Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 25 of 75
Found at i:7461522 original size:16 final size:17
Alignment explanation
Indices: 7461501--7461532 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7461491 ATTGGGTTGA
7461501 GAAAATT-ATTTAATTG
1 GAAAATTAATTTAATTG
7461517 GAAAATTAATTTAATT
1 GAAAATTAATTTAATT
7461533 AAATAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (17 bp):
GAAAATTAATTTAATTG
Found at i:7470103 original size:14 final size:14
Alignment explanation
Indices: 7470086--7470123 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
7470076 TTTTGAATAC
7470086 TTAATTTTTATCAT
1 TTAATTTTTATCAT
*
7470100 TTAATTTCTCATCAT
1 TTAATTT-TTATCAT
7470115 TTAATTTTT
1 TTAATTTTT
7470124 TTAATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (14 bp):
TTAATTTTTATCAT
Found at i:7474646 original size:31 final size:33
Alignment explanation
Indices: 7474609--7474707 Score: 130
Period size: 33 Copynumber: 3.1 Consensus size: 33
7474599 AATGAACTAA
* **
7474609 ATTTAAATGATTTAATATAATGATA-A-ATTAT
1 ATTTAAATAATTTAATATAATGATACATAAAAT
7474640 ATTTAAATAATTTAATATAATGATACATAAAAT
1 ATTTAAATAATTTAATATAATGATACATAAAAT
* * *
7474673 ATTTGATTAATTTAATATAATGATATATAAAAT
1 ATTTAAATAATTTAATATAATGATACATAAAAT
7474706 AT
1 AT
7474708 AAATTAATCT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
31 24 0.40
32 1 0.02
33 35 0.58
ACGTcount: A:0.51, C:0.01, G:0.05, T:0.43
Consensus pattern (33 bp):
ATTTAAATAATTTAATATAATGATACATAAAAT
Found at i:7474706 original size:17 final size:17
Alignment explanation
Indices: 7474653--7474709 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
7474643 TAAATAATTT
*
7474653 AATATAATGATACATAA
1 AATATAATGATATATAA
* **
7474670 AATAT-TTGAT-TAATTT
1 AATATAATGATAT-ATAA
7474686 AATATAATGATATATAA
1 AATATAATGATATATAA
7474703 AATATAA
1 AATATAA
7474710 ATTAATCTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
16 11 0.37
17 18 0.60
18 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (17 bp):
AATATAATGATATATAA
Found at i:7476059 original size:32 final size:32
Alignment explanation
Indices: 7476023--7476084 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
7476013 ATCTAGAATG
*
7476023 AATCTGGACAA-CAGTTTGTCTAGATTCATTTA
1 AATCTCGACAACCA-TTTGTCTAGATTCATTTA
7476055 AATCTCGACAACCATTTGTCTAGATTCATT
1 AATCTCGACAACCATTTGTCTAGATTCATT
7476085 CAAGGAGAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 26 0.93
33 2 0.07
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (32 bp):
AATCTCGACAACCATTTGTCTAGATTCATTTA
Found at i:7478207 original size:42 final size:42
Alignment explanation
Indices: 7478161--7478240 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
7478151 GTCCTCACTC
*
7478161 GTGTAACT-TACTGAGATGCCTCACACGCCC-GTGTGCCAGGCT
1 GTGTAACTCT-CTGAGATGCCACACAC-CCCTGTGTGCCAGGCT
* *
7478203 GTGTAGCTCTCTGAGTTGCCACACACCCCTGTGTGCCA
1 GTGTAACTCTCTGAGATGCCACACACCCCTGTGTGCCA
7478241 AGCAGTGTGC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 3 0.09
42 29 0.88
43 1 0.03
ACGTcount: A:0.17, C:0.33, G:0.25, T:0.25
Consensus pattern (42 bp):
GTGTAACTCTCTGAGATGCCACACACCCCTGTGTGCCAGGCT
Found at i:7483223 original size:167 final size:167
Alignment explanation
Indices: 7482947--7483281 Score: 670
Period size: 167 Copynumber: 2.0 Consensus size: 167
7482937 TGTTACATGC
7482947 TTGAACCGATTTTTATAGCAAGAAACACCATTGGAAAAGTTTGAAAATTTTGCAAAGAAAGTCCC
1 TTGAACCGATTTTTATAGCAAGAAACACCATTGGAAAAGTTTGAAAATTTTGCAAAGAAAGTCCC
7483012 TTGCATGTAAGTGTCATCTTGTCTCGTTTTTGTTAATTTTTATGTTTTCAGTATCGTTGTAGCTT
66 TTGCATGTAAGTGTCATCTTGTCTCGTTTTTGTTAATTTTTATGTTTTCAGTATCGTTGTAGCTT
7483077 AATCTAGCTAAATAGAGGACTAATTTGCAATATGGTA
131 AATCTAGCTAAATAGAGGACTAATTTGCAATATGGTA
7483114 TTGAACCGATTTTTATAGCAAGAAACACCATTGGAAAAGTTTGAAAATTTTGCAAAGAAAGTCCC
1 TTGAACCGATTTTTATAGCAAGAAACACCATTGGAAAAGTTTGAAAATTTTGCAAAGAAAGTCCC
7483179 TTGCATGTAAGTGTCATCTTGTCTCGTTTTTGTTAATTTTTATGTTTTCAGTATCGTTGTAGCTT
66 TTGCATGTAAGTGTCATCTTGTCTCGTTTTTGTTAATTTTTATGTTTTCAGTATCGTTGTAGCTT
7483244 AATCTAGCTAAATAGAGGACTAATTTGCAATATGGTA
131 AATCTAGCTAAATAGAGGACTAATTTGCAATATGGTA
7483281 T
1 T
7483282 GTAACACCCC
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
167 168 1.00
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (167 bp):
TTGAACCGATTTTTATAGCAAGAAACACCATTGGAAAAGTTTGAAAATTTTGCAAAGAAAGTCCC
TTGCATGTAAGTGTCATCTTGTCTCGTTTTTGTTAATTTTTATGTTTTCAGTATCGTTGTAGCTT
AATCTAGCTAAATAGAGGACTAATTTGCAATATGGTA
Found at i:7486031 original size:13 final size:13
Alignment explanation
Indices: 7486013--7486037 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7486003 TCAAACTATC
7486013 AAATTTTCACATG
1 AAATTTTCACATG
7486026 AAATTTTCACAT
1 AAATTTTCACAT
7486038 ATATAACTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATTTTCACATG
Found at i:7486870 original size:25 final size:25
Alignment explanation
Indices: 7486805--7486874 Score: 83
Period size: 24 Copynumber: 2.8 Consensus size: 25
7486795 TCGGGCACAC
*
7486805 CACAGCTCGTATGAGCTTACCAATT
1 CACAGCTCGTATAAGCTTACCAATT
*
7486830 -TCAGCTC--ATGAGAGCTTACCAATT
1 CACAGCTCGTAT-A-AGCTTACCAATT
7486854 CACAGCTCGTATAAGCTTACC
1 CACAGCTCGTATAAGCTTACC
7486875 GTTATTCAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
22 2 0.05
24 18 0.49
25 14 0.38
26 1 0.03
27 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (25 bp):
CACAGCTCGTATAAGCTTACCAATT
Found at i:7486914 original size:49 final size:49
Alignment explanation
Indices: 7486805--7486900 Score: 131
Period size: 49 Copynumber: 1.9 Consensus size: 49
7486795 TCGGGCACAC
* *
7486805 CACAGCTCGTATGAGCTTACCAATTTCAGCTCATGAGAGCTTACCAATT
1 CACAGCTCGTATAAGCTTACCAATTTCAGCTCATGAGAACTTACCAATT
**
7486854 CACAGCTCGTATAAGCTTACCGTTATTCAGCTCA-GAGGAACTTACCA
1 CACAGCTCGTATAAGCTTACCAAT-TTCAGCTCATGA-GAACTTACCA
7486901 TTTATCGCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
49 23 0.56
50 18 0.44
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (49 bp):
CACAGCTCGTATAAGCTTACCAATTTCAGCTCATGAGAACTTACCAATT
Found at i:7513328 original size:32 final size:32
Alignment explanation
Indices: 7513289--7513370 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 32
7513279 TTGAAATTTT
*
7513289 AGTTTGTTGGATTTTGAAATTATTATGTCTTGA
1 AGTTTGTTGGATATTGAAATTATTATGT-TTGA
* * *
7513322 A-TTTGTTAGATATTGAATTTATTATGTTTTA
1 AGTTTGTTGGATATTGAAATTATTATGTTTGA
*
7513353 AGCTTGTTGGATATTGAA
1 AGTTTGTTGGATATTGAA
7513371 GTGATTGACA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 4 0.10
32 37 0.88
33 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (32 bp):
AGTTTGTTGGATATTGAAATTATTATGTTTGA
Found at i:7514767 original size:19 final size:19
Alignment explanation
Indices: 7514721--7514767 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
7514711 CATCCAAATA
7514721 CTAGAAAAGTAAATCATTT
1 CTAGAAAAGTAAATCATTT
* *
7514740 CCAGAAAAATAAATCATTTT
1 CTAGAAAAGTAAATCA-TTT
7514760 CTAGAAAA
1 CTAGAAAA
7514768 CATTTTACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.28
Consensus pattern (19 bp):
CTAGAAAAGTAAATCATTT
Found at i:7517298 original size:7 final size:7
Alignment explanation
Indices: 7517263--7517294 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
7517253 TTTTTATTTG
7517263 TGTTATT
1 TGTTATT
7517270 TGTTATT
1 TGTTATT
7517277 TGTTATT
1 TGTTATT
*
7517284 TGTTTTT
1 TGTTATT
7517291 TGTT
1 TGTT
7517295 TTTTTTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.09, C:0.00, G:0.16, T:0.75
Consensus pattern (7 bp):
TGTTATT
Found at i:7524120 original size:21 final size:21
Alignment explanation
Indices: 7524094--7524144 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
7524084 CCCGGCTTAA
7524094 TGGATATAGGTATTCATCACT
1 TGGATATAGGTATTCATCACT
7524115 TGGATATAGGTATTCATCACT
1 TGGATATAGGTATTCATCACT
7524136 TGGATATAG
1 TGGATATAG
7524145 TCTGGATTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (21 bp):
TGGATATAGGTATTCATCACT
Found at i:7524680 original size:31 final size:31
Alignment explanation
Indices: 7524642--7524702 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
7524632 TTGGTGTAAT
7524642 TATATACTTGAAACACTAATTGTGATTTAAA
1 TATATACTTGAAACACTAATTGTGATTTAAA
** *
7524673 TATATACTTGAAACTTTAATTTTGATTTAA
1 TATATACTTGAAACACTAATTGTGATTTAA
7524703 TCATACACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (31 bp):
TATATACTTGAAACACTAATTGTGATTTAAA
Found at i:7525523 original size:22 final size:22
Alignment explanation
Indices: 7525498--7525552 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
7525488 GGATATTTGT
*
7525498 TACAGTTACAGAACAG-TGCAGA
1 TACAGATACAGAACAGAT-CAGA
*
7525520 TACAGATGCAGAACAGATCAGA
1 TACAGATACAGAACAGATCAGA
7525542 T-CAGATACAGA
1 TACAGATACAGA
7525553 TGCATTTTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.31
22 19 0.66
23 1 0.03
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (22 bp):
TACAGATACAGAACAGATCAGA
Found at i:7525524 original size:11 final size:11
Alignment explanation
Indices: 7525506--7525552 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
7525496 GTTACAGTTA
7525506 CAGAACAG-TG
1 CAGAACAGATG
7525516 CAGATACAGATG
1 CAGA-ACAGATG
7525528 CAGAACAGAT-
1 CAGAACAGATG
* *
7525538 CAGATCAGATA
1 CAGAACAGATG
7525549 CAGA
1 CAGA
7525553 TGCATTTTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
10 13 0.39
11 14 0.42
12 6 0.18
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.13
Consensus pattern (11 bp):
CAGAACAGATG
Found at i:7525535 original size:27 final size:27
Alignment explanation
Indices: 7525505--7525556 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
7525495 TGTTACAGTT
7525505 ACAGAACAG-TGCAGATACAGATGCAGA
1 ACAGAACAGAT-CAGATACAGATGCAGA
*
7525532 ACAGATCAGATCAGATACAGATGCA
1 ACAGAACAGATCAGATACAGATGCA
7525557 TTTTCCTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.13
Consensus pattern (27 bp):
ACAGAACAGATCAGATACAGATGCAGA
Found at i:7525541 original size:5 final size:6
Alignment explanation
Indices: 7525498--7525553 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 6
7525488 GGATATTTGT
* * *
7525498 TACAGT TACAGA -ACAG- TGCAGA TACAGA TGCAGA -ACAGA T-CAGA
1 TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA
7525542 T-CAGA TACAGA T
1 TACAGA TACAGA T
7525554 GCATTTTCCT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
5 21 0.51
6 20 0.49
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (6 bp):
TACAGA
Found at i:7528428 original size:28 final size:28
Alignment explanation
Indices: 7528396--7528561 Score: 156
Period size: 28 Copynumber: 6.0 Consensus size: 28
7528386 TATTTTCCAT
* * *
7528396 ATTTTATAGTTTGGCCCATGTTTTCTAG
1 ATTTTATAGTTTTGCCCATATTTTTTAG
*
7528424 ATTTTATAGTTTTGCCCATATTTTTTAA
