
6881937 TCTATACAAATTAAGATGCATACTTAACCAAATGTTATAACTAAAATTTGCTATATCTATAACCT
66 TCTATACAAATTAAGATGCATACTTAACCAAATGTTATAACTAAAATTTGCTATATCTATAACCT
6882002 TACATAAATATTTTTTTATACATGGTTGTTACGTCCTAAATTAAAATTTAAAAGCATTATAGTGA
131 TACATAAATATTTTTTTATACATGGTTGTTACGTCCTAAATTAAAATTTAAAAGCATTATAGTGA
6882067 GTTTGGTTCACTTACATACCTCCACTACCATTTGAAAGGAACACCTTAATTTGCGTCTTCCCACA
196 GTTTGGTTCACTTACATACCTCCACTACCATTTGAAAGGAACACCTTAATTTGCGTCTTCCCACA
6882132 AATGACCATGTTTTACTTTTTCATGGTGATAGAATTTGTCTAAATTTATTACTAAACATATGCTA
261 AATGACCATGTTTTACTTTTTCATGGTGATAGAATTTGTCTAAATTTATTACTAAACATATGCTA
6882197 TGAGGATTAACCCCCAAAGTAATCCCAAGATATTTGGTACAAAATACTTATGCTCAACCAGGTCA
326 TGAGGATTAACCCCCAAAGTAATCCCAAGATATTTGGTACAAAATACTTATGCTCAACCAGGTCA
* *
6882262 ATTTACCAGAAAATGCCTATTTTCAAAAAAAA
391 ATTTACCAGAAAAGGCCTATTTTAAAAAAAAA
6882294 TTACAGAAGT
Statistics
Matches: 940, Mismatches: 24, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
543 84 0.09
544 230 0.24
545 626 0.67
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (545 bp):
AATATTGGAGGTGAAATGAGATAACACAATTTAAATAATTTTTTAACGAAAACTTTAACCATCAG
TCTATACAAATTAAGATGCATACTTAACCAAATGTTATAACTAAAATTTGCTATATCTATAACCT
TACATAAATATTTTTTTATACATGGTTGTTACGTCCTAAATTAAAATTTAAAAGCATTATAGTGA
GTTTGGTTCACTTACATACCTCCACTACCATTTGAAAGGAACACCTTAATTTGCGTCTTCCCACA
AATGACCATGTTTTACTTTTTCATGGTGATAGAATTTGTCTAAATTTATTACTAAACATATGCTA
TGAGGATTAACCCCCAAAGTAATCCCAAGATATTTGGTACAAAATACTTATGCTCAACCAGGTCA
ATTTACCAGAAAAGGCCTATTTTAAAAAAAAACGAAAATTTTTCTTGATATTTACAGGAATGGCC
TGATTTTTGTAAAACGCGCTAAGTTTGTGTCATTTTCAGGGGAACCAGAAAAGTGCATTTAGCCC
AGCACTTTTTTCCCCTCTGACCTAT
Found at i:6883991 original size:29 final size:28
Alignment explanation
Indices: 6883945--6884001 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
6883935 TTCTCGTAAA
* * *
6883945 TTAAAAAAAAGTCTATTTTTGTAATATTT
1 TTAAAAAAAAGACCATTTTT-TAAAATTT
*
6883974 TTAAAAAAATGACCATTTTTTAAAATTT
1 TTAAAAAAAAGACCATTTTTTAAAATTT
6884002 AATCAGAGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (28 bp):
TTAAAAAAAAGACCATTTTTTAAAATTT
Found at i:6885715 original size:42 final size:42
Alignment explanation
Indices: 6885645--6885784 Score: 181
Period size: 42 Copynumber: 3.3 Consensus size: 42
6885635 GTTTTTTCCT
*
6885645 ACAAACGCCGCTATAGATCATGAACTTTAGCGGCGCTTTTAC
1 ACAAACGCCGCTATAGATCAAGAACTTTAGCGGCGCTTTTAC
* * * * **
6885687 ACAAACCCCGCTATAGCTCAGGATCTTTAGCGGCGCTTTTTT
1 ACAAACGCCGCTATAGATCAAGAACTTTAGCGGCGCTTTTAC
* * *
6885729 ACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTGATT
1 ACAAACGCCGCTATAGATCAAGAACTTTAGCGGCGCTTTTA-C
6885772 ACAAACGCCGCTA
1 ACAAACGCCGCTA
6885785 AAAGTACCGT
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 71 0.84
43 14 0.16
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (42 bp):
ACAAACGCCGCTATAGATCAAGAACTTTAGCGGCGCTTTTAC
Found at i:6890032 original size:66 final size:65
Alignment explanation
Indices: 6889938--6890108 Score: 209
Period size: 66 Copynumber: 2.6 Consensus size: 65
6889928 GAGCAAATTA
* * * * *
6889938 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGATGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCA
6890002 G
65 G
*
6890003 CTACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
6890068 G
65 G
* * * * *
6890069 CAGCAGCTTAGAGCAGATGCGGCAGCAAGAGAAGCAGAGG
1 CA-CAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGG
6890109 CGGCAGCGAG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
65 2 0.02
66 86 0.93
67 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.27, T:0.13
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:6890106 original size:21 final size:21
Alignment explanation
Indices: 6890080--6890191 Score: 98
Period size: 21 Copynumber: 5.3 Consensus size: 21
6890070 AGCAGCTTAG
*
6890080 AGCAGATGCGGCAGCAAGAGA
1 AGCAGAGGCGGCAGCAAGAGA
*
6890101 AGCAGAGGCGGCAGCGAGAGA
1 AGCAGAGGCGGCAGCAAGAGA
* * * *
6890122 AGAACAGGCTGCAGCAAGGGA
1 AGCAGAGGCGGCAGCAAGAGA
*** * *
6890143 AGCAGAGGCTAAAGCGAGGGA
1 AGCAGAGGCGGCAGCAAGAGA
* * *
6890164 AGCAGAGGCTGCAGCGAGGGA
1 AGCAGAGGCGGCAGCAAGAGA
6890185 AGCAGAG
1 AGCAGAG
6890192 CAGCGTCAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 77 1.00
ACGTcount: A:0.36, C:0.18, G:0.43, T:0.04
Consensus pattern (21 bp):
AGCAGAGGCGGCAGCAAGAGA
Found at i:6890136 original size:42 final size:42
Alignment explanation
Indices: 6890090--6890191 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
6890080 AGCAGATGCG
* **
6890090 GCAGCAAGAGAAGCAGAGGCGGCAGCGAGAGAAGAACAGGCT
1 GCAGCAAGGGAAGCAGAGGCGAAAGCGAGAGAAGAACAGGCT
* * * *
6890132 GCAGCAAGGGAAGCAGAGGCTAAAGCGAGGGAAGCAGAGGCT
1 GCAGCAAGGGAAGCAGAGGCGAAAGCGAGAGAAGAACAGGCT
*
6890174 GCAGCGAGGGAAGCAGAG
1 GCAGCAAGGGAAGCAGAG
6890192 CAGCGTCAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.36, C:0.18, G:0.43, T:0.03
Consensus pattern (42 bp):
GCAGCAAGGGAAGCAGAGGCGAAAGCGAGAGAAGAACAGGCT
Found at i:6890612 original size:43 final size:43
Alignment explanation
Indices: 6890560--6890704 Score: 172
Period size: 43 Copynumber: 3.4 Consensus size: 43
6890550 CGTTTTTGGG
* *
6890560 AAAAGCGCCGCTAAAGGCCATGATCTATAGCGGCGCTTATATA
1 AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTATATA
*
6890603 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTT-TCA-A
1 AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTAT-ATA
* * *
6890645 CAAAAACGCCGCTAAAGACACCA--ATCTGTAGCGGCGGTTATATT
1 -AAAAACGCCGCTAAAG--ACCATGATCTATAGCGGCGCTTATATA
6890689 AAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
6890705 CTCTTAGTCT
Statistics
Matches: 89, Mismatches: 7, Indels: 12
0.82 0.06 0.11
Matches are distributed among these distances:
42 2 0.02
43 83 0.93
44 1 0.01
45 3 0.03
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTATATA
Found at i:6896965 original size:2 final size:2
Alignment explanation
Indices: 6896958--6896988 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6896948 CTAATTCTAA
6896958 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6896989 AATGCATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6903144 original size:2 final size:2
Alignment explanation
Indices: 6903137--6903176 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
6903127 ATGCTTCTTA
6903137 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
6903177 ATGGAATTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:6908321 original size:22 final size:22
Alignment explanation
Indices: 6908291--6908333 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6908281 ACACCAAAAC
* *
6908291 AGGCTTTTAGCAGCGTTTTTTT
1 AGGCCTTTAGCAGCGCTTTTTT
*
6908313 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCAGCGCTTTTT
6908334 AGCGCCGCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.19, G:0.26, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCAGCGCTTTTTT
Found at i:6908475 original size:43 final size:43
