Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 26 of 75
Found at i:7775813 original size:20 final size:19
Alignment explanation
Indices: 7775788--7775825 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7775778 TTTACTAAAT
7775788 TATATACTATTTATATTATA
1 TATATACTATTTAT-TTATA
*
7775808 TATATAGTATTTATTTAT
1 TATATACTATTTATTTAT
7775826 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (19 bp):
TATATACTATTTATTTATA
Found at i:7779190 original size:41 final size:41
Alignment explanation
Indices: 7779123--7779309 Score: 184
Period size: 41 Copynumber: 4.6 Consensus size: 41
7779113 GATACCACGT
* *
7779123 CGGCATAAAGCCTG-TGAGGTATAAAGCTTATTAAAATACAC
1 CGGCATAAAGCCTGCT-AGGCATAAAGCTTATTATAATACAC
* * * *
7779164 CGGCATAAAGCCTTCTAGGCACAAAGC-TAGATATGATACAC
1 CGGCATAAAGCCTGCTAGGCATAAAGCTTA-TTATAATACAC
** * **
7779205 CGGCACGAAGCCTGCTAGGCATAAAGCCTGA-TATGGTACAC
1 CGGCATAAAGCCTGCTAGGCATAAAG-CTTATTATAATACAC
* * *
7779246 CGGCATGAAGCCTGCTAGGCATAAAGCTTGTTATAATTCA-
1 CGGCATAAAGCCTGCTAGGCATAAAGCTTATTATAATACAC
7779286 CGAGCATAAAGCCTGCTAGGCATA
1 CG-GCATAAAGCCTGCTAGGCATA
7779310 GAGCCCGAAT
Statistics
Matches: 121, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
40 6 0.05
41 112 0.93
42 2 0.02
43 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (41 bp):
CGGCATAAAGCCTGCTAGGCATAAAGCTTATTATAATACAC
Found at i:7787666 original size:16 final size:16
Alignment explanation
Indices: 7787630--7787662 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7787620 TGCTATATAT
7787630 TGATTAAATGTAATTA
1 TGATTAAATGTAATTA
7787646 TGATTAAA-GTAATTA
1 TGATTAAATGTAATTA
7787661 TG
1 TG
7787663 GATTGGGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (16 bp):
TGATTAAATGTAATTA
Found at i:7787922 original size:20 final size:20
Alignment explanation
Indices: 7787897--7787941 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
7787887 CCGACGAGGC
7787897 ATTGGATTCCAAACTGGTAT
1 ATTGGATTCCAAACTGGTAT
7787917 ATTGGATTCCAAACTGGTAT
1 ATTGGATTCCAAACTGGTAT
*
7787937 GTTGG
1 ATTGG
7787942 TTGGATCCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (20 bp):
ATTGGATTCCAAACTGGTAT
Found at i:7791103 original size:18 final size:18
Alignment explanation
Indices: 7791080--7791114 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7791070 GTCATTAGGA
7791080 GGCTTTAAATGCTTTTGT
1 GGCTTTAAATGCTTTTGT
* *
7791098 GGCTTTTACTGCTTTTG
1 GGCTTTAAATGCTTTTG
7791115 AAATTAGTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.14, G:0.23, T:0.51
Consensus pattern (18 bp):
GGCTTTAAATGCTTTTGT
Found at i:7791915 original size:119 final size:117
Alignment explanation
Indices: 7791790--7792089 Score: 321
Period size: 119 Copynumber: 2.5 Consensus size: 117
7791780 CTAAGAGAGG
* *
7791790 CAAGACCTCTCGCATTAGCTTTCAAAGGTGTAAGGGGAATGAGACCTCTCACCTTAACCAATTCC
1 CAAGACCTCTCGCATTAGCCTTCAAAGGTGTAAGGGG-ATGAGACCTCTCACCTTAGCCAATTCC
* * * ** * *
7791855 ATAAAAAGGATAAGACCTCATTCCTTGGAATTTGGTTGGTTCTACCAAGAGGGA
65 ATAAAAAGGATAACACCTCATGCCTTGGAATTTGGCTAATTCTACCAACA-AGA
** ** ** * * *
7791909 TGAGACCTCTTTCATTAGCCTTCAGGGGTGTGAGGGGGACGAGACCTCTTACCTTAGCCAATTCC
1 CAAGACCTCTCGCATTAGCCTTCAAAGGTGT-AAGGGGATGAGACCTCTCACCTTAGCCAATTCC
* * * *
7791974 ATAAGAGGGGTAACACCTCATGCCTTGGCATTTGGCTAATTCTACCAACAAGA
65 ATAAAAAGGATAACACCTCATGCCTTGGAATTTGGCTAATTCTACCAACAAGA
* * * **
7792027 CAAGACCTCTCGCCTTGGCCTTCAAATGCATAAGAGGGATGAGACCTCTCACCTTAGCCAATT
1 CAAGACCTCTCGCATTAGCCTTCAAAGGTGTAAG-GGGATGAGACCTCTCACCTTAGCCAATT
7792090 GCTCAAAAGG
Statistics
Matches: 143, Mismatches: 36, Indels: 5
0.78 0.20 0.03
Matches are distributed among these distances:
117 2 0.01
118 48 0.34
119 88 0.62
120 5 0.03
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (117 bp):
CAAGACCTCTCGCATTAGCCTTCAAAGGTGTAAGGGGATGAGACCTCTCACCTTAGCCAATTCCA
TAAAAAGGATAACACCTCATGCCTTGGAATTTGGCTAATTCTACCAACAAGA
Found at i:7794043 original size:170 final size:171
Alignment explanation
Indices: 7793752--7794069 Score: 417
Period size: 170 Copynumber: 1.9 Consensus size: 171
7793742 GCAGTTTAAT
* * *
7793752 CTGCAAACAATGTGGTTCGATCACGAACCGAGTGGCAGTTTATTTAATCAGCAAATTTGTTGTAC
1 CTGCAAACAATGTGGTTCGATCACGAACCAAATGGCAGTTTATTTAATCAGCAAATATGTTGTAC
* * * * *
7793817 ACTCACAACAAGTGGCAGTAAGTGCAAATATGTAGTTCGATCATGAACCAAGTGGCAATTTGTTT
66 ACTCACAACAAATGGCAGTAACTGCAAATATGTAGTTCAATCACGAACCAAGTGGCAATTTCTTT
*
7793882 AATCTGAAAATATGTTGTGTACCCACAACAAGTGACAGTGA
131 AATCTCAAAATATGTTGTGTACCCACAACAAGTGACAGTGA
* * * * *
7793923 CTGCAAA-TATGTGGTTCGATCATGAACCAAATGGCAGTTTGTTTAATCTA-CAAATATGTTTTG
1 CTGCAAACAATGTGGTTCGATCACGAACCAAATGGCAGTTTATTTAATC-AGCAAATATGTTGTA
* * * *
7793986 CAACT-ATAACAAATGGTAGTAACTGCAAATATGTGGTTCAATCACGAACCAAGTGGCAGTTTCT
65 C-ACTCACAACAAATGGCAGTAACTGCAAATATGTAGTTCAATCACGAACCAAGTGGCAATTTCT
* *
7794050 TTAATTTCCAAATATGTTGT
129 TTAATCTCAAAATATGTTGT
7794070 ACACCTACAA
Statistics
Matches: 125, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
170 114 0.91
171 11 0.09
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (171 bp):
CTGCAAACAATGTGGTTCGATCACGAACCAAATGGCAGTTTATTTAATCAGCAAATATGTTGTAC
ACTCACAACAAATGGCAGTAACTGCAAATATGTAGTTCAATCACGAACCAAGTGGCAATTTCTTT
AATCTCAAAATATGTTGTGTACCCACAACAAGTGACAGTGA
Found at i:7794108 original size:85 final size:83
Alignment explanation
Indices: 7793738--7794089 Score: 373
Period size: 85 Copynumber: 4.1 Consensus size: 83
7793728 AAAGAGGAAG
* * * *
7793738 AGTGGCAGTTTAATCTGCAAACAATGTGGTTCGATCACGAACCGAGTGGCAGTTTATTTAATCAG
1 AGTGGCAG--TAA-CTGCAAA-TATGTGGTTCGATCACGAACCAAGTGGCAGTTTGTTTAATCTG
*
7793803 CAAATTTGTTGTACACTCACAACA
62 CAAATATGTTGTACA--CACAACA
* * * * *
7793827 AGTGGCAGTAAGTGCAAATATGTAGTTCGATCATGAACCAAGTGGCAATTTGTTTAATCTGAAAA
1 AGTGGCAGTAACTGCAAATATGTGGTTCGATCACGAACCAAGTGGCAGTTTGTTTAATCTGCAAA
*
7793892 TATGTTGTGTACCCACAACA
66 TATG-T-TGTACACACAACA
* * * * *
7793912 AGTGACAGTGACTGCAAATATGTGGTTCGATCATGAACCAAATGGCAGTTTGTTTAATCTACAAA
1 AGTGGCAGTAACTGCAAATATGTGGTTCGATCACGAACCAAGTGGCAGTTTGTTTAATCTGCAAA
* * *
7793977 TATGTTTTGCAACTATAACA
66 TATGTTGTAC-AC-ACAACA
* * * * * *
7793997 AATGGTAGTAACTGCAAATATGTGGTTCAATCACGAACCAAGTGGCAGTTTCTTTAATTTCCAAA
1 AGTGGCAGTAACTGCAAATATGTGGTTCGATCACGAACCAAGTGGCAGTTTGTTTAATCTGCAAA
*
7794062 TATGTTGTACAC-CTACA
66 TATGTTGTACACACAACA
7794079 AGTGGCAGTAA
1 AGTGGCAGTAA
7794090 TTGTAAATTA
Statistics
Matches: 220, Mismatches: 39, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
82 12 0.05
83 3 0.01
84 4 0.02
85 178 0.81
86 7 0.03
87 8 0.04
89 8 0.04
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (83 bp):
AGTGGCAGTAACTGCAAATATGTGGTTCGATCACGAACCAAGTGGCAGTTTGTTTAATCTGCAAA
TATGTTGTACACACAACA
Found at i:7794962 original size:16 final size:16
Alignment explanation
Indices: 7794918--7794991 Score: 55
Period size: 16 Copynumber: 4.6 Consensus size: 16
7794908 TTAAAACATT
* *
7794918 TTTCTTTCTTTTCTCC
1 TTTCTTTTTTTTTTCC
*
7794934 TTTAC-GTTTTTTTTCC
1 TTT-CTTTTTTTTTTCC
7794950 TTTCTTTTTTTTTT-C
1 TTTCTTTTTTTTTTCC
*
7794965 TGTTCCTTTTTCTTTTTAC
1 T-TT-CTTTTT-TTTTTCC
7794984 -TTCTTTTT
1 TTTCTTTTT
7794992 CTTCTCTTTC
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
15 3 0.06
16 30 0.62
17 9 0.19
18 5 0.10
19 1 0.02
ACGTcount: A:0.03, C:0.20, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTCTTTTTTTTTTCC
Found at i:7794973 original size:17 final size:15
Alignment explanation
Indices: 7794940--7795003 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
7794930 CTCCTTTACG
*
7794940 TTTTTTTTCCTTTCT
1 TTTTTTTTTCTTTCT
7794955 TTTTTTTTTCTGTTCCT
1 TTTTTTTTTCT-TT-CT
7794972 TTTTCTTTTTAC-TTCT
1 TTTT-TTTTT-CTTTCT
* *
7794988 TTTTCTTCTCTTTCT
1 TTTTTTTTTCTTTCT
7795003 T
1 T
7795004 GATCTCTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
14 1 0.02
15 18 0.44
16 8 0.20
17 8 0.20
18 5 0.12
19 1 0.02
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTCTTTCT
Found at i:7800289 original size:41 final size:41
Alignment explanation
Indices: 7800195--7800329 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
7800185 TAGGGGAACG
* * * * *
7800195 TATGTGCTATTCAGGGGTACC-AGAGTATAAACAGGGGTAC-
1 TATGTGCAATTCAAGGGTACCGA-AGTACAAACAAGGGCACA
* * *
7800235 TATCTGTAATTCAAGGGTACCGAAGTACAACCAAGGGCACA
1 TATGTGCAATTCAAGGGTACCGAAGTACAAACAAGGGCACA
* * *
7800276 TATGTGCAATTCAAGGTTACCGAAGTACAAACAGGGGCTCA
1 TATGTGCAATTCAAGGGTACCGAAGTACAAACAAGGGCACA
7800317 TATGTGCAATTCA
1 TATGTGCAATTCA
7800330 GAGTATAATT
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
40 30 0.38
41 49 0.62
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (41 bp):
TATGTGCAATTCAAGGGTACCGAAGTACAAACAAGGGCACA
Found at i:7802340 original size:30 final size:29
Alignment explanation
Indices: 7802278--7802345 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
7802268 TTAACCCATA
* *
7802278 AATTGGTACCTAAACTATACCATTTTTTC
1 AATTGATACCTAAACTATACCATTTTTAC
**
7802307 AATTTGATACCTAAAC-ATATTATTTTTCAC
1 AA-TTGATACCTAAACTATACCATTTTT-AC
7802337 AATTGATAC
1 AATTGATAC
7802346 TTAAGCTACG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 18 0.55
30 15 0.45
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (29 bp):
AATTGATACCTAAACTATACCATTTTTAC
Found at i:7802342 original size:29 final size:30
Alignment explanation
Indices: 7802277--7802345 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
7802267 ATTAACCCAT
*
7802277 AAATTGGTACCTAAACTATACCATTTTTTC
1 AAATTGATACCTAAACTATACCATTTTTTC
* **
7802307 AATTTGATACCTAAAC-ATATTA-TTTTTC
1 AAATTGATACCTAAACTATACCATTTTTTC
7802335 ACAATTGATAC
1 A-AATTGATAC
7802346 TTAAGCTACG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
28 7 0.21
29 12 0.36
30 14 0.42
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.41
Consensus pattern (30 bp):
AAATTGATACCTAAACTATACCATTTTTTC
Found at i:7802515 original size:4 final size:4
Alignment explanation
Indices: 7802506--7802564 Score: 109
Period size: 4 Copynumber: 14.8 Consensus size: 4
7802496 AAGTCCTTAT
*
7802506 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATGG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
7802554 ATAG ATAG ATA
1 ATAG ATAG ATA
7802565 TTTATGTGCT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:7814676 original size:64 final size:64
Alignment explanation
Indices: 7814603--7814732 Score: 224
Period size: 64 Copynumber: 2.0 Consensus size: 64
7814593 TGATTCTTTT
7814603 TACCTCTTTATTTTTTCCGCACTTAAAGGAACCAAGGTTAAAGTAGCTTATGTACTATTTATGG
1 TACCTCTTTATTTTTTCCGCACTTAAAGGAACCAAGGTTAAAGTAGCTTATGTACTATTTATGG
* * * *
7814667 TACCTCTTTATTTTTTCTGCACTTAAATGAACCAAGGTTAAAGTAGCTTATGTATTATTTGTGG
1 TACCTCTTTATTTTTTCCGCACTTAAAGGAACCAAGGTTAAAGTAGCTTATGTACTATTTATGG
7814731 TA
1 TA
7814733 AAATATAACC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (64 bp):
TACCTCTTTATTTTTTCCGCACTTAAAGGAACCAAGGTTAAAGTAGCTTATGTACTATTTATGG
Found at i:7820293 original size:23 final size:23
