Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 43 of 75
Found at i:13745820 original size:25 final size:25
Alignment explanation
Indices: 13745792--13745855 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
13745782 TACTCTCTCG
* **
13745792 AGTCATATAACAGGATGCTTATGTA
1 AGTCATATAACAGGAAGCTTATCCA
* *
13745817 AGTCATGTAACACGAAGCTTATCCA
1 AGTCATATAACAGGAAGCTTATCCA
13745842 AG--ATATAACAGGAA
1 AGTCATATAACAGGAA
13745856 ACTCATAATA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
23 10 0.31
25 22 0.69
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.25
Consensus pattern (25 bp):
AGTCATATAACAGGAAGCTTATCCA
Found at i:13753968 original size:21 final size:21
Alignment explanation
Indices: 13753926--13753968 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
13753916 ATCATTAATT
*
13753926 AAAAATAATAAAATATTTTTA
1 AAAAATAATAAAATATTGTTA
13753947 AAAAATAATAAAA-ATGTGTTA
1 AAAAATAATAAAATAT-TGTTA
13753968 A
1 A
13753969 TATCTAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAAATAATAAAATATTGTTA
Found at i:13763002 original size:6 final size:6
Alignment explanation
Indices: 13762988--13763017 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
13762978 TTAAAAATAT
*
13762988 TTTTTA TTTTAA TTTTAA TTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
13763018 AAAATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:13767085 original size:17 final size:17
Alignment explanation
Indices: 13767060--13767092 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13767050 GTAAAATATT
*
13767060 AAAATATAAATATTAAA
1 AAAAGATAAATATTAAA
13767077 AAAAGATAAATATTAA
1 AAAAGATAAATATTAA
13767093 TGTTTCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (17 bp):
AAAAGATAAATATTAAA
Found at i:13790539 original size:21 final size:21
Alignment explanation
Indices: 13790507--13790573 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 21
13790497 TAAATAAATT
*
13790507 AATTGAACTGACGGTTAAACT-
1 AATTGAATTGAC-GTTAAACTC
* * *
13790528 AATTAAATTGAC-TAAAAATC
1 AATTGAATTGACGTTAAACTC
*
13790548 AATTGAATTGACGATTAAACTG
1 AATTGAATTGACG-TTAAACTC
13790570 AATT
1 AATT
13790574 TTTTTATAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
19 5 0.14
20 11 0.31
21 10 0.29
22 9 0.26
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.31
Consensus pattern (21 bp):
AATTGAATTGACGTTAAACTC
Found at i:13790933 original size:9 final size:9
Alignment explanation
Indices: 13790910--13790941 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
13790900 TATTTTAGAC
13790910 AATTTTTAA
1 AATTTTTAA
13790919 AA--TTTAA
1 AATTTTTAA
13790926 AATTTTTAA
1 AATTTTTAA
13790935 AATTTTT
1 AATTTTT
13790942 TTGAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
AATTTTTAA
Found at i:13793891 original size:8 final size:8
Alignment explanation
Indices: 13793878--13793923 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
13793868 GTAGAATCGG
13793878 GAGTCGCC
1 GAGTCGCC
*
13793886 GAGTCGCTA
1 GAGTCGC-C
*
13793895 GAGTCACC
1 GAGTCGCC
13793903 GAGTCGCC
1 GAGTCGCC
13793911 GGAGTCGCC
1 -GAGTCGCC
13793920 GAGT
1 GAGT
13793924 ACCAGGTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 18 0.56
9 14 0.44
ACGTcount: A:0.17, C:0.30, G:0.37, T:0.15
Consensus pattern (8 bp):
GAGTCGCC
Found at i:13793904 original size:17 final size:17
Alignment explanation
Indices: 13793878--13793923 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
13793868 GTAGAATCGG
*
13793878 GAGTCGCCGAGTCGCTA
1 GAGTCGCCGAGTCGCCA
* *
13793895 GAGTCACCGAGTCGCCG
1 GAGTCGCCGAGTCGCCA
13793912 GAGTCGCCGAGT
1 GAGTCGCCGAGT
13793924 ACCAGGTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.17, C:0.30, G:0.37, T:0.15
Consensus pattern (17 bp):
GAGTCGCCGAGTCGCCA
Found at i:13794348 original size:25 final size:25
Alignment explanation
Indices: 13794319--13794370 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
13794309 ATTTATTACT
13794319 TACAAATTTCTTTACACATCCAGTG
1 TACAAATTTCTTTACACATCCAGTG
13794344 TACAAATTTCTTTACACATCCAGTG
1 TACAAATTTCTTTACACATCCAGTG
13794369 TA
1 TA
13794371 AGTAAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (25 bp):
TACAAATTTCTTTACACATCCAGTG
Found at i:13794420 original size:19 final size:15
Alignment explanation
Indices: 13794376--13794426 Score: 93
Period size: 15 Copynumber: 3.4 Consensus size: 15
13794366 GTGTAAGTAA
13794376 AAATTTATTACTTAC
1 AAATTTATTACTTAC
13794391 AAATTTATTACTTAC
1 AAATTTATTACTTAC
*
13794406 AAATTTATTATTTAC
1 AAATTTATTACTTAC
13794421 AAATTT
1 AAATTT
13794427 CTTTACACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATTTATTACTTAC
Found at i:13794636 original size:17 final size:17
Alignment explanation
Indices: 13794616--13794657 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
13794606 TTTTACTAAT
13794616 ATTATAATTTTTTCATC
1 ATTATAATTTTTTCATC
13794633 ATTATAATTTTTTCATC
1 ATTATAATTTTTTCATC
13794650 ATTATAAT
1 ATTATAAT
13794658 ATCAAGGCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTATAATTTTTTCATC
Found at i:13797551 original size:9 final size:9
Alignment explanation
Indices: 13797533--13797593 Score: 86
Period size: 9 Copynumber: 6.6 Consensus size: 9
13797523 NNNNNNNNNN
13797533 TAATTCGGG
1 TAATTCGGG
*
13797542 TAATTTGGG
1 TAATTCGGG
13797551 TAATTTTCGGG
1 TAA--TTCGGG
13797562 TAATTCGGG
1 TAATTCGGG
13797571 TAATTCGGG
1 TAATTCGGG
*
13797580 TAAGTCGGG
1 TAATTCGGG
13797589 TAATT
1 TAATT
13797594 TTTAACCAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
9 38 0.83
11 8 0.17
ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38
Consensus pattern (9 bp):
TAATTCGGG
Found at i:13797561 original size:20 final size:20
Alignment explanation
Indices: 13797536--13797595 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
13797526 NNNNNNNTAA
*
13797536 TTCGGGTAATTTGGGTAATT
1 TTCGGGTAATTCGGGTAATT
13797556 TTCGGGTAATTCGGGTAA--
1 TTCGGGTAATTCGGGTAATT
*
13797574 TTCGGGTAAGTCGGGTAATT
1 TTCGGGTAATTCGGGTAATT
13797594 TT
1 TT
13797596 TAACCAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.47
20 19 0.53
ACGTcount: A:0.20, C:0.08, G:0.32, T:0.40
Consensus pattern (20 bp):
TTCGGGTAATTCGGGTAATT
Found at i:13799252 original size:18 final size:18
Alignment explanation
Indices: 13799229--13799268 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
13799219 TTATTATTTT
*
13799229 TAAAATTT-ACTATTAAAA
1 TAAAATTTAAATATT-AAA
13799247 TAAAATTTAAATATTAAA
1 TAAAATTTAAATATTAAA
13799265 TAAA
1 TAAA
13799269 TTATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAATTTAAATATTAAA
Found at i:13799275 original size:19 final size:19
Alignment explanation
Indices: 13799239--13799289 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 19
13799229 TAAAATTTAC
*
13799239 TATTAAAATAAAAT-TTAAA
1 TATT-AAATAAATTATTAAA
13799258 TATTAAATAAATTATTAAA
1 TATTAAATAAATTATTAAA
*
13799277 -AAT-AATAAATTAT
1 TATTAAATAAATTAT
13799290 ATTAATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 10 0.34
19 9 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TATTAAATAAATTATTAAA
Found at i:13800206 original size:21 final size:20
Alignment explanation
Indices: 13800178--13800216 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
13800168 ATTCATGCTA
13800178 TATTATAAAAATAATATATT
1 TATTATAAAAATAATATATT
*
13800198 TATTCATAAAAATATTATA
1 TATT-ATAAAAATAATATA
13800217 GTTTTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
TATTATAAAAATAATATATT
Found at i:13805013 original size:14 final size:16
Alignment explanation
Indices: 13804987--13805020 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
13804977 ATTGTTTGGA
13804987 TATTGTATAATTTT-T
1 TATTGTATAATTTTGT
13805002 TATTGT-TAATTTTGT
1 TATTGTATAATTTTGT
13805017 TATT
1 TATT
13805021 ATTTTAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (16 bp):
TATTGTATAATTTTGT
Found at i:13807535 original size:30 final size:30
Alignment explanation
Indices: 13807501--13807562 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
13807491 AAATTGAGAA
13807501 AAAAAAAAAAAGAAAAGAAAGAAACAATTT
1 AAAAAAAAAAAGAAAAGAAAGAAACAATTT
*
13807531 AAAAAAAAAAAGAAGAGAAAGAAACAATTT
1 AAAAAAAAAAAGAAAAGAAAGAAACAATTT
13807561 AA
1 AA
13807563 TATTTTGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.76, C:0.03, G:0.11, T:0.10
Consensus pattern (30 bp):
AAAAAAAAAAAGAAAAGAAAGAAACAATTT
Found at i:13808406 original size:20 final size:21
Alignment explanation
Indices: 13808380--13808425 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
13808370 AGCCGGGATC
13808380 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
*
13808401 -CTAACTAATACTAATTTAAT
1 ACTAACTAATACTAATCTAAT
13808421 ACTAA
1 ACTAA
13808426 TAGAATAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:13808422 original size:11 final size:11
Alignment explanation
Indices: 13808380--13808426 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
13808370 AGCCGGGATC
13808380 ACTAA-CTAAT
1 ACTAATCTAAT
13808390 ACTAATCTAAT
1 ACTAATCTAAT
13808401 -CTAA-CTAAT
1 ACTAATCTAAT
*
13808410 ACTAATTTAAT
1 ACTAATCTAAT
13808421 ACTAAT
1 ACTAAT
13808427 AGAATAGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.39
11 15 0.45
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:13808442 original size:27 final size:27
Alignment explanation
Indices: 13808407--13808462 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
13808397 TAATCTAACT
*
13808407 AATACTAATTTAATACTAATAGAATAG
1 AATACTAATCTAATACTAATAGAATAG
* *
13808434 AATATTAATCTAATACTAATATAATAG
1 AATACTAATCTAATACTAATAGAATAG
13808461 AA
1 AA
13808463 AAAAAGAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.34
Consensus pattern (27 bp):
AATACTAATCTAATACTAATAGAATAG
Found at i:13808448 original size:11 final size:11
Alignment explanation
Indices: 13808386--13808459 Score: 50
Period size: 11 Copynumber: 7.0 Consensus size: 11
13808376 GATCACTAAC
*
13808386 TAATACTAATC
1 TAATACTAATA
*
13808397 TAAT-CTAA-C
1 TAATACTAATA
*
13808406 TAATACTAATT
1 TAATACTAATA
13808417 TAATACTAATA
1 TAATACTAATA
* *
13808428 GAATA-GAATA
1 TAATACTAATA
13808438 TTAAT-CTAATA
1 -TAATACTAATA
13808449 CTAATA-TAATA
1 -TAATACTAATA
13808460 GAAAAAAAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
9 5 0.10
10 12 0.24
11 34 0.67
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.36
Consensus pattern (11 bp):
TAATACTAATA
Found at i:13809125 original size:14 final size:16
Alignment explanation
Indices: 13809086--13809120 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
13809076 TTTAATGTGT
*
13809086 TATAAATTACATAATA
1 TATAAAATACATAATA
13809102 TATAAAAATACATAATA
1 TAT-AAAATACATAATA
13809119 TA
1 TA
13809121 AAATATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (16 bp):
TATAAAATACATAATA
Found at i:13811738 original size:20 final size:20
Alignment explanation
Indices: 13811700--13811756 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
13811690 GATGCACCCG
* *
13811700 ATTGCACTCTGGTGTCCCTA
1 ATTGCACTTTGGTGCCCCTA
* *
13811720 ATTGCACTTTCGTGCCCCTG
1 ATTGCACTTTGGTGCCCCTA
*
13811740 TTTGCACTTTGGTGCCC
1 ATTGCACTTTGGTGCCC
13811757 ATATATGAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.11, C:0.32, G:0.21, T:0.37
Consensus pattern (20 bp):
ATTGCACTTTGGTGCCCCTA
Found at i:13813760 original size:25 final size:25
Alignment explanation