Alignment explanation
Indices: 6908427--6908608 Score: 260
Period size: 43 Copynumber: 4.3 Consensus size: 43
6908417 TTATGATAAA
6908427 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
*
6908470 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTA-CCATC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCA-C
* * *
6908513 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACGTTACCCAA
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
* * * * *
6908556 AAACGCCGCTAAAGATCAAGACCTTTAGCGACGCTTT-CTCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
6908598 AAACGCCGCTA
1 AAACGCCGCTA
6908609 TAAATCACAA
Statistics
Matches: 124, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
42 17 0.14
43 104 0.84
44 3 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
Found at i:6908622 original size:42 final size:42
Alignment explanation
Indices: 6908556--6908696 Score: 180
Period size: 42 Copynumber: 3.3 Consensus size: 42
6908546 CGTTACCCAA
* *
6908556 AAACGCCGCTAAAGATCAAGACCTTTAGCGACGCTTT-CTCAC
1 AAACGCCGCTAAA-ATCAAGACCTTTAGCGACGCTTTGATTAC
6908598 AAACGCCGCTATAAATCACA-ACCTTTAGCGACGCTTTGATTAC
1 AAACGCCGCTA-AAATCA-AGACCTTTAGCGACGCTTTGATTAC
*
6908641 AAACGCCAC-AAAAGCTCAAGACCTTTTAGCGACGCTTTGATTAC
1 AAACGCCGCTAAAA--TCAAGACC-TTTAGCGACGCTTTGATTAC
6908685 AAACGCCGCTAA
1 AAACGCCGCTAA
6908697 CTTTTTAAAA
Statistics
Matches: 87, Mismatches: 4, Indels: 13
0.84 0.04 0.12
Matches are distributed among these distances:
41 3 0.03
42 34 0.39
43 20 0.23
44 28 0.32
45 2 0.02
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (42 bp):
AAACGCCGCTAAAATCAAGACCTTTAGCGACGCTTTGATTAC
Found at i:6919069 original size:41 final size:40
Alignment explanation
Indices: 6919003--6919119 Score: 146
Period size: 41 Copynumber: 2.9 Consensus size: 40
6918993 AAAAAAATTT
*
6919003 GCGGCGCTTTTTCAAAAACGTCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTTT-AAAAACGCCGCTAAAGCCCTGAGCATTA
*
6919044 GTGGCGCTTTTTAAAAAGCGCCGCTAAAGACCC-GAGCATTA
1 GCGGCGCTTTTTAAAAA-CGCCGCTAAAG-CCCTGAGCATTA
* * *
6919085 GCGGCGCTTCTTCAAAAATGCCGCTAACGCCCTGA
1 GCGGCGCTT-TTTAAAAACGCCGCTAAAGCCCTGA
6919120 AAACTCAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
40 8 0.12
41 48 0.73
42 10 0.15
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
GCGGCGCTTTTTAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:6919200 original size:39 final size:38
Alignment explanation
Indices: 6919151--6919288 Score: 141
Period size: 40 Copynumber: 3.5 Consensus size: 38
6919141 TGTGCTTCAG
* ** * *
6919151 TTTTTTGCGGCGCTTTTTGGAAAACGCCGCTAATGCTCA
1 TTTTTAGCGGCG-TTTTTTAAAAACGCCGCTAATACTGA
*
6919190 TTTTTAGCGGCGTTTTCCTAAAAACGCCGCTAATACTGGA
1 TTTTTAGCGGCGTTTT-TTAAAAACGCCGCTAATACT-GA
* * * *
6919230 TCTTTAGCGGCGTTTTTTCTAAAGCGCCTCTAATACTTGA
1 TTTTTAGCGGCGTTTTTT-AAAAACGCCGCTAATAC-TGA
6919270 TTTTTAGCGGCGTTTTTTA
1 TTTTTAGCGGCGTTTTTTA
6919289 TCCAAACGCC
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
38 4 0.05
39 28 0.34
40 49 0.60
41 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (38 bp):
TTTTTAGCGGCGTTTTTTAAAAACGCCGCTAATACTGA
Found at i:6919286 original size:40 final size:41
Alignment explanation
Indices: 6919171--6919287 Score: 150
Period size: 40 Copynumber: 2.9 Consensus size: 41
6919161 CGCTTTTTGG
* * *
6919171 AAAACGCCGCTAATGCT-CATTTTTAGCGGCG-TTTTCCTA
1 AAAACGCCGCTAATACTGGATTTTTAGCGGCGTTTTTTCTA
*
6919210 AAAACGCCGCTAATACTGGATCTTTAGCGGCGTTTTTTCT-
1 AAAACGCCGCTAATACTGGATTTTTAGCGGCGTTTTTTCTA
* * *
6919250 AAAGCGCCTCTAATACTTGATTTTTAGCGGCGTTTTTT
1 AAAACGCCGCTAATACTGGATTTTTAGCGGCGTTTTTT
6919288 ATCCAAACGC
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 16 0.24
40 46 0.68
41 6 0.09
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (41 bp):
AAAACGCCGCTAATACTGGATTTTTAGCGGCGTTTTTTCTA
Found at i:6919541 original size:18 final size:18
Alignment explanation
Indices: 6919518--6919552 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6919508 ATAAAATAAT
*
6919518 TCTTTAACATTTTAAAAG
1 TCTTTAAAATTTTAAAAG
6919536 TCTTTAAAATTTTAAAA
1 TCTTTAAAATTTTAAAA
6919553 TTACTCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (18 bp):
TCTTTAAAATTTTAAAAG
Found at i:6927991 original size:14 final size:13
Alignment explanation
Indices: 6927972--6928002 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
6927962 AAAAAATGAA
6927972 AAAAATGAAAAATG
1 AAAAATG-AAAATG
6927986 AAAAATGAAAATG
1 AAAAATGAAAATG
6927999 AAAA
1 AAAA
6928003 TTGAGAGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAAATGAAAATG
Found at i:6928003 original size:6 final size:7
Alignment explanation
Indices: 6927972--6928002 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
6927962 AAAAAATGAA
6927972 AAAAATG
1 AAAAATG
6927979 AAAAATG
1 AAAAATG
6927986 AAAAATG
1 AAAAATG
6927993 -AAAATG
1 AAAAATG
6927999 AAAA
1 AAAA
6928003 TTGAGAGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAAATG
Found at i:6929337 original size:44 final size:44
Alignment explanation
Indices: 6929284--6929640 Score: 213
Period size: 44 Copynumber: 7.7 Consensus size: 44
6929274 GAAATTACAG
*
6929284 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * * ** *
6929328 ATCCTATCTCCCTGAGATTACAGTAGAGCGGATT-AAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGTA
* * *
6929372 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGATGGAAGCTAGAA
1 ATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAGCTAGTA
* * *
6929426 ATCTTATCTCCCTGATATTACAGCGGAGCAGATTGAAACTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * * *
6929470 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAG-TAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGTA
* * *
6929514 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAA
1 ATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAGCTAGTA
* *
6929568 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATGGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* **
6929612 ATCCTATCTCCCTGAGATTGTAGTGGAGC
1 ATCTTATCTCCCTGAGATTACAGTGGAGC
6929641 GGATCAAAAT
Statistics
Matches: 239, Mismatches: 42, Indels: 64
0.69 0.12 0.19
Matches are distributed among these distances:
43 6 0.03
44 152 0.64
45 4 0.02
47 3 0.01
49 8 0.03
51 4 0.02
53 4 0.02
54 53 0.22
55 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
Found at i:6929491 original size:98 final size:97
Alignment explanation
Indices: 6929312--6929493 Score: 215
Period size: 98 Copynumber: 1.9 Consensus size: 97
6929302 TACAGCGGAG
* * * * * *
6929312 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCTT
1 CAGATGGAAGCTAGAAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTAAAAT-AAGAATCCT
*
6929377 ATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
65 ATCTCCCTGAAGTTACAGTAGAGTAGATCGCAT
* * * *
6929410 CAGATGGAAGCTAGAAATCTTATCTCCCTGATATTACAGCGGAGCAGATTGAAACT-AGTAATCC