1 ATTTTATAGTTTTGCCCATATTTTTTAG
* *
7528452 ATTTTATAGTTTTACCCCTATTTTTTAG
1 ATTTTATAGTTTTGCCCATATTTTTTAG
* * * *
7528480 ATTTTTACAATTTTGTCCATGTTTTTTAG
1 A-TTTTATAGTTTTGCCCATATTTTTTAG
* * * * *
7528509 ATTTTACAATTTT-CCCCTA-TTTTCAA
1 ATTTTATAGTTTTGCCCATATTTTTTAG
* *
7528535 ATTTTATAGTTTTGCTCTTATTTTTTA
1 ATTTTATAGTTTTGCCCATATTTTTTA
7528562 TATATTACAA
Statistics
Matches: 112, Mismatches: 23, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
26 16 0.14
27 7 0.06
28 67 0.60
29 22 0.20
ACGTcount: A:0.22, C:0.13, G:0.08, T:0.57
Consensus pattern (28 bp):
ATTTTATAGTTTTGCCCATATTTTTTAG
Found at i:7528481 original size:56 final size:55
Alignment explanation
Indices: 7528396--7528561 Score: 165
Period size: 57 Copynumber: 3.0 Consensus size: 55
7528386 TATTTTCCAT
**
7528396 ATTTTATAGTTTGGCCC-ATGTTTTCTAGATTTTATAGTTTTGCCCATATTTTTTAA
1 ATTTTATAGTTTTCCCCTAT-TTTT-TAGATTTTATAGTTTTGCCCATATTTTTTAA
* * * * *
7528452 ATTTTATAGTTTTACCCCTATTTTTTAGATTTTTACAATTTTGTCCATGTTTTTTAG
1 ATTTTATAGTTTT-CCCCTATTTTTTAGA-TTTTATAGTTTTGCCCATATTTTTTAA
* * * * * *
7528509 ATTTTACAATTTTCCCCTA-TTTTCAAATTTTATAGTTTTGCTCTTATTTTTTA
1 ATTTTATAGTTTTCCCCTATTTTTTAGATTTTATAGTTTTGCCCATATTTTTTA
7528562 TATATTACAA
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
54 20 0.22
55 6 0.07
56 22 0.24
57 40 0.44
58 2 0.02
ACGTcount: A:0.22, C:0.13, G:0.08, T:0.57
Consensus pattern (55 bp):
ATTTTATAGTTTTCCCCTATTTTTTAGATTTTATAGTTTTGCCCATATTTTTTAA
Found at i:7528583 original size:27 final size:27
Alignment explanation
Indices: 7528416--7528588 Score: 114
Period size: 28 Copynumber: 6.3 Consensus size: 27
7528406 TTGGCCCATG
* * * *
7528416 TTTTCTAGATTTTATAGTTTTGCCCATA
1 TTTTTTAGATTTTACAATTTTGTCC-TA
* * * **
7528444 TTTTTTAAATTTTATAGTTTTACCCCTA
1 TTTTTTAGATTTTACAATTTT-GTCCTA
*
7528472 TTTTTTAGATTTTTACAATTTTGTCCATG
1 TTTTTTAGA-TTTTACAATTTTGTCC-TA
**
7528501 TTTTTTAGATTTTACAATTTTCCCCTA
1 TTTTTTAGATTTTACAATTTTGTCCTA
* * * * *
7528528 -TTTTCAAATTTTATAGTTTTGCTCTTA
1 TTTTTTAGATTTTACAATTTTG-TCCTA
* *
7528555 TTTTTTATATATTACAATTTTGTCCTA
1 TTTTTTAGATTTTACAATTTTGTCCTA
*
7528582 TTCTTTA
1 TTTTTTA
7528589 CAAATTTTAA
Statistics
Matches: 114, Mismatches: 26, Indels: 11
0.75 0.17 0.07
Matches are distributed among these distances:
26 16 0.14
27 14 0.12
28 61 0.54
29 23 0.20
ACGTcount: A:0.23, C:0.13, G:0.06, T:0.58
Consensus pattern (27 bp):
TTTTTTAGATTTTACAATTTTGTCCTA
Found at i:7528596 original size:83 final size:83
Alignment explanation
Indices: 7528445--7528597 Score: 193
Period size: 83 Copynumber: 1.8 Consensus size: 83
7528435 TTGCCCATAT
* * ** *
7528445 TTTTTAAATTTTATAGTTTTACCCCTATTTTTTAGATTTTTACAATTTTGTCCATGTTTTTTAGA
1 TTTTCAAATTTTATAGTTTTACCCCTATTTTTTAGATTATTACAATTTTGTCCATGTTTTACAAA
7528510 TTTTACAATTTTCCCCTA
66 TTTTACAATTTTCCCCTA
* * * *
7528528 TTTTCAAATTTTATAGTTTTGCTCTTATTTTTTATA-TATTACAATTTTGTCCTAT-TCTTTACA
1 TTTTCAAATTTTATAGTTTTACCCCTATTTTTTAGATTATTACAATTTTGTCC-ATGT-TTTACA
7528591 AATTTTA
64 AATTTTA
7528598 AAAATTTACC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
82 16 0.27
83 43 0.73
ACGTcount: A:0.24, C:0.13, G:0.05, T:0.58
Consensus pattern (83 bp):
TTTTCAAATTTTATAGTTTTACCCCTATTTTTTAGATTATTACAATTTTGTCCATGTTTTACAAA
TTTTACAATTTTCCCCTA
Found at i:7530633 original size:20 final size:19
Alignment explanation
Indices: 7530606--7530778 Score: 109
Period size: 20 Copynumber: 8.7 Consensus size: 19
7530596 TTCTGAGACC
7530606 ATACCAAAAATTATGAGGA
1 ATACCAAAAATTATGAGGA
* *
7530625 AGTATC-AAAATTGTTGAGGA
1 A-TACCAAAAATT-ATGAGGA
* * *
7530645 AGTACCAAAATTTTTAAGGGA
1 A-TACCAAAAATTATGA-GGA
*
7530666 ATACCAGAAAA-CATGAGGGA
1 ATACCA-AAAATTATGA-GGA
* *
7530686 ATACAAAAAATTATAAGTGA
1 ATACCAAAAATTATGAG-GA
*
7530706 ATACCAAAAAATATGAGGA
1 ATACCAAAAATTATGAGGA
**
7530725 AGTGTCAAAAATTATGAGAGA
1 A-TACCAAAAATTATGAG-GA
* *
7530746 ATACCAAATAA-CATGAGGGG
1 ATACCAAA-AATTATGA-GGA
7530766 ATACCAAAAATTA
1 ATACCAAAAATTA
7530779 GGAAGCACTA
Statistics
Matches: 119, Mismatches: 23, Indels: 23
0.72 0.14 0.14
Matches are distributed among these distances:
19 17 0.14
20 84 0.71
21 18 0.15
ACGTcount: A:0.50, C:0.10, G:0.18, T:0.21
Consensus pattern (19 bp):
ATACCAAAAATTATGAGGA
Found at i:7530683 original size:40 final size:39
Alignment explanation
Indices: 7530639--7530778 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 39
7530629 TCAAAATTGT
* * *
7530639 TGAGGAAGTACCAAAATTTTTAAGGGAATACCAGAAAACA
1 TGAGGAAGTACCAAAAATTATAAGAGAATACCA-AAAACA
* * *
7530679 TGAGGGAA-TACAAAAAATTATAAGTGAATACCAAAAAATA
1 TGA-GGAAGTACCAAAAATTATAAGAGAATACC-AAAAACA
** *
7530719 TGAGGAAGTGTCAAAAATTATGAGAGAATACCAAATAACA
1 TGAGGAAGTACCAAAAATTATAAGAGAATACCAAA-AACA
*
7530759 TGAGG-GGATACCAAAAATTA
1 TGAGGAAG-TACCAAAAATTA
7530779 GGAAGCACTA
Statistics
Matches: 81, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
39 8 0.10
40 68 0.84
41 5 0.06
ACGTcount: A:0.51, C:0.10, G:0.19, T:0.20
Consensus pattern (39 bp):
TGAGGAAGTACCAAAAATTATAAGAGAATACCAAAAACA
Found at i:7530714 original size:80 final size:80
Alignment explanation
Indices: 7530606--7530778 Score: 190
Period size: 80 Copynumber: 2.2 Consensus size: 80
7530596 TTCTGAGACC
* * * * * * *
7530606 ATACCAAAAATTATGAGGAAGTATC-AAAATTGTTGAGGAAGTACCAAAATTTTTAAGGGAATAC
1 ATACCAAAAATTATAAGGAAGTACCAAAAAAT-ATGAGGAAGTACCAAAAATTATAAGAGAATAC
7530670 CAGAA-AACATGAGGGA
65 CA-AATAACATGAGGGA
* ** *
7530686 ATACAAAAAATTATAAGTGAA-TACCAAAAAATATGAGGAAGTGTCAAAAATTATGAGAGAATAC
1 ATACCAAAAATTATAAG-GAAGTACCAAAAAATATGAGGAAGTACCAAAAATTATAAGAGAATAC
*
7530750 CAAATAACATGAGGGG
65 CAAATAACATGAGGGA
7530766 ATACCAAAAATTA
1 ATACCAAAAATTA
7530779 GGAAGCACTA
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.03
80 67 0.87
81 8 0.10
ACGTcount: A:0.50, C:0.10, G:0.18, T:0.21
Consensus pattern (80 bp):
ATACCAAAAATTATAAGGAAGTACCAAAAAATATGAGGAAGTACCAAAAATTATAAGAGAATACC
AAATAACATGAGGGA
Found at i:7531650 original size:20 final size:20
Alignment explanation
Indices: 7531626--7531672 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7531616 AAGGGTATAC
*
7531626 CAAAAAATTTCTAA-AAAGTA
1 CAAAAAA-TTATAAGAAAGTA
*
7531646 TAAAAAATTATAAGAAAGTA
1 CAAAAAATTATAAGAAAGTA
7531666 CAAAAAA
1 CAAAAAA
7531673 AAATTACGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.21
Consensus pattern (20 bp):
CAAAAAATTATAAGAAAGTA
Found at i:7537105 original size:26 final size:27
Alignment explanation
Indices: 7537052--7537101 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7537042 TAAATAATTT
* *
7537052 AAAATTTATAAAATATTTAACAAATAA
1 AAAATTCATAAAATATTTAAAAAATAA
7537079 AAAATTCATAAAA-A-TTAAAAAAT
1 AAAATTCATAAAATATTTAAAAAAT
7537102 TAAATACACG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 1 0.05
27 12 0.57
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAATTCATAAAATATTTAAAAAATAA
Found at i:7545323 original size:42 final size:42
Alignment explanation
Indices: 7545276--7545415 Score: 133
Period size: 42 Copynumber: 3.3 Consensus size: 42
7545266 CCCCGAGGGA
* * *
7545276 TTGCTAAGTGTTGATTCCCCGAATTATTGATTCTAAAGGTGG
1 TTGCTAAGTGCTGATTCCCCGTATTATTGATTATAAAGGTGG
* * *
7545318 TTGCTAAGTGCT-ATTCCACCGTA-TATTTCATTGTAAA-ATGGG
1 TTGCTAAGTGCTGATTCC-CCGTATTA-TTGATTATAAAGGT-GG
* * * * *
7545360 TTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGA
1 TTGCTAAGTGCTGATTCCCCGTATTATTGATTATAAAGGTGG
7545402 TTGCTAAGTGCTGA
1 TTGCTAAGTGCTGA
7545416 ATCCACCGAG
Statistics
Matches: 78, Mismatches: 14, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
41 8 0.10
42 63 0.81
43 7 0.09
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.36
Consensus pattern (42 bp):
TTGCTAAGTGCTGATTCCCCGTATTATTGATTATAAAGGTGG
Found at i:7547408 original size:21 final size:22
Alignment explanation
Indices: 7547359--7547415 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
7547349 GAACCAAACT
*
7547359 AAACAATTTATC--TTAATTTA
1 AAACAATATATCAATTAATTTA
*
7547379 GAACAATAT-TCAATTAATTTA
1 AAACAATATATCAATTAATTTA
7547400 TAAAC-ATATATCAATT
1 -AAACAATATATCAATT
7547416 CATAGAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 2 0.07
20 7 0.23
21 12 0.40
22 9 0.30
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (22 bp):
AAACAATATATCAATTAATTTA
Found at i:7548623 original size:40 final size:40
Alignment explanation
Indices: 7548579--7548657 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
7548569 AAGGGCACAA
* *
7548579 AAGTGCAATCAAGAACACGAGTGTGCAATCAGGGGCACCG
1 AAGTGCAATCAAGAACACGAATGTGCAATCAGGGACACCG
* * **
7548619 AAGTGCATTCAGGGGCACGAATGTGCAATCAGGGACACC
1 AAGTGCAATCAAGAACACGAATGTGCAATCAGGGACACC
7548658 AAAATATTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.33, C:0.23, G:0.30, T:0.14
Consensus pattern (40 bp):
AAGTGCAATCAAGAACACGAATGTGCAATCAGGGACACCG
Found at i:7548624 original size:20 final size:21
Alignment explanation
Indices: 7548600--7548657 Score: 84
Period size: 20 Copynumber: 2.9 Consensus size: 21
7548590 AGAACACGAG
7548600 TGTGCAATCAGGGGCACCGAA
1 TGTGCAATCAGGGGCACCGAA
*
7548621 -GTGCATTCAGGGGCA-CGAA
1 TGTGCAATCAGGGGCACCGAA
*
7548640 TGTGCAATCAGGGACACC
1 TGTGCAATCAGGGGCACC
7548658 AAAATATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 4 0.12
20 27 0.84
21 1 0.03
ACGTcount: A:0.28, C:0.24, G:0.33, T:0.16
Consensus pattern (21 bp):
TGTGCAATCAGGGGCACCGAA
Found at i:7548672 original size:40 final size:39
Alignment explanation
Indices: 7548594--7548687 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 39
7548584 CAATCAAGAA
* * * *
7548594 CACGAGTGTGCAATCAGGGGCACCGAAGTGCATTCAGGGG
1 CACGAATGTGCAATCAGGGACACCAAAAT-CATTCAGGGG
7548634 CACGAATGTGCAATCAGGGACACCAAAAT-ATTTACAGGGG
1 CACGAATGTGCAATCAGGGACACCAAAATCA-TT-CAGGGG
* *
7548674 CACCAAGGTGCAAT
1 CACGAATGTGCAAT
7548688 GAAGGTACTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 43 0.93
ACGTcount: A:0.32, C:0.22, G:0.30, T:0.16
Consensus pattern (39 bp):
CACGAATGTGCAATCAGGGACACCAAAATCATTCAGGGG
Found at i:7551986 original size:20 final size:20
Alignment explanation
Indices: 7551957--7551994 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7551947 ATATGATTGA
*
7551957 AAAAAGAATTATGTAAAAAT
1 AAAAAGAATTATATAAAAAT
*
7551977 AAAAATAATTATATAAAA
1 AAAAAGAATTATATAAAA
7551995 TTAACGAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26
Consensus pattern (20 bp):
AAAAAGAATTATATAAAAAT
Found at i:7559201 original size:45 final size:45
Alignment explanation
Indices: 7559150--7559260 Score: 107
Period size: 45 Copynumber: 2.5 Consensus size: 45
7559140 GTTGCCACTA
*
7559150 GGTTGTGAATGCACAGCAAAAATACCGCAGATGGAATCTACCTAT
1 GGTTGTGAATACACAGCAAAAATACCGCAGATGGAATCTACCTAT
** * * * ** *
7559195 GGTTGTGGGTACAGAGCAAGACTGTCGCAGATGGAATCTACTTAT