Alignment explanation
Indices: 7820267--7820333 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
7820257 ACACGAGTAT
7820267 GTAGCCGAAGCTACCACTGATAC
1 GTAGCCGAAGCTACCACTGATAC
* * * *
7820290 GTAGCCGTAGCTACCACTAAAAT
1 GTAGCCGAAGCTACCACTGATAC
*
7820313 GTAGCCGAAGCTACCATTGAT
1 GTAGCCGAAGCTACCACTGAT
7820334 CAATAACATT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (23 bp):
GTAGCCGAAGCTACCACTGATAC
Found at i:7827536 original size:128 final size:129
Alignment explanation
Indices: 7827303--7827551 Score: 329
Period size: 128 Copynumber: 1.9 Consensus size: 129
7827293 TTAAAGTGTT
* *
7827303 CTTACCCACTAAAACCCTTTAACAGCATGGGTTCGAAGCCCACCAAGGCCAAAATGATAAAACAT
1 CTTACCCACTAAAACCCTTTAACAGCATGGCTTCGAACCCCACCAAGGCCAAAATGATAAAACAT
* * **** * * *
7827368 TTTCTTGATGGACCTAGGTGTTCTCGTCGAAACTCAGTGAA-CTCGTTGGGCTCTCCTTGAGTA
66 TTCCTTGATAGACCTAGACACTCTCGCCAAAACTCAGTGAACCCCGTTGGGCTCTCCTTGAGTA
* ** *
7827431 CTTACCCACTAAGACCCTTTAAGGGCATGGCTTCGAACCCCACCAAGGCCAAAATGATAAAATAT
1 CTTACCCACTAAAACCCTTTAACAGCATGGCTTCGAACCCCACCAAGGCCAAAATGATAAAACAT
* * *
7827496 TTCCTTGGTAGACCTAGACACTCTCGCCAAAACTCTGTGAACCCCTTTGGGCTCTC
66 TTCCTTGATAGACCTAGACACTCTCGCCAAAACTCAGTGAACCCCGTTGGGCTCTC
7827552 TTCAAAGTAG
Statistics
Matches: 102, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
128 90 0.88
129 12 0.12
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (129 bp):
CTTACCCACTAAAACCCTTTAACAGCATGGCTTCGAACCCCACCAAGGCCAAAATGATAAAACAT
TTCCTTGATAGACCTAGACACTCTCGCCAAAACTCAGTGAACCCCGTTGGGCTCTCCTTGAGTA
Found at i:7829683 original size:102 final size:103
Alignment explanation
Indices: 7829506--7829717 Score: 381
Period size: 102 Copynumber: 2.1 Consensus size: 103
7829496 ATGTACAAAC
*
7829506 TTGTAAAACTGTTAAAGTTTTGGAAAATTACCATTGTTTATTTGTTGAAGAACTAGACTTGAAAT
1 TTGTAAAACTGTTAAAGTTTTAGAAAATTACCATTGTTTATTTGTTGAAGAACTAGACTTGAAAT
*
7829571 TGATGGATTTTAAGCTTAGAATGTGAAAAAGGACTAGA
66 TGATAGATTTTAAGCTTAGAATGTGAAAAAGGACTAGA
*
7829609 TTGTAAAACTGTTAAAG-TTTAGAAAATTACCATTGTTTATTTGTTGAAGAATTAGACTTGAAAT
1 TTGTAAAACTGTTAAAGTTTTAGAAAATTACCATTGTTTATTTGTTGAAGAACTAGACTTGAAAT
*
7829673 TGATAGATTTTAAGCTTAGAATGTGAAAAGGGACTAGA
66 TGATAGATTTTAAGCTTAGAATGTGAAAAAGGACTAGA
7829711 TTGTAAA
1 TTGTAAA
7829718 GTTAATTTAA
Statistics
Matches: 105, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
102 88 0.84
103 17 0.16
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (103 bp):
TTGTAAAACTGTTAAAGTTTTAGAAAATTACCATTGTTTATTTGTTGAAGAACTAGACTTGAAAT
TGATAGATTTTAAGCTTAGAATGTGAAAAAGGACTAGA
Found at i:7840875 original size:22 final size:22
Alignment explanation
Indices: 7840847--7840905 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
7840837 TTTTGGTCCT
* *
7840847 TATGTTGCGACATTGAGATTTC
1 TATGTTGCGACATAGAGAATTC
*
7840869 TATGTTGTGACATAGAGAATTC
1 TATGTTGCGACATAGAGAATTC
**
7840891 CGTGTTGCGACATAG
1 TATGTTGCGACATAG
7840906 CGACCAGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (22 bp):
TATGTTGCGACATAGAGAATTC
Found at i:7843390 original size:37 final size:37
Alignment explanation
Indices: 7843325--7843533 Score: 248
Period size: 37 Copynumber: 5.7 Consensus size: 37
7843315 AGTACACAAG
*
7843325 TAATCCAACC-GA-AACACACC-AATCGCTCATAAGAGC
1 TAATCC-ACCTGATAACACGCCAAAT-GCTCATAAGAGC
*
7843361 TACTTCC-CCTGATAACACGCCAAATGCTCATAAGAGC
1 TA-ATCCACCTGATAACACGCCAAATGCTCATAAGAGC
* * *
7843398 TAGTCCACC-CAGTAACACACCAAATGCTCATAAGAGC
1 TAATCCACCTGA-TAACACGCCAAATGCTCATAAGAGC
* * *
7843435 TAATCCACCTGGTAACACACCAAATGCTCATAAGAGG
1 TAATCCACCTGATAACACGCCAAATGCTCATAAGAGC
* *
7843472 TAATCCACCCGATAACACGCTAAATGCTCATAAGAGC
1 TAATCCACCTGATAACACGCCAAATGCTCATAAGAGC
*
7843509 TAATCCACCTGATAACAAGCCAAAT
1 TAATCCACCTGATAACACGCCAAAT
7843534 CAGGGAGTAT
Statistics
Matches: 149, Mismatches: 17, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
35 2 0.01
36 8 0.05
37 136 0.91
38 3 0.02
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.18
Consensus pattern (37 bp):
TAATCCACCTGATAACACGCCAAATGCTCATAAGAGC
Found at i:7843458 original size:74 final size:74
Alignment explanation
Indices: 7843325--7843533 Score: 275
Period size: 74 Copynumber: 2.8 Consensus size: 74
7843315 AGTACACAAG
* * *
7843325 TAATCCAACCGA-AACACACC-AATCGCTCATAAGAGCTACTTCC-CCTGATAACACGCCAAATG
1 TAATCCACCCGATAACACACCAAAT-GCTCATAAGAGCTA-ATCCACCTGATAACACACCAAATG
7843387 CTCATAAGAGC
64 CTCATAAGAGC
* *
7843398 TAGTCCACCC-AGTAACACACCAAATGCTCATAAGAGCTAATCCACCTGGTAACACACCAAATGC
1 TAATCCACCCGA-TAACACACCAAATGCTCATAAGAGCTAATCCACCTGATAACACACCAAATGC
*
7843462 TCATAAGAGG
65 TCATAAGAGC
* *
7843472 TAATCCACCCGATAACACGCTAAATGCTCATAAGAGCTAATCCACCTGATAACA-AGCCAAAT
1 TAATCCACCCGATAACACACCAAATGCTCATAAGAGCTAATCCACCTGATAACACA-CCAAAT
7843534 CAGGGAGTAT
Statistics
Matches: 120, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
72 1 0.01
73 12 0.10
74 103 0.86
75 4 0.03
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.18
Consensus pattern (74 bp):
TAATCCACCCGATAACACACCAAATGCTCATAAGAGCTAATCCACCTGATAACACACCAAATGCT
CATAAGAGC
Found at i:7847067 original size:31 final size:29
Alignment explanation
Indices: 7847032--7847099 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 29
7847022 GAATTTTTTT
* *
7847032 TAAAAACTACATAA-AAGAATAAACACACA
1 TAAAAACTA-AAAACAAAAATAAACACACA
*
7847061 AATAAAACATAAAAACAAAAATAAACACACA
1 TA-AAAAC-TAAAAACAAAAATAAACACACA
7847092 TAAAAACT
1 TAAAAACT
7847100 TATGTGCACC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
29 2 0.06
30 13 0.41
31 17 0.53
ACGTcount: A:0.69, C:0.16, G:0.01, T:0.13
Consensus pattern (29 bp):
TAAAAACTAAAAACAAAAATAAACACACA
Found at i:7847288 original size:14 final size:13
Alignment explanation
Indices: 7847269--7847301 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
7847259 TGTTGAATAT
7847269 AAGAAAAACAAAC
1 AAGAAAAACAAAC
7847282 AAAGAAAAACAAAC
1 -AAGAAAAACAAAC
7847296 AAGAAA
1 AAGAAA
7847302 CAATAACAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.79, C:0.12, G:0.09, T:0.00
Consensus pattern (13 bp):
AAGAAAAACAAAC
Found at i:7849400 original size:20 final size:22
Alignment explanation
Indices: 7849377--7849419 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
7849367 CACTTTATTG
7849377 AATTTAACTAA-ACTT-ACTAA
1 AATTTAACTAATACTTAACTAA
*
7849397 AATTTAATTAATACTTAACTAA
1 AATTTAACTAATACTTAACTAA
7849419 A
1 A
7849420 GTGCTTATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 4 0.20
22 6 0.30
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
AATTTAACTAATACTTAACTAA
Found at i:7867087 original size:21 final size:21
Alignment explanation
Indices: 7867045--7867086 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
7867035 GTTTGGATAA
7867045 TCTTTTGATTATTTTTATTTT
1 TCTTTTGATTATTTTTATTTT
*
7867066 TCTTTTTATTA-TTTTATTTT
1 TCTTTTGATTATTTTTATTTT
7867086 T
1 T
7867087 TTCCTCTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (21 bp):
TCTTTTGATTATTTTTATTTT
Found at i:7875722 original size:5 final size:5
Alignment explanation
Indices: 7875712--7875737 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7875702 TGAGCATTCG
7875712 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
7875738 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:7877982 original size:57 final size:57
Alignment explanation
Indices: 7877839--7877983 Score: 193
Period size: 57 Copynumber: 2.5 Consensus size: 57
7877829 TTTATATTGT
* * **
7877839 GTAAGACCATAGTTGAAAGATGCTATGGAATCAAAAGATGATATGACAGTATTGTGA
1 GTAAGACCATAGTTGAAAGACGCTATGGCATCAAAAGATGATATGACAGTATAATGA
* * *
7877896 GTAATACCATAGCTGAAAGACGCTATGGCATCAAAAGATGATTTGAC-GATATAATGA
1 GTAAGACCATAGTTGAAAGACGCTATGGCATCAAAAGATGATATGACAG-TATAATGA
* *
7877953 GTAAGACCATAGTTGAAAGACACTGTGGCAT
1 GTAAGACCATAGTTGAAAGACGCTATGGCAT
7877984 TGTATATAGT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
56 1 0.01
57 75 0.99
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25
Consensus pattern (57 bp):
GTAAGACCATAGTTGAAAGACGCTATGGCATCAAAAGATGATATGACAGTATAATGA
Found at i:7878020 original size:27 final size:27
Alignment explanation
Indices: 7877989--7878078 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
7877979 GGCATTGTAT
* * *
7877989 ATAGTCCAATGGGATGTTAAACATGGG
1 ATAGTCCAACGGGACGTTAAACATAGG
* * *
7878016 ATAGTCCGACAGGACGTTAAACACAGG
1 ATAGTCCAACGGGACGTTAAACATAGG
*
7878043 ATAGTCCGACGGGACGTTAAACATAGG
1 ATAGTCCAACGGGACGTTAAACATAGG
*
7878070 AAAGTCCAA
1 ATAGTCCAA
7878079 TGAGACAGTA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.19
Consensus pattern (27 bp):
ATAGTCCAACGGGACGTTAAACATAGG
Found at i:7883215 original size:17 final size:17
Alignment explanation
Indices: 7883193--7883225 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7883183 ATTAAATATA
7883193 TATATTTGATTAAAAAG
1 TATATTTGATTAAAAAG
7883210 TATATTTGATTAAAAA
1 TATATTTGATTAAAAA
7883226 TAAAATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (17 bp):
TATATTTGATTAAAAAG
Found at i:7884206 original size:6 final size:6
Alignment explanation
Indices: 7884189--7884226 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
7884179 ACTTAAAAAC
*
7884189 ACCCTAA ACCCTA ACCCTA ACCCTA ACACTA ACCCTA A
1 ACCCT-A ACCCTA ACCCTA ACCCTA ACCCTA ACCCTA A
7884227 TCTAATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.16
Consensus pattern (6 bp):
ACCCTA
Found at i:7884381 original size:102 final size:102
Alignment explanation
Indices: 7884269--7884590 Score: 281
Period size: 102 Copynumber: 3.0 Consensus size: 102
7884259 TCAAGTAACC
*
7884269 CTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAGTCCAATTTTGA
1 CTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTGA
7884334 AAAATTTATAAATAATTTAATTGACAAACCCTAAACT
66 AAAATTTATAAATAATTTAATTGACAAACCCTAAACT
* * * * * *
7884371 CTAAACCCTAATTTATTTGATTTTTTCTTAAAAACTCTTAACTTAAAAGTACCCTAAACCTTAAC
1 CTAAACCCTAATTTAATTGATTTTTTCTTAAAAA---ATAA--T--AA--ACACGAAAAC-TAAT
*** ** * ** * * *
7884436 CCTAACCCT-AATCTGATTTTTAAAATTTTTTTAATT-A-AATTACTCAAGTAACC
56 CC-AATTTTGAA--AAATTTAT-AAA-TAATTTAATTGACAA--ACCCTA--AACT
7884489 CTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTGA
1 CTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTGA
*
7884554 AAAATTTATAAATAATTGAATTGACAAACCCTAAACT
66 AAAATTTATAAATAATTTAATTGACAAACCCTAAACT
7884591 AGAGGTGTTC
Statistics
Matches: 162, Mismatches: 36, Indels: 44
0.67 0.15 0.18
Matches are distributed among these distances:
102 36 0.22
104 11 0.07
105 7 0.04
106 7 0.04
107 4 0.02
108 7 0.04
109 9 0.06
111 9 0.06
112 6 0.04
113 4 0.02
114 7 0.04
115 7 0.04
116 12 0.07
118 36 0.22
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.36
Consensus pattern (102 bp):
CTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTGA
AAAATTTATAAATAATTTAATTGACAAACCCTAAACT
Found at i:7885001 original size:7 final size:7
Alignment explanation
Indices: 7884991--7885035 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