1 CAGATGGAAGCTAGAAATCCTATCTCCCTGAGATTACAGCAGAGCAGATT-AAAATAAG-AATCC
6929474 TATCTCCCTG-AGATTACAGT
64 TATCTCCCTGAAG-TTACAGT
6929494 GGAGCGGATT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
97 4 0.06
98 62 0.89
99 4 0.06
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (97 bp):
CAGATGGAAGCTAGAAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTAAAATAAGAATCCTA
TCTCCCTGAAGTTACAGTAGAGTAGATCGCAT
Found at i:6929528 original size:142 final size:142
Alignment explanation
Indices: 6929284--6929696 Score: 709
Period size: 142 Copynumber: 2.9 Consensus size: 142
6929274 GAAATTACAG
6929284 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
*
6929349 AGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
*
6929414 TGGAAGCTAGAA
131 TGGAAGCCAGAA
* *
6929426 ATCTTATCTCCCTGATATTACAGCGGAGCAGATTGAAACTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
*
6929491 AGTGGAGCGGATTAAAGTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
*
6929556 TTGAAGCCAGAA
131 TGGAAGCCAGAA
* * * **
6929568 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTGT
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
6929633 AGTGGAGCGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAG
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
6929697 GTCTTATCTC
Statistics
Matches: 255, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
142 255 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (142 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
TGGAAGCCAGAA
Found at i:6929831 original size:50 final size:50
Alignment explanation
Indices: 6929772--6930063 Score: 223
Period size: 50 Copynumber: 5.8 Consensus size: 50
6929762 GTAGTGCAAT
* *
6929772 AGATTAAAGCCACAATGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * ** *
6929822 AGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
** * * *
6929872 AGATTAAAGCCACATTGGTGAATCTTGCCT-CCCGAACATTGCGGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCG-ACATTGCAGTTAAAA
* * * * * * * ** **
6929922 AGACTAAAGCCACAGCGGCGAGTGTTACTTCCCTGGCGA-TGCAGTGGAGT
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGAC-ATTGCAGTTAAAA
* * * **
6929972 AGATTAAAGCCACAATGGCGTA-CTCTGCTTCCTCGACATTGCAG-TAGAGC
1 AGATTAAAGCCACAACGGCGAATCT-TGCTTCCCCGACATTGCAGTTA-AAA
*
6930022 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGC
6930064 GGTGGAGTGG
Statistics
Matches: 178, Mismatches: 57, Indels: 14
0.71 0.23 0.06
Matches are distributed among these distances:
49 5 0.03
50 167 0.94
51 6 0.03
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:6930071 original size:100 final size:98
Alignment explanation
Indices: 6929771--6930054 Score: 338
Period size: 100 Copynumber: 2.8 Consensus size: 98
6929761 TGTAGTGCAA
*
6929771 TAGATTAAAGCCACAATGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACA
1 TAGATTAAAGCCACAATGGTGAATCTTGCTT-CCCGACATTGCAGTTAAAAAGATTAAAGCCACA
* *
6929836 ACAGCGAATCTTACTTCCCTGGCAGTGCAGTGGAA
65 ACGGCGAATCTTACTTCCCTGGCA-TGCAGTGGAG
* * * * *
6929871 CAGATTAAAGCCACATTGGTGAATCTTGCCTCCCGAACATTGCGGTTAAAAAGACTAAAGCCACA
1 TAGATTAAAGCCACAATGGTGAATCTTGCTTCCCG-ACATTGCAGTTAAAAAGATTAAAGCCACA
* * *
6929936 GCGGCGAGTGTTACTTCCCTGGCGATGCAGTGGAG
65 ACGGCGAATCTTACTTCCCTGGC-ATGCAGTGGAG
* * **
6929971 TAGATTAAAGCCACAATGGCGTA-CTCTGCTTCCTCGACATTGCAG-TAGAGCAGATTAAAGCCA
1 TAGATTAAAGCCACAATGGTGAATCT-TGCTTCC-CGACATTGCAGTTA-AAAAGATTAAAGCCA
* *
6930034 CAACGGTGAATCTTGCTTCCC
63 CAACGGCGAATCTTACTTCCC
6930055 CGACATTGCG
Statistics
Matches: 154, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
99 8 0.05
100 143 0.93
101 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (98 bp):
TAGATTAAAGCCACAATGGTGAATCTTGCTTCCCGACATTGCAGTTAAAAAGATTAAAGCCACAA
CGGCGAATCTTACTTCCCTGGCATGCAGTGGAG
Found at i:6930278 original size:13 final size:12
Alignment explanation
Indices: 6930260--6930310 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
6930250 TGCCCGGTCC
6930260 AAATAAATAAACA
1 AAATAAATAAA-A
6930273 AAATAAA-AAAA
1 AAATAAATAAAA
6930284 TAAAT-AATAAAA
1 -AAATAAATAAAA
6930296 ATAATAAATATAAA
1 A-AATAAATA-AAA
6930310 A
1 A
6930311 CCAAAATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
11 4 0.12
12 14 0.42
13 11 0.33
14 4 0.12
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (12 bp):
AAATAAATAAAA
Found at i:6930284 original size:21 final size:22
Alignment explanation
Indices: 6930260--6930309 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
6930250 TGCCCGGTCC
6930260 AAATAAATAA-ACAAAATAA-AA
1 AAATAAATAATA-AAAATAATAA
6930281 AAATAAATAATAAAAATAATAA
1 AAATAAATAATAAAAATAATAA
*
6930303 ATATAAA
1 AAATAAA
6930310 ACCAAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (22 bp):
AAATAAATAATAAAAATAATAA
Found at i:6930294 original size:15 final size:16
Alignment explanation
Indices: 6930274--6930310 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
6930264 AAATAAACAA
6930274 AATAAAAA-AATAAAT
1 AATAAAAATAATAAAT
6930289 AATAAAAATAATAAAT
1 AATAAAAATAATAAAT
6930305 -ATAAAA
1 AATAAAA
6930311 CCAAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAAAAATAATAAAT
Found at i:6931096 original size:256 final size:258
Alignment explanation
Indices: 6930641--6931154 Score: 1014
Period size: 256 Copynumber: 2.0 Consensus size: 258
6930631 AATCGAAAAA
6930641 AAGAGAGAGGATTTTTTATTATTATTTTTTCGTTTCGGCTATAAAAGAGCCAAGGAAATATGTAA
1 AAGAGAGAGGATTTTTTATTATTATTTTTTCGTTTCGGCTATAAAAGAGCCAAGGAAATATGTAA
6930706 AAATTTCCTTTTTTTTTTCAGACAGACGCATATTGTATTACACACAATATCAATAGAAAAATAGA
66 AAATTTCCTTTTTTTTTTCAGACAGACGCATATTGTATTACACACAATATCAATAGAAAAATAGA
6930771 GTTTTTTTTTGTTTTAGAAGGTGATTTCATTTTTTCTTCGCATTTCTTTGTTCTTTTTCTCGGCT
131 GTTTTTTTTTGTTTTAGAAGGTGATTTCATTTTTTCTTCGCATTTCTTTGTTCTTTTTCTCGGCT
6930836 CTTTTATTCATTAGCAATAAGGTAATAAAAGAGAAAATAAGGTGAGAAGG-A-AGGAGTTTAC
196 CTTTTATTCATTAGCAATAAGGTAATAAAAGAGAAAATAAGGTGAGAAGGAAGAGGAGTTTAC
6930897 AAGAGAGAGGATTTTTTATTATTATTTTTTCGTTTCGGCTATAAAAGAGCCAAGGAAATATGTAA
1 AAGAGAGAGGATTTTTTATTATTATTTTTTCGTTTCGGCTATAAAAGAGCCAAGGAAATATGTAA
6930962 AAATTTCCTTTTTTTTTTCAGACAGACGCATATTGTATTACACACAATATCAATAGAAAAATAGA
66 AAATTTCCTTTTTTTTTTCAGACAGACGCATATTGTATTACACACAATATCAATAGAAAAATAGA
6931027 GTTTTTTTTTGTTTTAGAAGGTGATTTCATTTTTTCTTCGCATTTCTTTGTTCTTTTTCTCGGCT
131 GTTTTTTTTTGTTTTAGAAGGTGATTTCATTTTTTCTTCGCATTTCTTTGTTCTTTTTCTCGGCT
6931092 CTTTTATTCATTAGCAATAAGGTAATAAAAGAGAAAATAAGGTGAGAAGGAAGAGGAGTTTAC
196 CTTTTATTCATTAGCAATAAGGTAATAAAAGAGAAAATAAGGTGAGAAGGAAGAGGAGTTTAC
6931155 CTGGAGGCCA
Statistics
Matches: 256, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
256 245 0.96
257 1 0.00
258 10 0.04
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (258 bp):
AAGAGAGAGGATTTTTTATTATTATTTTTTCGTTTCGGCTATAAAAGAGCCAAGGAAATATGTAA
AAATTTCCTTTTTTTTTTCAGACAGACGCATATTGTATTACACACAATATCAATAGAAAAATAGA
GTTTTTTTTTGTTTTAGAAGGTGATTTCATTTTTTCTTCGCATTTCTTTGTTCTTTTTCTCGGCT