1 GGTTGTGAATACACAGCAAAAATACCGCAGATGGAATCTACCTAT
* *
7559240 GGTTTTGAGA-ACACAACAAAA
1 GGTTGTGA-ATACACAGCAAAA
7559261 TAATGTAAAT
Statistics
Matches: 50, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (45 bp):
GGTTGTGAATACACAGCAAAAATACCGCAGATGGAATCTACCTAT
Found at i:7579193 original size:24 final size:23
Alignment explanation
Indices: 7579116--7579196 Score: 92
Period size: 23 Copynumber: 3.5 Consensus size: 23
7579106 TAATATCCAC
* *
7579116 GAACATGTTCATTTAAC-TTAATC
1 GAACATGTTCA-TAAACATTAATT
* *
7579139 GAACATGTTCACAAACATTAAAT
1 GAACATGTTCATAAACATTAATT
*
7579162 GAACATGTTCATGAACATATAATT
1 GAACATGTTCATAAACAT-TAATT
7579186 GAACATGTTCA
1 GAACATGTTCA
7579197 CGAAAAATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
22 3 0.06
23 31 0.63
24 15 0.31
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (23 bp):
GAACATGTTCATAAACATTAATT
Found at i:7579883 original size:18 final size:18
Alignment explanation
Indices: 7579860--7579902 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
7579850 ACCTAAAACT
7579860 ACCCATAGCCTC-TCCTCA
1 ACCCATAGCCTCTTCC-CA
7579878 ACCCATAGCCTCTTCCCA
1 ACCCATAGCCTCTTCCCA
7579896 ACCCATA
1 ACCCATA
7579903 AATATAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.26, C:0.49, G:0.05, T:0.21
Consensus pattern (18 bp):
ACCCATAGCCTCTTCCCA
Found at i:7580065 original size:23 final size:23
Alignment explanation
Indices: 7580034--7580089 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
7580024 TAGATGAAAA
*
7580034 AATTGATAAAATA-ATA-ATAGAGT
1 AATTTATAAAATATATATATA-A-T
7580057 AATTTATAAAATATATATATAAT
1 AATTTATAAAATATATATATAAT
7580080 AATTT-TAAAA
1 AATTTATAAAA
7580090 AACGTGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.17
23 18 0.60
24 4 0.13
25 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (23 bp):
AATTTATAAAATATATATATAAT
Found at i:7580884 original size:29 final size:29
Alignment explanation
Indices: 7580826--7580884 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
7580816 TATCAATAAA
* **
7580826 TTAAGGATATAATTAGAATGTTTTGAAAT
1 TTAAGGATATAATTAGAATATGATGAAAT
*
7580855 TTAAGGAT-TAATATAGAATATGATGCAAT
1 TTAAGGATATAAT-TAGAATATGATGAAAT
7580884 T
1 T
7580885 AACTCTCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.39
Consensus pattern (29 bp):
TTAAGGATATAATTAGAATATGATGAAAT
Found at i:7581527 original size:18 final size:19
Alignment explanation
Indices: 7581485--7581527 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 19
7581475 TTAAAATTCT
7581485 AAAATT-TATATTTTTTAA
1 AAAATTATATATTTTTTAA
7581503 AAAATTATAT-TTTTTTAA
1 AAAATTATATATTTTTTAA
7581521 AAAATTA
1 AAAATTA
7581528 AAAGAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAAATTATATATTTTTTAA
Found at i:7592895 original size:51 final size:51
Alignment explanation
Indices: 7592840--7592947 Score: 171
Period size: 51 Copynumber: 2.1 Consensus size: 51
7592830 AATATTATTC
7592840 CAATATTTGGTAGTACAAAATTAGTCAAAAGCTCCAGAAAAGTTAATATAT
1 CAATATTTGGTAGTACAAAATTAGTCAAAAGCTCCAGAAAAGTTAATATAT
* ** * *
7592891 CAATATTTGGTCGTACAAAATTAGTTGAAAGCTCTAGAAGAGTTAATATAT
1 CAATATTTGGTAGTACAAAATTAGTCAAAAGCTCCAGAAAAGTTAATATAT
7592942 CAATAT
1 CAATAT
7592948 CTAAAAAGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (51 bp):
CAATATTTGGTAGTACAAAATTAGTCAAAAGCTCCAGAAAAGTTAATATAT
Found at i:7595263 original size:20 final size:20
Alignment explanation
Indices: 7595238--7595284 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
7595228 AAATCAAAGT
*
7595238 AGGTATCGATACAAAATTGC
1 AGGTATCGACACAAAATTGC
7595258 AGGTATCGACACAAAATTGC
1 AGGTATCGACACAAAATTGC
*
7595278 ACGTATC
1 AGGTATC
7595285 AATATTTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (20 bp):
AGGTATCGACACAAAATTGC
Found at i:7600172 original size:12 final size:11
Alignment explanation
Indices: 7600155--7600188 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
7600145 TTCTTTATAT
7600155 TTATTTATTTA
1 TTATTTATTTA
7600166 TTCATTTATTTA
1 TT-ATTTATTTA
*
7600178 TTATTTCTTTA
1 TTATTTATTTA
7600189 CTTTTTTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:7604912 original size:43 final size:43
Alignment explanation
Indices: 7604850--7605032 Score: 233
Period size: 43 Copynumber: 4.3 Consensus size: 43
7604840 TTATAGAAAT
* * *
7604850 AAACGCCGCTAAAGGTCATGACCTTTAGCGGTGCTTATCCCAC
1 AAACGCCGCTAAAGCTCATGTCCTTTAGCGGCGCTTATCCCAC
* * *
7604893 AAACGCCGCAAAAGCTCATGTTCTTTAGCGGCGGTTATCCCAC
1 AAACGCCGCTAAAGCTCATGTCCTTTAGCGGCGCTTATCCCAC
* *
7604936 AAACGCCGCTAAAGGTCATG-CTCTTTAGCGGCGCTTATTCCAC
1 AAACGCCGCTAAAGCTCATGTC-CTTTAGCGGCGCTTATCCCAC
* * * *
7604979 AAATGCCGCTAAAGCTCATGTTCTTTAGCGACGCTTATCCCAT
1 AAACGCCGCTAAAGCTCATGTCCTTTAGCGGCGCTTATCCCAC
*
7605022 AAGCGCCGCTA
1 AAACGCCGCTA
7605033 GCGGCGCTTA
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
43 119 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGCTCATGTCCTTTAGCGGCGCTTATCCCAC
Found at i:7604995 original size:86 final size:86
Alignment explanation
Indices: 7604850--7605032 Score: 278
Period size: 86 Copynumber: 2.1 Consensus size: 86
7604840 TTATAGAAAT
*
7604850 AAACGCCGCTAAAGGTCATGACCTTTAGCGGTGCTTATCCCACAAACGCCGCAAAAGCTCATGTT
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTATCCCACAAACGCCGCAAAAGCTCATGTT
* *
7604915 CTTTAGCGGCGGTTATCCCAC
66 CTTTAGCGACGCTTATCCCAC
* * *
7604936 AAACGCCGCTAAAGGTCATG-CTCTTTAGCGGCGCTTATTCCACAAATGCCGCTAAAGCTCATGT
1 AAACGCCGCTAAAGGTCATGAC-CTTTAGCGGCGCTTATCCCACAAACGCCGCAAAAGCTCATGT
*
7605000 TCTTTAGCGACGCTTATCCCAT
65 TCTTTAGCGACGCTTATCCCAC
*
7605022 AAGCGCCGCTA
1 AAACGCCGCTA
7605033 GCGGCGCTTA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
85 1 0.01
86 87 0.99
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (86 bp):
AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTATCCCACAAACGCCGCAAAAGCTCATGTT
CTTTAGCGACGCTTATCCCAC
Found at i:7605034 original size:27 final size:27
Alignment explanation
Indices: 7605004--7605059 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
7604994 TCATGTTCTT
* *
7605004 TAGCGACGCTTATCCCATAAGCGCCGC
1 TAGCGACGCTTATCCCACAAACGCCGC
* *
7605031 TAGCGGCGCTTATTCCACAAACGCCGC
1 TAGCGACGCTTATCCCACAAACGCCGC
7605058 TA
1 TA
7605060 AATGTCATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.36, G:0.21, T:0.20
Consensus pattern (27 bp):
TAGCGACGCTTATCCCACAAACGCCGC
Found at i:7605100 original size:70 final size:70
Alignment explanation
Indices: 7604961--7605102 Score: 223
Period size: 70 Copynumber: 2.0 Consensus size: 70
7604951 TCATGCTCTT
* *
7604961 TAGCGGCGCTTATTCCACAAATGCCGCTAAAGCTCATGTTCTTTAGCGACGCTTATCCCATAAGC
1 TAGCGGCGCTTATTCCACAAACGCCGCTAAAGCTCATGTTCTTTAGCGACGCTTATCCCACAAGC
7605026 GCCGC
66 GCCGC
* *
7605031 TAGCGGCGCTTATTCCACAAACGCCGCTAAATG-TCATGTTCTTTAGCGGCGCTTATCCCACAAT
1 TAGCGGCGCTTATTCCACAAACGCCGCTAAA-GCTCATGTTCTTTAGCGACGCTTATCCCACAAG
*
7605095 TGCCGC
65 CGCCGC
7605101 TA
1 TA
7605103 TAGATCTTGA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
70 65 0.98
71 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (70 bp):
TAGCGGCGCTTATTCCACAAACGCCGCTAAAGCTCATGTTCTTTAGCGACGCTTATCCCACAAGC
GCCGC
Found at i:7605119 original size:113 final size:113
Alignment explanation
Indices: 7604918--7605145 Score: 323
Period size: 113 Copynumber: 2.0 Consensus size: 113
7604908 TCATGTTCTT
* *
7604918 TAGCGGCGGTTATCCCACAAACGCCGCTAAAGGTCATGCTCTTTAGCGGCGCTTATTCCACAAAT
1 TAGCGGCGCTTATCCCACAAACGCCGCTAAAGGTCATGCTCTTTAGCGGCGCTTATCCCACAAAT
* * *
7604983 GCCGCTAAAGCTCATGTTCTTTAGCGACGCTTATCCCATAAGCGCCGC
66 GCCGCTAAAGATCATGCTCTTTAGCGACGCTTATCCCACAAGCGCCGC
* * * *
7605031 TAGCGGCGCTTATTCCACAAACGCCGCTAAATGTCATGTTCTTTAGCGGCGCTTATCCCACAATT
1 TAGCGGCGCTTATCCCACAAACGCCGCTAAAGGTCATGCTCTTTAGCGGCGCTTATCCCACAAAT
* * * *
7605096 GCCGCTATAGATCTTGACT-TTTAGCGGCGCTTTTCCCACAAGCGCCGC
66 GCCGCTAAAGATCATG-CTCTTTAGCGACGCTTATCCCACAAGCGCCGC
7605144 TA
1 TA
7605146 AAGGTCATGT
Statistics
Matches: 101, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
113 100 0.99
114 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (113 bp):
TAGCGGCGCTTATCCCACAAACGCCGCTAAAGGTCATGCTCTTTAGCGGCGCTTATCCCACAAAT
GCCGCTAAAGATCATGCTCTTTAGCGACGCTTATCCCACAAGCGCCGC
Found at i:7605159 original size:156 final size:156
Alignment explanation
Indices: 7604875--7605170 Score: 427
Period size: 156 Copynumber: 1.9 Consensus size: 156
7604865 TCATGACCTT
* *
7604875 TAGCGGTGCTTATCCCACAAACGCCGCAAAAGCTCATGTTCTTTAGCGGCGGTTATCCCACAAAC
1 TAGCGGCGCTTATCCCACAAACGCCGCAAAAGCTCATGTTCTTTAGCGGCGCTTATCCCACAAAC
* *
7604940 GCCGCTAAAGGTCATGCTCTTTAGCGGCGCTTATTCCACAAATGCCGCTAAAGCTCATGTTCTTT
66 GCCGCTAAAGATCATGCTCTTTAGCGGCGCTTATTCCACAAACGCCGCTAAAGCTCATGTTCTTT
7605005 AGCGACGCTTATCCCATAAGCGCCGC
131 AGCGACGCTTATCCCATAAGCGCCGC
* * *
7605031 TAGCGGCGCTTATTCCACAAACGCCGCTAAATG-TCATGTTCTTTAGCGGCGCTTATCCCACAAT
1 TAGCGGCGCTTATCCCACAAACGCCGC-AAAAGCTCATGTTCTTTAGCGGCGCTTATCCCACAAA
* * * * *
7605095 TGCCGCTATAGATCTTGACT-TTTAGCGGCGCTT-TTCCCACAAGCGCCGCTAAAGGTCATGTTC
65 CGCCGCTAAAGATCATG-CTCTTTAGCGGCGCTTATT-CCACAAACGCCGCTAAAGCTCATGTTC
*
7605158 TTTAGCGGCGCTT
128 TTTAGCGACGCTT
7605171 TTTTCAAAAA
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
155 2 0.02
156 116 0.94
157 6 0.05
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (156 bp):
TAGCGGCGCTTATCCCACAAACGCCGCAAAAGCTCATGTTCTTTAGCGGCGCTTATCCCACAAAC
GCCGCTAAAGATCATGCTCTTTAGCGGCGCTTATTCCACAAACGCCGCTAAAGCTCATGTTCTTT
AGCGACGCTTATCCCATAAGCGCCGC
Found at i:7605171 original size:43 final size:43
Alignment explanation
Indices: 7605031--7605172 Score: 171
Period size: 43 Copynumber: 3.3 Consensus size: 43
7605021 TAAGCGCCGC
*
7605031 TAGCGGCGCTTATT-CCACAAACGCCGCTAAATGTCATGTTCTT
1 TAGCGGCGCTT-TTCCCACAAACGCCGCTAAAGGTCATGTTCTT
* ** * * * *
7605074 TAGCGGCGCTTATCCCACAATTGCCGCTATAGATCTTG-ACTTT
1 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGTCATGTTC-TT
*
7605117 TAGCGGCGCTTTTCCCACAAGCGCCGCTAAAGGTCATGTTCTT
1 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGTCATGTTCTT
7605160 TAGCGGCGCTTTT
1 TAGCGGCGCTTTT
7605173 TTCAAAAACG
Statistics
Matches: 81, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 2 0.02
43 78 0.96
44 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (43 bp):
TAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGTCATGTTCTT
Found at i:7605201 original size:86 final size:85
Alignment explanation
Indices: 7605031--7605215 Score: 219
Period size: 86 Copynumber: 2.2 Consensus size: 85
7605021 TAAGCGCCGC
* * **
7605031 TAGCGGCGCTTATTCCACAAACGCCGCTAAATGTCATGTTCTTTAGCGGCGCTTATCCCACAATT
1 TAGCGGCGCTT-TTCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTATCCCAAAAAC
* **
7605096 GCCGCTATAGATCTTGACTTT
65 GCCGATATAGATCGCGACTTT
* * **