7884981 TTTAATTTTT
7884991 AACCCTA
1 AACCCTA
*
7884998 AACCCCA
1 AACCCTA
**
7885005 AACTTTAA
1 AACCCT-A
7885013 AACCCTA
1 AACCCTA
7885020 AACCCTA
1 AACCCTA
7885027 AACCCTA
1 AACCCTA
7885034 AA
1 AA
7885036 ACCCAAAAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
7 26 0.84
8 5 0.16
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.16
Consensus pattern (7 bp):
AACCCTA
Found at i:7885016 original size:22 final size:22
Alignment explanation
Indices: 7884991--7885039 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7884981 TTTAATTTTT
**
7884991 AACCCTAAACCCCAAACTTTAA
1 AACCCTAAACCCCAAACCCTAA
*
7885013 AACCCTAAACCCTAAACCCTAA
1 AACCCTAAACCCCAAACCCTAA
7885035 AACCC
1 AACCC
7885040 AAAAACAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.41, G:0.00, T:0.14
Consensus pattern (22 bp):
AACCCTAAACCCCAAACCCTAA
Found at i:7885236 original size:82 final size:82
Alignment explanation
Indices: 7885099--7885258 Score: 250
Period size: 82 Copynumber: 2.0 Consensus size: 82
7885089 CTAACATCAC
* * * *
7885099 GCTGACGTGGACGCGCTTTTGGGGAAATGAGCCCATTCCGGTAAATAATTATTTACCAGTCCCAT
1 GCTGACGTGGACGCGCCTTCGGGGAAATGAGCCCATTCCAGTAAATAATTATTTACCAGGCCCAT
7885164 TTCGGTAAATTTTAAAT
66 TTCGGTAAATTTTAAAT
*
7885181 GCTGACGTGGACGCGCCTTCGGGGAAATTG-GCCCATTCCAGTAAATAATTATTTACCGGGCCCA
1 GCTGACGTGGACGCGCCTTCGGGGAAA-TGAGCCCATTCCAGTAAATAATTATTTACCAGGCCCA
*
7885245 TTTCTGTAAATTTT
65 TTTCGGTAAATTTT
7885259 TAAAAAATAG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
82 69 0.97
83 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (82 bp):
GCTGACGTGGACGCGCCTTCGGGGAAATGAGCCCATTCCAGTAAATAATTATTTACCAGGCCCAT
TTCGGTAAATTTTAAAT
Found at i:7886421 original size:22 final size:22
Alignment explanation
Indices: 7886361--7886424 Score: 110
Period size: 22 Copynumber: 2.9 Consensus size: 22
7886351 TCGGATTCCG
*
7886361 TGATTTATAAAGAAAAACACCA
1 TGATTTATAAAGAAAATCACCA
7886383 TGATTTATAAAGAAAATCACCA
1 TGATTTATAAAGAAAATCACCA
*
7886405 TGATTTATAAATAAAATCAC
1 TGATTTATAAAGAAAATCAC
7886425 TATGGTCTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (22 bp):
TGATTTATAAAGAAAATCACCA
Found at i:7901758 original size:5 final size:5
Alignment explanation
Indices: 7901748--7901778 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
7901738 GAGATAGAAT
7901748 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
7901779 ATATTTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:7901958 original size:26 final size:26
Alignment explanation
Indices: 7901922--7901974 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
7901912 TATATACGGG
7901922 TTAGTTTCTTTCCTTACTTAGTTGCT
1 TTAGTTTCTTTCCTTACTTAGTTGCT
7901948 TTAGTTTCTTTCCTTACTTAGTTGCT
1 TTAGTTTCTTTCCTTACTTAGTTGCT
7901974 T
1 T
7901975 CAATTATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.11, C:0.19, G:0.11, T:0.58
Consensus pattern (26 bp):
TTAGTTTCTTTCCTTACTTAGTTGCT
Found at i:7906934 original size:15 final size:15
Alignment explanation
Indices: 7906910--7906949 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7906900 GTTTCCCTAC
7906910 AAAA-TAAAATAAAT
1 AAAATTAAAATAAAT
7906924 AAAATTAAAATAAAT
1 AAAATTAAAATAAAT
* *
7906939 TAAATAAAAAT
1 AAAATTAAAAT
7906950 TAAAATGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAATTAAAATAAAT
Found at i:7906935 original size:20 final size:21
Alignment explanation
Indices: 7906910--7906955 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
7906900 GTTTCCCTAC
7906910 AAAATAAAATAAAT-AAAATT
1 AAAATAAAATAAATAAAAATT
*
7906930 AAAATAAATTAAATAAAAATT
1 AAAATAAAATAAATAAAAATT
7906951 AAAAT
1 AAAAT
7906956 GTGTATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAAAATAAATAAAAATT
Found at i:7908559 original size:31 final size:31
Alignment explanation
Indices: 7908521--7908584 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
7908511 CTGTGACGAG
7908521 ATAGTTTACTATGTCTGCATACCAAGCATGA
1 ATAGTTTACTATGTCTGCATACCAAGCATGA
*
7908552 ATAGTTTACTATGTCTGCGTACCAAGCATGA
1 ATAGTTTACTATGTCTGCATACCAAGCATGA
7908583 AT
1 AT
7908585 CGCTTTTGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (31 bp):
ATAGTTTACTATGTCTGCATACCAAGCATGA
Found at i:7916765 original size:65 final size:69
Alignment explanation
Indices: 7916665--7917002 Score: 231
Period size: 69 Copynumber: 5.0 Consensus size: 69
7916655 AAGTATAAGT
* * * * * * * *
7916665 AATATCAAATCTAAATATTGAAAAAGGTAAAAGAATAATGAATAAATAGAT-AA-AACAAATAT-
1 AATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAATAAATAAATCAATAAAAAATATA
* *
7916727 ACAT
66 AAAA
* *
7916731 AATATTAAATTTAAGTATTT-TAGAAGTAAAAGAATAATAAATAAATAAATCAATAAAAAATATA
1 AATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAATAAATAAATCAATAAAAAATATA
7916795 AAAA
66 AAAA
* **
7916799 AATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAACAAATATAAAT-AATATTAAAT-
1 AATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAA-TAA-ATAAATCAATAAAAAATA
* *
7916862 T-TAGA
64 TAAAAA
* ** * * *
7916867 TAT-TTAAAGAGTAAAAG-A-ATAATAAA-TAAATAGATAAAATAAATAAATAAAT-AGATAAAA
1 AATATT-AA-A-TTTAAGTATTTAAAAAAGTAAA-AGA-ATAATAAATAAATAAATCA-ATAAAA
*
7916927 CAA-ATAAACAT
60 -AATATAAA-AA
* * *
7916938 AATATTAAATTTAAGTATTT-AAAAAGTAAAAGAATGATAAATAAATAGAT-AA-AACAAATATA
1 AATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAATAAATAAATCAATAAAAAATATA
7917000 AAA
66 AAA
7917003 GAATGAAATT
Statistics
Matches: 211, Mismatches: 40, Indels: 42
0.72 0.14 0.14
Matches are distributed among these distances:
65 25 0.12
66 21 0.10
67 29 0.14
68 44 0.21
69 51 0.24
70 24 0.11
71 15 0.07
72 2 0.01
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.28
Consensus pattern (69 bp):
AATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAATAAATAAATCAATAAAAAATATA
AAAA
Found at i:7916856 original size:53 final size:52
Alignment explanation
Indices: 7916782--7916898 Score: 166
Period size: 53 Copynumber: 2.2 Consensus size: 52
7916772 TAAATAAATC
7916782 AATAAAAAATATAAAAAAATATTAAATTTA-AGTATTTAAAAAAGTAAAAGAAT
1 AATAAAAAATATAAAAAAATATTAAATTTAGA-TATTT-AAAAAGTAAAAGAAT
* *
7916835 AATAAACAAATAT-AAATAATATTAAATTTAGATATTTAAAGAGTAAAAGAAT
1 AATAAA-AAATATAAAAAAATATTAAATTTAGATATTTAAAAAGTAAAAGAAT
7916887 AATAAATAAATA
1 AATAAA-AAATA
7916899 GATAAAATAA
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
52 25 0.42
53 27 0.46
54 7 0.12
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (52 bp):
AATAAAAAATATAAAAAAATATTAAATTTAGATATTTAAAAAGTAAAAGAAT
Found at i:7916896 original size:4 final size:4
Alignment explanation
Indices: 7916887--7916925 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
7916877 GTAAAAGAAT
* *
7916887 AATA AATA AATA GATAA AATA AATA AATA AATA GATA AA
1 AATA AATA AATA AAT-A AATA AATA AATA AATA AATA AA
7916926 ACAAATAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:7916912 original size:21 final size:21
Alignment explanation
Indices: 7916887--7916934 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
7916877 GTAAAAGAAT
*
7916887 AATAAATAAATAGATAAAATA
1 AATAAATAAATAGATAAAACA
7916908 AATAAATAAATAGATAAAACA
1 AATAAATAAATAGATAAAACA
7916929 AATAAA
1 AATAAA
7916935 CATAATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (21 bp):
AATAAATAAATAGATAAAACA
Found at i:7916914 original size:53 final size:53
Alignment explanation
Indices: 7916782--7916898 Score: 168
Period size: 52 Copynumber: 2.2 Consensus size: 53
7916772 TAAATAAATC
*
7916782 AATAAA-AAATATAAAAAAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAAT
1 AATAAACAAATAT-AAATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAAT
*
7916835 AATAAACAAATATAAATAATATTAAATTT-AGATATTT-AAAGAGTAAAAGAAT
1 AATAAACAAATATAAATAATATTAAATTTAAG-TATTTAAAAAAGTAAAAGAAT
*
7916887 AATAAATAAATA
1 AATAAACAAATA
7916899 GATAAAATAA
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
52 27 0.46
53 26 0.44
54 6 0.10
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (53 bp):
AATAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAAT
Found at i:7916940 original size:86 final size:86
Alignment explanation
Indices: 7916838--7916997 Score: 261
Period size: 86 Copynumber: 1.9 Consensus size: 86
7916828 AAAGAATAAT
*
7916838 AAACAAATATAAATAATATTAAATTT-AGATATTTAAAGAGTAAAAGAATAATAAATAAATAGAT
1 AAACAAATATAAATAATATTAAATTTAAG-TATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
*
7916902 AAAATAAATAAATAAATAGATA
65 AAAACAAATAAATAAATAGATA
*
7916924 AAACAAATA-AACATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATGATAAATAAATAGAT
1 AAACAAATATAA-ATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
7916988 AAAACAAATA
65 AAAACAAATA
7916998 TAAAAGAATG
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
85 2 0.03
86 65 0.94
87 2 0.03
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.27
Consensus pattern (86 bp):
AAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAGATA
AAACAAATAAATAAATAGATA
Found at i:7918124 original size:4 final size:4
Alignment explanation
Indices: 7918117--7918149 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
7918107 CTAGCTAGGG
7918117 TTTC TTTC TTTC TTTC TTTC TTTC TTT- TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
7918150 CTAAAAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTC
Found at i:7918517 original size:44 final size:44
Alignment explanation
Indices: 7918456--7919264 Score: 649
Period size: 44 Copynumber: 18.2 Consensus size: 44
7918446 AGAGGTACAG
** * * * *
7918456 GATTTGTTGCTTCAATCTACTCCACTGTAACTTCAGGTAGATTA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * *
7918500 GACTTGTAACTTTAATCTGCTCCGCTGCAACTTCAGGGCGATGA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* ** * * * *
7918544 GACTCATAACTTCAATCTACTCCACTGCAACTTTAGGGAAATGA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
7918588 GATTTGTAACTTCAATCTACTCCACTGCAACTT-AAGGAGATAA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * *
7918631 GATTTGTGACTTCAATCTGCTCTATTGCAACTTCAGAGAGAT-A
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
7918674 GATTTGTTATCTTCAATCTGTTCCACTGCAACTTCAGGGAGATAA
1 GATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
7918719 GATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAT
1 GATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* ** * * *
7918764 GGTTTGTGGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* ** * * *
7918808 GATTTACTATTTTCAATCTGTTCCATTGCAACTTTAGGGAGATAA
1 GATTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* ** * ** * *
7918853 AATTTGTGGCTTTAATCTATTCTACTGCAACTTCAGAGAGATAA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
** * * *
7918897 GATTTGTTATTTTCAATCTACTCCATTGCAATTTCAGGGAGATAA
1 GATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
** ** * * ** **
7918942 GATTTGTGGCTTTC-ATCTATTCTATTGTGACTTCAAAGAGATAA
1 GATTTGTAAC-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