CTTTTATTCATTAGCAATAAGGTAATAAAAGAGAAAATAAGGTGAGAAGGAAGAGGAGTTTAC
Found at i:6937961 original size:28 final size:27
Alignment explanation
Indices: 6937930--6937983 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
6937920 TTAAAATCGG
*
6937930 TTTAAAATTTATAAGAA-ATTATTAAAAA
1 TTTAAAATTAATAA-AATATT-TTAAAAA
6937958 TTTAAAATTAATAAAATATTTTAAAA
1 TTTAAAATTAATAAAATATTTTAAAA
6937984 CAATATTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (27 bp):
TTTAAAATTAATAAAATATTTTAAAAA
Found at i:6937967 original size:17 final size:19
Alignment explanation
Indices: 6937945--6937983 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
6937935 AATTTATAAG
*
6937945 AAATTATTAAAA-A-TTTA
1 AAATTAATAAAATATTTTA
6937962 AAATTAATAAAATATTTTA
1 AAATTAATAAAATATTTTA
6937981 AAA
1 AAA
6937984 CAATATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 1 0.05
19 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTAATAAAATATTTTA
Found at i:6938617 original size:17 final size:15
Alignment explanation
Indices: 6938597--6938639 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
6938587 TATTATTAAA
*
6938597 AAATATTTATTTATTT
1 AAATATTTAATT-TTT
*
6938613 GAAATTTTTAATTTTT
1 -AAATATTTAATTTTT
6938629 AAATATTTAAT
1 AAATATTTAAT
6938640 GACACAACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 3 0.13
17 10 0.43
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
AAATATTTAATTTTT
Found at i:6940826 original size:3 final size:3
Alignment explanation
Indices: 6940818--6940849 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
6940808 GTGATGTGTC
*
6940818 AGA AGA AGA AGA AGA AGA AGA AGA GGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
6940850 GGGTATGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:6943184 original size:2 final size:2
Alignment explanation
Indices: 6943177--6943209 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6943167 CCTTGTGGAT
6943177 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
6943210 TTTCTCGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:6955090 original size:2 final size:2
Alignment explanation
Indices: 6955083--6955107 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6955073 CAGGAAAGGG
6955083 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
6955108 AAGCAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:6959576 original size:20 final size:20
Alignment explanation
Indices: 6959551--6959593 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6959541 ATATTCTAAC
* *
6959551 TTTTTTT-AATAAATATTAA
1 TTTTTTTCAAAAAATATAAA
6959570 TTTTTTTCAAAAAATATAAA
1 TTTTTTTCAAAAAATATAAA
6959590 TTTT
1 TTTT
6959594 AAAAGTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTTTTCAAAAAATATAAA
Found at i:6959758 original size:21 final size:21
Alignment explanation
Indices: 6959701--6959767 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
6959691 TTAAAAATTG
*
6959701 AAATTTTTTTTAAAAATCAAA
1 AAATTTTTTTTAAAATTCAAA
** **
6959722 AAATATTTTTAAAAAATTTTAA
1 AAAT-TTTTTTTAAAATTCAAA
* *
6959744 TAATTTTTTTTAAAATTAAAA
1 AAATTTTTTTTAAAATTCAAA
6959765 AAA
1 AAA
6959768 GTATATATTT
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
21 19 0.56
22 15 0.44
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (21 bp):
AAATTTTTTTTAAAATTCAAA
Found at i:6960989 original size:20 final size:20
Alignment explanation
Indices: 6960964--6961006 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6960954 ATATTCTAAC
* *
6960964 TTTTTTT-AATAAATATTAA
1 TTTTTTTCAAAAAATATAAA
6960983 TTTTTTTCAAAAAATATAAA
1 TTTTTTTCAAAAAATATAAA
6961003 TTTT
1 TTTT
6961007 AAAAGTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTTTTCAAAAAATATAAA
Found at i:6961171 original size:21 final size:21
Alignment explanation
Indices: 6961114--6961180 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
6961104 TTAAAAATTG
*
6961114 AAATTTTTTTTAAAAATCAAA
1 AAATTTTTTTTAAAATTCAAA
** **
6961135 AAATATTTTTAAAAAATTTTAA
1 AAAT-TTTTTTTAAAATTCAAA
* *
6961157 TAATTTTTTTTAAAATTAAAA
1 AAATTTTTTTTAAAATTCAAA
6961178 AAA
1 AAA
6961181 GTATATATTT
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
21 19 0.56
22 15 0.44
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (21 bp):
AAATTTTTTTTAAAATTCAAA
Found at i:6962411 original size:20 final size:20
Alignment explanation
Indices: 6962386--6962428 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6962376 ATATTCTAAC
* *
6962386 TTTTTTT-AATAAATATTAA
1 TTTTTTTCAAAAAATATAAA
6962405 TTTTTTTCAAAAAATATAAA
1 TTTTTTTCAAAAAATATAAA
6962425 TTTT
1 TTTT
6962429 AAAAGTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTTTTCAAAAAATATAAA
Found at i:6962593 original size:21 final size:21
Alignment explanation
Indices: 6962536--6962602 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
6962526 TTAAAAATTG
*
6962536 AAATTTTTTTTAAAAATCAAA
1 AAATTTTTTTTAAAATTCAAA
** **
6962557 AAATATTTTTAAAAAATTTTAA
1 AAAT-TTTTTTTAAAATTCAAA
* *
6962579 TAATTTTTTTTAAAATTAAAA
1 AAATTTTTTTTAAAATTCAAA
6962600 AAA
1 AAA
6962603 GTATATATTT
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
21 19 0.56
22 15 0.44
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (21 bp):
AAATTTTTTTTAAAATTCAAA
Found at i:6963559 original size:20 final size:22
Alignment explanation
Indices: 6963536--6963581 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
6963526 TCGGGGCATT
6963536 TTTAATATGTT-TATA-ATTTA
1 TTTAATATGTTATATATATTTA
* *
6963556 TTTAATTTGTTATATATTTTTA
1 TTTAATATGTTATATATATTTA
6963578 TTTA
1 TTTA
6963582 GTTTGGAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
21 4 0.18
22 8 0.36
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (22 bp):
TTTAATATGTTATATATATTTA
Found at i:6967167 original size:4 final size:4
Alignment explanation
Indices: 6967160--6967186 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6967150 AACAAACACG
6967160 TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA
6967187 TACAATTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:6967371 original size:111 final size:112
Alignment explanation
Indices: 6967251--6967572 Score: 374
Period size: 113 Copynumber: 2.9 Consensus size: 112
6967241 AATAAAAAAG
* * **
6967251 AAATAAGTAAATATTAA-TATTAATAATAGGATAACATGTAAT-C-TAAAGTTACAAAAA-ATGT
1 AAATAAGTAAATATTAAGTA--AA-AATAGAATAACA-GTAATACTTAAAGGTACAAAAAGACAT
*
6967312 AAGT-AAT-TACA-TAATAATAATATATAATAAGACAAAAATATTTAAAATTT
62 AAATAAATATA-AGTAATAA-AATATATAATAAGACAAAAATATTTAAAATTT
* * * *
6967362 AAATAAGTAAATA-TAAGTAAAAATATAATAATAGTAATACTTTGAAGGTATAAAAAGACATAAA
1 AAATAAGTAAATATTAAGTAAAAATAGAATAACAGTAATAC-TTAAAGGTACAAAAAGACATAAA
6967426 TAAATAGTAAGTAATAAAATATATAATAAGACAAAAATATTTAAAATTT
65 TAAATA-TAAGTAATAAAATATATAATAAGACAAAAATATTTAAAATTT
* * * *
6967475 AAATAAGTAAATA-TAAGTAAAAATATAATAATAGTAATACTTTGAAGGTATAAAAAGACATAAA
1 AAATAAGTAAATATTAAGTAAAAATAGAATAACAGTAATAC-TTAAAGGTACAAAAAGACATAAA