7605117 TAGCGGCGCTTTTCCCACAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTTCAAAAAC
1 TAGCGGCGCTTTT-CCACAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTATCCCAAAAAC
* *
7605182 GCC-ATAATTGATGGCGACTTT
65 GCCGAT-ATAGATCGCGACTTT
7605203 TAGCGGCGCTTTT
1 TAGCGGCGCTTTT
7605216 TCGTAAAACG
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
85 3 0.04
86 81 0.96
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (85 bp):
TAGCGGCGCTTTTCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTATCCCAAAAACG
CCGATATAGATCGCGACTTT
Found at i:7612642 original size:19 final size:20
Alignment explanation
Indices: 7612618--7612661 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
7612608 CGTCGGGTTT
*
7612618 GGGGAACTATTAGGGA-TTA
1 GGGGAAATATTAGGGATTTA
*
7612637 GGGGAAATTTTAGGGATTTA
1 GGGGAAATATTAGGGATTTA
7612657 GGGGA
1 GGGGA
7612662 GATGACAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.30, C:0.02, G:0.41, T:0.27
Consensus pattern (20 bp):
GGGGAAATATTAGGGATTTA
Found at i:7613205 original size:20 final size:20
Alignment explanation
Indices: 7613180--7613217 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7613170 AGTAATGCAT
*
7613180 TTTTAAAAAATAATTACACA
1 TTTTAAAAAATAAATACACA
*
7613200 TTTTAAAAGATAAATACA
1 TTTTAAAAAATAAATACA
7613218 TCAATATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
TTTTAAAAAATAAATACACA
Found at i:7613511 original size:7 final size:7
Alignment explanation
Indices: 7613501--7613556 Score: 58
Period size: 7 Copynumber: 8.0 Consensus size: 7
7613491 CCGTAAATCT
7613501 TAAACCC
1 TAAACCC
**
7613508 TAAACTA
1 TAAACCC
*
7613515 TAAACCT
1 TAAACCC
7613522 TAAACCC
1 TAAACCC
* *
7613529 CAAACCG
1 TAAACCC
*
7613536 TAAACCT
1 TAAACCC
7613543 TAAACCC
1 TAAACCC
7613550 TAAACCC
1 TAAACCC
7613557 GTCAATTAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:7613511 original size:14 final size:14
Alignment explanation
Indices: 7613485--7613555 Score: 65
Period size: 14 Copynumber: 5.1 Consensus size: 14
7613475 ATACTGTAAG
*
7613485 CCTT-AACCGTAAA
1 CCTTAAACCCTAAA
*
7613498 TCTTAAACCCTAAA
1 CCTTAAACCCTAAA
*
7613512 -CTATAAACCTTAAA
1 CCT-TAAACCCTAAA
** *
7613526 CCCCAAACCGTAAA
1 CCTTAAACCCTAAA
7613540 CCTTAAACCCTAAA
1 CCTTAAACCCTAAA
7613554 CC
1 CC
7613556 CGTCAATTAA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
13 5 0.11
14 40 0.87
15 1 0.02
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.21
Consensus pattern (14 bp):
CCTTAAACCCTAAA
Found at i:7613523 original size:21 final size:21
Alignment explanation
Indices: 7613489--7613555 Score: 89
Period size: 21 Copynumber: 3.2 Consensus size: 21
7613479 TGTAAGCCTT
* *
7613489 AACCGTAAATCTTAAACCCTA
1 AACCATAAACCTTAAACCCTA
* *
7613510 AACTATAAACCTTAAACCCCA
1 AACCATAAACCTTAAACCCTA
*
7613531 AACCGTAAACCTTAAACCCTA
1 AACCATAAACCTTAAACCCTA
7613552 AACC
1 AACC
7613556 CGTCAATTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.45, C:0.33, G:0.03, T:0.19
Consensus pattern (21 bp):
AACCATAAACCTTAAACCCTA
Found at i:7614319 original size:114 final size:110
Alignment explanation
Indices: 7614165--7614478 Score: 245
Period size: 114 Copynumber: 2.8 Consensus size: 110
7614155 AAAGTTGCTC
* ** * * * *
7614165 TATAGCGGCGTTTTCAAATAAGCGCCACTAATGCCTCTATAGGTCAAGCTGGAACGATGCGTTTT
1 TATAGCAGCGTTTTCAGGTAAGCACCGCTAACG-CGCTATAGGTCAAGC-GGAACGATGCGTTTT
* * *
7614230 GGTCAAATTTTTTGCGGCGCTTCAGTAGAAGCGCCTCTAAAAGCTGATA
64 GGTCAAATTTTTTGCGGCGCTTCAGT-GAAGCGCCGCTAAAAG-AGAGA
* * * * * *
7614279 TATAGCAGCGTTTTCGGGTAAGCACCGCTAACGGCGCTATAGCTCAAGACGAAACGTTGCATTTC
1 TATAGCAGCGTTTTCAGGTAAGCACCGCTAAC-GCGCTATAGGTCAAG-CGGAACGATGCGTTTT
* * ** * * ** *
7614344 GGTTTAAAATTTTCTGAC-G-TTTTTAGTTAAGCGCCGCTAATTGAGGGA
64 GG--TCAAATTTTTTG-CGGCGCTTCAGTGAAGCGCCGCTAAAAGAGAGA
* * * *
7614392 TATAGCGGCGTTTTCAGGTAAGCACCGCTAACGCTCTATAAGTCAAGCCGGAACGATGTGTTTTG
1 TATAGCAGCGTTTTCAGGTAAGCACCGCTAACGCGCTATAGGTCAAG-CGGAACGATGCGTTTTG
* *
7614457 GTCAAAATTTTTACGGCGCTTC
65 GTCAAATTTTTTGCGGCGCTTC
7614479 TAGCTGATAT
Statistics
Matches: 150, Mismatches: 43, Indels: 17
0.71 0.20 0.08
Matches are distributed among these distances:
109 1 0.01
110 9 0.06
111 2 0.01
112 25 0.17
113 32 0.21
114 62 0.41
115 7 0.05
116 11 0.07
117 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (110 bp):
TATAGCAGCGTTTTCAGGTAAGCACCGCTAACGCGCTATAGGTCAAGCGGAACGATGCGTTTTGG
TCAAATTTTTTGCGGCGCTTCAGTGAAGCGCCGCTAAAAGAGAGA
Found at i:7622235 original size:21 final size:21
Alignment explanation
Indices: 7622206--7622246 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7622196 TTTTCTTTAT
*
7622206 TTTTCTTTTAAATTTTAATCA
1 TTTTCTTTTAAATTATAATCA
* *
7622227 TTTTGTTTTACATTATAATC
1 TTTTCTTTTAAATTATAATC
7622247 TTCTAAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.10, G:0.02, T:0.61
Consensus pattern (21 bp):
TTTTCTTTTAAATTATAATCA
Found at i:7623867 original size:20 final size:21
Alignment explanation
Indices: 7623842--7623890 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
7623832 CAAAGGCATT
7623842 TATCGATACCTGGT-AAAAGG
1 TATCGATACCTGGTGAAAAGG
* **
7623862 TATCGATACGTTTTGAAAAGG
1 TATCGATACCTGGTGAAAAGG
7623883 TATCGATA
1 TATCGATA
7623891 TTTTTTGTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (21 bp):
TATCGATACCTGGTGAAAAGG
Found at i:7623955 original size:18 final size:17
Alignment explanation
Indices: 7623925--7623959 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7623915 ATCAAGTTAG
7623925 AATACAAAAATGGTATC
1 AATACAAAAATGGTATC
*
7623942 AATATCAAAGATGGTATC
1 AATA-CAAAAATGGTATC
7623960 GATAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.49, C:0.11, G:0.14, T:0.26
Consensus pattern (17 bp):
AATACAAAAATGGTATC
Found at i:7624430 original size:25 final size:26
Alignment explanation
Indices: 7624393--7624450 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
7624383 TTTAAATAAG
*
7624393 TTAACTT-ATAAAATAAT-TATATATT
1 TTAACTTAAAAAAATAATATAT-TATT
*
7624418 TTAATTTAAAAAAATAATATATTATT
1 TTAACTTAAAAAAATAATATATTATT
7624444 TATAACT
1 T-TAACT
7624451 ATGTAAAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 6 0.22
26 14 0.52
27 7 0.26
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (26 bp):
TTAACTTAAAAAAATAATATATTATT
Found at i:7624593 original size:25 final size:24
Alignment explanation
Indices: 7624547--7624593 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
7624537 TAAACATAAA
*
7624547 AAATATTTAAAATGATCTAAATGT
1 AAATATTTAAAATGATCCAAATGT
**
7624571 AAATATCTTAAAATTTTCCAAAT
1 AAATAT-TTAAAATGATCCAAAT
7624594 TGTTTCCTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 6 0.32
25 13 0.68
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATTTAAAATGATCCAAATGT
Found at i:7626324 original size:29 final size:30
Alignment explanation
Indices: 7626276--7626334 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
7626266 TATGATTTAA
**
7626276 TGTACAATTGTATATGTG-AACTTTGATTT
1 TGTACAATTGTATACATGAAACTTTGATTT
*
7626305 TGTACAATTGTATACATGAAAGTTTGATTT
1 TGTACAATTGTATACATGAAACTTTGATTT
7626335 GATCAAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.46
Consensus pattern (30 bp):
TGTACAATTGTATACATGAAACTTTGATTT
Found at i:7626509 original size:29 final size:32
Alignment explanation
Indices: 7626468--7626535 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
7626458 TTTGTACCAC
* *
7626468 AATTAAACTTTTACATATATAA-T-TACACTA
1 AATTAAACGTTTACATATAGAATTGTACACTA
* *
7626498 AATTAAA-GTTTATATATAGAATTGTACATTA
1 AATTAAACGTTTACATATAGAATTGTACACTA
7626529 AATTAAA
1 AATTAAA
7626536 AAATCATGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 11 0.34
30 8 0.25
31 13 0.41
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (32 bp):
AATTAAACGTTTACATATAGAATTGTACACTA
Found at i:7638184 original size:22 final size:23
Alignment explanation
Indices: 7638151--7638194 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7638141 AACTGGATAT
*
7638151 ATATATATATATTAAAAATATGC
1 ATATATATATATGAAAAATATGC
*
7638174 ATAT-TATATATGGAAAATATG
1 ATATATATATATGAAAAATATG
7638195 TGTATGTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (23 bp):
ATATATATATATGAAAAATATGC
Found at i:7639792 original size:89 final size:89
Alignment explanation
Indices: 7639651--7639882 Score: 365
Period size: 89 Copynumber: 2.6 Consensus size: 89
7639641 TGCGATATTC
* *
7639651 GATCTATTTCACGCCAATACATGAAGACAAGACCTGTTTTCTTCGATCTACTTCGCCACCAGTAT
1 GATCTACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
7639716 GGGAAGACAAGATCTGTTACCTTT
66 GGGAAGACAAGATCTGTTACCTTT
*
7639740 GATCTACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATTTACTTCGCCACCAGTAT
1 GATCTACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
* *
7639805 GGGAAGAGAAGATCTGTTATCTTT
66 GGGAAGACAAGATCTGTTACCTTT
* * * ** *
7639829 GATCTACTTCATGCCAGTACATGAAGACAAGATCTATTTTCTTCAATCTACTTC
1 GATCTACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATCTACTTC
7639883 ACGCCAATAC
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 131 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (89 bp):
GATCTACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
GGGAAGACAAGATCTGTTACCTTT
Found at i:7639847 original size:133 final size:133
Alignment explanation
Indices: 7639673--7639996 Score: 414
Period size: 133 Copynumber: 2.4 Consensus size: 133
7639663 GCCAATACAT
* * * * ** *
7639673 GAAGACAAGACCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTACCT
1 GAAGACAAGATCTGTTATCTTTGATCTACTTC-ACACCAGTACAGGAAGACAAGATCTATTACCT
** ** *
7639738 TTGATCTACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATTTACTTCGCCACCAGT
65 TCAATCTACTTCACGCCAATACATGAAGACAAGACCTGCTCACTTCGATCTACTTCGCCACCAGT
7639803 ATGG
130 ATGG
* ** * **
7639807 GAAGAGAAGATCTGTTATCTTTGATCTACTTCATGCCAGTACATGAAGACAAGATCTATTTTCTT
1 GAAGACAAGATCTGTTATCTTTGATCTACTTCACACCAGTACAGGAAGACAAGATCTATTACCTT
* **
7639872 CAATCTACTTCACGCCAATACATGAAGATAAGATTTGCTCACTTCGATCTACTTCGCCACCAGTA
66 CAATCTACTTCACGCCAATACATGAAGACAAGACCTGCTCACTTCGATCTACTTCGCCACCAGTA
7639937 TGG
131 TGG
* * * *
7639940 GAAGACAAGATCTGTTATCTTTGATCTACTTCACGCTAATACATGAAGACAAGATCT
1 GAAGACAAGATCTGTTATCTTTGATCTACTTCACACCAGTACAGGAAGACAAGATCT
7639997 GCATCTTCGA
Statistics
Matches: 165, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
133 137 0.83
134 28 0.17
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (133 bp):
GAAGACAAGATCTGTTATCTTTGATCTACTTCACACCAGTACAGGAAGACAAGATCTATTACCTT
CAATCTACTTCACGCCAATACATGAAGACAAGACCTGCTCACTTCGATCTACTTCGCCACCAGTA
TGG
Found at i:7640146 original size:44 final size:44
Alignment explanation
Indices: 7640026--7640242 Score: 220
Period size: 45 Copynumber: 4.9 Consensus size: 44
7640016 GTTTTCTTCA
* * * *