Indices: 13813701--13813764 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 25
13813691 CACACCACAA
*
13813701 CTCGTATGAGCTTA-TCGATTTTAG
1 CTCGTATGAGCTTACTCGATTTCAG
13813725 CTCGTGA-GAGCTTACT-GATTTACAG
1 CTCGT-ATGAGCTTACTCGATTT-CAG
13813750 CTCGTATGAGCTTAC
1 CTCGTATGAGCTTAC
13813765 AAATATTCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
24 18 0.51
25 17 0.49
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (25 bp):
CTCGTATGAGCTTACTCGATTTCAG
Found at i:13813775 original size:25 final size:23
Alignment explanation
Indices: 13813701--13813789 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 23
13813691 CACACCACAA
*
13813701 CTCGTATGAGCTTATCGATTTTAG
1 CTCGTATGAGCTTA-CGATTTCAG
13813725 CTCGTGA-GAGCTTACTGATTTACAG
1 CTCGT-ATGAGCTTAC-GATTT-CAG
*
13813750 CTCGTATGAGCTTACAAATATTCAG
1 CTCGTATGAGCTTAC-GAT-TTCAG
* *
13813775 CTCGAAGGAGCTTAC
1 CTCGTATGAGCTTAC
13813790 CGTTTATTAG
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
23 1 0.02
24 18 0.33
25 34 0.62
26 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (23 bp):
CTCGTATGAGCTTACGATTTCAG
Found at i:13813940 original size:9 final size:9
Alignment explanation
Indices: 13813923--13813959 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
13813913 TGAGTTTTCG
13813923 AATTCGAAT
1 AATTCGAAT
*
13813932 AACTCGAAT
1 AATTCGAAT
13813941 AATTCGAAT
1 AATTCGAAT
13813950 AATTCGAAT
1 AATTCGAAT
13813959 A
1 A
13813960 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13816046 original size:612 final size:612
Alignment explanation
Indices: 13814883--13816108 Score: 2452
Period size: 612 Copynumber: 2.0 Consensus size: 612
13814873 TTATTACGAG
13814883 ATCACACAAGTTCAATATGAACTAGTACAGGTATTTACATGGGAATGGTTTATATATGATATACG
1 ATCACACAAGTTCAATATGAACTAGTACAGGTATTTACATGGGAATGGTTTATATATGATATACG
13814948 GATACACAGTGAACTTGTTATAAGCGGATTTATTGAAGTGATTCATCAACGGTGGCGTGTCACAA
66 GATACACAGTGAACTTGTTATAAGCGGATTTATTGAAGTGATTCATCAACGGTGGCGTGTCACAA
13815013 TTCCCTTTTCTTTTTGACTCTACGCCAATAATTCCACTATTATTAGTGAACAATAATGGAAAAAT
131 TTCCCTTTTCTTTTTGACTCTACGCCAATAATTCCACTATTATTAGTGAACAATAATGGAAAAAT
13815078 TAAATTCCTTCATATTTGTTTCATATTCATAGAGATAGGGGACATAATACACATGGATATAGTAA
196 TAAATTCCTTCATATTTGTTTCATATTCATAGAGATAGGGGACATAATACACATGGATATAGTAA
13815143 GTCTTGCTTAGGCTACTTTAATGGTAGTCTTTACATTTTCCCTTTCACTCGTAGTATGGGGAAGA
261 GTCTTGCTTAGGCTACTTTAATGGTAGTCTTTACATTTTCCCTTTCACTCGTAGTATGGGGAAGA
13815208 AGTGGGCTCTAGGGGTACTCTTAATGATTGGACCATGCAAACTAGAAATACTTTTTCTTGGATAA
326 AGTGGGCTCTAGGGGTACTCTTAATGATTGGACCATGCAAACTAGAAATACTTTTTCTTGGATAA
13815273 AGGAGGAGATTACTCGATCCATTTTCGTATCGCTCATGATCTATATAATAATCGGGGCTTCCATT
391 AGGAGGAGATTACTCGATCCATTTTCGTATCGCTCATGATCTATATAATAATCGGGGCTTCCATT
13815338 TCAAATGCATATCCCATTTTTGTGCAGCAGGGGTATGAAAATCCACGAGAAGCAACTGGGCGTAT
456 TCAAATGCATATCCCATTTTTGTGCAGCAGGGGTATGAAAATCCACGAGAAGCAACTGGGCGTAT
13815403 TGTATGTGCCAATTGCCATTCCGAACTTATCTATTAATATGCTAATAAGCCATTTAATGGCAGTT
521 TGTATGTGCCAATTGCCATTCCGAACTTATCTATTAATATGCTAATAAGCCATTTAATGGCAGTT
13815468 CCATCTATCACTTTATTGTGAAATACC
586 CCATCTATCACTTTATTGTGAAATACC
13815495 ATCACACAAGTTCAATATGAACTAGTACAGGTATTTACATGGGAATGGTTTATATATGATATACG
1 ATCACACAAGTTCAATATGAACTAGTACAGGTATTTACATGGGAATGGTTTATATATGATATACG
13815560 GATACACAGTGAACTTGTTATAAGCGGATTTATTGAAGTGATTCATCAACGGTGGCGTGTCACAA
66 GATACACAGTGAACTTGTTATAAGCGGATTTATTGAAGTGATTCATCAACGGTGGCGTGTCACAA
13815625 TTCCCTTTTCTTTTTGACTCTACGCCAATAATTCCACTATTATTAGTGAACAATAATGGAAAAAT
131 TTCCCTTTTCTTTTTGACTCTACGCCAATAATTCCACTATTATTAGTGAACAATAATGGAAAAAT
13815690 TAAATTCCTTCATATTTGTTTCATATTCATAGAGATAGGGGACATAATACACATGGATATAGTAA
196 TAAATTCCTTCATATTTGTTTCATATTCATAGAGATAGGGGACATAATACACATGGATATAGTAA
13815755 GTCTTGCTTAGGCTACTTTAATGGTAGTCTTTACATTTTCCCTTTCACTCGTAGTATGGGGAAGA
261 GTCTTGCTTAGGCTACTTTAATGGTAGTCTTTACATTTTCCCTTTCACTCGTAGTATGGGGAAGA
13815820 AGTGGGCTCTAGGGGTACTCTTAATGATTGGACCATGCAAACTAGAAATACTTTTTCTTGGATAA
326 AGTGGGCTCTAGGGGTACTCTTAATGATTGGACCATGCAAACTAGAAATACTTTTTCTTGGATAA
13815885 AGGAGGAGATTACTCGATCCATTTTCGTATCGCTCATGATCTATATAATAATCGGGGCTTCCATT
391 AGGAGGAGATTACTCGATCCATTTTCGTATCGCTCATGATCTATATAATAATCGGGGCTTCCATT
13815950 TCAAATGCATATCCCATTTTTGTGCAGCAGGGGTATGAAAATCCACGAGAAGCAACTGGGCGTAT
456 TCAAATGCATATCCCATTTTTGTGCAGCAGGGGTATGAAAATCCACGAGAAGCAACTGGGCGTAT
13816015 TGTATGTGCCAATTGCCATTCCGAACTTATCTATTAATATGCTAATAAGCCATTTAATGGCAGTT
521 TGTATGTGCCAATTGCCATTCCGAACTTATCTATTAATATGCTAATAAGCCATTTAATGGCAGTT
13816080 CCATCTATCACTTTATTGTGAAATACC
586 CCATCTATCACTTTATTGTGAAATACC
13816107 AT
1 AT
13816109 ATTGGCCCAT
Statistics
Matches: 614, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
612 614 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (612 bp):
ATCACACAAGTTCAATATGAACTAGTACAGGTATTTACATGGGAATGGTTTATATATGATATACG
GATACACAGTGAACTTGTTATAAGCGGATTTATTGAAGTGATTCATCAACGGTGGCGTGTCACAA
TTCCCTTTTCTTTTTGACTCTACGCCAATAATTCCACTATTATTAGTGAACAATAATGGAAAAAT
TAAATTCCTTCATATTTGTTTCATATTCATAGAGATAGGGGACATAATACACATGGATATAGTAA
GTCTTGCTTAGGCTACTTTAATGGTAGTCTTTACATTTTCCCTTTCACTCGTAGTATGGGGAAGA
AGTGGGCTCTAGGGGTACTCTTAATGATTGGACCATGCAAACTAGAAATACTTTTTCTTGGATAA
AGGAGGAGATTACTCGATCCATTTTCGTATCGCTCATGATCTATATAATAATCGGGGCTTCCATT
TCAAATGCATATCCCATTTTTGTGCAGCAGGGGTATGAAAATCCACGAGAAGCAACTGGGCGTAT
TGTATGTGCCAATTGCCATTCCGAACTTATCTATTAATATGCTAATAAGCCATTTAATGGCAGTT
CCATCTATCACTTTATTGTGAAATACC
Found at i:13816596 original size:40 final size:40
Alignment explanation
Indices: 13816541--13816702 Score: 324
Period size: 40 Copynumber: 4.0 Consensus size: 40
13816531 TTACAAATGG
13816541 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
1 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
13816581 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
1 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
13816621 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
1 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
13816661 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
1 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
13816701 TT
1 TT
13816703 CTTTTAAAGA
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.22, C:0.05, G:0.22, T:0.51
Consensus pattern (40 bp):
TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
Found at i:13822869 original size:63 final size:63
Alignment explanation
Indices: 13822770--13822895 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
13822760 TATGGGATAC
13822770 CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
1 CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
* *
13822833 CTACAAAGGGAAATTCAGAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
1 CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
13822896 TAGAGATCAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.20
Consensus pattern (63 bp):
CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
Found at i:13823850 original size:26 final size:26
Alignment explanation
Indices: 13823813--13823874 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
13823803 CATTTGATAG
13823813 TCCTAG-TTTTCGACGACTGTCTCTT
1 TCCTAGATTTTCGACGACTGTCTCTT
*
13823838 TCCTAGATTTTCGACGATTGTCTCTT
1 TCCTAGATTTTCGACGACTGTCTCTT
13823864 TCCTAGATTTT
1 TCCTAGATTTT
13823875 TCTTATTGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 6 0.17
26 29 0.83
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.47
Consensus pattern (26 bp):
TCCTAGATTTTCGACGACTGTCTCTT
Found at i:13825710 original size:25 final size:25
Alignment explanation
Indices: 13825668--13825747 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
13825658 AGCCCTCTCT
* * *
13825668 CGAGCCATATAATAGGAAGCTCATG
1 CGAGCTATATAATGGGAAGCTCATC
* * * *
13825693 TGAGTTATGTAATGGGAAGCTTATC
1 CGAGCTATATAATGGGAAGCTCATC
* *
13825718 CGAGCTATATAACGGGAAGCTCATA
1 CGAGCTATATAATGGGAAGCTCATC
13825743 CGAGC
1 CGAGC
13825748 CAATAACAGG
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (25 bp):
CGAGCTATATAATGGGAAGCTCATC
Found at i:13837831 original size:40 final size:40
Alignment explanation
Indices: 13837787--13837921 Score: 121
Period size: 40 Copynumber: 3.4 Consensus size: 40
13837777 GTTTGGAACA
* *
13837787 AAAGCGCCACAAAAAATCGAGCATTAGCGGCGATTTAGCC
1 AAAGCGCCACAAAAAATAGAGCATTAGCGGCGATTTATCC
* * ** *
13837827 AAAGCGCCGCTAAAGGTAGAGCATCAGCGGCGA-TTATCC
1 AAAGCGCCACAAAAAATAGAGCATTAGCGGCGATTTATCC
* * * * * **
13837866 GGAAGCGCCGCTAAAAATAG-GAATTAGCGGCGTTTTATAT
1 -AAAGCGCCACAAAAAATAGAGCATTAGCGGCGATTTATCC
13837906 AAAGCGCCACAAAAAA
1 AAAGCGCCACAAAAAA
13837922 CCTAAGACCA
Statistics
Matches: 75, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
39 28 0.37
40 47 0.63
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.16
Consensus pattern (40 bp):
AAAGCGCCACAAAAAATAGAGCATTAGCGGCGATTTATCC
Found at i:13838017 original size:41 final size:41
Alignment explanation
Indices: 13837960--13838139 Score: 306
Period size: 41 Copynumber: 4.4 Consensus size: 41
13837950 TATGTTAAAC
* *
13837960 CTTTAGCGGCGTTTTTGTGTAAGCGCCGCTAATGCTCTGAT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
*
13838001 CTTTAGAGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
*
13838042 CTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
* *
13838083 CTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
13838124 CTTTAGCGGCGTTTTT
1 CTTTAGCGGCGTTTTT
13838140 TTTCNNNNNN
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 133 1.00
ACGTcount: A:0.13, C:0.23, G:0.27, T:0.37
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGAT
Found at i:13839633 original size:15 final size:15
Alignment explanation
Indices: 13839612--13839649 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
13839602 TTTATGGTTA
13839612 ATTTAGGGGTTAGAG
1 ATTTAGGGGTTAGAG
* *
13839627 GTTTAGGGGTTTGAG
1 ATTTAGGGGTTAGAG
13839642 ATTTAGGG
1 ATTTAGGG
13839650 TTAATTTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.37
Consensus pattern (15 bp):
ATTTAGGGGTTAGAG
Found at i:13850517 original size:21 final size:21
Alignment explanation
Indices: 13850493--13850537 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
13850483 CAGCAGCTTA
*
13850493 AAGCAGATGCGGCAGTAAGAG
1 AAGCAGAGGCGGCAGTAAGAG
* *
13850514 AAGCAGAGGCGGTAGTGAGAG
1 AAGCAGAGGCGGCAGTAAGAG
13850535 AAG
1 AAG
13850538 TATAGGTTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.11, G:0.42, T:0.09
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGTAAGAG
Found at i:13850617 original size:26 final size:21
Alignment explanation
Indices: 13850548--13850605 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
13850538 TATAGGTTGC
13850548 AGCGAGGGAAGCAGAGGCTAA
1 AGCGAGGGAAGCAGAGGCTAA
*
13850569 AGGGAGGGAAGCAGAGGCTAA
1 AGCGAGGGAAGCAGAGGCTAA
13850590 AGCGAGGGAAGCAGAG
1 AGCGAGGGAAGCAGAG
13850606 CAGCGTCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.47, T:0.03
Consensus pattern (21 bp):
AGCGAGGGAAGCAGAGGCTAA
Found at i:13851007 original size:43 final size:43
Alignment explanation
Indices: 13850953--13851356 Score: 276
Period size: 43 Copynumber: 9.3 Consensus size: 43
13850943 AGGTGTTGGC
* *
13850953 CTTTAGTGGCGTTTCTGGTAAAAGCGCCGCTAAAGATAAGGGT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGGGT
* * * * *** *
13850996 CTTTCGCGGCGTTT-TCGGAAAAAGCACCCCTAAAGATCATTCTGC
1 CTTTAGCGGCGTTTGT-GGTAAAAGCGCCGCTAAAGAT-A-AGGGT
* * *