6967539 TAAATAGTAAGTAATAAAATATATAATAAGACAA
65 TAAATA-TAAGTAATAAAATATATAATAAGACAA
6967573 TTATGTACGC
Statistics
Matches: 193, Mismatches: 9, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
107 5 0.03
108 10 0.05
109 2 0.01
110 14 0.07
111 20 0.10
112 3 0.02
113 131 0.68
114 8 0.04
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.30
Consensus pattern (112 bp):
AAATAAGTAAATATTAAGTAAAAATAGAATAACAGTAATACTTAAAGGTACAAAAAGACATAAAT
AAATATAAGTAATAAAATATATAATAAGACAAAAATATTTAAAATTT
Found at i:6967451 original size:37 final size:37
Alignment explanation
Indices: 6967410--6967571 Score: 102
Period size: 37 Copynumber: 4.3 Consensus size: 37
6967400 ACTTTGAAGG
6967410 TATAAAAAGACATAAATAAATAGTAAGTAATAAAATA
1 TATAAAAAGACATAAATAAATAGTAAGTAATAAAATA
* * * * *
6967447 TATAATAAGACAAAAATATTTAAAATTTAAATAAGT-AAATA
1 TATAAAAAGACATAAATA---AATA-GTAAGTAA-TAAAATA
* * ** **
6967488 TA-AGTAAA-A-ATATAAT-AATAGTAA-TACTTTGAAGG
1 TATA-AAAAGACATA-AATAAATAGTAAGTA-ATAAAATA
6967523 TATAAAAAGACATAAATAAATAGTAAGTAATAAAATA
1 TATAAAAAGACATAAATAAATAGTAAGTAATAAAATA
*
6967560 TATAATAAGACA
1 TATAAAAAGACA
6967572 ATTATGTACG
Statistics
Matches: 90, Mismatches: 21, Indels: 28
0.65 0.15 0.20
Matches are distributed among these distances:
34 3 0.03
35 10 0.11
36 8 0.09
37 41 0.46
38 2 0.02
39 2 0.02
40 8 0.09
41 15 0.17
42 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.28
Consensus pattern (37 bp):
TATAAAAAGACATAAATAAATAGTAAGTAATAAAATA
Found at i:6967462 original size:18 final size:18
Alignment explanation
Indices: 6967410--6967465 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
6967400 ACTTTGAAGG
* *
6967410 TATAAAAAGACATAAATA
1 TATAATAAGACAAAAATA
* *
6967428 AATAGTAAGTA-ATAAAATA
1 TATAATAAG-ACA-AAAATA
6967447 TATAATAAGACAAAAATA
1 TATAATAAGACAAAAATA
6967465 T
1 T
6967466 TTAAAATTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
18 15 0.52
19 14 0.48
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.25
Consensus pattern (18 bp):
TATAATAAGACAAAAATA
Found at i:6967466 original size:113 final size:113
Alignment explanation
Indices: 6967323--6967572 Score: 491
Period size: 113 Copynumber: 2.2 Consensus size: 113
6967313 AGTAATTACA
6967323 TAATAATAATATATAATAAGACAAAAATATTTAAAATTTAAATAAGTAAATATAAGTAAAAATAT
1 TAATAA-AATATATAATAAGACAAAAATATTTAAAATTTAAATAAGTAAATATAAGTAAAAATAT
6967388 AATAATAGTAATACTTTGAAGGTATAAAAAGACATAAATAAATAGTAAG
65 AATAATAGTAATACTTTGAAGGTATAAAAAGACATAAATAAATAGTAAG
6967437 TAATAAAATATATAATAAGACAAAAATATTTAAAATTTAAATAAGTAAATATAAGTAAAAATATA
1 TAATAAAATATATAATAAGACAAAAATATTTAAAATTTAAATAAGTAAATATAAGTAAAAATATA
6967502 ATAATAGTAATACTTTGAAGGTATAAAAAGACATAAATAAATAGTAAG
66 ATAATAGTAATACTTTGAAGGTATAAAAAGACATAAATAAATAGTAAG
6967550 TAATAAAATATATAATAAGACAA
1 TAATAAAATATATAATAAGACAA
6967573 TTATGTACGC
Statistics
Matches: 136, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
113 130 0.96
114 6 0.04
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.29
Consensus pattern (113 bp):
TAATAAAATATATAATAAGACAAAAATATTTAAAATTTAAATAAGTAAATATAAGTAAAAATATA
ATAATAGTAATACTTTGAAGGTATAAAAAGACATAAATAAATAGTAAG
Found at i:6970132 original size:12 final size:13
Alignment explanation
Indices: 6970115--6970158 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
6970105 AATCAAAACC
6970115 AAAACCG-AAAAG
1 AAAACCGAAAAAG
6970127 AAAACCGAAAAAG
1 AAAACCGAAAAAG
**
6970140 AAAAAAGGAAAAAG
1 -AAAACCGAAAAAG
6970154 AAAAC
1 AAAAC
6970159 GGAAGAAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 7 0.26
13 9 0.33
14 11 0.41
ACGTcount: A:0.73, C:0.11, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAACCGAAAAAG
Found at i:6970162 original size:13 final size:13
Alignment explanation
Indices: 6970122--6970162 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
6970112 ACCAAAACCG
*
6970122 AAAAGAAAACCGA
1 AAAAGAAAACGGA
*
6970135 AAAAGAAAAAAGGA
1 AAAAG-AAAACGGA
6970149 AAAAGAAAACGGA
1 AAAAGAAAACGGA
6970162 A
1 A
6970163 GAAGCAAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.73, C:0.07, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAGAAAACGGA
Found at i:6975244 original size:22 final size:22
Alignment explanation
Indices: 6975205--6975246 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
6975195 TTTGAATTTA
* *
6975205 AATAGGTTATATTGTTTTTACT
1 AATAGGTAACATTGTTTTTACT
*
6975227 AATAGGTAACATTTTTTTTA
1 AATAGGTAACATTGTTTTTA
6975247 ANNNNNNNNN
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (22 bp):
AATAGGTAACATTGTTTTTACT
Found at i:6979371 original size:16 final size:16
Alignment explanation
Indices: 6979350--6979403 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
6979340 TTGATTTGCT
6979350 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
* *
6979366 ATTACACCTCTATTTC
1 ATTACACCTCTAATCC
*
6979382 ATTACGCCTCTAATCC
1 ATTACACCTCTAATCC
*
6979398 AATACA
1 ATTACA
6979404 GCGAACCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.31, C:0.33, G:0.02, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:6985860 original size:2 final size:2
Alignment explanation
Indices: 6985853--6985885 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
6985843 GATTATGACG
6985853 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6985886 CAGTTACAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:6997615 original size:31 final size:30
Alignment explanation
Indices: 6997565--6997623 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
6997555 AAAATATTTA
6997565 AATTTTATGATTTTGAAATTCATTGTTTGGGT
1 AATTTTATGATTTTGAAATTC-TT-TTTGGGT
* *
6997597 AATTTT-TTATTTTTAAATTCTTTTTGG
1 AATTTTATGATTTTGAAATTCTTTTTGG
6997624 AAATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 2 0.08
31 12 0.48
32 6 0.24
ACGTcount: A:0.24, C:0.03, G:0.14, T:0.59
Consensus pattern (30 bp):
AATTTTATGATTTTGAAATTCTTTTTGGGT
Found at i:7004421 original size:22 final size:21
Alignment explanation
Indices: 7004386--7004428 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7004376 ATTGGTTGGG
* *
7004386 TTTTTTATTTTTATTTTTATT
1 TTTTTTAATTTTATTTATATT
7004407 TTTTCTTAATTTTATTTATATT
1 TTTT-TTAATTTTATTTATATT
7004429 AAAATCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTTAATTTTATTTATATT
Found at i:7008242 original size:44 final size:43
Alignment explanation
Indices: 7008185--7008777 Score: 338
Period size: 44 Copynumber: 13.7 Consensus size: 43
7008175 CTAGTGCTTC
* * *
7008185 AATCTACTTCACTGCAACTTCAGGGAGATAAGATTTGCTTCCTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAT-CTT
* * * *
7008229 AGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAG-ATAC--
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAT-CTT
* * * * * * *
7008270 GATCTGCT-CTCTGTAACTTCAGAGAGATAAGATCTGAGATTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CATCTT
* * * *