7640026 ATCTACTTCACGCCAATACATGAAGATAAGATTTGCTCTCTTTG
1 ATCTACTTCACGCCAGTACATGAAGATAAGATCTGTTGTCTTTG
* * *** *
7640070 ATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTGTCTTTG
1 ATCTACTTC-ACGCCAGTACATGAAGATAAGATCTGTTGTCTTTG
*
7640115 ATCTACTTCACGCCAGTACATGAAGATAAGATCTGCTT-TCTTGG
1 ATCTACTTCACGCCAGTACATGAAGATAAGATCTG-TTGTCTTTG
* * *** * *
7640159 ATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTG
1 ATCTACTTC-ACGCCAGTACATGAAGATAAGATCTGTTGTCTTTG
* *
7640204 ATGTACTTCACGCCAGTACATGAAGATAAGATCTTTTGT
1 ATCTACTTCACGCCAGTACATGAAGATAAGATCTGTTGT
7640243 ATTCAACCTG
Statistics
Matches: 136, Mismatches: 33, Indels: 8
0.77 0.19 0.05
Matches are distributed among these distances:
44 67 0.49
45 69 0.51
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
ATCTACTTCACGCCAGTACATGAAGATAAGATCTGTTGTCTTTG
Found at i:7640146 original size:152 final size:152
Alignment explanation
Indices: 7639865--7640150 Score: 518
Period size: 152 Copynumber: 1.9 Consensus size: 152
7639855 ACAAGATCTA
7639865 TTTTCTTCAATCTACTTCACGCCAATACATGAAGATAAGATTTGCTCACTTCGATCTACTTCGCC
1 TTTTCTTCAATCTACTTCACGCCAATACATGAAGATAAGATTTGCTCACTTCGATCTACTTCGCC
*
7639930 ACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCTAATACATGAAGACAAGAT
66 ACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGAT
7639995 CTGCATCTTCGATCCACTTCAG
131 CTGCATCTTCGATCCACTTCAG
* *
7640017 TTTTCTTCAATCTACTTCACGCCAATACATGAAGATAAGATTTGCTCTCTTTGATCTACTTCGCC
1 TTTTCTTCAATCTACTTCACGCCAATACATGAAGATAAGATTTGCTCACTTCGATCTACTTCGCC
* * *
7640082 ACCAGTATGGGAAGACAAGATCTGTTGTCTTTGATCTACTTCACGCCAGTACATGAAGATAAGAT
66 ACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGAT
7640147 CTGC
131 CTGC
7640151 TTTCTTGGAT
Statistics
Matches: 128, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
152 128 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (152 bp):
TTTTCTTCAATCTACTTCACGCCAATACATGAAGATAAGATTTGCTCACTTCGATCTACTTCGCC
ACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGAT
CTGCATCTTCGATCCACTTCAG
Found at i:7640177 original size:89 final size:89
Alignment explanation
Indices: 7640026--7640237 Score: 370
Period size: 89 Copynumber: 2.4 Consensus size: 89
7640016 GTTTTCTTCA
* * *
7640026 ATCTACTTCACGCCAATACATGAAGATAAGATTTGCTCTCTTTGATCTACTTCGCCACCAGTATG
1 ATCTACTTCACGCCAGTACATGAAGATAAGATCTGCTCTCTTGGATCTACTTCGCCACCAGTATG
*
7640091 GGAAGACAAGATCTGTTGTCTTTG
66 GGAAGACAAGATCTGTTATCTTTG
*
7640115 ATCTACTTCACGCCAGTACATGAAGATAAGATCTGCTTTCTTGGATCTACTTCGCCACCAGTATG
1 ATCTACTTCACGCCAGTACATGAAGATAAGATCTGCTCTCTTGGATCTACTTCGCCACCAGTATG
7640180 GGAAGACAAGATCTGTTATCTTTG
66 GGAAGACAAGATCTGTTATCTTTG
*
7640204 ATGTACTTCACGCCAGTACATGAAGATAAGATCT
1 ATCTACTTCACGCCAGTACATGAAGATAAGATCT
7640238 TTTGTATTCA
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 117 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (89 bp):
ATCTACTTCACGCCAGTACATGAAGATAAGATCTGCTCTCTTGGATCTACTTCGCCACCAGTATG
GGAAGACAAGATCTGTTATCTTTG
Found at i:7647029 original size:22 final size:23
Alignment explanation
Indices: 7646996--7647039 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7646986 AACTGGATAT
*
7646996 ATATATATATATTAAAAATATGC
1 ATATATATATATGAAAAATATGC
*
7647019 ATAT-TATATATGGAAAATATG
1 ATATATATATATGAAAAATATG
7647040 TGTATGTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (23 bp):
ATATATATATATGAAAAATATGC
Found at i:7653545 original size:48 final size:48
Alignment explanation
Indices: 7653476--7653693 Score: 230
Period size: 47 Copynumber: 4.6 Consensus size: 48
7653466 TAGGACGCCA
* * * * * *
7653476 ATGCCATATCCCAAATATGGTCTTACATGGGATCACATATCGGTGTCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGAGCCG
** * *
7653524 ATGCCATGTCCCAGACATGGTCTTA-A-GCTAGCAC-TCATCTCGAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACAT-ATC-GGAGCCG
* * *
7653571 ATACCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGAGCCG
* * *
7653619 ATGCCATGTCCCAGACATGGTCTTACACTGGCA-CTCATCTC-GAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGGATCACATATCGGAGCCG
7653666 ATGCCATGTCCCAGACATGGTCTTACAT
1 ATGCCATGTCCCAGACATGGTCTTACAT
7653694 TGACTCTCCT
Statistics
Matches: 141, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 9 0.06
47 59 0.42
48 59 0.42
49 12 0.09
50 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGAGCCG
Found at i:7653584 original size:47 final size:48
Alignment explanation
Indices: 7653524--7653792 Score: 237
Period size: 50 Copynumber: 5.6 Consensus size: 48
7653514 ATCGGTGTCA
7653524 ATGCCATGTCCCAGACATGGTCTTA-AGCTAGCACTCATCTCGAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAGCTAGCACTCATCTCGAGCCG
* ** * * * *
7653571 ATACCATGTCCCAGACATGGTCTTACATGGGATCACAT-ATC-GGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACA-GCTAGCAC-TCATCTCGAGCCG
*
7653619 ATGCCATGTCCCAGACATGGTCTTACA-CTGGCACTCATCTCGAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAGCTAGCACTCATCTCGAGCCG
** * * *
7653666 ATGCCATGTCCCAGACATGGTCTTACATTGACTCTC-CTC-TGTCCGTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACA--G-CTAGCACTCATCT-CGAGCCG
** * * *
7653716 ATGCCATGTCCCAGACATCATCTTACA-CTAGCACTCCTCGGTCTGTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACAGCTAGCACTCATC--TC-GAGCCG
*
7653766 ATGCCATGTCCTAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
7653793 TTGTCACACT
Statistics
Matches: 179, Mismatches: 28, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 9 0.05
47 58 0.32
48 32 0.18
49 11 0.06
50 65 0.36
51 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACAGCTAGCACTCATCTCGAGCCG
Found at i:7653653 original size:95 final size:95
Alignment explanation
Indices: 7653476--7653793 Score: 390
Period size: 95 Copynumber: 3.3 Consensus size: 95
7653466 TAGGACGCCA
* * * *
7653476 ATGCCATATCCCAAATATGGTCTTACATGGGATCACATATCGGTGTCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGTGTCGATGCCATGTCCCAGACA
7653541 TGGTCTTA-AGCTAGCACTCATCTCGAGCCG
66 TGGTCTTACA-CTAGCACTCATCTCGAGCCG
*
7653571 ATACCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGTGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGTGTCGATGCCATGTCCCAGACA
*
7653636 TGGTCTTACACTGGCACTCATCTCGAGCCG
66 TGGTCTTACACTAGCACTCATCTCGAGCCG
* * * * *
7653666 ATGCCATGTCCCAGACATGGTCTTACAT-TGACTCTCCTCTGTCCGTG-CTGATGCCATGTCCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGA-TC-AC-ATATCGGTGTC-GATGCCATGTCCCA
** * * *
7653729 GACATCATCTTACACTAGCACTCCTCGGTCTGTGCTG
62 GACATGGTCTTACACTAGCACTCATC--TC-GAGCCG
*
7653766 ATGCCATGTCCTAGACATGGTCTTACAT
1 ATGCCATGTCCCAGACATGGTCTTACAT
7653794 TGTCACACTC
Statistics
Matches: 196, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
94 2 0.01
95 116 0.59
96 3 0.02
97 42 0.21
99 2 0.01
100 31 0.16
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGTGTCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCACTCATCTCGAGCCG
Found at i:7656352 original size:15 final size:15
Alignment explanation
Indices: 7656332--7656364 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7656322 TGCTATCAAC
7656332 ATGTCATCAACATAA
1 ATGTCATCAACATAA
7656347 ATGTCATCAACATAA
1 ATGTCATCAACATAA
7656362 ATG
1 ATG
7656365 AGTAGATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.27
Consensus pattern (15 bp):
ATGTCATCAACATAA
Found at i:7669028 original size:57 final size:56
Alignment explanation
Indices: 7668915--7669042 Score: 184
Period size: 57 Copynumber: 2.3 Consensus size: 56
7668905 ACATTACCAA
* *
7668915 TTTATACCAATTTCACATAACTCATTCAATGTCATATTCTATCGTCAATCCATAAG
1 TTTATACCAATTTCACATAACTCATTCAATGTCATATTCTATCATCAATCAATAAG
* * * *
7668971 TTTAAACCAATTTCACATAATTCATTTAAGTGTCATATTCTATCATTAATCAATAAG
1 TTTATACCAATTTCACATAACTCATTCAA-TGTCATATTCTATCATCAATCAATAAG
*
7669028 TTTATATCAATTTCA
1 TTTATACCAATTTCA
7669043 AGTGAATTTC
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
56 26 0.41
57 37 0.59
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.41
Consensus pattern (56 bp):
TTTATACCAATTTCACATAACTCATTCAATGTCATATTCTATCATCAATCAATAAG
Found at i:7673275 original size:24 final size:24
Alignment explanation
Indices: 7673230--7673290 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
7673220 ATATACGTAC
* *
7673230 ATATATATATATATAAGTTAATAA
1 ATATATAGATATATAAGATAATAA
7673254 ATATATAGATCATA-AAGATAATAA
1 ATATATAGAT-ATATAAGATAATAA
* *
7673278 TTATATATATATA
1 ATATATAGATATA
7673291 GAAATTATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 3 0.09
24 26 0.81
25 3 0.09
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (24 bp):
ATATATAGATATATAAGATAATAA
Found at i:7673958 original size:19 final size:20
Alignment explanation
Indices: 7673934--7673977 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
7673924 AATCACATCT
7673934 TCTAAGATT-ACATATCATA
1 TCTAAGATTCACATATCATA
*
7673953 TCTAAGATTGCATATATCATA
1 TCTAAGATT-CACATATCATA
7673974 TCTA
1 TCTA
7673978 GGCACTACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.41
21 13 0.59
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.39
Consensus pattern (20 bp):
TCTAAGATTCACATATCATA
Found at i:7674142 original size:39 final size:39
Alignment explanation
Indices: 7674030--7674143 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 39
7674020 GTTTGGACAA
*
7674030 AAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTTATGT
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCG-TTTATGT
*
7674070 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGTTTCCA-GT
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTT--ATGT
* *
7674110 AAAGCGCCGCTAAAAAT-TAGCATTAGCGGCGTTT
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTT
7674144 TTTGGAAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
39 19 0.28
40 47 0.70
41 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (39 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTATGT
Found at i:7674286 original size:40 final size:39
Alignment explanation
Indices: 7674198--7674341 Score: 189
Period size: 40 Copynumber: 3.5 Consensus size: 39
7674188 TGTACCTTTT
* *
7674198 AGATCTTTAGCGGCGTTTTTAAAAAAAGCGCCGCTAATGCTC
1 AGATCTTTAGCGGCGTTTTTAGAAGAA---CCGCTAATGCTC
7674240 AGATCTTTAGCGGCGTTTTTGAGAAGAACCGCTAATGCTC
1 AGATCTTTAGCGGCGTTTTT-AGAAGAACCGCTAATGCTC
* **
7674280 ATATCTTTAGCGGCGTTTTTTAGAAAGCGCCGCTAATGCTC
1 AGATCTTTAGCGGCG-TTTTTAG-AAGAACCGCTAATGCTC
7674321 AGATCTTTAGCGGCGTTTTTA
1 AGATCTTTAGCGGCGTTTTTA
7674342 AAAAAGCGCC
Statistics
Matches: 93, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
40 34 0.37
41 34 0.37
42 20 0.22
43 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (39 bp):
AGATCTTTAGCGGCGTTTTTAGAAGAACCGCTAATGCTC
Found at i:7674313 original size:41 final size:41
Alignment explanation