7918986 GATTTGCTATCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
1 GATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
** * *
7919031 GATTTGTGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
** ** * * ** **
7919075 GATTTGTGGCTTTC-ATCTATTCTATTGTGACTTCAAAGAGATAA
1 GATTTGTAAC-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
7919119 GATTTGCTATCTTCAATCTGCTCCACTTCAACTTCAGGGAGATAA
1 GATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
** * *
7919164 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
7919208 GATTTACCACGATAACTTCAATCTG-TCCCACTACAACTTCAGGG-GTATAG
1 GATTT-----G-TAACTTCAATCTGCT-CCACTGCAACTTCAGGGAG-ATAA
7919258 GATTTGT
1 GATTTGT
7919265 GGTTTCACTG
Statistics
Matches: 610, Mismatches: 136, Indels: 38
0.78 0.17 0.05
Matches are distributed among these distances:
43 43 0.07
44 351 0.58
45 180 0.30
49 3 0.00
50 33 0.05
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (44 bp):
GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
Found at i:7918753 original size:89 final size:89
Alignment explanation
Indices: 7918465--7919212 Score: 688
Period size: 89 Copynumber: 8.4 Consensus size: 89
7918455 GGATTTGTTG
* * * * * * * *
7918465 CTTCAATCTACTCCACTGTAACTTCAGGTAGATTAGACTTGTAACTTTAATCTGCTCCGCTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAA
* * * *
7918530 CTTCAGGGCGATGAGA-CT-CATAA
66 CTTCAGGGAGATAAGATTTGC-TAT
* * * * * *
7918553 CTTCAATCTACTCCACTGCAACTTTAGGGAAATGAGATTTGTAACTTCAATCTACTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAA
*
7918618 CTT-AAGGAGATAAGATTTG-TGA-
66 CTTCAGGGAGATAAGATTTGCT-AT
* * * * *
7918640 CTTCAATCTGCTCTATTGCAACTTCAGAGAGAT-AGATTTGTTATCTTCAATCTGTTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCCACTGCA
7918704 ACTTCAGGGAGATAAGATTTGCTAT
65 ACTTCAGGGAGATAAGATTTGCTAT
* * * * *
7918729 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATATGGTTTGTGGCTTTAATCTGCTCTACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAA
* *
7918794 CTTCAGAGAGATAAGATTTACTAT
66 CTTCAGGGAGATAAGATTTGCTAT
* * * * * * * ** *
7918818 TTTCAATCTGTTCCATTGCAACTTTAGGGAGATAAAATTTGTGGCTTTAATCTATTCTACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAA
* *
7918883 CTTCAGAGAGATAAGATTTGTTAT
66 CTTCAGGGAGATAAGATTTGCTAT
* * * * * ** * * **
7918907 TTTCAATCTACTCCATTGCAATTTCAGGGAGATAAGATTTGTGGCTTTC-ATCTATTCTATTGTG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC-TTCAATCTGCTCCACTGCA
**
7918971 ACTTCAAAGAGATAAGATTTGCTAT
65 ACTTCAGGGAGATAAGATTTGCTAT
* * * *
7918996 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAATCTGCTCCACTACAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAA
**
7919061 CTTCAGGGAGATAAGATTTG-TGG
66 CTTCAGGGAGATAAGATTTGCTAT
** * * ** ** * *
7919084 CTTTC-ATCTATTCTATTGTGACTTCAAAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTTC
1 C-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCCACTGC
**
7919148 AACTTCAGGGAGATAAGATTTG-TGG
64 AACTTCAGGGAGATAAGATTTGCTAT
* *
7919173 CTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
7919213 ACCACGATAA
Statistics
Matches: 552, Mismatches: 95, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
86 7 0.01
87 61 0.11
88 110 0.20
89 367 0.66
90 7 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (89 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAA
CTTCAGGGAGATAAGATTTGCTAT
Found at i:7918798 original size:133 final size:133
Alignment explanation
Indices: 7918465--7919212 Score: 772
Period size: 133 Copynumber: 5.6 Consensus size: 133
7918455 GGATTTGTTG
* * * * * *
7918465 CTTCAATCTACTCCACTGTAACTTCAGGTAGATTAGACTTGTAACTTTAATCTGCTCCGCTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAA
* * * * ** * * * * * *
7918530 CTTCAGGGCGATGAGACTCATAACTTCAATCTACTCCACTGCAACTTTAGGGAAATGAGATTTG-
66 CTTCAGAGAGATAAGATTTGTAGCTTCAATCTATTCCATTGCAACTTCAGGGAGATAAGATTTGC
*
7918594 TAA
131 TAT
* * * *
7918597 CTTCAATCTACTCCACTGCAACTT-AAGGAGATAAGATTTGTGACTTCAATCTGCTCTATTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAA
* * *
7918661 CTTCAGAGAGAT-AGATTTGTTATCTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTG
66 CTTCAGAGAGATAAGATTTG-TAGCTTCAATCTATTCCATTGCAACTTCAGGGAGATAAGATTTG
7918725 CTAT
130 CTAT
* * * * *
7918729 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATATGGTTTGTGGCTTTAATCTGCTCTACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAA
* ** * * *
7918794 CTTCAGAGAGATAAGATTTACTATTTTCAATCTGTTCCATTGCAACTTTAGGGAGATAAAATTTG
66 CTTCAGAGAGATAAGATTT-GTAGCTTCAATCTATTCCATTGCAACTTCAGGGAGATAAGATTTG
**
7918859 -TGG
130 CTAT
* * * * * * * *
7918862 CTTTAATCTATTCTACTGCAACTTCAGAGAGATAAGATTTGTTATTTTCAATCTACTCCATTGCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGACTTT-AATCTGCTCCACTGCA
* * * * ** **
7918927 ATTTCAGGGAGATAAGATTTGTGGCTTTC-ATCTATTCTATTGTGACTTCAAAGAGATAAGATTT
65 ACTTCAGAGAGATAAGATTTGTAGC-TTCAATCTATTCCATTGCAACTTCAGGGAGATAAGATTT
7918991 GCTAT
129 GCTAT
* * * *
7918996 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAATCTGCTCCACTACAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAA
* * * ** **
7919061 CTTCAGGGAGATAAGATTTGTGGCTTTC-ATCTATTCTATTGTGACTTCAAAGAGATAAGATTTG
66 CTTCAGAGAGATAAGATTTGTAGC-TTCAATCTATTCCATTGCAACTTCAGGGAGATAAGATTTG
7919125 CTAT
130 CTAT
* * *
7919129 CTTCAATCTGCTCCACTTCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAA
7919194 CTTCA-AGGAGATAAGATTT
66 CTTCAGA-GAGATAAGATTT
7919213 ACCACGATAA
Statistics
Matches: 525, Mismatches: 82, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
130 4 0.01
131 79 0.15
132 48 0.09
133 274 0.52
134 120 0.23
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (133 bp):
CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAA
CTTCAGAGAGATAAGATTTGTAGCTTCAATCTATTCCATTGCAACTTCAGGGAGATAAGATTTGC
TAT
Found at i:7920793 original size:27 final size:27
Alignment explanation
Indices: 7920763--7920826 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
7920753 ATGTTTTATT
*
7920763 TTAATTCATG-CATTTAATATGTCTTAG
1 TTAATACATGTCA-TTAATATGTCTTAG
*
7920790 TTAATACATGTCATTAATTTGTCTTAG
1 TTAATACATGTCATTAATATGTCTTAG
*
7920817 CTTATTACAT
1 -TTAATACAT
7920827 CATTTTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.69
28 10 0.31
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.48
Consensus pattern (27 bp):
TTAATACATGTCATTAATATGTCTTAG
Found at i:7923012 original size:184 final size:184
Alignment explanation
Indices: 7922703--7923070 Score: 648
Period size: 184 Copynumber: 2.0 Consensus size: 184
7922693 CAAGGTCCAC
*
7922703 AAAGAGAACGATGCCGCCCAGAAATTAACCAAGAAGACCTCTATGACTGAAGTGAAGCCAAAAGT
1 AAAGAGAACGATGCCGCCCAGAAATTAACCAAGAAGACCTCTATGACCGAAGTGAAGCCAAAAGT
7922768 GACCAAGGGTCAAACCAAAGTGAAAGGCGAAGAGTTCCAAGAAATCGTGGCCAAAGAGAACGTGG
66 GACCAAGGGTCAAACCAAAGTGAAAGGCGAAGAGTTCCAAGAAATCGTGGCCAAAGAGAACGTGG
* *
7922833 ACGGATCGATGAAGACCTTAAAAATATCAAGCTTTTTATTCCACCATTTCAAGG
131 ACAGATCGATGAAGACCTTAAAAATATCAAGCTCTTTATTCCACCATTTCAAGG
* *
7922887 AAAGAGAACGATGCCGCCCAGAAATTAACCAAGAAGACCTCTATGACCGAAGTGAGGCCGAAAGT
1 AAAGAGAACGATGCCGCCCAGAAATTAACCAAGAAGACCTCTATGACCGAAGTGAAGCCAAAAGT
* *
7922952 GACTAAGGGTCAAACCAAAGTGAAAGGCGGAGAGTTCCAAGAAAAT-GTGGCCAAAGAGAACGTG
66 GACCAAGGGTCAAACCAAAGTGAAAGGCGAAGAGTTCCAAG-AAATCGTGGCCAAAGAGAACGTG
*
7923016 GACAGATTGATGAAGACCTTAAAAATATCAAGCTCTTTATTCCACCATTTCAAGG
130 GACAGATCGATGAAGACCTTAAAAATATCAAGCTCTTTATTCCACCATTTCAAGG
7923071 TCGATCAGAC
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
184 171 0.98
185 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.17
Consensus pattern (184 bp):
AAAGAGAACGATGCCGCCCAGAAATTAACCAAGAAGACCTCTATGACCGAAGTGAAGCCAAAAGT
GACCAAGGGTCAAACCAAAGTGAAAGGCGAAGAGTTCCAAGAAATCGTGGCCAAAGAGAACGTGG
ACAGATCGATGAAGACCTTAAAAATATCAAGCTCTTTATTCCACCATTTCAAGG
Found at i:7926628 original size:22 final size:22
Alignment explanation
Indices: 7926598--7926640 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7926588 ACACCAAAAC
* *
7926598 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCACTTTTTT
7926620 AGGCCTTTAGCGGCACTTTTT
1 AGGCCTTTAGCGGCACTTTTT
7926641 AGCGCCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.21, G:0.26, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCACTTTTTT
Found at i:7926776 original size:43 final size:42
Alignment explanation
Indices: 7926723--7926845 Score: 194
Period size: 43 Copynumber: 2.9 Consensus size: 42
7926713 TTTTATAAAT
* *
7926723 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCATTT-CTCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTTAC-CAC
7926766 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTAACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT-ACCAC
7926809 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT
7926846 NNNNNNNNNN
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
42 3 0.04
43 72 0.95
44 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.20
Consensus pattern (42 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTACCAC
Found at i:7934376 original size:41 final size:41
Alignment explanation
Indices: 7934318--7934517 Score: 337
Period size: 41 Copynumber: 4.9 Consensus size: 41
7934308 AAATGTTTTT
*
7934318 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
*
7934359 GCGGCGCTTTTTTAAAAACGCCGTTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
*
7934400 GCGGCGCTTTTTTAAAAACGCTGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
* *
7934441 GCGGCGCTTTTTTAAAAACGCAGCTAAAGATCTAAGCATTA
1 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
*
7934482 GCGGCGCTTTTTTTAAAAACGCCACTAAAGATCTGA
1 GCGGCGC-TTTTTTAAAAACGCCGCTAAAGATCTGA
7934518 AAGGTACAAA
Statistics
Matches: 149, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
41 124 0.83
42 25 0.17
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (41 bp):
GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
Found at i:7934592 original size:40 final size:41
Alignment explanation
Indices: 7934548--7934684 Score: 118
Period size: 40 Copynumber: 3.4 Consensus size: 41
7934538 TCGGCTTAGG
* *
7934548 TTTTTTGCGGCGTTTTTCCAAAAAATGCCGCTAATGCT-AA
1 TTTTTAGCGGCGTTTTTCCAAAAAACGCCGCTAATGCTCAA
* *** *
7934588 TTTTTAGCGGCG-CTTTCCTGGAAACGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTCCAAAAAACGCCGCTAATGCTCAA
* * ** * *
7934628 TCTTTAGCGGCG-TTTTACGTAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTCCAAAAAACGCCGCTAATGCTCAA
* *
7934668 TTTTTAGTGGCATTTTT
1 TTTTTAGCGGCGTTTTT
7934685 TGTCCAAAGG
Statistics
Matches: 78, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 20 0.26
40 54 0.69
41 4 0.05
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTTCCAAAAAACGCCGCTAATGCTCAA
Found at i:7938858 original size:86 final size:86
Alignment explanation
Indices: 7938713--7938968 Score: 469
Period size: 86 Copynumber: 3.0 Consensus size: 86
7938703 TGGAAAGCAG