13851041 CAAATTTAGTGGCGTTTTTGGTTAAAGCGCCGCTAAAGATAAGGGT
1 C---TTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGGGT
* * * * *
13851087 CTTTAGCGGCGTTTGTAGAAAAAGCGCCACTAAAGATCATGGT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGGGT
** * *
13851130 CTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGGGT
* * * * *
13851173 CTTTAGTGGCGTTTGTCGTCAAAGCGCCGCTATAGATCAGGGT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGGGT
* * *
13851216 CTATT-GCGGCGTTTGAGAG-GAAAGCGCCGCTAAAGA-ATAGGTT
1 CT-TTAGCGGCGTTTGTG-GTAAAAGCGCCGCTAAAGATA-AGGGT
* * * * **** *
13851259 CTTTAGTGGCGTTTGAGGAGAAAAACGCCGCTAAAGACCTTGAT
1 CTTTAGCGGCGTTTGTGG-TAAAAGCGCCGCTAAAGATAAGGGT
* * *** * *
13851303 CTTTAGCGGCGCTTCTCCCAAAAACGCCGCTAAAGATCAGGGT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGGGT
13851346 CTTTAGCGGCG
1 CTTTAGCGGCG
13851357 CTTCCACTAA
Statistics
Matches: 281, Mismatches: 66, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
42 4 0.01
43 210 0.75
44 33 0.12
45 2 0.01
46 2 0.01
47 1 0.00
48 28 0.10
49 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGGGT
Found at i:13851057 original size:91 final size:91
Alignment explanation
Indices: 13850954--13851188 Score: 284
Period size: 91 Copynumber: 2.6 Consensus size: 91
13850944 GGTGTTGGCC
* *
13850954 TTTAGTGGCGTTTCTGGTAAAAGCGCCGCTAAAGATAAGGGTCTTTCGCGGCGTTT-TCGGAAAA
1 TTTAGTGGCGTTTCTGGTAAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGT-AGAAAA
*
13851018 AGCACCCCTAAAGATCATTCTGCCAAA
65 AGCACCACTAAAGATCATTCTGCCAAA
* *
13851045 TTTAGTGGCGTTTTTGGTTAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTAGAAAAA
1 TTTAGTGGCGTTTCTGGTAAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTAGAAAAA
* * *
13851110 GCGCCACTAAAGATCA-T-GGTC---
66 GCACCACTAAAGATCATTCTGCCAAA
* * ** * * *
13851131 TTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGT
1 TTTAGTGGCGTTTCTGGTAAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGT
13851189 CGTCAAAGCG
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
86 51 0.40
89 2 0.02
90 1 0.01
91 73 0.57
92 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (91 bp):
TTTAGTGGCGTTTCTGGTAAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTAGAAAAA
GCACCACTAAAGATCATTCTGCCAAA
Found at i:13851184 original size:86 final size:86
Alignment explanation
Indices: 13850935--13851356 Score: 330
Period size: 86 Copynumber: 4.8 Consensus size: 86
13850925 AAAAAAAAAA
* ** * * * **
13850935 GCCACTAAAGGTGTTGGCCTTTAGTGGCGTTTCTGGTAAAAGCGCCGCTAAAGATAAGGGTCTTT
1 GCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATAAGGGTCTTT
* *
13851000 CGCGGCGTTT-TCGGAAAAAGC
66 AGCGGCGTTTGT-AGAAAAAGC
* * * * * * **
13851021 ACCCCTAAAGATCATTCTGCCAAATTTAGTGGCGTTTTTGGTTAAAGCGCCGCTAAAGATAAGGG
1 GCCACTAAAGATCA-T-GGTC---TTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATAAGGG
13851086 TCTTTAGCGGCGTTTGTAGAAAAAGC
61 TCTTTAGCGGCGTTTGTAGAAAAAGC
* *
13851112 GCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTTCTTT
1 GCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATAAGGGTCTTT
* * **
13851177 AGTGGCGTTTGTCGTCAAAGC
66 AGCGGCGTTTGTAGAAAAAGC
* * * * * *
13851198 GCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGAGGAAAGCGCCGCTAAAGA-ATAGGTTCT
1 GCCACTAAAGATCATGGTCT-TTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATA-AGGGTCT
* *
13851261 TTAGTGGCGTTTG-AGGAGAAAAAC
64 TTAGCGGCGTTTGTA-GA-AAAAGC
* * * * * * **** * *
13851285 GCCGCTAAAGACCTTGATCTTTAGCGGCGCTTCTCCCAAAAACGCCGCTAAAGATCAGGGTCTTT
1 GCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATAAGGGTCTTT
13851350 AGCGGCG
66 AGCGGCG
13851357 CTTCCACTAA
Statistics
Matches: 274, Mismatches: 50, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
86 135 0.49
87 59 0.22
88 3 0.01
89 2 0.01
90 1 0.00
91 73 0.27
92 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (86 bp):
GCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATAAGGGTCTTT
AGCGGCGTTTGTAGAAAAAGC
Found at i:13851240 original size:129 final size:130
Alignment explanation
Indices: 13851045--13851356 Score: 343
Period size: 129 Copynumber: 2.4 Consensus size: 130
13851035 TTCTGCCAAA
* * *
13851045 TTTAGTGGCGTTTTTGGTTAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTAGAAAAA
1 TTTAGTGGCGTTTGTCGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTAGAAAAA
* * *
13851110 GCGCCACTAAAG-ATCATGG-TCTTTAGCGGCGTTTGTGG-GGAAAGCGCCGCTAAAGATTAGGT
66 GCGCCACTAAAGAAT-A-GGTTCTTTAGCGGCGTTTGAGGAGAAAAACGCCGCTAAAGATTAGGT
13851172 TC
129 TC
* * *
13851174 TTTAGTGGCGTTTGTCGTCAAAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTG-AGAGGA
1 TTTAGTGGCGTTTGTCGTCAAAGCGCCGCTAAAGATAAGGGTCT-TTAGCGGCGTTTGTAGA-AA
* *
13851237 AAGCGCCGCTAAAGAATAGGTTCTTTAGTGGCGTTTGAGGAGAAAAACGCCGCTAAAGACCTT--
64 AAGCGCCACTAAAGAATAGGTTCTTTAGCGGCGTTTGAGGAGAAAAACGCCGCTAAAGA--TTAG
*
13851300 GATC
127 GTTC
* * * * * *
13851304 TTTAGCGGCGCTTCTC-CCAAAAACGCCGCTAAAGATCAGGGTCTTTAGCGGCG
1 TTTAGTGGCGTTTGTCGTC-AAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCG
13851357 CTTCCACTAA
Statistics
Matches: 156, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
128 5 0.03
129 84 0.54
130 65 0.42
132 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (130 bp):
TTTAGTGGCGTTTGTCGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTAGAAAAA
GCGCCACTAAAGAATAGGTTCTTTAGCGGCGTTTGAGGAGAAAAACGCCGCTAAAGATTAGGTTC
Found at i:13851357 original size:43 final size:43
Alignment explanation
Indices: 13851068--13851403 Score: 250
Period size: 43 Copynumber: 7.8 Consensus size: 43
13851058 TTGGTTAAAG
*
13851068 CGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGT-AGAAAAA
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTCAGAAAAA
* * ** * *
13851110 GCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAG
1 -CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTCAGAAAAA
* * * * *
13851154 CGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTC-GTCAAAG
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTCAG-AAAAA
* ** * *
13851197 CGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGAGGAAAG
1 CGCCGCTAAAGATCAGGGTCT-TTAGCGGCGTTTGTCAGAAAAA
* * **
13851240 CGCCGCTAAAGAAT-AGGTTCTTTAGTGGCGTTTGAGGAGAAAAA
1 CGCCGCTAAAG-ATCAGGGTCTTTAGCGGCGTTTG-TCAGAAAAA
* ** * * * **
13851284 CGCCGCTAAAGACCTTGATCTTTAGCGGCGCTTCTCCCAAAAA
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTCAGAAAAA
* * **
13851327 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTT-CCACTAAAA
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTCAGAAAAA
* *** *
13851369 CGCCGCTAAAGGTCTTAGTCTTCAGCGGCGTTTGT
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGT
13851404 GCTAGAAGCG
Statistics
Matches: 233, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
42 36 0.15
43 157 0.67
44 40 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTCAGAAAAA
Found at i:13851533 original size:22 final size:22
Alignment explanation
Indices: 13851505--13851547 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
13851495 TTGCGGCGCT
*
13851505 AAAAAGCACCGCTAAAGGCCTA
1 AAAAAGCACCGCTAAAAGCCTA
*
13851527 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCACCGCTAAAAGCCT
13851548 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.28, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAAGCACCGCTAAAAGCCTA
Found at i:13856584 original size:22 final size:22
Alignment explanation
Indices: 13856558--13856600 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
13856548 AGCAAAGATC
* *
13856558 AAAACGTGCTACAAAGTAGAGG
1 AAAACATGCTACAAAGCAGAGG
13856580 AAAACATGCTACAAAGCAGAG
1 AAAACATGCTACAAAGCAGAG
13856601 TGATTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.12
Consensus pattern (22 bp):
AAAACATGCTACAAAGCAGAGG
Found at i:13857466 original size:143 final size:144
Alignment explanation
Indices: 13857297--13857583 Score: 567
Period size: 143 Copynumber: 2.0 Consensus size: 144
13857287 TATATATTCA
13857297 ACGGTTGATATTTTTTTATATATAAAAAAATAGTTAGAAGTTTTAAATTTGCATTAAACTTGACA
1 ACGGTTGATATTTTTTTATATATAAAAAAATAGTTAGAAGTTTTAAATTTGCATTAAACTTGACA
13857362 TATATGACCTATATGAATAGACCATAAAATATAACGGTTGTATTGTTTAAAAAAAATATTAATCA
66 TATATGACCTATATGAATAGACCATAAAATATAACGGTTGTATTGTTTAAAAAAAATATTAATCA
13857427 TATAAATAGTTATG
131 TATAAATAGTTATG
13857441 ACGGTTGATA-TTTTTTATATATAAAAAAATAGTTAGAAGTTTTAAATTTGCATTAAACTTGACA
1 ACGGTTGATATTTTTTTATATATAAAAAAATAGTTAGAAGTTTTAAATTTGCATTAAACTTGACA
13857505 TATATGACCTATATGAATAGACCATAAAATATAACGGTTGTATTGTTTAAAAAAAATATTAATCA
66 TATATGACCTATATGAATAGACCATAAAATATAACGGTTGTATTGTTTAAAAAAAATATTAATCA
13857570 TATAAATAGTTATG
131 TATAAATAGTTATG
13857584 GAAGCTTATT
Statistics
Matches: 143, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
143 133 0.93
144 10 0.07
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (144 bp):
ACGGTTGATATTTTTTTATATATAAAAAAATAGTTAGAAGTTTTAAATTTGCATTAAACTTGACA
TATATGACCTATATGAATAGACCATAAAATATAACGGTTGTATTGTTTAAAAAAAATATTAATCA
TATAAATAGTTATG
Found at i:13858362 original size:22 final size:21
Alignment explanation
Indices: 13858318--13858363 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
13858308 TACTCTCAAA
* *
13858318 TTTTCACTTTTTCTTCAATAT
1 TTTTCACTTTTTATTCAAAAT
*
13858339 TTTTCACATTTTTATTTAAAAT
1 TTTTCAC-TTTTTATTCAAAAT
13858361 TTT
1 TTT
13858364 AATTTCCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTCACTTTTTATTCAAAAT
Found at i:13858363 original size:21 final size:20
Alignment explanation
Indices: 13858315--13858363 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
13858305 CTCTACTCTC
*
13858315 AAATTTTCACTTTTTCTTCA
1 AAATTTTCACTTTTTATTCA
* *
13858335 ATATTTTTCACATTTTTATTTA
1 A-AATTTTCAC-TTTTTATTCA
13858357 AAATTTT
1 AAATTTT
13858364 AATTTCCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 13 0.57
22 9 0.39
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (20 bp):
AAATTTTCACTTTTTATTCA
Found at i:13863869 original size:4 final size:4
Alignment explanation
Indices: 13863860--13863887 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
13863850 CCTTTTTCTT
13863860 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
13863888 CTTCCTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:13863965 original size:15 final size:15
Alignment explanation
Indices: 13863937--13863978 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
13863927 GTTTCGTCTC
* *
13863937 TTCTATTCTGTTTCTT
1 TTCT-TTCTTTTTCTA
13863953 TTCTTTCTTTTTCTA
1 TTCTTTCTTTTTCTA
13863968 TTCTTTCTTTT
1 TTCTTTCTTTT
13863979 GTTTTATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (15 bp):
TTCTTTCTTTTTCTA
Found at i:13864000 original size:5 final size:5
Alignment explanation
Indices: 13863987--13864058 Score: 62
Period size: 5 Copynumber: 14.4 Consensus size: 5
13863977 TTGTTTTATG
13863987 TATATA TATAA TATAA TATAA TAT-A T-TAA TAATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
13864035 CATAA TCATTAC TATAA TATAA TA
1 TATAA T-A-TAA TATAA TATAA TA
13864059 ATATTTTTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 34 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:13864012 original size:19 final size:19
Alignment explanation
Indices: 13863988--13864030 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
13863978 TGTTTTATGT
13863988 ATATATATAAT-ATAATATA
1 ATATAT-TAATAATAATATA
13864007 ATATATTAATAATAATATA