Indices: 7674198--7674353 Score: 233
Period size: 41 Copynumber: 3.8 Consensus size: 41
7674188 TGTACCTTTT
7674198 AGATCTTTAGCGGCGTTTTTAAAAAAAGCGCCGCTAATGCTC
1 AGATCTTTAGCGGCGTTTTT-AAAAAAGCGCCGCTAATGCTC
* * **
7674240 AGATCTTTAGCGGCGTTTTT-GAGAAGAACCGCTAATGCTC
1 AGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTC
* * *
7674280 ATATCTTTAGCGGCGTTTTTTAGAAAGCGCCGCTAATGCTC
1 AGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTC
7674321 AGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
1 AGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
7674354 AAAAACATTT
Statistics
Matches: 100, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
40 35 0.35
41 45 0.45
42 20 0.20
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (41 bp):
AGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTC
Found at i:7675092 original size:21 final size:21
Alignment explanation
Indices: 7675068--7675110 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7675058 NNATTTAGAG
* *
7675068 GTTAGTGGTTTGGGGTTAAGA
1 GTTAGTGATTTAGGGTTAAGA
*
7675089 GTTAGTGATTTAGGGTTTAGA
1 GTTAGTGATTTAGGGTTAAGA
7675110 G
1 G
7675111 ATTCAGGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.40
Consensus pattern (21 bp):
GTTAGTGATTTAGGGTTAAGA
Found at i:7675919 original size:283 final size:288
Alignment explanation
Indices: 7675399--7676040 Score: 931
Period size: 284 Copynumber: 2.2 Consensus size: 288
7675389 TTATTTTTGG
*
7675399 GCTTTCGCCTTTCGCCGGGCTTGAGAGCTTGTGCTGCTTCCTTCCTTCCTTGGATGTCTGAGACC
1 GCTTTCGCCTTTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACC
* * *
7675464 TTTTATGACTTCTATATGATTGTTGTTTTCATTATTTGTGCTTGAAAACCCAGTCACTTCCTCAG
66 TTTTATGACTTCTATATGATTGTTGTTTTCATTATTTGCGCTTGAAAACCAAATCACTTCCTCAG
*
7675529 AAATCTGGTTGTACATTTTTTCCCTTTTTTTTTTTCAGTTCAATTGATAAACGATATTCTTAAAA
131 AAATCTGGTTGTACATTTTTTCCCTTTTTTTTTTTCAGTTCAATTGATAAACGATATTCATAAAA
**
7675594 TTCAGTCAAAGGAAAATATATTTGTTGTGTATGGGTTTATGATGATAA-TCCAAAGGCTTGTTTC
196 TTCAGTCAAAGGAAAATATATTTCATGTGTATGGGTTTATGATGATAAGTCCAAAGGCTTGTTTC
**
7675658 TCAAAACATTAGCAGTGGCCGTCTAAGA
261 TCAAAACATTAGCAGTGGCCACCTAAGA
*
7675686 GCTTTCGCCTTTCGCCAGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACC
1 GCTTTCGCCTTTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACC
* * *** *
7675751 TTTTATGACTTGTATAT-AGTT-TT-TTTTCATTATTTGCGCTTGAAAATCAAATTTTTTTCTCA
66 TTTTATGACTTCTATATGA-TTGTTGTTTTCATTATTTGCGCTTGAAAACCAAATCACTTCCTCA
* *
7675813 GAAATCTGGTTGTA-TTTTTTTCCC-TTTTTTTTTTCAGTTCCATTGATAAACGATATTCATAAA
130 GAAATCTGGTTGTACATTTTTTCCCTTTTTTTTTTTCAGTTCAATTGATAAACGATATTCATAAA
* * * *** *
7675876 ATTGAGTCAAATGATAATATATTTCATGTGTATGGGTTTATGATGATAAGTTGTAGGGCTTGTTT
195 ATTCAGTCAAAGGAAAATATATTTCATGTGTATGGGTTTATGATGATAAGTCCAAAGGCTTGTTT
* *
7675941 CTCAAAACATTCGCAGTGGCCACCTGAGA
260 CTCAAAACATTAGCAGTGGCCACCTAAGA
* * *
7675970 GCTTTCGCTTTTCTCCGGGCTTGAGAG-TATGTGCTGCTT-TTATCCTTCCTTGGATGTCTGAGA
1 GCTTTCGCCTTTCGCCGGGCTTGAGAGCT-TGTGCTGCTTCAT-TCCTTCCTTGGATGTCTGAGA
7676033 CCTTTTAT
64 CCTTTTAT
7676041 TATATCTTTA
Statistics
Matches: 320, Mismatches: 31, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
283 83 0.26
284 108 0.34
285 45 0.14
286 3 0.01
287 81 0.25
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.42
Consensus pattern (288 bp):
GCTTTCGCCTTTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACC
TTTTATGACTTCTATATGATTGTTGTTTTCATTATTTGCGCTTGAAAACCAAATCACTTCCTCAG
AAATCTGGTTGTACATTTTTTCCCTTTTTTTTTTTCAGTTCAATTGATAAACGATATTCATAAAA
TTCAGTCAAAGGAAAATATATTTCATGTGTATGGGTTTATGATGATAAGTCCAAAGGCTTGTTTC
TCAAAACATTAGCAGTGGCCACCTAAGA
Found at i:7677627 original size:9 final size:9
Alignment explanation
Indices: 7677613--7677638 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7677603 TTTAAATTCA
7677613 ATAAGCATT
1 ATAAGCATT
7677622 ATAAGCATT
1 ATAAGCATT
7677631 ATAAGCAT
1 ATAAGCAT
7677639 GATATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (9 bp):
ATAAGCATT
Found at i:7677981 original size:42 final size:43
Alignment explanation
Indices: 7677852--7678075 Score: 274
Period size: 43 Copynumber: 5.3 Consensus size: 43
7677842 TATATGTTTT
* * * ** *
7677852 TAGCGGCGTTTGTAGGAAAAGTGCCGCTAAAAGTCACGACCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * * *
7677895 TAGCGGCTTTTGTGGGATAAGCGTCGCTAAAGATCTTGAGCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGATCTA
*
7677938 TAGCGGCGTTTGT-GTAAAAGCGCCGCTAAAGGT-TCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCT-TGATCTA
7677980 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
7678023 TAGCGGCGTTTGT-GTAAAAGCGCCGCTAAAGCTCCTAATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGATCTA
7678065 TAGCGGCGTTT
1 TAGCGGCGTTT
7678076 ATTTCTAAAA
Statistics
Matches: 157, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.01
42 71 0.45
43 84 0.54
44 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:7677996 original size:85 final size:85
Alignment explanation
Indices: 7677852--7678075 Score: 306
Period size: 85 Copynumber: 2.6 Consensus size: 85
7677842 TATATGTTTT
* * * * * * *
7677852 TAGCGGCGTTTGTAGGAAAAGTGCCGCTAAAAG-TCACGACCTATAGCGGCTTTTGTGGGATAAG
1 TAGCGGCGTTTGT-GTAAAAGCGCCGCTAAAGGTTC-TGATCTATAGCGGCGTTTGTGGGAAAAG
*
7677916 CGTCGCTAAAGATCTTGAGCTA
64 CGCCGCTAAAGATCTTGAGCTA
7677938 TAGCGGCGTTTGTGTAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
1 TAGCGGCGTTTGTGTAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
* *
7678003 CCGCTAAAGGTCTTGATCTA
66 CCGCTAAAGATCTTGAGCTA
* * *
7678023 TAGCGGCGTTTGTGTAAAAGCGCCGCTAAAGCTCCTAATCTATAGCGGCGTTT
1 TAGCGGCGTTTGTGTAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTT
7678076 ATTTCTAAAA
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
85 109 0.88
86 15 0.12
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (85 bp):
TAGCGGCGTTTGTGTAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
CCGCTAAAGATCTTGAGCTA
Found at i:7681482 original size:2 final size:2
Alignment explanation
Indices: 7681470--7681503 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7681460 GTTTTGGATG
7681470 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7681504 ATGATCAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7684238 original size:161 final size:161
Alignment explanation
Indices: 7684052--7684376 Score: 623
Period size: 161 Copynumber: 2.0 Consensus size: 161
7684042 TTTATTGAAA
* * *
7684052 TTTAACCACCAATAACCCAAAAACAGGGCAACAGACAGAGAAAGAGGAAAAGAGAAACTCTCAAG
1 TTTAACCACCAATAACACAAAAACAGCGCAACAGACAGAGAAAGAGGAAAAAAGAAACTCTCAAG
7684117 CAATGGCTTTTGGCCTATATGTAAATTTATTAGTTTCAGTGTTTCGGCATTCTGGGTTTGATCTA
66 CAATGGCTTTTGGCCTATATGTAAATTTATTAGTTTCAGTGTTTCGGCATTCTGGGTTTGATCTA
7684182 CATCACCTCATGAGGTGACAAAATATCAACC
131 CATCACCTCATGAGGTGACAAAATATCAACC
7684213 TTTAACCACCAATAACACAAAAACAGCGCAACAGACAGAGAAAGAGGAAAAAAGAAACTCTCAAG
1 TTTAACCACCAATAACACAAAAACAGCGCAACAGACAGAGAAAGAGGAAAAAAGAAACTCTCAAG
7684278 CAATGGCTTTTGGCCTATATGTAAATTTATTAGTTTCAGTGTTTCGGCATTCTGGGTTTGATCTA
66 CAATGGCTTTTGGCCTATATGTAAATTTATTAGTTTCAGTGTTTCGGCATTCTGGGTTTGATCTA
7684343 CATCACCTCATGAGGTGACAAAATATCAACC
131 CATCACCTCATGAGGTGACAAAATATCAACC
7684374 TTT
1 TTT
7684377 TACAATCGAA
Statistics
Matches: 161, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
161 161 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (161 bp):
TTTAACCACCAATAACACAAAAACAGCGCAACAGACAGAGAAAGAGGAAAAAAGAAACTCTCAAG
CAATGGCTTTTGGCCTATATGTAAATTTATTAGTTTCAGTGTTTCGGCATTCTGGGTTTGATCTA
CATCACCTCATGAGGTGACAAAATATCAACC
Found at i:7684395 original size:3 final size:3
Alignment explanation
Indices: 7684387--7684412 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7684377 TACAATCGAA
7684387 GAG GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GA
7684413 AGAAGAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:7687063 original size:63 final size:63
Alignment explanation
Indices: 7686990--7687151 Score: 227
Period size: 63 Copynumber: 2.6 Consensus size: 63
7686980 ATAAGGTATA
*
7686990 CAGTGTAAGACCATGGATGAAAGACTCCATGGCATCAAAAGATAGTGCACCAAGATGGCGAAT
1 CAGTGTAAGACCATGGATGAAAGACTCCATGGCATCAAAAGATAATGCACCAAGATGGCGAAT
* ** * *
7687053 CAGTGTAAGACCATGGATGAAAGACTCCGA-GGCATTAAAAGATAATGTGCCAGGATGGTGAAT
1 CAGTGTAAGACCATGGATGAAAGACTCC-ATGGCATCAAAAGATAATGCACCAAGATGGCGAAT
* * *
7687116 CGGTGTAAAACCATGGATGAAAGACTCCATGACATC
1 CAGTGTAAGACCATGGATGAAAGACTCCATGGCATC
7687152 CATAGAGATA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
62 1 0.01
63 85 0.98
64 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (63 bp):
CAGTGTAAGACCATGGATGAAAGACTCCATGGCATCAAAAGATAATGCACCAAGATGGCGAAT
Found at i:7687246 original size:33 final size:33
Alignment explanation
Indices: 7687173--7687248 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
7687163 TCCGTTGGGA
* *
7687173 CAGTAAACACGGAATAGAGATAGTTCGTCAAGG
1 CAGTAAACATGGAATAAAGATAGTTCGTCAAGG
* *
7687206 CAATAAACATGGAATAAAGATAGTTCG-CTAGGG
1 CAGTAAACATGGAATAAAGATAGTTCGTC-AAGG
7687239 CAGTAAACAT
1 CAGTAAACAT
7687249 AAAATAGAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.03
33 36 0.97
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (33 bp):
CAGTAAACATGGAATAAAGATAGTTCGTCAAGG
Found at i:7687277 original size:33 final size:33
Alignment explanation
Indices: 7687239--7687314 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
7687229 TTCGCTAGGG
* *
7687239 CAGTAAACATAAAATAGAGGTAGTCTATC-GAGA
1 CAGTAAACACAAAATAGAGGTAATCTATCAG-GA
* *
7687272 TAGTAAATACAAAATAGAGGTAATCTATCAGGA
1 CAGTAAACACAAAATAGAGGTAATCTATCAGGA
7687305 CAGTAAACAC
1 CAGTAAACAC
7687315 GAGGTGAGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
33 35 0.97
34 1 0.03
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.21
Consensus pattern (33 bp):
CAGTAAACACAAAATAGAGGTAATCTATCAGGA
Found at i:7692546 original size:14 final size:14
Alignment explanation
Indices: 7692511--7692553 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
7692501 CTATTTCAAA
*
7692511 AAATAAATAATATTT
1 AAATAAATTA-ATTT
*
7692526 ATA-AAATTAATTT
1 AAATAAATTAATTT
7692539 AAATAAATTAATTT
1 AAATAAATTAATTT
7692553 A
1 A
7692554 CCAATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 6 0.25
14 16 0.67
15 2 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AAATAAATTAATTT
Found at i:7698541 original size:34 final size:34
Alignment explanation
Indices: 7698494--7698564 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
7698484 TTTAAGCTAA
7698494 GTTACAGTAAAGCTTCAATTCACTTGCATGGTAT
1 GTTACAGTAAAGCTTCAATTCACTTGCATGGTAT
*
7698528 GTTACAGTGAAGCTTCAATTCACTTGCATGGTAT
1 GTTACAGTAAAGCTTCAATTCACTTGCATGGTAT
7698562 GTT
1 GTT
7698565 TTTCAAGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (34 bp):