* * *
7938713 AATTTGCCATCGGGCCATCC-TTCAATTCAGAGTAGTCAACTCCATCATGTACTTTAGAGGGTCC
1 AATTTTCCATCGGGCTATCCTTTC-ATTCAGAGTAGTCGACTCCATCATGTACTTTAGAGGGTCC
7938777 ATTTTTTAGATGAGCCAAGTAA
65 ATTTTTTAGATGAGCCAAGTAA
7938799 AATTTTCCATCGGGCTATCCTTTCATTCAGAGTAGTCGACTCCATCATGTACTTTAGAGGGTCCA
1 AATTTTCCATCGGGCTATCCTTTCATTCAGAGTAGTCGACTCCATCATGTACTTTAGAGGGTCCA
7938864 TTTTTTAGATGAGCCAAGTAA
66 TTTTTTAGATGAGCCAAGTAA
7938885 AATTTTCCATCGGGCTATCCTTTCATTCAGAGTAGTCGACTCCATCATGTACTTTAGAGGGTCCA
1 AATTTTCCATCGGGCTATCCTTTCATTCAGAGTAGTCGACTCCATCATGTACTTTAGAGGGTCCA
7938950 TTTTTTAGATGAGCCAAGT
66 TTTTTTAGATGAGCCAAGT
7938969 CGTATGGTAC
Statistics
Matches: 166, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
86 163 0.98
87 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (86 bp):
AATTTTCCATCGGGCTATCCTTTCATTCAGAGTAGTCGACTCCATCATGTACTTTAGAGGGTCCA
TTTTTTAGATGAGCCAAGTAA
Found at i:7947963 original size:19 final size:19
Alignment explanation
Indices: 7947937--7947979 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7947927 TTTAAATATT
7947937 TAAA-AAATAAA-AGAATAA
1 TAAATAAATAAATAG-ATAA
7947955 TAAATAAATAAATAGATAA
1 TAAATAAATAAATAGATAA
*
7947974 AAAATA
1 TAAATA
7947980 TAAAATGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (19 bp):
TAAATAAATAAATAGATAA
Found at i:7947968 original size:15 final size:17
Alignment explanation
Indices: 7947941--7947979 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
7947931 AATATTTAAA
7947941 AAATAAA-AGAATA-AT
1 AAATAAATAGAATAGAT
7947956 AAATAAATA-AATAGAT
1 AAATAAATAGAATAGAT
7947972 AAA-AAATA
1 AAATAAATA
7947980 TAAAATGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (17 bp):
AAATAAATAGAATAGAT
Found at i:7950042 original size:22 final size:22
Alignment explanation
Indices: 7950017--7950078 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
7950007 ACAAATACAT
*
7950017 GAGCACAAAAGTGCTAAATCAG
1 GAGCACAAAAGTGCTAAATCAA
* *
7950039 GAGCACAAAAGTCCTACATTCAA
1 GAGCACAAAAGTGCTA-AATCAA
**
7950062 GAGCACCGAAGTGCTAA
1 GAGCACAAAAGTGCTAA
7950079 CTTCATAAGC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 16 0.48
23 17 0.52
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (22 bp):
GAGCACAAAAGTGCTAAATCAA
Found at i:7950083 original size:23 final size:23
Alignment explanation
Indices: 7950063--7950113 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
7950053 TACATTCAAG
7950063 AGCACCGAAGTGCTAACTTCATA
1 AGCACCGAAGTGCTAACTTCATA
* *
7950086 AGCACCGGAGTGCTAACTTCACA
1 AGCACCGAAGTGCTAACTTCATA
7950109 AGCAC
1 AGCAC
7950114 GTTATGGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (23 bp):
AGCACCGAAGTGCTAACTTCATA
Found at i:7950728 original size:40 final size:40
Alignment explanation
Indices: 7950673--7950764 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 40
7950663 TGGTGTTGCA
* * *
7950673 ACATCTGACCCTTAGTGTTGCAACATCAACTAGTGTCACG
1 ACATCTGACCTTTAGTGTTGCAACATCAACCAGCGTCACG
* * *
7950713 ACATCTGACCTTTAGTGTTGCGACATCAGCCAGCGTCGCG
1 ACATCTGACCTTTAGTGTTGCAACATCAACCAGCGTCACG
*
7950753 ACGTCTGACCTT
1 ACATCTGACCTT
7950765 CAATGTCGTG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
ACATCTGACCTTTAGTGTTGCAACATCAACCAGCGTCACG
Found at i:7950736 original size:22 final size:21
Alignment explanation
Indices: 7950665--7950739 Score: 66
Period size: 22 Copynumber: 3.6 Consensus size: 21
7950655 ACTATCTCTG
7950665 GTGTTGCAACATCTGACCCTTA
1 GTGTTGCAACATCTGA-CCTTA
*
7950687 GTGTTGCAACATC--AAC-TA
1 GTGTTGCAACATCTGACCTTA
** *
7950705 GTGTCACGACATCTGACCTTTA
1 GTGTTGCAACATCTGACC-TTA
*
7950727 GTGTTGCGACATC
1 GTGTTGCAACATC
7950740 AGCCAGCGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
18 12 0.29
19 1 0.02
20 3 0.07
22 26 0.62
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (21 bp):
GTGTTGCAACATCTGACCTTA
Found at i:7952865 original size:32 final size:32
Alignment explanation
Indices: 7952821--7953183 Score: 411
Period size: 32 Copynumber: 11.3 Consensus size: 32
7952811 TATGTTTTAT
* *
7952821 ATATTGACGAATTGAATTGTATAGGTATACAC
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* * * * *
7952853 CTATTGCTGAATTGAATTATATATATATATAC
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* *
7952885 TTATATTGCCAAATTGAATTGTATAGGTATACAC
1 --ATATTGCCGAATTGAATTGTATATGTATACAC
* * **
7952919 CTATTGCCGAATTGAATTGTATATATATACTT
1 ATATTGCCGAATTGAATTGTATATGTATACAC
*
7952951 ATATTGCCGAATTGAATTGTATATATATACAC
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* * **
7952983 CTATTGCCGAATTAAATTGTATATGTATACTT
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* *
7953015 ATATTGCCGGATTGAATTGTATAGGTATACAC
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* **
7953047 CTATTGCCGAATTGAATTGTATATGTATACTT
1 ATATTGCCGAATTGAATTGTATATGTATACAC
*
7953079 ATATTGCCGAATTGAATTGTATAGGTATACAC
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* * ** *
7953111 CTATTGCCGAATTGATTTGTATATGTATTTAT
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* * **
7953143 ATATTGCTGAATTAAATTGTATATGTATACTT
1 ATATTGCCGAATTGAATTGTATATGTATACAC
7953175 ATATTGCCG
1 ATATTGCCG
7953184 GACATAAATT
Statistics
Matches: 272, Mismatches: 57, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
32 247 0.91
34 25 0.09
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (32 bp):
ATATTGCCGAATTGAATTGTATATGTATACAC
Found at i:7953183 original size:64 final size:64
Alignment explanation
Indices: 7952820--7953172 Score: 537
Period size: 64 Copynumber: 5.5 Consensus size: 64
7952810 ATATGTTTTA
* * * *
7952820 TATATTGACGAATTGAATTGTATAGGTATACACCTATTGCTGAATTGAATTATATATATATATAC
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAA-T-TGTATATGTATAC
7952885 T
64 T
* *
7952886 TATATTGCCAAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATATATACT
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
** *
7952950 TATATTGCCGAATTGAATTGTATATATATACACCTATTGCCGAATTAAATTGTATATGTATACT
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
*
7953014 TATATTGCCGGATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
* *
7953078 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGATTTGTATATGTAT-TT
1 TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
* * *
7953141 ATATATTGCTGAATTAAATTGTATATGTATAC
1 -TATATTGCCGAATTGAATTGTATAGGTATAC
7953173 TTATATTGCC
Statistics
Matches: 267, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
63 1 0.00
64 219 0.82
65 1 0.00
66 46 0.17
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (64 bp):
TATATTGCCGAATTGAATTGTATAGGTATACACCTATTGCCGAATTGAATTGTATATGTATACT
Found at i:7954384 original size:14 final size:14
Alignment explanation
Indices: 7954367--7954393 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7954357 AGTAAAACGT
7954367 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
7954381 TTTCTGGAAAATG
1 TTTCTGGAAAATG
7954394 TTTTACTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:7957012 original size:25 final size:25
Alignment explanation
Indices: 7956982--7957031 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
7956972 GGAAGAGAAG
*
7956982 ATGAAGAACGGAAGAAGGAAAAGGA
1 ATGAAGAACGAAAGAAGGAAAAGGA
*
7957007 ATGAAGAACGAAAGAAGGAGAAGGA
1 ATGAAGAACGAAAGAAGGAAAAGGA
7957032 GCCTTACCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.56, C:0.04, G:0.36, T:0.04
Consensus pattern (25 bp):
ATGAAGAACGAAAGAAGGAAAAGGA
Found at i:7959794 original size:95 final size:95
Alignment explanation
Indices: 7959664--7959910 Score: 307
Period size: 95 Copynumber: 2.6 Consensus size: 95
7959654 TGGGGAGCGG
* * *
7959664 TAATCTAATTTTATAAAAAATTATAATTAATTTACTCAAGTAACCCTGAACCCTAATTTATTTGA
1 TAATCTAATTTTA-AAAAAATTATAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTGA
* ** * * *
7959729 TTTTTCCTT-AAAACCCCTTAACTCTAAACCC
65 TTTTTCCTTAAAAAACAATAAACACGAAA-CC
*
7959760 TAATCTAATTTTAAAAAAAATATAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTGAT
1 TAATCTAATTTTAAAAAAATTATAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTGAT
*
7959825 TTTTTCTTAAAAAACAATAAACACGAAACC
66 TTTTCCTTAAAAAACAATAAACACGAAACC
* * * ** **
7959855 TAATCCAATTTTAAAAAAATTATAATTAATTTAATTGACAAACCCTAAACCCTAAT
1 TAATCTAATTTTAAAAAAATTATAATTAAATTACTCAAGTAACCCTAAACCCTAAT
7959911 CCCTTATTTA
Statistics
Matches: 131, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
95 105 0.80
96 26 0.20
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (95 bp):
TAATCTAATTTTAAAAAAATTATAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTGAT
TTTTCCTTAAAAAACAATAAACACGAAACC
Found at i:7962128 original size:4 final size:4
Alignment explanation
Indices: 7962121--7962163 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
7962111 CTTTCTTCTC
* *
7962121 TTTA TTTA TTTA TTTA TTTA CTTTC TTTA ATT- TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTT
7962164 TGTTCTGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 2 0.06
4 28 0.85
5 3 0.09
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:7963192 original size:16 final size:17
Alignment explanation
Indices: 7963158--7963195 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
7963148 TGTTGAAGTT
**
7963158 TTTTTTTCTTTTCTTTC
1 TTTTTTTCTTTTCACTC
7963175 TTTTTTT-TTTTCACTC
1 TTTTTTTCTTTTCACTC
7963191 TTTTT
1 TTTTT
7963196 CCTCTTCTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTTCTTTTCACTC
Found at i:7963279 original size:15 final size:14
Alignment explanation
Indices: 7963253--7963282 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7963243 CTGTTCTCTG
7963253 TTTTCTTTTTCTTC
1 TTTTCTTTTTCTTC
7963267 TTTTCTTTCTTCTTC
1 TTTTCTTT-TTCTTC
7963282 T
1 T
7963283 CCTCCCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTCTTTTTCTTC
Found at i:7967119 original size:12 final size:12
Alignment explanation
Indices: 7967102--7967126 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7967092 ATATGTATGT
7967102 GGTTGAGACTGA
1 GGTTGAGACTGA
7967114 GGTTGAGACTGA
1 GGTTGAGACTGA
7967126 G
1 G
7967127 CTTTATAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.44, T:0.24
Consensus pattern (12 bp):
GGTTGAGACTGA
Found at i:7967257 original size:8 final size:8
Alignment explanation
Indices: 7967244--7967274 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
7967234 AATTAAATTT
7967244 TATTTTGA
1 TATTTTGA
*
7967252 TATTTTGG
1 TATTTTGA
7967260 TATTTTGA
1 TATTTTGA
7967268 TATTTTG
1 TATTTTG
7967275 GGTTTGTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (8 bp):
TATTTTGA
Found at i:7967265 original size:16 final size:16
Alignment explanation
Indices: 7967244--7967275 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7967234 AATTAAATTT
7967244 TATTTTGATATTTTGG
1 TATTTTGATATTTTGG
7967260 TATTTTGATATTTTGG
1 TATTTTGATATTTTGG
7967276 GTTTGTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.62
Consensus pattern (16 bp):
TATTTTGATATTTTGG