7008313 AATCCGCTCCACTGCAACTTTAGGGAGATAGGA-TTGTCAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CATC-TT
* * *
7008357 AATCTGTTCCACTACAACTTCAAGGAGATAAGATTTGCCATCTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CATCTT
* * * * *
7008401 CAGTCTGC-CTCACTGCCACTTTA-GGAGGATAAGACTTGCTTACTT
1 -AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTTGCAT-CTT
* * * * *
7008446 AGTCTGCTTCACTGCAACTTCAGGAAGATAAGACTAG-ATGC--
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAT-CTT
* * ** * * *
7008487 GATCTGCT-CTCTGCAACTTCAGAAAGATAAGATCTGAGATTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CATCTT
** * * * *
7008530 AATCCACTCCACTGCCACTACAGGGAGATAAGACTAG-ATAC--
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAT-CTT
* * * * *
7008571 AATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGAGATTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CATCTT
* * * * **
7008614 AATCCGCTACACTGCAACTTCAGGGAGATAGGATTTTCGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCATC-TT
*
7008658 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAATTTCCATCTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATTTGCATCTT
* * * *
7008702 CAGTCTGC-CTCATTGCAACTTC-GGGAGGATAAGACTTGCTTACTT
1 -AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTTGCAT-CTT
*
7008747 AGTCTGCTCCACTGCAACTTCAGGGAGATAA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA
7008778 AACTAGATGC
Statistics
Matches: 413, Mismatches: 104, Indels: 64
0.71 0.18 0.11
Matches are distributed among these distances:
40 65 0.16
41 18 0.04
42 8 0.02
43 25 0.06
44 224 0.54
45 73 0.18
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCATCTT
Found at i:7008505 original size:40 final size:40
Alignment explanation
Indices: 7008231--7008860 Score: 186
Period size: 44 Copynumber: 14.7 Consensus size: 40
7008221 GCTTCCTTAG
*
7008231 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATACGA
1 TCTGCT-CACTGCAACTTCAGGAAGATAAGACTAGATACAA
* * **
7008272 TCTGCTCTCTGTAACTTCA-GAGAGATAAGATCTGAGATTTTAA
1 TCTGCTCACTGCAACTTCAGGA-AGATAAGA-CT-AGA-TACAA
* * * * * * **
7008315 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGTCAGCTTTAA
1 TCTGCT-CACTGCAACTTCAGGAAGATAAGA--CT-AGATACAA
* * * * * *
7008359 TCTGTTCCACTACAACTTCAAGG-AGATAAGATTTGCCATCTTCAG
1 TCTGCT-CACTGCAACTTC-AGGAAGATAAGACTAG--A--TACAA
* * * * * *
7008404 TCTGCCTCACTGCCACTTTAGGAGGATAAGACTTGCTTACTTAG
1 TCTG-CTCACTGCAACTTCAGGAAGATAAGACTAG-ATAC--AA
* *
7008448 TCTGCTTCACTGCAACTTCAGGAAGATAAGACTAGATGCGA
1 TCTGC-TCACTGCAACTTCAGGAAGATAAGACTAGATACAA
* * **
7008489 TCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAA
1 TCTGCTCACTGCAACTTCAGGAAGATAAGA-CT-AGA-TACAA
** * * *
7008532 TCCACTCCACTGCCACTACAGGGAGATAAGACTAGATACAA
1 TCTGCT-CACTGCAACTTCAGGAAGATAAGACTAGATACAA
* **
7008573 TCTGCTCTCTGCAACTTCA-GAGAGATAAGATCTGAGATTTTAA
1 TCTGCTCACTGCAACTTCAGGA-AGATAAGA-CT-AGA-TACAA
* * * * * * **
7008616 TCCGCTACACTGCAACTTCAGGGAGATAGGATTTTCGGCTTTAA
1 TCTGCT-CACTGCAACTTCAGGAAGATAAGA--CT-AGATACAA
* * ** * *
7008660 TCTGCTCCACTGCAACTTCAGGGAGATAAGAATTTCCATCTTCAG
1 TCTGCT-CACTGCAACTTCAGGAAGATAAG-A---CTAGATACAA
* * * * * *
7008705 TCTGCCTCATTGCAACTTCGGGAGGATAAGACTTGCTTACTTAG
1 TCTG-CTCACTGCAACTTCAGGAAGATAAGACTAG-ATAC--AA
* * * *
7008749 TCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGA
1 TCTGCT-CACTGCAACTTCAGGAAGATAAGACTAGATACAA
* * * **
7008790 TCTGCTCTCTGCTACTTCAGAAAGATAAGATCTGAGATTTTAA
1 TCTGCTCACTGCAACTTCAGGAAGATAAGA-CT-AGA-TACAA
* * *
7008833 TCTGCTCTACCGCAACTTTAGGGAGATA
1 TCTGCTC-ACTGCAACTTCAGGAAGATA
7008861 GGATTGTCGG
Statistics
Matches: 438, Mismatches: 112, Indels: 75
0.70 0.18 0.12
Matches are distributed among these distances:
39 3 0.01
40 79 0.18
41 34 0.08
42 20 0.05
43 39 0.09
44 192 0.44
45 66 0.15
46 5 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (40 bp):
TCTGCTCACTGCAACTTCAGGAAGATAAGACTAGATACAA
Found at i:7008543 original size:84 final size:84
Alignment explanation
Indices: 7008455--7008643 Score: 306
Period size: 84 Copynumber: 2.2 Consensus size: 84
7008445 TAGTCTGCTT
* * *
7008455 CACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAAAGATAAGAT
1 CACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAAGAT
*
7008520 CTGAGATTTTAATCCACTC
66 CTGAGATTTTAATCCACTA
* * *
7008539 CACTGCCACTACAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
1 CACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAAGAT
*
7008604 CTGAGATTTTAATCCGCTA
66 CTGAGATTTTAATCCACTA
7008623 CACTGCAACTTCAGGGAGATA
1 CACTGCAACTTCAGGGAGATA
7008644 GGATTTTCGG
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 95 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (84 bp):
CACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAAGAT
CTGAGATTTTAATCCACTA
Found at i:7008721 original size:217 final size:216
Alignment explanation
Indices: 7008498--7008891 Score: 549
Period size: 217 Copynumber: 1.8 Consensus size: 216
7008488 ATCTGCTCTC
* *
7008498 TGCAACTTCAGAAAGATAAGATCTGAGATT-TTAATCCACTCCACTGCCACTACAGGGAGATAAG
1 TGCAACTTCAGAAAGATAAGA-CT-AGATTATTAATCCACTCCACTGCAACTACAGGGAGATAAA
*
7008562 ACTAGATACAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTAC-AC
64 ACTAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAATCCGCT-CTAC
* *
7008626 TGCAACTTCAGGGAGATAGGATTTTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
128 CGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
7008691 ATTTCCATCTTCAGTCTGCCTCAT
193 ATTTCCATCTTCAGTCTGCCTCAT
* * * * * * ** *
7008715 TGCAACTTCGGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAA
1 TGCAACTTCAGAAAGATAAGACTAGATTA-TTAATCCACTCCACTGCAACTACAGGGAGATAAAA
* * * *
7008780 CTAGATGCGATCTGCTCTCTGCTACTTCAGAAAGATAAGATCTGAGATTTTAATCTGCTCTACCG
65 CTAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAATCCGCTCTACCG
* * *
7008845 CAACTTTAGGGAGATAGGATTGTCGGTTTTAATCTGCTCCATTGCAA
130 CAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAA
7008892 TTAGTCTGCT
Statistics
Matches: 153, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
215 3 0.02
216 3 0.02
217 147 0.96
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (216 bp):
TGCAACTTCAGAAAGATAAGACTAGATTATTAATCCACTCCACTGCAACTACAGGGAGATAAAAC
TAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAATCCGCTCTACCGC
AACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAATT
TCCATCTTCAGTCTGCCTCAT
Found at i:7008858 original size:301 final size:301
Alignment explanation
Indices: 7008231--7008860 Score: 1019
Period size: 301 Copynumber: 2.1 Consensus size: 301
7008221 GCTTCCTTAG
* * *
7008231 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATACGATCTGCTCTCTGTAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAG
* *
7008296 ATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGTCAGCTTTAATC
66 ATAAGATCTGAGATTTTAATCCGCTACACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATC
* * *