GTTACAGTAAAGCTTCAATTCACTTGCATGGTAT
Found at i:7699492 original size:29 final size:29
Alignment explanation
Indices: 7699423--7699500 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
7699413 TCATGCCCTA
7699423 TGTGCCGGTGATTATACTTATCAGGCACTT
1 TGTGCCGGTG-TTATACTTATCAGGCACTT
* * *
7699453 TGTAG-TGGTGTTATAGTTTTCAGGCACTT
1 TGT-GCCGGTGTTATACTTATCAGGCACTT
*
7699482 TGTGCCAGTGTTATA-TTAT
1 TGTGCCGGTGTTATACTTAT
7699501 TAGGTACTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
28 4 0.10
29 28 0.70
30 7 0.17
31 1 0.03
ACGTcount: A:0.19, C:0.14, G:0.24, T:0.42
Consensus pattern (29 bp):
TGTGCCGGTGTTATACTTATCAGGCACTT
Found at i:7700814 original size:68 final size:68
Alignment explanation
Indices: 7700735--7700868 Score: 191
Period size: 68 Copynumber: 2.0 Consensus size: 68
7700725 TGATTAAACT
* * *
7700735 TAATCACTTTAAT-ATTAATTAATATAATATTTATCAAGATAAATATTAAA-TTAAATTTAATAT
1 TAATCAATTTAATAATAAATTAATAAAATA-TTATCAAGATAAATATTAAACTT-AATTTAATAT
7700798 TAAGA
64 TAAGA
* *
7700803 TAATCAATTTAATAATAAATTAATAAAATATTATTAAGATAAGTATTAAACTTAATTTAATATTA
1 TAATCAATTTAATAATAAATTAATAAAATATTATCAAGATAAATATTAAACTTAATTTAATATTA
7700868 A
66 A
7700869 ACTATTAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
68 43 0.73
69 16 0.27
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (68 bp):
TAATCAATTTAATAATAAATTAATAAAATATTATCAAGATAAATATTAAACTTAATTTAATATTA
AGA
Found at i:7717671 original size:2 final size:2
Alignment explanation
Indices: 7717664--7717690 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7717654 AACATACAAT
7717664 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7717691 GAACTTTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7719824 original size:25 final size:27
Alignment explanation
Indices: 7719796--7719852 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
7719786 ATTTGGGCTA
7719796 AATTAGA-TGTATATTTC-GTTTTTTT
1 AATTAGATTGTATATTTCAGTTTTTTT
* *
7719821 AATTA-ATTTTTTATTTCAGTTTTTTT
1 AATTAGATTGTATATTTCAGTTTTTTT
7719847 AATTAG
1 AATTAG
7719853 CGAAATAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 13 0.48
26 13 0.48
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (27 bp):
AATTAGATTGTATATTTCAGTTTTTTT
Found at i:7721544 original size:49 final size:49
Alignment explanation
Indices: 7721471--7721593 Score: 158
Period size: 49 Copynumber: 2.5 Consensus size: 49
7721461 TGGCATCACC
* * *
7721471 CATAGCACCAAGCTGATTAGCAACTAACATGCCCTACTAGA-AACCAAGCA
1 CATA-CACCAATCTGGTTAGCAACTAACATGCCCTACCAGACAACCAA-CA
* *
7721521 CATACACCAATCTGGTTAGCAACTAACATGCCCTACCAGACATCCAACT
1 CATACACCAATCTGGTTAGCAACTAACATGCCCTACCAGACAACCAACA
* *
7721570 CATACGCCAATCTGGATAGCAACT
1 CATACACCAATCTGGTTAGCAACT
7721594 TGTACCACCC
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 56 0.86
50 9 0.14
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.19
Consensus pattern (49 bp):
CATACACCAATCTGGTTAGCAACTAACATGCCCTACCAGACAACCAACA
Found at i:7723863 original size:23 final size:23
Alignment explanation
Indices: 7723833--7723879 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
7723823 ATTTATTTAC
7723833 TTATTATTA-TATTAGTTAGTTTT
1 TTATTATTATTATTAGTTA-TTTT
*
7723856 TTATTATTATTATTATTTATTTT
1 TTATTATTATTATTAGTTATTTT
7723879 T
1 T
7723880 CTAAATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (23 bp):
TTATTATTATTATTAGTTATTTT
Found at i:7725073 original size:19 final size:19
Alignment explanation
Indices: 7725031--7725073 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7725021 TCATTTTTGT
7725031 AGTCTGCATTATTTTGTTA
1 AGTCTGCATTATTTTGTTA
* *
7725050 TGTCTGCTTTA-TTTGTTCA
1 AGTCTGCATTATTTTGTT-A
7725069 AGTCT
1 AGTCT
7725074 CGATATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.53
Consensus pattern (19 bp):
AGTCTGCATTATTTTGTTA
Found at i:7730371 original size:138 final size:137
Alignment explanation
Indices: 7730170--7730625 Score: 410
Period size: 138 Copynumber: 3.4 Consensus size: 137
7730160 AGTGGGATAA
* * * * **
7730170 ATTAAAGCTAAAGGTGGCAAATCTTGTTTCCCCGGCGTTGCAG-CGAAGCAGATTAAAGCTGAAG
1 ATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGCATTGCAGTGGAA-CAGATTAAAATTGAAG
* *
7730234 GCAGCGAATCTTATCTCCCTAGCGTTAAAGATGAAGACAACGAATCTTACTTCCCTGGCTTTGCA
65 GCAGCGAATCTTATCT-CCTAGCGTTAAAGCTGAAGACAGCGAATCTTACTTCCCTGGCTTTGCA
* *
7730299 ATGAAACAG
129 GTGGAACAG
* *
7730308 ATTAAAGCTAAAGGTAGCAAATATTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAATTGAAGT
1 ATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGCATTGCAGTGGAACAGATTAAAATTGAAG-
* * * * * * * *
7730373 GGAGCG-----GA--T--TA-----AAA-CTGAAGGCAGCAAATCCTA-TCTCCTTGGCGTTACA
65 GCAGCGAATCTTATCTCCTAGCGTTAAAGCTGAAGACAGCGAATCTTACT-TCCCTGGCTTTGCA
7730422 GTGGAACAG
129 GTGGAACAG
* * * * * *
7730431 ATTAAAGCTAAAGTTAGCGAATCTTGTTTCCCTGGCGTTGCAGCGGAGCAGATT-AAATCTAAAG
1 ATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGCATTGCAGTGGAACAGATTAAAAT-TGAAG
* *
7730495 GCAGCAAATCTTATCTCTCTAGCGTTAAAGCTGAAGACAGTGAATCTTA-TTGCCCTGGCTTTGC
65 GCAGCGAATCTTATCTC-CTAGCGTTAAAGCTGAAGACAGCGAATCTTACTT-CCCTGGCTTTGC
*
7730559 AGTGGAACAA
128 AGTGGAACAG
** * * *
7730569 ATTAAAGCTAAAGGTAGTGAATCTTATTTCCCTGGCATTGCAATGGAATAGATTAAA
1 ATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGCATTGCAGTGGAACAGATTAAA
7730626 GCTGAAGTGA
Statistics
Matches: 249, Mismatches: 47, Indels: 43
0.73 0.14 0.13
Matches are distributed among these distances:
122 9 0.04
123 83 0.33
124 3 0.01
127 1 0.00
129 3 0.01
132 3 0.01
134 1 0.00
137 4 0.02
138 132 0.53
139 10 0.04
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (137 bp):
ATTAAAGCTAAAGGTAGCAAATCTTGTTTCCCTGGCATTGCAGTGGAACAGATTAAAATTGAAGG
CAGCGAATCTTATCTCCTAGCGTTAAAGCTGAAGACAGCGAATCTTACTTCCCTGGCTTTGCAGT
GGAACAG
Found at i:7730483 original size:261 final size:260
Alignment explanation
Indices: 7730014--7730734 Score: 1019
Period size: 261 Copynumber: 2.8 Consensus size: 260
7730004 TGAAGGCAGT
* *
7730014 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCT
1 GAATCTTA-TTCCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCC
* * *** *
7730079 TGGCTTTGCAGTGGAATAGATTAAAGTTGAAGTGGGGCGGATTAAAGCTAAAGGCAATGAATCCC
65 TGGCATTGCAGTGGAATAGATTAAAGTTGAAGTGGAGCGGATTAAAGCTAAAGGCAGCAAATCCT
* * * * * * *
7730144 ATCTCCTTAGCATTACAGTGGGATAAATTAAAGCTAAAGGTGGCAAATCTTGTTTCCCCGGCGTT
130 ATCTCCTTGGCGTTACAGTGGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTT
* *
7730209 GCAGCGAAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTAGCGTTAAAGATGAAGACAA
195 GCAGCGAAGCAGATTAAAGCTAAAGGCAGCAAATCTTATCTCCCTAGCGTTAAAGATGAAGACAA
7730274 C
260 C
* * * *
7730275 GAATCTTACTTCCCTGGCTTTGCAATGAAACAGATTAAAGCTAAAGGTAGCAAATATTGTTTCCC
1 GAATCTTA-TTCCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCC
* * *
7730340 TGGCATTGCAGTGGAATAGATTAAAATTGAAGTGGAGCGGATTAAAACTGAAGGCAGCAAATCCT
65 TGGCATTGCAGTGGAATAGATTAAAGTTGAAGTGGAGCGGATTAAAGCTAAAGGCAGCAAATCCT
* *
7730405 ATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGTTAGCGAATCTTGTTTCCCTGGCGTT
130 ATCTCCTTGGCGTTACAGTGGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTT
* * * * *
7730470 GCAGCGGAGCAGATTAAATCTAAAGGCAGCAAATCTTATCTCTCTAGCGTTAAAGCTGAAGACAG
195 GCAGCGAAGCAGATTAAAGCTAAAGGCAGCAAATCTTATCTCCCTAGCGTTAAAGATGAAGACAA
*
7730535 T
260 C
* * *
7730536 GAATCTTATTGCCCTGGCTTTGCAGTGGAACAAATTAAAGCTAAAGGTAGTGAATCTTATTTCCC
1 GAATCTTATT-CCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCC
* * * * *
7730601 TGGCATTGCAATGGAATAGATTAAAGCTGAAGTGAAGCGGATTAATGCTAAAGGTAGCAAATCCT
65 TGGCATTGCAGTGGAATAGATTAAAGTTGAAGTGGAGCGGATTAAAGCTAAAGGCAGCAAATCCT
* * * *
7730666 ATCTCATTGGCGTTATAGTGGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCTCTGGCATT
130 ATCTCCTTGGCGTTACAGTGGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTT
7730731 GCAG
195 GCAG
7730735 TGAGCAAATT
Statistics
Matches: 405, Mismatches: 54, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
260 2 0.00
261 403 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (260 bp):
GAATCTTATTCCCTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCT
GGCATTGCAGTGGAATAGATTAAAGTTGAAGTGGAGCGGATTAAAGCTAAAGGCAGCAAATCCTA
TCTCCTTGGCGTTACAGTGGAATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTG
CAGCGAAGCAGATTAAAGCTAAAGGCAGCAAATCTTATCTCCCTAGCGTTAAAGATGAAGACAAC
Found at i:7730484 original size:123 final size:123
Alignment explanation
Indices: 7730303--7730736 Score: 388
Period size: 123 Copynumber: 3.4 Consensus size: 123
7730293 TTTGCAATGA
* *
7730303 AACAGATTAAAGCTAAAGGTAGCAAATATTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAATT
1 AACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAATT
7730368 GAAGTGGAGCGGATTAAAACTGAAGGCAGCAAATCCTATCTCCTTGGCGTTACAGTGG
66 GAAGTGGAGCGGATTAAAACTGAAGGCAGCAAATCCTATCTCCTTGGCGTTACAGTGG
* * * **
7730426 AACAGATTAAAGCTAAAGTTAGCGAATCTTGTTTCCCTGGCGTTGCAGCGGAGCAGATT-AAATC
1 AACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAAT-
* * ** * ** * *
7730490 TAAAG-GCAGCAAATCTTATCTCTCTAGCGTTAAAGCTGAAGACAGTGAATCTTAT-TGCCCTGG
65 TGAAGTG--G---AGCGGA----T-TA-----AAA-CTGAAGGCAGCAAATCCTATCT-CCTTGG
* *
7730553 CTTTGCAGTGG
113 CGTTACAGTGG
* * * * **
7730564 AACAAATTAAAGCTAAAGGTAGTGAATCTTATTTCCCTGGCATTGCAATGGAATAGATTAAAGCT
1 AACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAATT
* ** * * * *
7730629 GAAGTGAAGCGGATTAATGCTAAAGGTAGCAAATCCTATCTCATTGGCGTTATAGTGG
66 GAAGTGGAGCGGATTAAAACTGAAGGCAGCAAATCCTATCTCCTTGGCGTTACAGTGG
* *
7730687 AATAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCTCTGGCATTGCAGTG
1 AACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGTG
7730737 AGCAAATTAA
Statistics
Matches: 237, Mismatches: 53, Indels: 42
0.71 0.16 0.13
Matches are distributed among these distances:
122 5 0.02
123 126 0.53
124 3 0.01
127 3 0.01
129 2 0.01
130 1 0.00
131 1 0.00
132 2 0.01
134 3 0.01
137 4 0.02
138 84 0.35
139 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (123 bp):
AACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAATT
GAAGTGGAGCGGATTAAAACTGAAGGCAGCAAATCCTATCTCCTTGGCGTTACAGTGG
Found at i:7730505 original size:51 final size:51
Alignment explanation
Indices: 7730373--7730521 Score: 154
Period size: 51 Copynumber: 2.9 Consensus size: 51
7730363 AAATTGAAGT
* * * * *
7730373 GGAGCGGATTAAAACTGAAGGCAGCAAATCCTATCTCCTTGGCGTTACAGT
1 GGAGCAGATTAAAACTAAAGGCAGCAAATCTTATCTCCCTGGCGTTACAGC
* * ** * * * *
7730424 GGAACAGATTAAAGCTAAAGTTAGCGAATCTTGTTTCCCTGGCGTTGCAGC
1 GGAGCAGATTAAAACTAAAGGCAGCAAATCTTATCTCCCTGGCGTTACAGC
* * *
7730475 GGAGCAGATTAAATCTAAAGGCAGCAAATCTTATCTCTCTAGCGTTA
1 GGAGCAGATTAAAACTAAAGGCAGCAAATCTTATCTCCCTGGCGTTA
7730522 AAGCTGAAGA
Statistics