Found at i:7972023 original size:147 final size:148
Alignment explanation
Indices: 7971733--7972030 Score: 454
Period size: 147 Copynumber: 2.0 Consensus size: 148
7971723 CTTTTAATCC
* * * * *
7971733 CTTAATATTTAAATACCTAAAACAAAGTTTGCTTTTCCCAAGTCCTTCATGCTAATGTGTTGAGT
1 CTTAAGATTCAAATACCTAAAACAAAGTTAGCTTCTCCCAAGTCCTTCATGCTAATGTGTTAAGT
* * *
7971798 TAACCATAATTTAACAGACGACAATGTCTATAAATCATTTCCAATTAGTAGAATGTTATCGACAC
66 TAACCATAATTTAACAGACGACAATATCCATAAATCATTTCCAATGAGTAGAATGTTATCGACAC
7971863 ATAAAACGAGAAAGATCA
131 ATAAAACGAGAAAGATCA
*
7971881 CTTAAGATTCAAATACCTAGAA-AAAGTTAGCTTCTCCCAAGTCCTTCATGCTAATGTGTTAAGT
1 CTTAAGATTCAAATACCTAAAACAAAGTTAGCTTCTCCCAAGTCCTTCATGCTAATGTGTTAAGT
** * * *
7971945 TAACCATAATTTAGTAGATGACAATATCCCTAAATCATTTCCAATGAGTAGAATGTTATTGACAC
66 TAACCATAATTTAACAGACGACAATATCCATAAATCATTTCCAATGAGTAGAATGTTATCGACAC
*
7972010 ATAAAATGAGAAAGATCA
131 ATAAAACGAGAAAGATCA
7972028 CTT
1 CTT
7972031 TTCCGTCCCT
Statistics
Matches: 135, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
147 116 0.86
148 19 0.14
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (148 bp):
CTTAAGATTCAAATACCTAAAACAAAGTTAGCTTCTCCCAAGTCCTTCATGCTAATGTGTTAAGT
TAACCATAATTTAACAGACGACAATATCCATAAATCATTTCCAATGAGTAGAATGTTATCGACAC
ATAAAACGAGAAAGATCA
Found at i:7994611 original size:21 final size:21
Alignment explanation
Indices: 7994586--7994629 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7994576 TAAGTTAACT
7994586 TCCTAATTTTGGTATAACTAC
1 TCCTAATTTTGGTATAACTAC
7994607 TCCTAATTTTGGTATAACTAC
1 TCCTAATTTTGGTATAACTAC
7994628 TC
1 TC
7994630 TTTAACTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.43
Consensus pattern (21 bp):
TCCTAATTTTGGTATAACTAC
Found at i:8005759 original size:50 final size:50
Alignment explanation
Indices: 8005683--8005922 Score: 272
Period size: 50 Copynumber: 4.8 Consensus size: 50
8005673 TTGGGTAAAA
*
8005683 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATAAT
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATAAG
* * * *
8005733 AGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAG
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATAAG
** * *
8005783 AGGTCCCCCGTAAGACCATGTCTGGGACATGGCA-TGAGCACCGAGATGAG
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTG-GCATCGAGATAAG
** * * *
8005833 AGGTCCCCCGTAAGGCCATATCTGGGATATGGCATTGGCAGTAC-AGA-AA-
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-T-CGAGATAAG
** *
8005882 ACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8005923 GTTATTATCA
Statistics
Matches: 164, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 34 0.21
50 123 0.75
51 5 0.03
52 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.22
Consensus pattern (50 bp):
AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATAAG
Found at i:8021834 original size:43 final size:43
Alignment explanation
Indices: 8021770--8021869 Score: 173
Period size: 43 Copynumber: 2.3 Consensus size: 43
8021760 AATAATATTA
8021770 TCCAAATACATAATTAATAGTACACCACATAGTAACAACATTG
1 TCCAAATACATAATTAATAGTACACCACATAGTAACAACATTG
*
8021813 TCCAAATACATAATTAGTAGTACACCACATAGTAACAACATTG
1 TCCAAATACATAATTAATAGTACACCACATAGTAACAACATTG
* *
8021856 TCCAAGTGCATAAT
1 TCCAAATACATAAT
8021870 ATTACACCAC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (43 bp):
TCCAAATACATAATTAATAGTACACCACATAGTAACAACATTG
Found at i:8027199 original size:16 final size:16
Alignment explanation
Indices: 8027167--8027200 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
8027157 TCAATCTCAT
*
8027167 AAAGATATTTTTGAAA
1 AAAGATATTTTAGAAA
8027183 AAAGATA-TTTAGAAA
1 AAAGATATTTTAGAAA
8027198 AAA
1 AAA
8027201 TTTCATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (16 bp):
AAAGATATTTTAGAAA
Found at i:8029350 original size:50 final size:51
Alignment explanation
Indices: 8029296--8029526 Score: 195
Period size: 50 Copynumber: 4.6 Consensus size: 51
8029286 TACACCGCCT
*
8029296 GGGAAGTAATATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-G
1 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCTG
* * * * * * *
8029346 GGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTATTCT-ACTG-AACT-ACTT
1 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCT-TTTTAACTGCAA-TGTCTG
* * *
8029396 GAGAAGTAAGATTCACTGTGGTAGCTTTAATCTTTTTAACTGCAATGTC-G
1 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCTG
* * * * * * ** * *
8029446 GGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCACTGCATTG-CTT
1 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCTG
* *
8029496 GAGAAGTAAGATTTGCTGTTGTAGCTTTAAT
1 GGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
8029527 GCAGGGGAAA
Statistics
Matches: 136, Mismatches: 38, Indels: 14
0.72 0.20 0.07
Matches are distributed among these distances:
49 7 0.05
50 123 0.90
51 6 0.04
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (51 bp):
GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCTG
Found at i:8029354 original size:100 final size:100
Alignment explanation
Indices: 8029220--8029526 Score: 384
Period size: 100 Copynumber: 3.1 Consensus size: 100
8029210 TAACTCGTAA
* * ** * * * * *
8029220 CTTTAATCTATTTAAATGTGATGTCGAGGAAGCAAGATTCGCTGTTGTAGC-TTCAGTTTGTTCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTT-AATCTGTTCC
* * * *
8029284 ACTACACCGCCTGGGAAGTAATATTCGCTGTTGTAG
65 ACTACACTGCTTGAGAAGTAAGATTCGCTGTTGTAG
* *
8029320 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTATTCTA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
* * *
8029385 CTGA-ACTACTTGAGAAGTAAGATTCACTGTGGTAG
66 CT-ACACTGCTTGAGAAGTAAGATTCGCTGTTGTAG
*
8029420 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
* * *
8029485 CTGCATTGCTTGAGAAGTAAGATTTGCTGTTGTAG
66 CTACACTGCTTGAGAAGTAAGATTCGCTGTTGTAG
8029520 CTTTAAT
1 CTTTAAT
8029527 GCAGGGGAAA
Statistics
Matches: 177, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
100 174 0.98
101 3 0.02
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
CTACACTGCTTGAGAAGTAAGATTCGCTGTTGTAG
Found at i:8029588 original size:85 final size:85
Alignment explanation
Indices: 8029445--8029611 Score: 244
Period size: 85 Copynumber: 2.0 Consensus size: 85
8029435 CTGCAATGTC
* * * * ** * *
8029445 GGGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCACTGCATTGCTTGAGAAGTAAGATTT
1 GGGGAAACAAGATTCACCGATGTGGCGTTAATCTGTTCCACTGCACCGCTAGAGAAGTAAGATTC
8029510 GCTGTTGTAGCTTTAATGCA
66 GCTGTTGTAGCTTTAATGCA
* *
8029530 GGGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTC
1 GGGGAAACAAGATTCACCGATGTGGCGTTAATCTGTTCCACTGCACCGCTAGAGAAGTAAGATTC
8029595 GCTGTTGTAGCTTTAAT
66 GCTGTTGTAGCTTTAAT
8029612 CTTTTGAACT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (85 bp):
GGGGAAACAAGATTCACCGATGTGGCGTTAATCTGTTCCACTGCACCGCTAGAGAAGTAAGATTC
GCTGTTGTAGCTTTAATGCA
Found at i:8029592 original size:50 final size:50
Alignment explanation
Indices: 8029538--8029694 Score: 181
Period size: 50 Copynumber: 3.1 Consensus size: 50
8029528 CAGGGGAAAC
8029538 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGT
1 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGT
* * * * * ** ** * *
8029588 AAGATTCGCTGTTGTAGCTTTAATCTTTTGAACTGCAATG-TCGGGAAAGC
1 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGG-AAGT
* *
8029638 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTTGAGAAGT
1 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGT
8029688 AAGATTC
1 AAGATTC
8029695 GCTGTTGTAA
Statistics
Matches: 82, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
49 4 0.05
50 75 0.91
51 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (50 bp):
AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGT
Found at i:8029664 original size:185 final size:185
Alignment explanation
Indices: 8029345--8030074 Score: 874
Period size: 185 Copynumber: 3.9 Consensus size: 185
8029335 CTGCAATGTC
* * * * * * ** * *
8029345 GGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTATTCTACTGAACTACTTGAGAAGTAAGATTC
1 GGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTC
* * * * * *
8029410 ACTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTTA
66 GCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGATGTGGCGTTA
* * *
8029475 ATCTGTTCCACTGCATTGCTTGAGAAGTAAGATTTGCTGTTGTAGCTTTAATGCA
131 ATCTGTTCCACTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATGCA
*
8029530 GGGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTC
1 GGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTC
* *
8029595 GCTGTTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGAAAGCAAGATTCACCGATGTGGCTTTA
66 GCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGATGTGGCGTTA
* * *
8029660 ATCTGTTCCACTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAACTTTAATGTC-
131 ATCTGTTCCACTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATG-CA
*
8029715 GGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAAATTC
1 GGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTC
* * * *
8029780 GCTGCTGTAGCTTTAATCTTTTTAACTACAATGTCGGGAAAGCAAGGTTCGCC-ATTGTGGCGTT
66 GCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGA-TGTGGCGTT
*
8029844 AATCTGTTCCACTGCATCGCCT-AGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTG
130 AATCTGTTCCACTGCATCGCCTGA-GAAGTAAGATTCGCTGTTGTAG-------C--TTTAA-TG
8029908 CAA
184 C-A
* * * * * *
8029911 TGTCATGGAAGCAAGGTTCGCC-ATTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGAAAATAA
1 -G---GGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAA
* * * *
8029975 GATTTGTTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGT
61 GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGATGTGG
* *
8030040 CTTTAATCTGTTCCACTGCATCGCCTGGGAAGTAA
126 CGTTAATCTGTTCCACTGCATCGCCTGAGAAGTAA
8030075 AATTGGTATT
Statistics
Matches: 470, Mismatches: 53, Indels: 29
0.85 0.10 0.05
Matches are distributed among these distances:
184 2 0.00
185 319 0.68
186 1 0.00
192 1 0.00
194 6 0.01
195 2 0.00
197 1 0.00
199 1 0.00
200 136 0.29
201 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (185 bp):
GGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTC
GCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGATGTGGCGTTA
ATCTGTTCCACTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATGCA
Found at i:8029709 original size:50 final size:50
Alignment explanation
Indices: 8029554--8029711 Score: 174
Period size: 50 Copynumber: 3.2 Consensus size: 50
8029544 CACCGATGTG
8029554 GCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTCGCTGTTGTA
1 GCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTCGCTGTTGTA
* ** ** * * * * * *
8029604 GCTTTAATCTTTTGAACTGCAATG-TCGGGAAAGCAAGATTCACCGATGTG
1 GCTTTAATCTGTTCCACTGCACCGCTAGGG-AAGTAAGATTCGCTGTTGTA
* *
8029654 GCTTTAATCTGTTCCACTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTA
1 GCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTCGCTGTTGTA
*
8029704 ACTTTAAT
1 GCTTTAAT
8029712 GTCGGGGAAG
Statistics
Matches: 82, Mismatches: 24, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
49 4 0.05
50 75 0.91
51 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (50 bp):
GCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTCGCTGTTGTA
Found at i:8029710 original size:100 final size:99
Alignment explanation
Indices: 8029531--8030059 Score: 599
Period size: 100 Copynumber: 5.4 Consensus size: 99
8029521 TTTAATGCAG
*
8029531 GGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAGATTCG
1 GGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGAGAAGTAAGATTCG
*
8029596 CTGTTGTAGCTTTAATCTTTTGAACTGCAATGTC
66 CTGTTGTAACTTTAATCTTTTGAACTGCAATGTC
*
8029630 GGGAAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTTGAGAAGTAAGATTC
1 GGGAAA-CAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGAGAAGTAAGATTC
8029695 GCTGTTGTAACTTTAA-----TG---T-C---G--
65 GCTGTTGTAACTTTAATCTTTTGAACTGCAATGTC
* * *
8029716 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTAAAATTCG
1 GGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGAGAAGTAAGATTCG
* * * *
8029781 CTGCTGTAGCTTTAATCTTTTTAACTACAATGTC
66 CTGTTGTAACTTTAATCTTTTGAACTGCAATGTC
* * * * *
8029815 GGGAAAGCAAGGTTCGCC-ATTGTGGCGTTAATCTGTTCCACTGCATCGCCTAG-GGAGTAAGAT
1 GGGAAA-CAAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGCACCG-CTAGAGAAGTAAGAT
* *
8029878 TCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC
63 TCGCTGTTGTAACTTTAATCTTTTGAACTGCAATGTC
* * * * * *
8029915 ATGGAAGCAAGGTTCGCC-ATTGTGGCTTTAATCTGTTCCACTGCACCGCCAG-GAAAATAAGAT
1 -GGGAAACAAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGCACCGCTAGAG-AAGTAAGAT
* * * *
8029978 TTGTTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC
63 TCGCTGTTGTAACTTTAATCTTTTGAACTGCAATGTC
* *
8030015 GGGGAAGCAAGATTCACCGATGTGTCTTTAATCTGTTCCACTGCA
1 -GGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA
8030060 TCGCCTGGGA
Statistics
Matches: 376, Mismatches: 33, Indels: 41
0.84 0.07 0.09
Matches are distributed among these distances:
85 69 0.18
86 5 0.01
88 1 0.00
90 1 0.00
91 1 0.00
92 1 0.00
93 1 0.00
94 1 0.00
95 2 0.01
97 1 0.00
99 16 0.04
100 268 0.71
101 9 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (99 bp):
GGGAAACAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGAGAAGTAAGATTCG
CTGTTGTAACTTTAATCTTTTGAACTGCAATGTC
Found at i:8029772 original size:85 final size:85
Alignment explanation
Indices: 8029624--8029796 Score: 292
Period size: 85 Copynumber: 2.0 Consensus size: 85
8029614 TTTGAACTGC
*
8029624 AATGTCGGGAAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTTGAGAAGTA
1 AATGTCGGGAAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGAGAAGTA
* *
8029689 AGATTCGCTGTTGTAACTTT
66 AAATTCGCTGCTGTAACTTT
* *
8029709 AATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAGTA
1 AATGTCGGGAAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGAGAAGTA
*
8029774 AAATTCGCTGCTGTAGCTTT
66 AAATTCGCTGCTGTAACTTT
8029794 AAT
1 AAT
8029797 CTTTTTAACT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (85 bp):
AATGTCGGGAAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTAGAGAAGTA
AAATTCGCTGCTGTAACTTT
Found at i:8029793 original size:50 final size:50
Alignment explanation
Indices: 8029716--8030074 Score: 208
Period size: 50 Copynumber: 7.2 Consensus size: 50
8029706 TTTAATGTCG
* * * * *
8029716 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCTA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAACGCTA
* * * * ** * * *
8029766 GGGAAGTAAAATTCGCTGCTGTAGCTTTAATCTTTTTAACTACAATG-TC
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAACGCTA
* * * * * *
8029815 GGGAAAGCAAGGTTCGCCATTGTGGCGTTAATCTGTTCCACTGCATCGCCTA
1 GGG-AAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAACG-CTA
* * ** *
8029867 GGG-AGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATG-TCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAACGCT-A
* * * * * * *
8029916 TGGAAGCAAGGTTCGCCATTGTGGCTTTAATCTGTTCCACTGCACCGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAACGCTA
* * * ** * ** * *
8029966 GGAAAATAAGATTTGTTGTTGTAGCTTTAATCTTTTTAACTGCAATG-TCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAACGCT-A
* * * *
8030016 GGGAAGCAAGATTCACCGATGT-GTCTTTAATCTGTTCCACTGCATCGCCT-
1 GGGAAGTAAGATTCGCCGTTGTAG-CTTTAATCTGTTCCACTGCAACG-CTA
8030066 GGGAAGTAA
1 GGGAAGTAA
8030075 AATTGGTATT
Statistics
Matches: 217, Mismatches: 82, Indels: 20
0.68 0.26 0.06
Matches are distributed among these distances:
48 1 0.00
49 8 0.04
50 203 0.94
52 5 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAACGCTA
Found at i:8033758 original size:21 final size:22
Alignment explanation
Indices: 8033724--8033768 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
8033714 CTTTAAAACA
* * *
8033724 TTTATTTTTTATTTTTTAA-AT
1 TTTATATTTAATTTTATAATAT
8033745 TTTATATTTAATTTTATAATAT
1 TTTATATTTAATTTTATAATAT
8033767 TT
1 TT
8033769 ATTTATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTATATTTAATTTTATAATAT
Found at i:8034581 original size:29 final size:30
Alignment explanation
Indices: 8034522--8034581 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
8034512 CAAGTTTTAG
* *
8034522 GAGCCACACGGGCTGGACACATGGTCGTGT
1 GAGCCACACGAGCTGGACACATGGTCATGT
*
8034552 GAGCCACACGAGCT-GCCACATGGTCATGT
1 GAGCCACACGAGCTGGACACATGGTCATGT
8034581 G
1 G
8034582 CCAGACCGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.22, C:0.28, G:0.33, T:0.17
Consensus pattern (30 bp):
GAGCCACACGAGCTGGACACATGGTCATGT
Found at i:8036202 original size:25 final size:24
Alignment explanation
Indices: 8036166--8036214 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
8036156 TTTGTAATTT
*
8036166 TCCCAAATTGTATACCTTGTTTTACA
1 TCCCAAATTGTACA-CTT-TTTTACA
8036192 TCCCAAA-TGTACACTTTTTTACA
1 TCCCAAATTGTACACTTTTTTACA
8036215 ATTTATGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 3 0.14
25 5 0.23
26 7 0.32
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (24 bp):
TCCCAAATTGTACACTTTTTTACA
Found at i:8042747 original size:3 final size:3
Alignment explanation
Indices: 8042741--8042776 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
8042731 GAGAGAAAGG
*
8042741 AGA AGA AG- AGA AGG AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
8042777 AGAAAGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:8042961 original size:19 final size:19
Alignment explanation
Indices: 8042939--8042999 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
8042929 TATAGTTTAG
8042939 ATTAGAATTTTGTATGAAT
1 ATTAGAATTTTGTATGAAT
* *
8042958 ATTATAATGTTTTTATGAAT
1 ATTAGAAT-TTTGTATGAAT
*
8042978 ATT-GTAATGTTGTATGAAT
1 ATTAG-AATTTTGTATGAAT
8042997 ATT
1 ATT
8043000 GTAATTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 19 0.54
20 16 0.46
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (19 bp):
ATTAGAATTTTGTATGAAT
Found at i:8042976 original size:20 final size:20
Alignment explanation
Indices: 8042946--8043004 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 20
8042936 TAGATTAGAA
*
8042946 TTTTGTATGAATATTATAATG
1 TTTT-TATGAATATTGTAATG
8042967 TTTTTATGAATATTGTAATG
1 TTTTTATGAATATTGTAATG
*
8042987 -TTGTATGAATATTGTAAT
1 TTTTTATGAATATTGTAAT
8043005 TATTTTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 17 0.47
20 15 0.42
21 4 0.11
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (20 bp):
TTTTTATGAATATTGTAATG
Found at i:8043000 original size:19 final size:20
Alignment explanation
Indices: 8042947--8043004 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
8042937 AGATTAGAAT
*
8042947 TTTGTATGAATATTATAATG
1 TTTGTATGAATATTGTAATG
*
8042967 TTTTTATGAATATTGTAATG
1 TTTGTATGAATATTGTAATG
8042987 -TTGTATGAATATTGTAAT
1 TTTGTATGAATATTGTAAT
8043005 TATTTTATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.52
Consensus pattern (20 bp):
TTTGTATGAATATTGTAATG
Found at i:8050673 original size:14 final size:14
Alignment explanation
Indices: 8050651--8050687 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 14
8050641 GAAAAAAAAG
8050651 AGAGAAAGGAGAAGA
1 AGAG-AAGGAGAAGA
8050666 AGAGAAGGAGAAGA
1 AGAGAAGGAGAAGA
8050680 AGAAGAAG
1 AG-AGAAG
8050688 AAAGAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
AGAGAAGGAGAAGA
Found at i:8050696 original size:17 final size:17
Alignment explanation
Indices: 8050648--8050697 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 17
8050638 AGAGAAAAAA
* *
8050648 AAGAGAGAAAGGAGAAG
1 AAGAAAGAAAGAAGAAG
8050665 AAGAGAAGGAGAAGAAGAAG
1 AAGA-AA-GA-AAGAAGAAG
8050685 AAGAAAGAAAGAA
1 AAGAAAGAAAGAA
8050698 AAAAGGTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 9 0.32
18 3 0.11
19 4 0.14
20 12 0.43
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (17 bp):
AAGAAAGAAAGAAGAAG
Found at i:8050782 original size:12 final size:12
Alignment explanation
Indices: 8050765--8050790 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8050755 TTTGTGAATT
8050765 TTTTAGAAGATA
1 TTTTAGAAGATA
8050777 TTTTAGAAGATA
1 TTTTAGAAGATA
8050789 TT
1 TT
8050791 GTGAATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TTTTAGAAGATA
Found at i:8050906 original size:22 final size:22
Alignment explanation
Indices: 8050859--8050927 Score: 113
Period size: 22 Copynumber: 3.2 Consensus size: 22
8050849 TGGATTAGAA
*
8050859 TTTTGTATGAATATTCTAA-TT
1 TTTTGTATGAATATTGTAATTT
8050880 TTTTGTATGAATATTGTAATTT
1 TTTTGTATGAATATTGTAATTT
*
8050902 TTTTGTATGAATATTGTAATTA
1 TTTTGTATGAATATTGTAATTT
8050924 TTTT
1 TTTT
8050928 ATAATTAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
21 18 0.40
22 27 0.60
ACGTcount: A:0.28, C:0.01, G:0.12, T:0.59
Consensus pattern (22 bp):
TTTTGTATGAATATTGTAATTT
Found at i:8050986 original size:60 final size:60
Alignment explanation
Indices: 8050915--8051036 Score: 165
Period size: 60 Copynumber: 2.0 Consensus size: 60
8050905 TGTATGAATA
* * * * * *
8050915 TTGTAATTATTTTATAA-TTAATTTGTTAGTAATTTGGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
*
8050975 TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAGTTGTTGTGT
1 TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
8051035 TT
1 TT
8051037 AGTTTAGTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 6 0.11
60 48 0.89
ACGTcount: A:0.30, C:0.01, G:0.15, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:8051115 original size:38 final size:38
Alignment explanation
Indices: 8051070--8051151 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
8051060 CATATAAAGT
8051070 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
*
8051108 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
8051146 TTATAA
1 TTATAA
8051152 CTGACTTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
Found at i:8053242 original size:27 final size:27
Alignment explanation