7008361 TGTTCCACTACAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCCACTTTAGG
131 TGCTCCACTACAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGG
* *
7008426 AGGATAAGACTTGCTTACTTAGTCTGCTTCACTGCAACTTCAGGAAGATAAGACTAGATGCGATC
196 AGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAAACTAGATGCGATC
7008491 TGCTCTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAA
261 TGCTCTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAA
** * *
7008532 TCCACTCCACTGCCACTACAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAG
* *
7008597 ATAAGATCTGAGATTTTAATCCGCTACACTGCAACTTCAGGGAGATAGGATTTTCGGCTTTAATC
66 ATAAGATCTGAGATTTTAATCCGCTACACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATC
* * * *
7008662 TGCTCCACTGCAACTTCAGGGAGATAAGAATTT-CCATCTTCAGTCTGCCTCATTGCAACTTCGG
131 TGCTCCACTACAACTTCAAGGAGATAAG-ATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAG
*
7008726 GAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGAT
195 GAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAAACTAGATGCGAT
*
7008791 CTGCTCTCTGCTACTTCAGAAAGATAAGATCTGAGATTTTAA
260 CTGCTCTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAA
* * *
7008833 TCTGCTCTACCGCAACTTTAGGGAGATA
1 TCTGCTCCACTGCAACTTCAGGGAGATA
7008861 GGATTGTCGG
Statistics
Matches: 299, Mismatches: 29, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
301 295 0.99
302 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (301 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAG
ATAAGATCTGAGATTTTAATCCGCTACACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATC
TGCTCCACTACAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGG
AGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAAACTAGATGCGATC
TGCTCTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAA
Found at i:7009025 original size:147 final size:147
Alignment explanation
Indices: 7008745--7009027 Score: 406
Period size: 147 Copynumber: 1.9 Consensus size: 147
7008735 ACTTGCTTAC
*
7008745 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGCTACTTCAG
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGCAACTTCAG
* * * ** ***
7008810 AAAGATAAGATCTGAGATTTTAATCTGCTCTACCGCAACTTTAGGGAGATAGGATTGTCGGTTTT
66 AAAGATAAGATCTGAGATTTTAATCCGCTCCACCGCAACTTCAGGGAGATAGGATTCCCGGCACT
7008875 AATCTGCTCCATTGCAA
131 AATCTGCTCCATTGCAA
* * * * *
7008892 TTAGTCTGCTCCATTGTAACTTCAGGGAGATAAGACTAGATGCGATTTGCTCTCTGCAACTTTAG
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGCAACTTCAG
* *
7008957 AGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TCCCGGCCAC
66 AAAGATAAGATCTGAGATTTTAATCCGCTCCACCGCAACTTCAGGGAGATAGGATTCCCGG-CAC
7009021 TAATCTG
130 TAATCTG
7009028 TTTTTATGAC
Statistics
Matches: 119, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
146 4 0.03
147 115 0.97
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (147 bp):
TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGCAACTTCAG
AAAGATAAGATCTGAGATTTTAATCCGCTCCACCGCAACTTCAGGGAGATAGGATTCCCGGCACT
AATCTGCTCCATTGCAA
Found at i:7023750 original size:51 final size:51
Alignment explanation
Indices: 7023695--7023798 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
7023685 GGTATTGCTA
7023695 TTTTTGATTGCGGAATATGGCTCTTTATTGATTGTGAATTCGGGATCCTTT
1 TTTTTGATTGCGGAATATGGCTCTTTATTGATTGTGAATTCGGGATCCTTT
**
7023746 TTTTTTTTTGCGGAATATGGCTCTTTATTGATTGTGAATTCGGGATCCTTT
1 TTTTTGATTGCGGAATATGGCTCTTTATTGATTGTGAATTCGGGATCCTTT
7023797 TT
1 TT
7023799 ACAATGTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.16, C:0.12, G:0.22, T:0.50
Consensus pattern (51 bp):
TTTTTGATTGCGGAATATGGCTCTTTATTGATTGTGAATTCGGGATCCTTT
Found at i:7023796 original size:25 final size:25
Alignment explanation
Indices: 7023717--7023796 Score: 58
Period size: 24 Copynumber: 3.2 Consensus size: 25
7023707 GAATATGGCT
7023717 CTTTATTGATTGTGAATTCGGGATC
1 CTTTATTGATTGTGAATTCGGGATC
* ** * *
7023742 CTTTTTTTTTTTTGCGGAATAT--GGCT-
1 C--TTTATTGATTG-TGAAT-TCGGGATC
7023768 CTTTATTGATTGTGAATTCGGGATC
1 CTTTATTGATTGTGAATTCGGGATC
7023793 CTTT
1 CTTT
7023797 TTACAATGTA
Statistics
Matches: 38, Mismatches: 10, Indels: 14
0.61 0.16 0.23
Matches are distributed among these distances:
22 1 0.03
23 4 0.11
24 11 0.29
25 5 0.13
26 1 0.03
27 11 0.29
28 4 0.11
29 1 0.03
ACGTcount: A:0.16, C:0.12, G:0.21, T:0.50
Consensus pattern (25 bp):
CTTTATTGATTGTGAATTCGGGATC
Found at i:7024979 original size:43 final size:43
Alignment explanation
Indices: 7024901--7024988 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 43
7024891 ACACCGTTAT
* *
7024901 AGAACATGACCTTTAACGGCGATTTCCCCACAAACGCCGCTAA
1 AGAACATGACCTTTAACGACGATTTCCCCAAAAACGCCGCTAA
* *
7024944 AGAACATGACCTTTAGCGAC-ACTTTTCCCAAAAACGCCGCTAA
1 AGAACATGACCTTTAACGACGA-TTTCCCCAAAAACGCCGCTAA
7024987 AG
1 AG
7024989 GTCATGTTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.03
43 39 0.98
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.19
Consensus pattern (43 bp):
AGAACATGACCTTTAACGACGATTTCCCCAAAAACGCCGCTAA
Found at i:7031128 original size:36 final size:36
Alignment explanation
Indices: 7031087--7031393 Score: 564
Period size: 36 Copynumber: 8.6 Consensus size: 36
7031077 ATCCAAAGTT
7031087 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
7031123 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
7031159 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
7031195 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
7031231 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
7031267 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
7031303 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
* *
7031339 TTATGTAATTTATGGTATGATATATATTTATGT-A-
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
* *
7031373 TTATGTAAGTTAAGTTATGAT
1 TTATGTAAGTTATGATATGAT
7031394 CCAATTTTTT
Statistics
Matches: 266, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
34 18 0.07
35 1 0.00
36 247 0.93
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (36 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAAG
Found at i:7031459 original size:13 final size:13
Alignment explanation
Indices: 7031441--7031467 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7031431 TGATTATCAT
7031441 CTTTAAATTTTAA
1 CTTTAAATTTTAA
7031454 CTTTAAATTTTAA
1 CTTTAAATTTTAA
7031467 C
1 C
7031468 CCTTAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:7032325 original size:19 final size:17
Alignment explanation
Indices: 7032297--7032336 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
7032287 AGATTTGTTA
7032297 TTTC-TTTTGTTTACTTCT
1 TTTCATTTTGTTTA-TT-T
7032315 TTTCATTTTGTTTATTT
1 TTTCATTTTGTTTATTT
7032332 TTTCA
1 TTTCA
7032337 ATACTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 6 0.29
19 9 0.43
ACGTcount: A:0.10, C:0.12, G:0.05, T:0.72
Consensus pattern (17 bp):
TTTCATTTTGTTTATTT
Found at i:7032461 original size:28 final size:28