Matches: 75, Mismatches: 23, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
51 75 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (51 bp):
GGAGCAGATTAAAACTAAAGGCAGCAAATCTTATCTCCCTGGCGTTACAGC
Found at i:7730588 original size:51 final size:51
Alignment explanation
Indices: 7730519--7730628 Score: 148
Period size: 51 Copynumber: 2.2 Consensus size: 51
7730509 CTCTCTAGCG
* * *
7730519 TTAAAGCTGAAGACAGTGAATCTTATTGCCCTGGCTTTGCAGTGGAACAAA
1 TTAAAGCTAAAGACAGTGAATCTTATTGCCCTGGCATTGCAATGGAACAAA
** * * *
7730570 TTAAAGCTAAAGGTAGTGAATCTTATTTCCCTGGCATTGCAATGGAATAGA
1 TTAAAGCTAAAGACAGTGAATCTTATTGCCCTGGCATTGCAATGGAACAAA
7730621 TTAAAGCT
1 TTAAAGCT
7730629 GAAGTGAAGC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (51 bp):
TTAAAGCTAAAGACAGTGAATCTTATTGCCCTGGCATTGCAATGGAACAAA
Found at i:7730820 original size:44 final size:43
Alignment explanation
Indices: 7730750--7731101 Score: 226
Period size: 44 Copynumber: 7.8 Consensus size: 43
7730740 AAATTAAGAA
* * *
7730750 TGAAGATAACAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAAGT
1 TGAAGAT-ACTAATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGT
* * *
7730795 TTAAGATACTAATCTTATCTCCCTGAGGTTGTAGTGGAGCAGAT
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-T
* * * *
7730839 TGAAGCTATTAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGAT
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-T
* * * * *
7730883 T-AAAATGA-TAAATCCTATAC-CTCTGAAGTTGCAGTAGG-TCGGAT
1 TGAAGAT-ACT-AATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAG-T
* ** * *
7730927 TAAATCTACTATAACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGAC
1 TGAAGATAC--T---AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAG-T
* * * *
7730977 TGAAGATAACCAACCTTATCTCCCTAAAGTTACAGTGGAGCAGGT
1 TGAAGAT-ACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GT
* * * *
7731022 TGAAGATACCAATCTTATCTCTCTGAAGTTACAGTGGAGTAGAT
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-T
* * *
7731066 TGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTG
1 TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTG
7731102 AAGCGGATTA
Statistics
Matches: 245, Mismatches: 45, Indels: 35
0.75 0.14 0.11
Matches are distributed among these distances:
43 7 0.03
44 158 0.64
45 44 0.18
46 3 0.01
47 1 0.00
49 5 0.02
50 25 0.10
51 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (43 bp):
TGAAGATACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGT
Found at i:7731082 original size:183 final size:182
Alignment explanation
Indices: 7730755--7731113 Score: 411
Period size: 183 Copynumber: 2.0 Consensus size: 182
7730745 AAGAATGAAG
* * * * * * *
7730755 ATAACAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAAGTTTAAGATACTAATCTTATCTCCCTG
1 ATAACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAAGCTGAAGATACCAACCTTATCTCCCTA
* ** * ** **
7730820 AGGTTGTAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTA
66 AAGTTACAGTGGAGCAGATTGAAGATACCAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTA
* *
7730885 AAATGATAAATCCTATAC-CTCTGAAGTTGCAGT-AGGTCGGATTAAATCTACT
131 AAATGATAAATCCTAT-CTCCCTGAAGTTGCAGTGAAG-CGGATTAAATCTACT
**
7730937 ATAACAAGTCTTATCTCCCTGAAGTTGCAATGGAGC-AGACTGAAGATAACCAACCTTATCTCCC
1 ATAACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAAG-CTGAAGAT-ACCAACCTTATCTCCC
* * * *
7731001 TAAAGTTACAGTGGAGCAGGTTGAAGATACCAATCTTATCTCTCTGAAGTTACAGTGGAGTAGAT
64 TAAAGTTACAGTGGAGCAGATTGAAGATACCAATCCTATCTCCCTGAAGTTACAGTGGAGCAGAT
** *
7731066 TGAAGCT-ATTAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAA
129 T-AAAATGATAAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAA
7731114 ATGGTGAATC
Statistics
Matches: 146, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
181 2 0.01
182 39 0.27
183 100 0.68
184 5 0.03
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (182 bp):
ATAACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAAGCTGAAGATACCAACCTTATCTCCCTA
AAGTTACAGTGGAGCAGATTGAAGATACCAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTA
AAATGATAAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAATCTACT
Found at i:7731145 original size:227 final size:227
Alignment explanation
Indices: 7730750--7731204 Score: 703
Period size: 227 Copynumber: 2.0 Consensus size: 227
7730740 AAATTAAGAA
* * * * *
7730750 TGAAGATAACAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAAGTTTAAGATACTAATCTTATCT
1 TGAAGATAACAAACCTTATCTCCCTAAAGTTACAGTGGAGCAAGTTGAAGATACCAATCTTATCT
* ** * *
7730815 CCCTGAGGTTGTAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGTAGTGGAGCA
66 CCCTGAAGTTACAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTGAAGCA
* * * *
7730880 GATTAAAATGATAAATCCTATACCTCTGAAGTTGCAGTAGGTCGGATTAAATCTACTATAACAAG
131 GATTAAAATGATAAATCCTATACCTCTAAAATTGCAGTAGGTCGGATTAAATCTACCATAAAAAG
7730945 TCTTATCTCCCTGAAGTTGCAATGGAGCAGAC
196 TCTTATCTCCCTGAAGTTGCAATGGAGCAGAC
* *
7730977 TGAAGATAACCAACCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGATACCAATCTTATCT
1 TGAAGATAACAAACCTTATCTCCCTAAAGTTACAGTGGAGCAAGTTGAAGATACCAATCTTATCT
* * *
7731042 CTCTGAAGTTACAGTGGAGTAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTGAAGCG
66 CCCTGAAGTTACAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTGAAGCA
* *
7731107 GATTAAAATGGTGAATCCTATACCTCTAAAATTGCAGTAGGTCGGATTAAATCTACCATAAAAAG
131 GATTAAAATGATAAATCCTATACCTCTAAAATTGCAGTAGGTCGGATTAAATCTACCATAAAAAG
* *
7731172 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGAC
196 TCTTATCTCCCTGAAGTTGCAATGGAGCAGAC
7731204 T
1 T
7731205 AAAACCACAA
Statistics
Matches: 205, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
227 205 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (227 bp):
TGAAGATAACAAACCTTATCTCCCTAAAGTTACAGTGGAGCAAGTTGAAGATACCAATCTTATCT
CCCTGAAGTTACAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAAGTTGCAGTGAAGCA
GATTAAAATGATAAATCCTATACCTCTAAAATTGCAGTAGGTCGGATTAAATCTACCATAAAAAG
TCTTATCTCCCTGAAGTTGCAATGGAGCAGAC
Found at i:7732719 original size:23 final size:21
Alignment explanation
Indices: 7732660--7732720 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
7732650 TCACTTTTCC
7732660 TTTTATTTATTTACTTATTATTA
1 TTTTATTTATTT--TTATTATTA
* *
7732683 TATTAATTAGTTTTGTATTATTA
1 TTTTATTTA-TTTT-TATTATTA
7732706 TTTTTATTTATTTTT
1 -TTTTATTTATTTTT
7732721 CTAAATATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
22 2 0.06
23 19 0.61
24 10 0.32
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTTATTTATTTTTATTATTA
Found at i:7732806 original size:3 final size:3
Alignment explanation
Indices: 7732798--7732858 Score: 77
Period size: 3 Copynumber: 20.3 Consensus size: 3
7732788 TAAACCTTAG
* * * *
7732798 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ACT ATT ATT ATC ATT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
7732846 ATC ATT ATT ATT A
1 ATT ATT ATT ATT A
7732859 ATGTTATTCT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:7734821 original size:10 final size:10
Alignment explanation
Indices: 7734806--7734833 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
7734796 TTCTTTAGTC
7734806 TTTAATTTAT
1 TTTAATTTAT
7734816 TTTAATTTAT
1 TTTAATTTAT
7734826 TTTAATTT
1 TTTAATTT
7734834 TAAAATTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTAATTTAT
Found at i:7735284 original size:20 final size:20
Alignment explanation
Indices: 7735268--7735306 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7735258 ATACATGCGT
*
7735268 ATGTAAATGGTTACATGAAC
1 ATGTAAATGGTTACATGCAC
*
7735288 ATGTAGATGGTTACATGCA
1 ATGTAAATGGTTACATGCA
7735307 ACAACTTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (20 bp):
ATGTAAATGGTTACATGCAC
Found at i:7736866 original size:24 final size:24
Alignment explanation
Indices: 7736839--7736899 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
7736829 ATCTTCTTTG
*
7736839 TCTTCATCTCCACCCTCGTAC-TCA
1 TCTTCATCTCCACCATCGT-CTTCA
* * *
7736863 TCTTTATCTCTACTATCGTCTTCA
1 TCTTCATCTCCACCATCGTCTTCA
*
7736887 TCTTCATTTCCAC
1 TCTTCATCTCCAC
7736900 ATTTAGCTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.16, C:0.38, G:0.03, T:0.43
Consensus pattern (24 bp):
TCTTCATCTCCACCATCGTCTTCA
Found at i:7737135 original size:12 final size:12
Alignment explanation
Indices: 7737118--7737146 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7737108 TAAATACTAG
7737118 CATTGATGACAA
1 CATTGATGACAA
7737130 CATTGATGACAA
1 CATTGATGACAA
7737142 CATTG
1 CATTG
7737147 GTGTTGCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (12 bp):
CATTGATGACAA
Found at i:7739230 original size:14 final size:14
Alignment explanation
Indices: 7739211--7739253 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
7739201 TGAAAATTTA
7739211 ATAAAAATAATAAT
1 ATAAAAATAATAAT
7739225 ATAAAAATAATTAA-
1 ATAAAAATAA-TAAT
*
7739239 ATAAAACT-ATAAT
1 ATAAAAATAATAAT
7739252 AT
1 AT
7739254 TTTTAAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.12
13 3 0.12
14 17 0.65
15 3 0.12
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAAAAATAATAAT
Found at i:7741563 original size:29 final size:31
Alignment explanation
Indices: 7741512--7741573 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 31
7741502 AGTCTATATC
* *
7741512 TTTATAATTTTTAAAGGATTAAATTG-AATT
1 TTTATAATTTTTAAAGGACTAAAATGTAATT
* *
7741542 TTTATAA-TTTTAAGGGGCTAAAATGTAATT
1 TTTATAATTTTTAAAGGACTAAAATGTAATT
7741572 TT
1 TT
7741574 ACTTTTACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (31 bp):
TTTATAATTTTTAAAGGACTAAAATGTAATT
Found at i:7744374 original size:17 final size:18
Alignment explanation
Indices: 7744352--7744385 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7744342 ATAATTAATA
7744352 TATTTTA-ATTTTAAAAT
1 TATTTTATATTTTAAAAT
*
7744369 TATTTTATTTTTTAAAA
1 TATTTTATATTTTAAAA
7744386 CGAAAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTATATTTTAAAAT
Found at i:7757807 original size:6 final size:6
Alignment explanation
Indices: 7757796--7757846 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
7757786 CACAAATCTT
* **
7757796 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CTCTTC CTTTTC CCCTTC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC
7757844 CCC
1 CCC
7757847 CATCCTTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (6 bp):
CCCTTC
Found at i:7760492 original size:34 final size:35
Alignment explanation
Indices: 7760438--7760504 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7760428 CAAACACCAG
*
7760438 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
7760473 AAAACATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
7760505 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Done.