Indices: 8053211--8053269 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
8053201 GTAATGATTC
8053211 TTTTTATGTAAATAAAATTATAATGGT
1 TTTTTATGTAAATAAAATTATAATGGT
*
8053238 TTTTTATGTAAATAAAATTATAATGTT
1 TTTTTATGTAAATAAAATTATAATGGT
8053265 TTTTT
1 TTTTT
8053270 TATTTTACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.54
Consensus pattern (27 bp):
TTTTTATGTAAATAAAATTATAATGGT
Found at i:8056262 original size:22 final size:23
Alignment explanation
Indices: 8056237--8056290 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
8056227 ATACCTTATT
8056237 TTTTTCTTCTT-TTCCTTCCTTC
1 TTTTTCTTCTTCTTCCTTCCTTC
*
8056259 -TTTTCTT-TTGCTTCCTTCTTTC
1 TTTTTCTTCTT-CTTCCTTCCTTC
8056281 TTATTTCTTC
1 TT-TTTCTTC
8056291 CGTTTCTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 2 0.08
21 7 0.27
22 10 0.38
23 1 0.04
24 6 0.23
ACGTcount: A:0.02, C:0.28, G:0.02, T:0.69
Consensus pattern (23 bp):
TTTTTCTTCTTCTTCCTTCCTTC
Found at i:8056291 original size:18 final size:18
Alignment explanation
Indices: 8056243--8056279 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8056233 TATTTTTTTC
*
8056243 TTCTTTTCCTTCCTTCTT
1 TTCTTTTGCTTCCTTCTT
8056261 TTCTTTTGCTTCCTTCTT
1 TTCTTTTGCTTCCTTCTT
8056279 T
1 T
8056280 CTTATTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.30, G:0.03, T:0.68
Consensus pattern (18 bp):
TTCTTTTGCTTCCTTCTT
Found at i:8061685 original size:10 final size:10
Alignment explanation
Indices: 8061664--8061749 Score: 54
Period size: 10 Copynumber: 8.6 Consensus size: 10
8061654 AAGTGGTTTC
8061664 TTAAACAATTA
1 TTAAA-AATTA
8061675 TTAAAAATTA
1 TTAAAAATTA
8061685 -TAGAAAAGTTA
1 TTA-AAAA-TTA
* *
8061696 TTTAAAAGTAA
1 -TTAAAAATTA
8061707 TTAAAAATTA
1 TTAAAAATTA
**
8061717 TTTGAAATTA
1 TTAAAAATTA
*
8061727 -TAAATATT-
1 TTAAAAATTA
*
8061735 TT-AAAATTT
1 TTAAAAATTA
8061744 TTAAAA
1 TTAAAA
8061750 GTTAATAATA
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
8 5 0.09
9 10 0.17
10 28 0.48
11 10 0.17
12 3 0.05
13 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.05, T:0.41
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:8062193 original size:22 final size:22
Alignment explanation
Indices: 8062165--8062209 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
8062155 AGTAGACTAA
8062165 GGGCCATTTTGATTGGTGGTGC
1 GGGCCATTTTGATTGGTGGTGC
8062187 GGGCCATTTTGATTGGTGGTGC
1 GGGCCATTTTGATTGGTGGTGC
8062209 G
1 G
8062210 TTTACTTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.13, G:0.42, T:0.36
Consensus pattern (22 bp):
GGGCCATTTTGATTGGTGGTGC
Found at i:8067006 original size:21 final size:20
Alignment explanation
Indices: 8066980--8067025 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
8066970 CTTCTTAAAA
*
8066980 TTTTTAAAATTTATATTTAAT
1 TTTTTAAAATATATATTT-AT
*
8067001 TTTTTATAATATATATTTAT
1 TTTTTAAAATATATATTTAT
8067021 TTTTT
1 TTTTT
8067026 CTCATCAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTAAAATATATATTTAT
Found at i:8068533 original size:27 final size:28
Alignment explanation
Indices: 8068497--8068549 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
8068487 CACATGATAA
*
8068497 AAGGAGATGCCTTTGTGGCAAACTCTGT
1 AAGGAGATGCCTTCGTGGCAAACTCTGT
*
8068525 AAGGA-ATGCCTTCGTGGCATACTCT
1 AAGGAGATGCCTTCGTGGCAAACTCT
8068550 AAAGAATGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (28 bp):
AAGGAGATGCCTTCGTGGCAAACTCTGT
Found at i:8079490 original size:28 final size:27
Alignment explanation
Indices: 8079459--8079526 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
8079449 AGGCCCTATT
* *
8079459 CAATGACAGTACAGTGAGGGCCTTAGCC
1 CAAT-ACAGTACAGTGAGAGCCTTAACC
* *
8079487 CAATTCAGTAGCAGTGTGAGCCTTAACC
1 CAATACAGTA-CAGTGAGAGCCTTAACC
8079515 CAATACAGTACA
1 CAATACAGTACA
8079527 TAAAATGCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 7 0.21
28 27 0.79
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (27 bp):
CAATACAGTACAGTGAGAGCCTTAACC
Found at i:8079937 original size:27 final size:26
Alignment explanation
Indices: 8079907--8080240 Score: 317
Period size: 27 Copynumber: 12.4 Consensus size: 26
8079897 CACACTATGT
* *
8079907 GGGTATTTTGGTAATTTTACCTTTCAG
1 GGGTATTTCGGTAATTTTACCCTTC-G
* * *
8079934 GGGTATTTCGATACTTTTACCCTTCAA
1 GGGTATTTCGGTAATTTTACCCTTC-G
*
8079961 GGGTATTTCAGTAATTTTACCCTTCG
1 GGGTATTTCGGTAATTTTACCCTTCG
* *
8079987 GGTGTATTTCTGTAATTTTACCTTTCG
1 GG-GTATTTCGGTAATTTTACCCTTCG
* * *
8080014 AGAGTATTTCAGTAATTTTACCCTTCAA
1 -GGGTATTTCGGTAATTTTACCCTTC-G
* **
8080042 GGGTATTTCGGTAGTTTTACTGTTCG
1 GGGTATTTCGGTAATTTTACCCTTCG
** * * *
8080068 AGGGTATTTCAATAATTTCACACTATGG
1 -GGGTATTTCGGTAATTTTACCCT-TCG
* *
8080096 GGGTATTTCGATAATTTTACCTTTCGG
1 GGGTATTTCGGTAATTTTACCCTTC-G
*
8080123 GGGTATTTCAGTAATTTTACCCTTCG
1 GGGTATTTCGGTAATTTTACCCTTCG
* *
8080149 GGTGTACTTCGGTAATTTTACCTTTCG
1 GG-GTATTTCGGTAATTTTACCCTTCG
* * *
8080176 AGAGTATTTCAGTAATTTTACCCTTCAA
1 -GGGTATTTCGGTAATTTTACCCTTC-G
8080204 GGGTATTTCGGTAATTTTACCCTTCG
1 GGGTATTTCGGTAATTTTACCCTTCG
8080230 AGGGTATTTCG
1 -GGGTATTTCG
8080241 ATAAATTGCC
Statistics
Matches: 250, Mismatches: 47, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.02
27 240 0.96
28 4 0.02
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTTACCCTTCG
Found at i:8079975 original size:54 final size:54
Alignment explanation
Indices: 8079907--8080239 Score: 413
Period size: 54 Copynumber: 6.2 Consensus size: 54
8079897 CACACTATGT
** * * * * *
8079907 GGGTATTTTGGTAATTTTACCTTTCAGGGGTATTTCGATACTTTTACCCTTCAA
1 GGGTATTTCAGTAATTTTACCCTTCAGGGGTATTTCGGTAATTTTACCTTTCGA
*
8079961 GGGTATTTCAGTAATTTTACCCTTC-GGGTGTATTTCTGTAATTTTACCTTTCGA
1 GGGTATTTCAGTAATTTTACCCTTCAGGG-GTATTTCGGTAATTTTACCTTTCGA
* * *
8080015 GAGTATTTCAGTAATTTTACCCTTCAAGGGTATTTCGGTAGTTTTA-CTGTTCGA
1 GGGTATTTCAGTAATTTTACCCTTCAGGGGTATTTCGGTAATTTTACCT-TTCGA
* * * * * *
8080069 GGGTATTTCAATAATTTCACACTAT-GGGGGTATTTCGATAATTTTACCTTTCGG
1 GGGTATTTCAGTAATTTTACCCT-TCAGGGGTATTTCGGTAATTTTACCTTTCGA
*
8080123 GGGTATTTCAGTAATTTTACCCTTC-GGGTGTACTTCGGTAATTTTACCTTTCGA
1 GGGTATTTCAGTAATTTTACCCTTCAGGG-GTATTTCGGTAATTTTACCTTTCGA
* * *
8080177 GAGTATTTCAGTAATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTCGA
1 GGGTATTTCAGTAATTTTACCCTTCAGGGGTATTTCGGTAATTTTACCTTTCGA
8080231 GGGTATTTC
1 GGGTATTTC
8080240 GATAAATTGC
Statistics
Matches: 239, Mismatches: 32, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
53 9 0.04
54 223 0.93
55 7 0.03
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.43
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACCCTTCAGGGGTATTTCGGTAATTTTACCTTTCGA
Found at i:8084510 original size:10 final size:9
Alignment explanation
Indices: 8084487--8084516 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
8084477 CCACCCCTTC
8084487 TTTTTTATT
1 TTTTTTATT
8084496 TTTTTTATT
1 TTTTTTATT
8084505 TATTTTTATT
1 T-TTTTTATT
8084515 TT
1 TT
8084517 ACTAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTATT
Found at i:8085627 original size:11 final size:10
Alignment explanation
Indices: 8085605--8085651 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
8085595 CTATTATTGT
8085605 AAAAAAA-GA
1 AAAAAAATGA
*
8085614 AAAAAATTGA
1 AAAAAAATGA
*
8085624 AAAATAA-GA
1 AAAAAAATGA
8085633 AAAAAAATCGA
1 AAAAAAAT-GA
8085644 AAAAAAAT
1 AAAAAAAT
8085652 ATTGATTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 14 0.45
10 7 0.23
11 10 0.32
ACGTcount: A:0.79, C:0.02, G:0.09, T:0.11
Consensus pattern (10 bp):
AAAAAAATGA
Found at i:8085627 original size:19 final size:20
Alignment explanation
Indices: 8085600--8085650 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
8085590 ATTATCTATT
*
8085600 ATTGTAAAAAAAG-AAAAAA
1 ATTGAAAAAAAAGAAAAAAA
*
8085619 ATTGAAAAATAAGAAAAAAA
1 ATTGAAAAAAAAGAAAAAAA
*
8085639 ATCGAAAAAAAA
1 ATTGAAAAAAAA
8085651 TATTGATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.14
Consensus pattern (20 bp):
ATTGAAAAAAAAGAAAAAAA
Found at i:8092817 original size:23 final size:24
Alignment explanation
Indices: 8092783--8092840 Score: 84
Period size: 23 Copynumber: 2.5 Consensus size: 24
8092773 GTCGAAAATG
8092783 ATGCATACATACCAGCT-CAAACAC
1 ATGCATACATACCAGCTAC-AACAC
*
8092807 ATG-ATACATACCAGCTACAGCAC
1 ATGCATACATACCAGCTACAACAC
8092830 ATGCATACATA
1 ATGCATACATA
8092841 ATAGAATGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 20 0.65
24 11 0.35
ACGTcount: A:0.41, C:0.29, G:0.10, T:0.19
Consensus pattern (24 bp):
ATGCATACATACCAGCTACAACAC
Found at i:8095927 original size:2 final size:2
Alignment explanation
Indices: 8095920--8095951 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8095910 TACTAGAACT
8095920 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8095952 AAACTTAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8096054 original size:85 final size:85
Alignment explanation
Indices: 8095965--8096124 Score: 320
Period size: 85 Copynumber: 1.9 Consensus size: 85
8095955 CTTAACCATG
8095965 ACTAAAATGAGAACTTTTAAATAGTTCATTGACTAGTTTGTAACTTTTTGAAGTTGAGTAACCAA
1 ACTAAAATGAGAACTTTTAAATAGTTCATTGACTAGTTTGTAACTTTTTGAAGTTGAGTAACCAA
8096030 AATATAAATTAACTTAATCA
66 AATATAAATTAACTTAATCA
8096050 ACTAAAATGAGAACTTTTAAATAGTTCATTGACTAGTTTGTAACTTTTTGAAGTTGAGTAACCAA
1 ACTAAAATGAGAACTTTTAAATAGTTCATTGACTAGTTTGTAACTTTTTGAAGTTGAGTAACCAA
8096115 AATATAAATT
66 AATATAAATT
8096125 TACTAATAGT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 75 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (85 bp):
ACTAAAATGAGAACTTTTAAATAGTTCATTGACTAGTTTGTAACTTTTTGAAGTTGAGTAACCAA
AATATAAATTAACTTAATCA
Found at i:8101199 original size:4 final size:4
Alignment explanation
Indices: 8101184--8101221 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
8101174 AAACATCATA
8101184 AATT AATT --TT AATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT AATT
8101222 TTCCAATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
4 30 0.94
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (4 bp):
AATT
Found at i:8101229 original size:16 final size:14
Alignment explanation
Indices: 8101184--8101239 Score: 67
Period size: 16 Copynumber: 3.7 Consensus size: 14
8101174 AAACATCATA
8101184 AATTAATTTTAATT
1 AATTAATTTTAATT
8101198 AATTAATTAATTAATT
1 AATTAATT--TTAATT
8101214 AATTAATTTTCCAATT
1 AATTAATTTT--AATT
*
8101230 AAATAATTTT
1 AATTAATTTT
8101240 CTCAACCCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
14 10 0.27
16 27 0.73
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
AATTAATTTTAATT
Found at i:8103164 original size:18 final size:18
Alignment explanation
Indices: 8103143--8103177 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8103133 AAAAATCATA
8103143 AATAATTTAAAATATTTC
1 AATAATTTAAAATATTTC
*
8103161 AATAGTTTAAAATATTT
1 AATAATTTAAAATATTT
8103178 GTAAACTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (18 bp):
AATAATTTAAAATATTTC
Done.