1 ATATATTAATAATAATATA
13864026 ATATA
1 ATATA
13864031 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATATTAATAATAATATA
Found at i:13864040 original size:24 final size:25
Alignment explanation
Indices: 13863994--13864059 Score: 73
Period size: 24 Copynumber: 2.7 Consensus size: 25
13863984 ATGTATATAT
* *
13863994 ATAATATAATATAATATATTAAT-A
1 ATAATATAATATAATAAAATAATCA
13864018 ATAATATAATATAA-AAACATAATCA
1 ATAATATAATATAATAAA-ATAATCA
* *
13864043 TTACTATAATATAATAA
1 ATAATATAATATAATAA
13864060 TATTTTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 2 0.06
24 18 0.51
25 13 0.37
26 2 0.06
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (25 bp):
ATAATATAATATAATAAAATAATCA
Found at i:13867868 original size:20 final size:20
Alignment explanation
Indices: 13867840--13867886 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
13867830 TAGATACAAA
* *
13867840 TTTAATTTT-AGTTATTTTAT
1 TTTATTTTTCAGTTA-TTAAT
*
13867860 TTTATTTTTCGGTTATTAAT
1 TTTATTTTTCAGTTATTAAT
13867880 TTTATTT
1 TTTATTT
13867887 CAATTTCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (20 bp):
TTTATTTTTCAGTTATTAAT
Found at i:13868173 original size:48 final size:48
Alignment explanation
Indices: 13868102--13868198 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
13868092 GTCACTTCTC
13868102 ATAAATTATTATCTTAAATTGTTTCTGGTGTAAACATTATAAAACCTT
1 ATAAATTATTATCTTAAATTGTTTCTGGTGTAAACATTATAAAACCTT
13868150 ATAAATTATTATCTTAAATTGTTTCTGGTGTAAACATTATAAAACCTT
1 ATAAATTATTATCTTAAATTGTTTCTGGTGTAAACATTATAAAACCTT
13868198 A
1 A
13868199 GTGTTTGAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.43
Consensus pattern (48 bp):
ATAAATTATTATCTTAAATTGTTTCTGGTGTAAACATTATAAAACCTT
Found at i:13871081 original size:7 final size:7
Alignment explanation
Indices: 13871069--13871097 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
13871059 ATGAAATTAA
13871069 CGAGATT
1 CGAGATT
13871076 CGAGATT
1 CGAGATT
13871083 CGAGATT
1 CGAGATT
13871090 CGAGATT
1 CGAGATT
13871097 C
1 C
13871098 AATAGGTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (7 bp):
CGAGATT
Found at i:13875711 original size:29 final size:29
Alignment explanation
Indices: 13875672--13875830 Score: 176
Period size: 29 Copynumber: 5.5 Consensus size: 29
13875662 TCCGAAAATA
*
13875672 GCCACAAAGGCTTCCTTTTAATAGAGATC
1 GCCACAAAGGCTTCCTTATAATAGAGATC
* * *
13875701 CCCCCAAAGGCTTCCTTATAACAGAGATC
1 GCCACAAAGGCTTCCTTATAATAGAGATC
* * * *
13875730 GCCATAAAGGCTTCCTTATAACAAAGATA
1 GCCACAAAGGCTTCCTTATAATAGAGATC
* * * *
13875759 GCTAAAAAGACATT-CTTTTAATAGAGATC
1 GCCACAAAGGC-TTCCTTATAATAGAGATC
*
13875788 GCCACAAAGGCTTCCTTATAATAGAGGTC
1 GCCACAAAGGCTTCCTTATAATAGAGATC
*
13875817 ACCACAAAGGCTTC
1 GCCACAAAGGCTTC
13875831 TTTTCAAAGG
Statistics
Matches: 106, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
28 2 0.02
29 102 0.96
30 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (29 bp):
GCCACAAAGGCTTCCTTATAATAGAGATC
Found at i:13880021 original size:30 final size:31
Alignment explanation
Indices: 13879987--13880054 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
13879977 TTGCCCAAGA
** * **
13879987 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
*
13880017 GTAAATGCAAAAAATTTGAAGGACCAATAGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
13880048 GTAAATA
1 GTAAATA
13880055 TTTTAAGGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAAATACAAAAAATTTGAAGGACCAATAGT
Found at i:13886478 original size:113 final size:113
Alignment explanation
Indices: 13886280--13886490 Score: 404
Period size: 113 Copynumber: 1.9 Consensus size: 113
13886270 ATTTTATTAA
13886280 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
13886345 ATGCTTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
66 ATGCTTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
* *
13886393 TCAAATGAGTCCTTCAATTTGAAGTGCCATTTTCATCAATAACCTGTCCAATGAAAGTGAATTCA
1 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
13886458 ATGCTTAAGTTGTTCAACTACCTTTATTAATAC
66 ATGCTTAAGTTGTTCAACTACCTTTATTAATAC
13886491 AATGAATCTT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 96 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.37
Consensus pattern (113 bp):
TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
ATGCTTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
Found at i:13886731 original size:12 final size:12
Alignment explanation
Indices: 13886714--13886750 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
13886704 TGGTATTTGA
13886714 TATTGTTGTTAT
1 TATTGTTGTTAT
*
13886726 TATTGTTGTTGT
1 TATTGTTGTTAT
*
13886738 TGTTGTTGTTAT
1 TATTGTTGTTAT
13886750 T
1 T
13886751 TTGCATTGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.11, C:0.00, G:0.22, T:0.68
Consensus pattern (12 bp):
TATTGTTGTTAT
Found at i:13891890 original size:24 final size:23
Alignment explanation
Indices: 13891842--13891886 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13891832 CCTATGGAGG
* *
13891842 TCAATCGATTAAATTAGGCTCAT
1 TCAATCAATTAAATTAGACTCAT
13891865 TCAATCAACTTAAATT-GACTCA
1 TCAATCAA-TTAAATTAGACTCA
13891887 ATTCGTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (23 bp):
TCAATCAATTAAATTAGACTCAT
Found at i:13895608 original size:10 final size:10
Alignment explanation
Indices: 13895586--13895618 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
13895576 TGCATGTATT
13895586 CAAA-ACTAC
1 CAAAGACTAC
*
13895595 CAAAGACTAT
1 CAAAGACTAC
13895605 CAAAGACTAC
1 CAAAGACTAC
13895615 CAAA
1 CAAA
13895619 CCTCTTTCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.19
10 17 0.81
ACGTcount: A:0.55, C:0.27, G:0.06, T:0.12
Consensus pattern (10 bp):
CAAAGACTAC
Found at i:13901446 original size:5 final size:5
Alignment explanation
Indices: 13901438--13901475 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
13901428 TTGGTGCTTG
* *
13901438 AGCTG AGCTA AGCTA AGCTA AGCTA AGCAA AGC-A AGCT
1 AGCTA AGCTA AGCTA AGCTA AGCTA AGCTA AGCTA AGCT
13901476 TCTGAATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (5 bp):
AGCTA
Found at i:13903739 original size:2 final size:2
Alignment explanation
Indices: 13903734--13903775 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
13903724 GAAAAAAAGG
13903734 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -A GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
13903775 G
1 G
13903776 GAGCCCTCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:13905970 original size:20 final size:21
Alignment explanation
Indices: 13905938--13905978 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
13905928 ATTTACCGTT
13905938 CAACCCTTTTCATGTAAGCAC
1 CAACCCTTTTCATGTAAGCAC
13905959 CAACCC-TTTCATGTAAGCAC
1 CAACCCTTTTCATGTAAGCAC
13905979 TAACTCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.29, C:0.34, G:0.10, T:0.27
Consensus pattern (21 bp):
CAACCCTTTTCATGTAAGCAC
Found at i:13915035 original size:125 final size:125
Alignment explanation
Indices: 13914806--13915621 Score: 1155
Period size: 125 Copynumber: 6.4 Consensus size: 125
13914796 ACTGGTGAAA
* *
13914806 CACCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGAAGATTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGC--AG-AG--T--AGGTTGTAGATCTTATCTCCCTAA
*
13914871 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAA
59 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
13914936 GC
124 GC
* *
13914938 CACCAAGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGAAGTAG
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGCAGTAG
*
13915003 TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGC
66 TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
* *
13915063 CACCAAGCCTTGTCTCCCTGAGCATCAGCGGAGTAGGTTGAAAATTTTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTG-------TAGATCTTATCTCCCTAA
* * *
13915128 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAACAGATTTAA
59 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
13915193 GC
124 GC
* *
13915195 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGCAGTAG
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGCAGTAG
* * *
13915260 TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAAATTTAAGT
66 TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
* * *
13915320 CACAAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGCAGTAG
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGCAGTAG
* *
13915385 TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTTGGAAGCAAATTTAAGC
66 TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
* * * *
13915445 CACCAAGCCTTGTCTCCCTAAGCAGCAGCAGAGAAGGTTGAAGATTGTAGATCTTATCTTCTTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGC--AG-A-G-T--AGGTTGTAGATCTTATCTCCCTAA
* * *
13915510 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGACTTAA
59 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
13915575 GC
124 GC
* * * *
13915577 CACCAAGCCTTATCTCCCTGAGCAGTAGCGGAGTAGGTTGAAGAT
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAGAT
13915622 GGAAAACCAT
Statistics
Matches: 626, Mismatches: 44, Indels: 35
0.89 0.06 0.05
Matches are distributed among these distances:
125 360 0.58
127 4 0.01
128 2 0.00
129 4 0.01
130 4 0.01
132 252 0.40
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (125 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
Found at i:13915262 original size:257 final size:255
Alignment explanation
Indices: 13914806--13915618 Score: 1224
Period size: 257 Copynumber: 3.2 Consensus size: 255
13914796 ACTGGTGAAA
* *
13914806 CACCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGAAGATTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGAA-ATT-TAGATCTTATCTCCCTAA
*
13914871 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAA
64 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
*
13914936 GCCACCAAGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGAAGT
129 GCCACCAAGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGCAGT
*
13915001 AGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGC
194 AGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAGATTTAAGC
13915063 CACCAAGCCTTGTCTCCCTGAGCA-TCAGCGGAGTAGGTTGAAAATTTTAGATCTTATCTCCCTA
1 CACCAAGCCTTGTCTCCCTGAGCAGT-AGCGGAGTAGGTTG-AAA-TTTAGATCTTATCTCCCTA
* * *
13915127 AGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAACAGATTTA
63 AGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
* * *
13915192 AGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGCAG
128 AGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGCAG
* *
13915257 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAAATTTAAGT
193 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAGATTTAAGC
* * * * *
13915320 CACAAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTG-----TAAATCCTATCTCCCTAAGC
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGAAATTTAGATCTTATCTCCCTAAGC
* *
13915380 AGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTTGGAAGCAAATTTAAGC
66 AGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
* * *
13915445 CACCAAGCCTTGTCTCCCTAAGCAGCAGCAGAGAAGGTTGAAGATTGTAGATCTTATCTTCTTAA
131 CACCAAGCCTTGTCTCCCTAAGCAGCAGC--AG-A-G-T--AGGTTGTAGATCTTATCTCCCTAA
* * * *
13915510 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGACTTAA
189 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAGATTTAA
13915575 GC
254 GC
*
13915577 CACCAAGCCTTATCTCCCTGAGCAGTAGCGGAGTAGGTTGAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGAA
13915619 GATGGAAAAC
Statistics
Matches: 504, Mismatches: 39, Indels: 24
0.89 0.07 0.04
Matches are distributed among these distances:
250 106 0.21
252 2 0.00
253 1 0.00
254 1 0.00
255 1 0.00
256 1 0.00
257 388 0.77
258 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (255 bp):
CACCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGAAATTTAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
CACCAAGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAGATTTAAGC
Found at i:13915577 original size:382 final size:382
Alignment explanation
Indices: 13914806--13915616 Score: 1316
Period size: 382 Copynumber: 2.1 Consensus size: 382
13914796 ACTGGTGAAA
* * *
13914806 CACCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGAAGATTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGC--AG-AG--T--AGGTTGTAAATCCTATCTCCCTAA
* *
13914871 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAA
59 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAAATTTAA
* * *
13914936 GCCACCAAGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAGATCTTATCTCCCTAAGAAGT
124 GCCACAAAGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGAAGT
* *
13915001 AGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCAC
189 AGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCAC
* * * * *
13915066 CAAGCCTTGTCTCCCTGAGCATCAGCGGAGTAGGTTGAAAATTTTAGATCTTATCTCCCTAAGCA
254 CAAGCCTTGTCTCCCTAAGCAGCAGCAGAGAAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCA
*
13915131 GTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAACAGATTTAAGC
319 GTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAACAGACTTAAGC
*
13915195 CACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGCAGTAG
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGCAGTAG
*
13915260 TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAAATTTAAGTCACAA
66 TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAAATTTAAGCCACAA
* *
13915325 AGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGCAGTAGTGGAG
131 AGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGAAGTAGTGGAG
*
13915390 CAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTTGGAAGCAAATTTAAGCCACCAAGCCT
196 CAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCACCAAGCCT
* * *
13915455 TGTCTCCCTAAGCAGCAGCAGAGAAGGTTGAAGATTGTAGATCTTATCTTCTTAAGCAGTAGTGG
261 TGTCTCCCTAAGCAGCAGCAGAGAAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
*
13915520 AGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGACTTAAGC
326 AGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAACAGACTTAAGC
* *
13915577 CACCAAGCCTTATCTCCCTGAGCAGTAGCGGAGTAGGTTG
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGCAGAGTAGGTTG
13915617 AAGATGGAAA
Statistics
Matches: 394, Mismatches: 28, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
382 361 0.92
384 1 0.00
386 2 0.01
387 2 0.01
389 28 0.07
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (382 bp):
CACCAAGCCTTGTCTCCCTGAGCAGTAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGAAAATTTAAGCCACAA
AGCCTTGTCTCCCTAAGCAGCAGCAGAGTAGGTTGTAAATCCTATCTCCCTAAGAAGTAGTGGAG
CAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCACCAAGCCT
TGTCTCCCTAAGCAGCAGCAGAGAAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAACAGACTTAAGC
Found at i:13915679 original size:44 final size:43
Alignment explanation
Indices: 13915631--13916132 Score: 259
Period size: 44 Copynumber: 11.6 Consensus size: 43
13915621 TGGAAAACCA
*
13915631 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCT-ATAATCT
* * * * * *
13915675 TATCTCCCTGAAGTTGCAGTGAAGCGGATCAAAACCT-TGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAGAGCTAT-AATCT
** * * * * *
13915719 TATCTCTTTGAAGTTGCAG-AGAGCAGA-TCGCG-TCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTATAATCT
* *
13915759 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAG-TAAACGAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTATA--A-TCT
* * * *
13915803 TATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATG-GAAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-T-TAGA-GCTATAATCT
* * *
13915848 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAGAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAG-CTATAATCT
* * * * *
13915892 TATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCT-TGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAGAGCTAT-AATCT
* * * * * *
13915936 TATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCG-TCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTATAATCT
* *
13915976 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAG-TAAACGAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTATA--A-TCT
* * **
13916020 TATC-CTCCTGAAGTTGCAGT-GAGGTAGATT-GAAGATGGCAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGATTAG-AGCT-ATAATCT
* * *
13916064 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAGAACCGATAAT-T
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAG-AGCTATAATCT
* *
13916107 CTATCTCTCTGAAGTTACAGTGGAGC
1 -TATCTCCCTGAAGTTGCAGTGGAGC
13916133 GGATCAAAAC
Statistics
Matches: 350, Mismatches: 73, Indels: 70
0.71 0.15 0.14
Matches are distributed among these distances:
40 43 0.12
41 24 0.07
42 3 0.01
43 24 0.07
44 205 0.59
45 39 0.11
46 5 0.01
47 3 0.01
48 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTATAATCT
Found at i:13915856 original size:217 final size:217
Alignment explanation
Indices: 13915615--13916170 Score: 961
Period size: 217 Copynumber: 2.6 Consensus size: 217
13915605 CGGAGTAGGT
* * *
13915615 TGAAGATGGAAAACCATATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTGATAATCCTATCT
1 TGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCT
* *
13915680 CCCTGAAGTTGCAGTGAAGCGGATCAAAACCTTGGATCTTATCTCTTTGAAGTTGCAGAGAGCAG
66 CCCTGAAGTTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAG
13915745 ATCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAAACGAGTCTTATCCTC
131 ATCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAAACGAGTCTTATCCTC
13915810 CTGAAGTTGCAGTGAGGTAGAC
196 CTGAAGTTGCAGTGAGGTAGAC
*
13915832 TGAAGATGGAAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAGAGCCGATAATCCTATCT
1 TGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCT
* *
13915897 CCCTAAAGTTGCAGTGGAGCAGATCAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAG
66 CCCTGAAGTTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAG
13915962 ATCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAAACGAGTCTTATCCTC
131 ATCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAAACGAGTCTTATCCTC
*
13916027 CTGAAGTTGCAGTGAGGTAGAT
196 CTGAAGTTGCAGTGAGGTAGAC
* * * *
13916049 TGAAGATGG-CAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAGAACCGATAATTCTATCT
1 TGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCT
* * *
13916113 CTCTGAAGTTACAGTGGAGCGGATCAAAACCTTGGATCTTCTCTCTCTGAAGTTGCAG
66 CCCTGAAGTTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTCTCTGAAGTTGCAG
13916171 TGGAGTAGAC
Statistics
Matches: 320, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
216 103 0.32
217 217 0.68
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (217 bp):
TGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCT
CCCTGAAGTTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAG
ATCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAAACGAGTCTTATCCTC
CTGAAGTTGCAGTGAGGTAGAC
Found at i:13916033 original size:84 final size:86
Alignment explanation
Indices: 13915887--13916092 Score: 212
Period size: 84 Copynumber: 2.4 Consensus size: 86
13915877 TAGAGCCGAT
*
13915887 AATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCTTGGATCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACC-TGGATCTTATCTCTCTGAAGTTG
*
13915952 CAGAGA-GCAGATCG-CG-T-C
65 CAGAGAGGCAGATCGAAGATGC
* * *
13915970 TAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAAA-C--GAGTCTTATC-CTCCTGA
1 -AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TCA--AAACCTGGA-TCTTATCTCT-CTGA
* * *
13916031 AGTTGCAGTGAGGTAGATTGAAGATGGC
60 AGTTGCAGAGAGGCAGATCGAAGAT-GC
13916059 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAT
13916093 TAGAACCGAT
Statistics
Matches: 102, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
83 4 0.04
84 51 0.50
85 8 0.08
86 2 0.02
87 5 0.05
88 31 0.30
89 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (86 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCTGGATCTTATCTCTCTGAAGTTGC
AGAGAGGCAGATCGAAGATGC
Found at i:13930340 original size:21 final size:22
Alignment explanation
Indices: 13930291--13930337 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
13930281 AAAAATGGGC
13930291 TAGGCCTCGAGTAAGGCATTTT
1 TAGGCCTCGAGTAAGGCATTTT
13930313 TAGGCCTCGAGTAAGGCATTTT
1 TAGGCCTCGAGTAAGGCATTTT
13930335 TAG
1 TAG
13930338 CCTAGTCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (22 bp):
TAGGCCTCGAGTAAGGCATTTT
Found at i:13930532 original size:30 final size:30
Alignment explanation
Indices: 13930498--13930555 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
13930488 AACTTATTTT
*
13930498 ATTGTTAATCTTGTTATTGTTTTAAAGGCA
1 ATTGTTAATCTTGTTATTATTTTAAAGGCA
* *
13930528 ATTGTTAATTTTGTTATTATTTTCAAGG
1 ATTGTTAATCTTGTTATTATTTTAAAGG
13930556 TATTTGCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (30 bp):
ATTGTTAATCTTGTTATTATTTTAAAGGCA
Found at i:13930699 original size:11 final size:11
Alignment explanation
Indices: 13930683--13930713 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
13930673 TATATACATT
13930683 TAAAAATTATA
1 TAAAAATTATA
*
13930694 TAAAAATAATA
1 TAAAAATTATA
13930705 TAAAAATTA
1 TAAAAATTA
13930714 ATACGGGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:13930963 original size:32 final size:31
Alignment explanation
Indices: 13930923--13930987 Score: 112
Period size: 32 Copynumber: 2.1 Consensus size: 31
13930913 TTATAATAAA
*
13930923 AATTAAAATAAAGGCATAAAAACTAGAAAAC
1 AATTAAAATAAAGGCATAAAAACTAAAAAAC
13930954 AATTCAAAATAAAGGCATAAAAACTAAAAAAC
1 AATT-AAAATAAAGGCATAAAAACTAAAAAAC
13930986 AA
1 AA
13930988 ATTTCCTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 4 0.12
32 28 0.88
ACGTcount: A:0.66, C:0.11, G:0.08, T:0.15
Consensus pattern (31 bp):
AATTAAAATAAAGGCATAAAAACTAAAAAAC
Found at i:13941222 original size:98 final size:97
Alignment explanation
Indices: 13941049--13941249 Score: 375
Period size: 98 Copynumber: 2.1 Consensus size: 97
13941039 CCTAATTTGA
*
13941049 TCAAAAGAAGATGAGCCATTTTCGCATGGCCATTTATATACATGTTCCAAAACTAACCAAAAACA
1 TCAAAAGAAGATGAGCCATTTTCGAATGGCCATTTATATACATGTTCCAAAACTAACCAAAAACA
13941114 TAAGCAAGCCTATACATGCCATAATATCGAGT
66 TAAGCAAGCCTATACATGCCATAATATCGAGT
*
13941146 TCAACAAGAAGATGAGCCATTTTTGAATGGCCATTTATATACATGTTCCAAAACTAACCAAAAAC
1 TCAA-AAGAAGATGAGCCATTTTCGAATGGCCATTTATATACATGTTCCAAAACTAACCAAAAAC
13941211 ATAAGCAAGCCTATACATGCCATAATATCGAGT
65 ATAAGCAAGCCTATACATGCCATAATATCGAGT
13941244 TCAAAA
1 TCAAAA
13941250 ATTTATCAAA
Statistics
Matches: 101, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
97 6 0.06
98 95 0.94
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (97 bp):