Alignment explanation
Indices: 7032430--7032484 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
7032420 TTAAATAAAT
*
7032430 AAAAACGCATAATTGAACAAGCGGTTTA
1 AAAAACGCATAAATGAACAAGCGGTTTA
*
7032458 AAAAAGGCATAAATGAACAAGCGGTTT
1 AAAAACGCATAAATGAACAAGCGGTTT
7032485 TACTTTGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (28 bp):
AAAAACGCATAAATGAACAAGCGGTTTA
Found at i:7032675 original size:71 final size:72
Alignment explanation
Indices: 7032490--7032697 Score: 224
Period size: 71 Copynumber: 2.9 Consensus size: 72
7032480 GGTTTTACTT
* * * *
7032490 TGTATAAC-AGAATAAATGGTTCCACTTAATATCAAAACTCAATAAGTTGAACTAAATTAACCTT
1 TGTATAACTA-AATAAACGGTTTCACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTT
*
7032554 TTTAAAAA
65 TCTAAAAA
* * * * * ** ** *
7032562 T-TCATAATTGAACAAACGTTTTTACTTAATATCAAATTTTAATAAATCAAACTAAATTAAGC-T
1 TGT-ATAACTAAATAAACGGTTTCACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTT
*
7032625 TCTGAAAA
65 TCTAAAAA
*
7032633 TGTATAACTAAATAAACGGTTTCGCTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTT
1 TGTATAACTAAATAAACGGTTTCACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTT
7032698 TTTAAAAACA
Statistics
Matches: 105, Mismatches: 27, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
71 57 0.54
72 48 0.46
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (72 bp):
TGTATAACTAAATAAACGGTTTCACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTT
CTAAAAA
Found at i:7033507 original size:117 final size:117
Alignment explanation
Indices: 7033301--7033533 Score: 423
Period size: 117 Copynumber: 2.0 Consensus size: 117
7033291 AATACCAAGC
* *
7033301 GAAGAGAAAGCCACAGTTTTAAATATAATGGTGAAATTCACTGCTATTACCTTTACAAACTTTGG
1 GAAGAGAAAGCAACAGTTTTAAATATAAGGGTGAAATTCACTGCTATTACCTTTACAAACTTTGG
7033366 CCTGCTTAATACGATCTGACCAAAAAAGAGAAAGAAATAGATAATTTGGAGT
66 CCTGCTTAATACGATCTGACCAAAAAAGAGAAAGAAATAGATAATTTGGAGT
*
7033418 GAAGAGTAAGCAACAGTTTTAAATATAAGGGTGAAATTCACTGCTATTACCTTTACAAACTTTGG
1 GAAGAGAAAGCAACAGTTTTAAATATAAGGGTGAAATTCACTGCTATTACCTTTACAAACTTTGG
7033483 CCTGCTTAATACTG-TCTGACCAAAAAAGAGAAAGAAATAGATAATTTGGAG
66 CCTGCTTAATAC-GATCTGACCAAAAAAGAGAAAGAAATAGATAATTTGGAG
7033534 CTCAGTAACT
Statistics
Matches: 112, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
117 111 0.99
118 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Consensus pattern (117 bp):
GAAGAGAAAGCAACAGTTTTAAATATAAGGGTGAAATTCACTGCTATTACCTTTACAAACTTTGG
CCTGCTTAATACGATCTGACCAAAAAAGAGAAAGAAATAGATAATTTGGAGT
Found at i:7034873 original size:21 final size:23
Alignment explanation
Indices: 7034844--7034887 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
7034834 AACATATAAT
*
7034844 TAAACTAAT-CAAAATTTACAAA
1 TAAACTAATCCAAAAATTACAAA
7034866 TAAA-TAATCCAAAAATTACAAA
1 TAAACTAATCCAAAAATTACAAA
7034888 CAGCAGCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (23 bp):
TAAACTAATCCAAAAATTACAAA
Found at i:7035906 original size:27 final size:27
Alignment explanation
Indices: 7035864--7035935 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
7035854 GCAGAGAAAT
*
7035864 GTCAACGGCTATGCAGCAAAAGGGACA
1 GTCAACGGCGATGCAGCAAAAGGGACA
* * * *
7035891 GTCGACGGCGATGCAGTAGAGGGGACA
1 GTCAACGGCGATGCAGCAAAAGGGACA
7035918 GTCAACGGCGATGCAGCA
1 GTCAACGGCGATGCAGCA
7035936 GATGATCAGG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.22, G:0.36, T:0.11
Consensus pattern (27 bp):
GTCAACGGCGATGCAGCAAAAGGGACA
Found at i:7041206 original size:32 final size:32
Alignment explanation
Indices: 7041160--7041222 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
7041150 ATAAAGAGAT
* * *
7041160 AAAAATATTTTCATAATAATATAACTTATTCA
1 AAAAATACTCTCATAATAATACAACTTATTCA
7041192 AAAAATACTCTCATAATAATACAACTTATTC
1 AAAAATACTCTCATAATAATACAACTTATTC
7041223 TCTAGTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (32 bp):
AAAAATACTCTCATAATAATACAACTTATTCA
Found at i:7048081 original size:37 final size:37
Alignment explanation
Indices: 7048025--7048098 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
7048015 AGGAGAGCTT
*
7048025 GATGGTAGCCAACCAAATAGGTTGGGGTGATTGAGCA
1 GATGGTAGCCAAACAAATAGGTTGGGGTGATTGAGCA
*
7048062 GATGGTAGCCAAACGAATAGGTTGGGGTGATTGAGCA
1 GATGGTAGCCAAACAAATAGGTTGGGGTGATTGAGCA
7048099 AATCGGAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.30, C:0.12, G:0.36, T:0.22
Consensus pattern (37 bp):
GATGGTAGCCAAACAAATAGGTTGGGGTGATTGAGCA
Found at i:7057681 original size:16 final size:16
Alignment explanation
Indices: 7057662--7057710 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
7057652 TATTGCATAG
7057662 TTTTTATATTATTTA-
1 TTTTTATATTATTTAT
7057677 TTTTTA-A-TA-TTAT
1 TTTTTATATTATTTAT
7057690 TTTTTATAATT-TTTAT
1 TTTTTAT-ATTATTTAT
7057706 TTTTT
1 TTTTT
7057711 TTAAAAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
12 3 0.10
13 8 0.28
14 1 0.03
15 7 0.24
16 10 0.34
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTATATTATTTAT
Found at i:7057682 original size:15 final size:15
Alignment explanation
Indices: 7057662--7057709 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
7057652 TATTGCATAG
7057662 TTTTTATATTATTTA
1 TTTTTATATTATTTA
7057677 TTTTTAATATTATTT-
1 TTTTT-ATATTATTTA
*
7057692 TTTATA-ATT-TTTA
1 TTTTTATATTATTTA
7057705 TTTTT
1 TTTTT
7057710 TTTAAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 3 0.10
13 7 0.24
14 1 0.03
15 9 0.31
16 9 0.31
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTATATTATTTA
Found at i:7065182 original size:22 final size:22
Alignment explanation
Indices: 7065156--7065197 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7065146 GGATGAACTA
*
7065156 TTTATTGTTAAAATATTTATAT
1 TTTATTGATAAAATATTTATAT
7065178 TTTATTGATAAAATATTTAT
1 TTTATTGATAAAATATTTAT
7065198 TACTAGATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
TTTATTGATAAAATATTTATAT
Found at i:7065876 original size:5 final size:5
Alignment explanation
Indices: 7065866--7065892 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7065856 ATTTGCCTCA
7065866 CCATC CCATC CCATC CCATC CCATC CC
1 CCATC CCATC CCATC CCATC CCATC CC
7065893 TTATATCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.63, G:0.00, T:0.19
Consensus pattern (5 bp):
CCATC
Found at i:7068543 original size:1 final size:1
Alignment explanation
Indices: 7068537--7068574 Score: 76
Period size: 1 Copynumber: 38.0 Consensus size: 1
7068527 CCATGGAAGC
7068537 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7068575 GCAGAGAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7069634 original size:7 final size:7
Alignment explanation
Indices: 7069622--7069646 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7069612 TATGGTTTGC
7069622 TTTTTCT
1 TTTTTCT
7069629 TTTTTCT
1 TTTTTCT
7069636 TTTTTCT
1 TTTTTCT
7069643 TTTT
1 TTTT
7069647 ACAGTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Done.