TCAAAAGAAGATGAGCCATTTTCGAATGGCCATTTATATACATGTTCCAAAACTAACCAAAAACA
TAAGCAAGCCTATACATGCCATAATATCGAGT
Found at i:13943012 original size:305 final size:306
Alignment explanation
Indices: 13942450--13943058 Score: 1069
Period size: 305 Copynumber: 2.0 Consensus size: 306
13942440 CTTCACGTTA
13942450 TAAATACATTAGCAAGTTAGCACTTTACATATTAATTAGTTAATTTCACATTTTACGCGATTAAG
1 TAAATACATTAGCAAGTTAGCACTTTACATATTAATTAGTTAATTTCACATTTTACGCGATTAAG
13942515 TCCTTTTATTAAATTAAACACACAAACAATAAAATTAATTCACGAAACTTTCACACATGTAAATT
66 TCCTTTTATTAAATTAAACACACAAACAATAAAATTAATTCACGAAACTTTCACACATGTAAATT
13942580 CACACATGATTAACACAGAAAATAATATTAAAAATATCTTTTAGAATCGAATTTGTGGTCCCGAA
131 CACACATGATTAACACAGAAAATAATATTAAAAATATCTTTTAGAATCGAATTTGTGGTCCCGAA
*
13942645 ACCACTATTCCAATTAGGGCCAAAATCGAGCTTTTACAACTCTCCCCCTTAGGGATTTTCGTCCC
196 ACCACTATTCCAATTAGGGCCAAAATCGAGCTGTTACAACTCTCCCCCTTAGGGATTTTCGTCCC
13942710 CGAAAATCTTACCGATGAATAGGTTTGGATAACGCTCTTTCATTAT
261 CGAAAATCTTACCGATGAATAGGTTTGGATAACGCTCTTTCATTAT
13942756 TAAATACATT-GCAAGTTAGCACTTTACATATTAATTAGTTAATTTCACATTTTACGCGATTAAG
1 TAAATACATTAGCAAGTTAGCACTTTACATATTAATTAGTTAATTTCACATTTTACGCGATTAAG
* *
13942820 TCCTTTTATTAAATTAAATACACAAACAATAAAATTAATTCATGAAACTTTCACACATGTAAATT
66 TCCTTTTATTAAATTAAACACACAAACAATAAAATTAATTCACGAAACTTTCACACATGTAAATT
* * * *
13942885 CACACATGATTAACACAGAAAATAATATTAAAATTATTTTTTAGACTC-AGGTTTGTGGTCCCGA
131 CACACATGATTAACACAGAAAATAATATTAAAAATATCTTTTAGAATCGA-ATTTGTGGTCCCGA
* * *
13942949 AACCACTATTTCGATTAGGGCCAAAATCGGGCTGTTACAACTCTCCCCCTTAGGGATTTTCGTCC
195 AACCACTATTCCAATTAGGGCCAAAATCGAGCTGTTACAACTCTCCCCCTTAGGGATTTTCGTCC
* * * *
13943014 CCGAAAATCTTACTGGTGAATAGGTTTGGATAACTCTTTTTCATT
260 CCGAAAATCTTACCGATGAATAGGTTTGGATAACGCTCTTTCATT
13943059 GTATCTTCTG
Statistics
Matches: 288, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
304 1 0.00
305 277 0.96
306 10 0.03
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (306 bp):
TAAATACATTAGCAAGTTAGCACTTTACATATTAATTAGTTAATTTCACATTTTACGCGATTAAG
TCCTTTTATTAAATTAAACACACAAACAATAAAATTAATTCACGAAACTTTCACACATGTAAATT
CACACATGATTAACACAGAAAATAATATTAAAAATATCTTTTAGAATCGAATTTGTGGTCCCGAA
ACCACTATTCCAATTAGGGCCAAAATCGAGCTGTTACAACTCTCCCCCTTAGGGATTTTCGTCCC
CGAAAATCTTACCGATGAATAGGTTTGGATAACGCTCTTTCATTAT
Found at i:13950241 original size:10 final size:10
Alignment explanation
Indices: 13950225--13950260 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
13950215 CATAATAACT
13950225 TTATAATATA
1 TTATAATATA
*
13950235 ATATAATATA
1 TTATAATATA
13950245 TTATAATATA
1 TTATAATATA
13950255 TTATAA
1 TTATAA
13950261 GCTTTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TTATAATATA
Found at i:13950250 original size:20 final size:19
Alignment explanation
Indices: 13950224--13950278 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 19
13950214 TCATAATAAC
*
13950224 TTTATAATATAATATAATA
1 TTTATAATATAATATAAGA
* *
13950243 TATTATAATATATTATAAGC
1 T-TTATAATATAATATAAGA
13950263 TTTATAA-ATAATATAA
1 TTTATAATATAATATAA
13950279 AAACTATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 8 0.26
19 7 0.23
20 16 0.52
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
TTTATAATATAATATAAGA
Found at i:13950278 original size:5 final size:5
Alignment explanation
Indices: 13950226--13950260 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
13950216 ATAATAACTT
* *
13950226 TATAA TATAA TATAA TATAT TATAA TATAT TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA
13950261 GCTTTATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (5 bp):
TATAA
Found at i:13956586 original size:3 final size:3
Alignment explanation
Indices: 13956580--13956605 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
13956570 AATAATAATA
13956580 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
13956606 AATGGTAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:13958329 original size:43 final size:43
Alignment explanation
Indices: 13958280--13958418 Score: 117
Period size: 43 Copynumber: 3.3 Consensus size: 43
13958270 CAACTTCAGA
* *
13958280 GAGATAAGATCTATTACTTTAATCCTCTCCACTACTGCTTAGG
1 GAGATAAGATCTATTACTTTAATCCACTCCACTACTGATTAGG
* * * * * **
13958323 GAGATAAGATCTGA-TGC---GATCCACTCTACTGC-AATTTCAAA
1 GAGATAAGATCT-ATTACTTTAATCCACTCCACTACTGA-TT-AGG
* *
13958364 GAGATAAGATCTATTACTTTAATTCGCTCCACTACTGATTAGG
1 GAGATAAGATCTATTACTTTAATCCACTCCACTACTGATTAGG
13958407 GAGATAAGATCT
1 GAGATAAGATCT
13958419 GATACGATCC
Statistics
Matches: 70, Mismatches: 18, Indels: 16
0.67 0.17 0.15
Matches are distributed among these distances:
40 14 0.20
41 15 0.21
43 27 0.39
44 13 0.19
45 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (43 bp):
GAGATAAGATCTATTACTTTAATCCACTCCACTACTGATTAGG
Found at i:13958375 original size:41 final size:40
Alignment explanation
Indices: 13958323--13958459 Score: 116
Period size: 41 Copynumber: 3.3 Consensus size: 40
13958313 ACTGCTTAGG
*
13958323 GAGATAAGATCTGATGCGATCCACTCTACTGCAATTTCAAA
1 GAGATAAGATCTGATACGATCCACTCTACTGCAA-TTCAAA
* * * * * * **
13958364 GAGATAAGATCT-ATTACTTTAATTCGCTCCACTACTGATT-AGG
1 GAGATAAGATCTGA-TAC---GATCCACTCTACTGC-AATTCAAA
13958407 GAGATAAGATCTGATACGATCCACTCTACTGCAACTTCAAA
1 GAGATAAGATCTGATACGATCCACTCTACTGCAA-TTCAAA
13958448 GAGATAAGATCT
1 GAGATAAGATCT
13958460 ATTACTGTAA
Statistics
Matches: 71, Mismatches: 17, Indels: 16
0.68 0.16 0.15
Matches are distributed among these distances:
39 1 0.01
40 13 0.18
41 27 0.38
43 16 0.23
44 13 0.18
45 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (40 bp):
GAGATAAGATCTGATACGATCCACTCTACTGCAATTCAAA
Found at i:13958394 original size:84 final size:84
Alignment explanation
Indices: 13958253--13958482 Score: 388
Period size: 84 Copynumber: 2.7 Consensus size: 84
13958243 CAAGACTTGG
* * * *
13958253 TGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCTCTCCACTACTGC
1 TGCGATCCACTCTACTGCAACTTCAAAGAGATAAGATCTATTACTTTAATCCGCTCCACTACTGA
13958318 TTAGGGAGATAAGATCTGA
66 TTAGGGAGATAAGATCTGA
* *
13958337 TGCGATCCACTCTACTGCAATTTCAAAGAGATAAGATCTATTACTTTAATTCGCTCCACTACTGA
1 TGCGATCCACTCTACTGCAACTTCAAAGAGATAAGATCTATTACTTTAATCCGCTCCACTACTGA
13958402 TTAGGGAGATAAGATCTGA
66 TTAGGGAGATAAGATCTGA
* *
13958421 TACGATCCACTCTACTGCAACTTCAAAGAGATAAGATCTATTACTGTAATCCGCTCCACTAC
1 TGCGATCCACTCTACTGCAACTTCAAAGAGATAAGATCTATTACTTTAATCCGCTCCACTAC
13958483 AACTTCTGGG
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 136 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (84 bp):
TGCGATCCACTCTACTGCAACTTCAAAGAGATAAGATCTATTACTTTAATCCGCTCCACTACTGA
TTAGGGAGATAAGATCTGA
Found at i:13958703 original size:44 final size:45
Alignment explanation
Indices: 13958270--13958714 Score: 238
Period size: 44 Copynumber: 10.4 Consensus size: 45
13958260 TACTCTACTG
* * *
13958270 CAACTTCAGAGAGATAAGATCT-ATTACTTTAATCCTCTCCACTA
1 CAACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
** * * * *
13958314 CTGCTT-AGGGAGATAAGATCTGA-TGC-G--ATCCACTCTACTG
1 CAACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
* ** * *
13958354 CAATTTCAAAGAGATAAGATCT-ATTACTTTAATTCGCTCCACTA
1 CAACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
* * * *
13958398 CTGA-TT-AGGGAGATAAGATCTGA-TAC-G--ATCCACTCTACTG
1 C-AACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
**
13958438 CAACTTCAAAGAGATAAGATCT-ATTACTGTAATCCGCTCCACTA
1 CAACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
* * * **
13958482 CAACTTCTGGGAGATAGGAT-T-ATCGACT-TCAATCTACTCCACTA
1 CAACTTCAGGGAGATAAGATCTGAT-TACTGT-AATCCGCTCCACTA
* * * * ** * * *
13958526 CAACCTCAGGGAGATAAGATTTGCTT-CTTTGGTCTGCCCCACTG
1 CAACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
** * * * * * *
13958570 TGACTTCAGGGGGATAAGA-CTTGTTTTCT-CAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATC-TGATTACTGTAATCCGCTCCACTA
* * * *
13958614 CAACTTCAGGGAGATAAGACCTGA-TGC-G--ATCCGCTCTACTG
1 CAACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
**
13958655 CAACTTCAAAGAGATAAGATCT-ATTACTGTAATCCGCTCCACTA
1 CAACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
*
13958699 CAACTTCTGGGAGATA
1 CAACTTCAGGGAGATA
13958715 GGATTATCGG
Statistics
Matches: 298, Mismatches: 76, Indels: 54
0.70 0.18 0.13
Matches are distributed among these distances:
39 1 0.00
40 28 0.09
41 63 0.21
42 2 0.01
43 38 0.13
44 159 0.53
45 6 0.02
46 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (45 bp):
CAACTTCAGGGAGATAAGATCTGATTACTGTAATCCGCTCCACTA
Found at i:13958872 original size:128 final size:128
Alignment explanation
Indices: 13958723--13959318 Score: 958
Period size: 128 Copynumber: 4.7 Consensus size: 128
13958713 TAGGATTATC
* *
13958723 GGCTTCAATCTGCTCCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
* *
13958788 TTAGGAAGACAAGGTCTGTAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACTTGT
66 TTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACTTGT
** *
13958851 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCACCTTCGATCTACTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
* * * *
13958916 TTAGGAAGACAAGGTCTGTAATTTCCAACCTACTCCACTACTGACCAGGGATATAGGACTTGT
66 TTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACTTGT
* *
13958979 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTCGACCTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
* * * * *
13959044 TTAGGGAGACAATATCTATAATTTCCAGCCTACTCCGCTGCTGACTAGGGACATAGGACTTGT
66 TTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACTTGT
* *
13959107 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
* * * * *
13959172 TTAGGGATACAAGATCTATAGTTTCCAACCTACTCCACTGCTGACTAGGGAGATAGGACTTGT
66 TTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACTTGT
13959235 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
*
13959300 TTTGGGAGACAAGATCTGT
66 TTAGGGAGACAAGATCTGT
13959319 TATATTCGCT
Statistics
Matches: 432, Mismatches: 36, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
128 432 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (128 bp):
GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
TTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACTTGT
Found at i:13960598 original size:15 final size:15
Alignment explanation
Indices: 13960561--13960598 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
13960551 AGCCTTTCCA
*
13960561 TCATTTTTTTATTTT
1 TCATTTTTCTATTTT
*
13960576 TCA-TTTTCTCTTTT
1 TCATTTTTCTATTTT
13960590 TCATTTTTC
1 TCATTTTTC
13960599 ACACATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (15 bp):
TCATTTTTCTATTTT
Found at i:13961488 original size:32 final size:32
Alignment explanation
Indices: 13961452--13961512 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
13961442 TTTTTTTCTC
13961452 TTTTTCATATTTTT-ATTTTGACTTTGATTGAT
1 TTTTTC-TATTTTTGATTTTGACTTTGATTGAT
* *
13961484 TTTTTCTTTTTTTGCTTTTGACTTTGATT
1 TTTTTCTATTTTTGATTTTGACTTTGATT
13961513 TTTTTTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 6 0.23
32 20 0.77
ACGTcount: A:0.13, C:0.08, G:0.10, T:0.69
Consensus pattern (32 bp):
TTTTTCTATTTTTGATTTTGACTTTGATTGAT
Found at i:13966243 original size:3 final size:3
Alignment explanation
Indices: 13966237--13966262 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
13966227 AATAATAATA
13966237 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
13966263 AATGGTAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:13969182 original size:211 final size:212
Alignment explanation
Indices: 13968818--13969243 Score: 624
Period size: 211 Copynumber: 2.0 Consensus size: 212
13968808 CAATATTCAA
* * *
13968818 AAAAGAATAACTAATACTATACTAAAAATATAAAAAATGTCATTATAATTCTAAAAATTAAATTA
1 AAAAGAATAACTAATACTATAATAAAAATATAAAAAATATCATCATAATTCTAAAAATTAAATTA
* * * * *
13968883 AAAAAATGTGACCTTAGTCATATTTCTCAATACTAGGCATCCTAAATTGTACTATTCGCTTTTTC
66 AAAAAATGTGACCTTAGTCATATTTCTCAATACTAAGCATCCTAAATTGCACCATCCACTTTTTC
* * *
13968948 ATAAGATCGAATTCATCAATGATAGACTCCATTGAAAATTCTCGAACTATCTCTTTTTCGATATA
131 ATAAGATCAAATTCATCAATGATAGAATCCATTGAAAATTATCGAACTATCTCTTTTTCGATATA
*
13969013 TGTCACCAAGTAAG-TG
196 TGTCACCAAGCAAGTTG
*
13969029 AAAAGAATAACTAATACTATAAT-AAAATATCAAAAATATCATCATAATTCTAAAAATTAAATTA
1 AAAAGAATAACTAATACTATAATAAAAATATAAAAAATATCATCATAATTCTAAAAATTAAATTA
* * *
13969093 AAAAATACT-TGACCTTAGTCTTATTTCTCAATACTAAGTATCCTAAATTGCACCCTCCACTTTT
66 AAAAA-A-TGTGACCTTAGTCATATTTCTCAATACTAAGCATCCTAAATTGCACCATCCACTTTT
** * *
13969157 TCATAAGATCAAATTCATCAATGATAGAATCTGTTGAAAATTATCGAGCTATCTCTTTTTCGATG
129 TCATAAGATCAAATTCATCAATGATAGAATCCATTGAAAATTATCGAACTATCTCTTTTTCGATA
*
13969222 TATGTTACCAAGCAAGTTG
194 TATGTCACCAAGCAAGTTG
13969241 AAA
1 AAA
13969244 GAAAATCATC
Statistics
Matches: 191, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
210 43 0.23
211 142 0.74
212 6 0.03
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (212 bp):
AAAAGAATAACTAATACTATAATAAAAATATAAAAAATATCATCATAATTCTAAAAATTAAATTA
AAAAAATGTGACCTTAGTCATATTTCTCAATACTAAGCATCCTAAATTGCACCATCCACTTTTTC
ATAAGATCAAATTCATCAATGATAGAATCCATTGAAAATTATCGAACTATCTCTTTTTCGATATA
TGTCACCAAGCAAGTTG
Found at i:13973529 original size:44 final size:44
Alignment explanation
Indices: 13973481--13973697 Score: 229
Period size: 51 Copynumber: 4.6 Consensus size: 44
13973471 CTTATGTATG
*
13973481 ATCACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTGAAGCT
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCT
* * * *
13973525 ATCACTTATCACCTGTCACTTGTCACTAGCTGAATAAGTGTAGGTAAAGCT
1 ATCACTTATCACTTGTCAC-TG--A-T--CAG-ATAAGTGTAGCTGAAGCT
*
13973576 ACCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCT
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCT
*
13973620 ATCACTTATCACCTGTCACTTGTCACTGATCAAATAAGTGTAGCTGAAGCT
1 ATCAC-T-T-A----TCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCT
13973671 A-CTACTTATCACTTGTCACTGATCAGA
1 ATC-ACTTATCACTTGTCACTGATCAGA
13973698 AGTACTCAAA
Statistics
Matches: 145, Mismatches: 13, Indels: 30
0.77 0.07 0.16
Matches are distributed among these distances:
44 55 0.38
45 5 0.03
46 1 0.01
47 3 0.02
48 3 0.02
49 1 0.01
50 6 0.04
51 71 0.49
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCT
Found at i:13973545 original size:95 final size:95
Alignment explanation
Indices: 13973483--13973697 Score: 310
Period size: 95 Copynumber: 2.3 Consensus size: 95
13973473 TATGTATGAT
*
13973483 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACCTGTCAC-TTG
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACCTGTCACTTTG
*
13973547 TCACTAGCTGAATAAGTGTAGGTAAAGCTAC
66 CCACTAGCTGAATAAGTGTAGGTAAAGC-AC
13973578 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACCTGTCAC-TTG
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACCTGTCACTTTG
* * * * *
13973642 TCACT-GATCAAATAAGTGTAGCTGAAGCTAC
66 CCACTAGCT-GAATAAGTGTAGGTAAAGC-AC
*
13973673 TACTTATCACTTGTCACTGATCAGA
1 CACTTATCACTTGTCACTGATCAGA
13973698 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
94 2 0.02
95 111 0.98
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (95 bp):
CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACCTGTCACTTTG
CCACTAGCTGAATAAGTGTAGGTAAAGCAC
Found at i:13989150 original size:50 final size:49
Alignment explanation
Indices: 13989021--13989247 Score: 163
Period size: 50 Copynumber: 4.5 Consensus size: 49
13989011 ACTGCCAATT
* * * ** * *
13989021 CCATATCCCAGATATGGTCTTATATGAGAGTTCTCATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTAT-TGGGACCTCTCATATCGGTGCCAACG
** *
13989071 CCATGTCCCAGACATGGTCTTAAAAGGGACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTT-ATTGGGACCTCTCATATCGGTGCCAACG
* *
13989121 CCATGTCCCAGACATGGTCTTACTTGGGACCTCTCATAATCTCAATGATGCCAATG
1 CCATGTCCCAGACATGGTCTTA-TTGGGACCTCTCAT-A--TC---GGTGCCAACG
* * * * * * *
13989177 CCATGTTCTAGACATGGTCTTA-TGCTGG--CTCACATATCGATGTCGATG
1 CCATGTCCCAGACATGGTCTTATTG--GGACCTCTCATATCGGTGCCAACG
13989225 CCATGTCCCAGACATGGTCTTAT
1 CCATGTCCCAGACATGGTCTTAT
13989248 ACGAGATCGC
Statistics
Matches: 144, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
48 28 0.19
49 1 0.01
50 71 0.49
51 3 0.02
53 3 0.02
54 8 0.06
56 30 0.21
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTATTGGGACCTCTCATATCGGTGCCAACG
Found at i:13998548 original size:16 final size:17
Alignment explanation
Indices: 13998516--13998549 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
13998506 AGGGATGAAG
13998516 TTTGTTTGATGTTTATT
1 TTTGTTTGATGTTTATT
*
13998533 TTTGTTTGCT-TTTATT
1 TTTGTTTGATGTTTATT
13998549 T
1 T
13998550 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.09, C:0.03, G:0.15, T:0.74
Consensus pattern (17 bp):
TTTGTTTGATGTTTATT
Found at i:14003049 original size:35 final size:35
Alignment explanation
Indices: 14003006--14003079 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
14002996 AAGAGAGCAT
*
14003006 CATTAGTAGAAGCTCTACTACCATTCTCGTGTGAG
1 CATTAGTAGAAGATCTACTACCATTCTCGTGTGAG
14003041 CATTAGTAGAAGATCTACTACCATTCTCGTGTGAG
1 CATTAGTAGAAGATCTACTACCATTCTCGTGTGAG
14003076 CATT
1 CATT
14003080 GAGACCGTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (35 bp):
CATTAGTAGAAGATCTACTACCATTCTCGTGTGAG
Found at i:14013976 original size:32 final size:31
Alignment explanation
Indices: 14013905--14013982 Score: 113
Period size: 32 Copynumber: 2.5 Consensus size: 31
14013895 AATATTGCAT
* * *
14013905 ATTAATTGAA-GGAGTTTATTTTTAAAAGAT
1 ATTAATTGAAGGGAGTTTATTTTAAAAAAAA
14013935 ATTAATTGAAGGGAGTTTATTTCTAAAAAAAA
1 ATTAATTGAAGGGAGTTTATTT-TAAAAAAAA
14013967 ATTAATTGAAGGGAGT
1 ATTAATTGAAGGGAGT
14013983 CTGTTCAACG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
30 10 0.23
31 11 0.26
32 22 0.51
ACGTcount: A:0.42, C:0.01, G:0.19, T:0.37
Consensus pattern (31 bp):
ATTAATTGAAGGGAGTTTATTTTAAAAAAAA
Found at i:14016118 original size:212 final size:211
Alignment explanation
Indices: 14015741--14016170 Score: 736
Period size: 212 Copynumber: 2.0 Consensus size: 211
14015731 CAATATTCAA
14015741 AAAAGAATAACTAATACTATACTAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
1 AAAAGAATAACTAATACTATACTAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
* * *
14015806 AAAAAATGTGTCCTTAGTCCTATTTCTCAATACTAGGCATCCTAAATTGCACCATTCGTTTTTTC
66 AAAAAATGTGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCATTCGCTTTTTC
*
14015871 ATAAGATTGAATTCATTAATGACAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATGTA
131 ATAAGATTGAATTCATCAATGACAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATGTA
14015936 TGTCACCAAGTAAGTT
196 TGTCACCAAGTAAGTT
14015952 AAAAGAATAACTAATACTATACTAAAAATATAAAAAAATATCATTATAATTCTAAAAATTAAATT
1 AAAAGAATAACTAATACTATACTAAAAATAT-AAAAAATATCATTATAATTCTAAAAATTAAATT
* *
14016017 AAAAGAACT-TGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCCTTCGCTTTT
65 AAAA-AAATGTGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCATTCGCTTTT
* * *
14016081 TCATAAGATTGAATTCATCAATGATAGAATTTGTTGAAAATTCTCGAGCTATCTCTTTTTCGGTG
129 TCATAAGATTGAATTCATCAATGACAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATG
*
14016146 TATGTTACCAAGTAAGTT
194 TATGTCACCAAGTAAGTT
*
14016164 GAAAGAA
1 AAAAGAA
14016171 AATCATCCTC
Statistics
Matches: 206, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
211 31 0.15
212 172 0.83
213 3 0.01
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (211 bp):
AAAAGAATAACTAATACTATACTAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
AAAAAATGTGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCATTCGCTTTTTC
ATAAGATTGAATTCATCAATGACAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATGTA
TGTCACCAAGTAAGTT
Found at i:14017879 original size:13 final size:13
Alignment explanation
Indices: 14017861--14017887 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14017851 GAGTTGAAGC
14017861 TTTTTTATTTTAT
1 TTTTTTATTTTAT
14017874 TTTTTTATTTTAT
1 TTTTTTATTTTAT
14017887 T
1 T
14017888 CTGGTTCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTAT
Found at i:14022039 original size:21 final size:22
Alignment explanation
Indices: 14022015--14022064 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 22
14022005 GGAGTGTTCT
14022015 AAGCA-ATTAGACTGCGGAAGA
1 AAGCAGATTAGACTGCGGAAGA
14022036 AAGCCAGCGATTAGACTGCGGAAGA
1 AAG-CA--GATTAGACTGCGGAAGA
14022061 AAGC
1 AAGC
14022065 CCTGTAGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 3 0.12
22 2 0.08
24 1 0.04
25 19 0.76
ACGTcount: A:0.40, C:0.18, G:0.30, T:0.12
Consensus pattern (22 bp):
AAGCAGATTAGACTGCGGAAGA
Found at i:14023000 original size:6 final size:6
Alignment explanation
Indices: 14022949--14022999 Score: 95
Period size: 6 Copynumber: 8.7 Consensus size: 6
14022939 TTCAATCAAA
14022949 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT-
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
14022996 AAAA
1 AAAA
14023000 AAAGAAAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 4 0.09
6 41 0.91
ACGTcount: A:0.71, C:0.14, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATC
Found at i:14023012 original size:29 final size:29
Alignment explanation
Indices: 14022946--14023067 Score: 95
Period size: 29 Copynumber: 4.1 Consensus size: 29
14022936 AGATTCAATC
*
14022946 AAAAAAATCAAAATCAAAATCAAAATCAA-A
1 AAAAAAATCAAAATCAAAAT-AAAA-AAAGA
**
14022976 ATCAAAATCAAAATCAAAATAAAAAAAGA
1 AAAAAAATCAAAATCAAAATAAAAAAAGA
* **
14023005 AAAAAAATCAAAGTCAAAA-GCAAAAAGA
1 AAAAAAATCAAAATCAAAATAAAAAAAGA
*** * *
14023033 GAAATCGATCAAAGTCAAAATAAAAATATGA
1 -AAAAAAATCAAAATCAAAATAAAAA-AAGA
14023064 AAAA
1 AAAA
14023068 GAGAAAAAAG
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
28 9 0.12
29 37 0.51
30 24 0.33
31 3 0.04
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.13
Consensus pattern (29 bp):
AAAAAAATCAAAATCAAAATAAAAAAAGA
Found at i:14024823 original size:87 final size:87
Alignment explanation
Indices: 14024675--14025003 Score: 532
Period size: 87 Copynumber: 3.8 Consensus size: 87
14024665 TAGTAAAAAT
* * *
14024675 CGAAAACAAAGACTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATATTGCCTTC
1 CGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTC
14024740 CTACGTTAACAGCGAAGCAGAC
66 CTACGTTAACAGCGAAGCAGAC
14024762 CGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTC
1 CGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTC
* *
14024827 CTGCGTTAACAACGAAGCAGAC
66 CTACGTTAACAGCGAAGCAGAC
* * * *
14024849 TGAAAACAAAGCCTTGCCTCCATCTGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTTCTTTC
1 CGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTC
** *
14024914 CTGTGTTAACAGTGAAGCAGAC
66 CTACGTTAACAGCGAAGCAGAC
* *
14024936 CGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGTTGGTTAAAGATAACAGATCTTGCCTTC
1 CGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTC
14025001 CTA
66 CTA
14025004 AGCACTAGCG
Statistics
Matches: 224, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 224 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (87 bp):
CGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTC
CTACGTTAACAGCGAAGCAGAC
Found at i:14025291 original size:87 final size:85
Alignment explanation
Indices: 14025122--14025279 Score: 212
Period size: 84 Copynumber: 1.8 Consensus size: 85
14025112 AAATTACAAG
*
14025122 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAATCAATCATATCTCTCTGAAGTTGCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT--AAGAAATCAATCATATCTCCCTGAAGTTGCAG
*
14025187 TGGAGCAGATTAAAACAATAGA
64 TGGAGCAGATGAAAACAATAGA
* * * * *
14025209 TCTTATCTCTCTAAGCAGTAGTGGAGCAGAT-CG-CATCAGGTCTTATCTCCCTGAAGTTGCAGT
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAGAAATCA-ATCATATCTCCCTGAAGTTGCAGT
14025272 GGAGCAGA
65 GGAGCAGA
14025280 CTGAGAAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
83 4 0.06
84 30 0.47
87 30 0.47
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (85 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAGAAATCAATCATATCTCCCTGAAGTTGCAGTG
GAGCAGATGAAAACAATAGA
Found at i:14025297 original size:44 final size:42
Alignment explanation
Indices: 14025117--14025325 Score: 149
Period size: 44 Copynumber: 4.9 Consensus size: 42
14025107 GTTGGAAATT
** *
14025117 ACAAGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGATAGAAGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAG-A-AA
* * *
14025160 ATCAA-TCATATCTCTCTGAAGTTGCAGTGGAGCAGAT-TAAA
1 A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAA
* ** * * *
14025201 ACAATAGATCTTATCTCTCT-AAGCAGTAGTGGAGCAGATCG-CA
1 AC-A-AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAA
* *
14025244 TCAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGAAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T-AGAAA
* * *
14025288 ACAAGTCTTATCCCCCCTGAAGTTACAGTGGAGTAGAT
1 ACAAGTCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGAT
14025326 CGCAGCAGAT
Statistics
Matches: 129, Mismatches: 25, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
40 12 0.09
41 20 0.16
42 4 0.03
43 30 0.23
44 41 0.32
45 22 0.17
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (42 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAA
Found at i:14025399 original size:44 final size:44
Alignment explanation
Indices: 14025329--14025424 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
14025319 AGTAGATCGC
* *
14025329 AGCAGATTGAAGCCAGAAATCTTATCTCCTTGAGATTACAGC-GG
1 AGCAGATTGAAGCCAGAAATCGTATCTCCCTGAGATTACA-CTGG
* * *
14025373 AGCAGATTGAAGCTAGTAATCGTATCTCCCTGAGATTATACTGG
1 AGCAGATTGAAGCCAGAAATCGTATCTCCCTGAGATTACACTGG
14025417 AGCAGATT
1 AGCAGATT
14025425 AAAATAAAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.02
44 45 0.98
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
AGCAGATTGAAGCCAGAAATCGTATCTCCCTGAGATTACACTGG
Found at i:14025483 original size:142 final size:142
Alignment explanation
Indices: 14025304--14025759 Score: 723
Period size: 142 Copynumber: 3.2 Consensus size: 142
14025294 CTTATCCCCC
* * *
14025304 CTGAAGTTACAGTGGAGTAGATCGCAGCAGATTGAAGCCAGAAATCTTATCTCCTTGAGATTACA
1 CTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACA
* * * *
14025369 GCGGAGCAGATTGAAGCTAGTAATCGTATCTCCCTGAGATTATACTGGAGCAGATTAAAATAAAG
66 GCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG
*
14025434 GGTCTTATCTCT
131 GATCTTATCTCT
* * * *
14025446 CTAAAGTTACAGTAAAGTAGATCGCATCAGTTTGAAGCCAGAAATCTCATCTCCCTGAGATTACA
1 CTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACA
* *
14025511 GCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGCAGTGGATTAAAATAAAG
66 GCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG
14025576 GATCTTATCTCT
131 GATCTTATCTCT
*
14025588 CTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTAGCTCCCTGAGATTACA
1 CTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACA
* * * * *
14025653 ACGGAACAGATTAAAGCTAGTAATCCTATCTCCCTGAGAATACAGTGGAGCGGATTAATATAAAG
66 GCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG
14025718 GATCTTATCTCT
131 GATCTTATCTCT
*
14025730 CTGAAGTTACAGTAGAGTAGATTGCATCAG
1 CTGAAGTTACAGTAGAGTAGATCGCATCAG
14025760 GTCTTATCTC
Statistics
Matches: 287, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
142 287 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (142 bp):
CTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACA
GCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG
GATCTTATCTCT
Found at i:14026250 original size:50 final size:51
Alignment explanation
Indices: 14025824--14026250 Score: 305
Period size: 50 Copynumber: 8.5 Consensus size: 51
14025814 TTTCCAGGCG
* * *
14025824 ATGCAGTGGAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCTGAC-
1 ATGCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
** * * * * *
14025873 ATGGCAGTTCAAAAGATTAAAGCTACAAT-AGCGAATCTTACCTCCCAGGCA
1 AT-GCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
* * * * * * *
14025924 ATGTAGTGGAACATATTAAAGCCAC-ATCGATGAATCTTGCTTCCCCGACA
1 ATGCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
* * ** * * * * *
14025974 TTGTAGTTAAAAAGATTAAAGCCA-TAGCGGCGAATCTTACTTCTCTGGCG
1 ATGCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
* * * * * *
14026024 ATGCAGCGGAACAGATTAAAGCCAC-ATCTGTGAATCTTGCTTCCCCGACA
1 ATGCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
* ** * * ** * *
14026074 TTGCAGTTAAAAAGATTAAAGCCACAGT-AGAAAATCTTACTTCTCTGGCG
1 ATGCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
* * * * *
14026124 ATGCAGCGGAACAGATTAAAGCCAC-ATCGGTGAATCTTATTTCCCCGACA
1 ATGCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
* ** * *
14026174 TTGCAGTTAAAAAGATTAAAGCCACAAT-GGCGAATCTTACTTCCCTGGCG
1 ATGCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
* *
14026224 GTGCAGTGGAATAGATTAAAGCCACAA
1 ATGCAGTGGAAAAGATTAAAGCCACAA
14026251 CAACGAATCT
Statistics
Matches: 277, Mismatches: 92, Indels: 17
0.72 0.24 0.04
Matches are distributed among these distances:
49 5 0.02
50 265 0.96
51 7 0.03
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (51 bp):
ATGCAGTGGAAAAGATTAAAGCCACAATCGGTGAATCTTACTTCCCTGGCA
Found at i:14026290 original size:100 final size:100
Alignment explanation
Indices: 14025820--14026249 Score: 608
Period size: 100 Copynumber: 4.3 Consensus size: 100
14025810 TATTTTTCCA
* * *
14025820 GGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATGGCAGTTCAA
1 GGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
* * *
14025885 AAGATTAAAGCTACAATAGCGAATCTTACCTCCCA
66 AAGATTAAAGCCACAATAGCGAATCTTACTTCCCT
* * * * *
14025920 GGCAATGTAGTGGAACATATTAAAGCCACATCGATGAATCTTGCTTCCCCGACATTGTAGTTAAA
1 GGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
* *** *
14025985 AAGATTAAAGCCATAGCGGCGAATCTTACTTCTCT
66 AAGATTAAAGCCACAATAGCGAATCTTACTTCCCT
* *
14026020 GGCGATGCAGCGGAACAGATTAAAGCCACATCTGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
1 GGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
* ** *
14026085 AAGATTAAAGCCACAGTAGAAAATCTTACTTCTCT
66 AAGATTAAAGCCACAATAGCGAATCTTACTTCCCT
* **
14026120 GGCGATGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTATTTCCCCGACATTGCAGTTAAA
1 GGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
*
14026185 AAGATTAAAGCCACAATGGCGAATCTTACTTCCCT
66 AAGATTAAAGCCACAATAGCGAATCTTACTTCCCT
* *
14026220 GGCGGTGCAGTGGAATAGATTAAAGCCACA
1 GGCGATGCAGTGGAACAGATTAAAGCCACA
14026250 ACAACGAATC
Statistics
Matches: 291, Mismatches: 39, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 291 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
GGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
AAGATTAAAGCCACAATAGCGAATCTTACTTCCCT
Found at i:14027291 original size:13 final size:13
Alignment explanation
Indices: 14027273--14027299 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14027263 GAGTTGAAGA
14027273 TTTTTTATTTTAT
1 TTTTTTATTTTAT
14027286 TTTTTTATTTTAT
1 TTTTTTATTTTAT
14027299 T
1 T
14027300 CTGGTTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTAT
Found at i:14049052 original size:38 final size:37
Alignment explanation
Indices: 14048982--14049054 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
14048972 CTTTCATAAT
*
14048982 TTCACTTTTTCACTTTCAATCATAATTCAATTCAAAA
1 TTCACTTTTCCACTTTCAATCATAATTCAATTCAAAA
14049019 TTCACTTTTCCA-TTTCTAAGTCGAT-ATTCAATTCAA
1 TTCACTTTTCCACTTTC-AA-TC-ATAATTCAATTCAA
14049055 TTCCACACCT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 13 0.41
39 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.03, T:0.44
Consensus pattern (37 bp):
TTCACTTTTCCACTTTCAATCATAATTCAATTCAAAA
Found at i:14049198 original size:45 final size:45
Alignment explanation
Indices: 14049130--14049223 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 45
14049120 AATAGATACT
* *
14049130 CGGTGGATTCAGCACATAGCAACCACCTGATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTGACTAATCAATGATGTC
* * * *
14049175 CGGTGGAATCAGCATATATCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTGACTAATCAATGATGTC
14049220 CGGT
1 CGGT
14049224 TCACATAGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTGACTAATCAATGATGTC
Found at i:14061656 original size:27 final size:27
Alignment explanation
Indices: 14061625--14061676 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
14061615 ATTATAACAC
14061625 TCAGTTTGTGCAAGTGTACACAGTCGT
1 TCAGTTTGTGCAAGTGTACACAGTCGT
*
14061652 TCAGTTTTTGCAAGTGTACACAGTC
1 TCAGTTTGTGCAAGTGTACACAGTC
14061677 CACATAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (27 bp):
TCAGTTTGTGCAAGTGTACACAGTCGT
Found at i:14065744 original size:28 final size:28
Alignment explanation
Indices: 14065712--14065773 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
14065702 GTATTAATTT
*
14065712 TTTTCGAATTGGCAGGGGCACCACAAAC
1 TTTTCAAATTGGCAGGGGCACCACAAAC
14065740 TTTTCAAATTGGCAGGGGCACCACAAAC
1 TTTTCAAATTGGCAGGGGCACCACAAAC
14065768 TTTTCA
1 TTTTCA
14065774 TTATTCTCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (28 bp):
TTTTCAAATTGGCAGGGGCACCACAAAC
Found at i:14078801 original size:43 final size:42
Alignment explanation
Indices: 14078753--14079169 Score: 568
Period size: 42 Copynumber: 9.9 Consensus size: 42
14078743 AGCGTTTACA
*
14078753 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTTG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
14078795 AAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
1 -AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
14078838 AAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
1 -AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
*
14078881 AAAAAAATGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
* * * * *
14078923 AAAAAAA-GACGCTACAGAACATGTTCTTTAGTGTCGCTTAG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
* *
14078964 AAAAAAAAACGCCGCTATAGAACATGTTCTTTAGCGGCGCTTAG
1 --AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
* * *
14079008 AAAAAAACACCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
* * *
14079050 GAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
* * * * *
14079092 GAAAACACGCCGTTAAAGACCATGTTCTTTAGCGG-GGTTTAG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTT-G
* * *
14079134 AAAAAATCGCCGCTAAAGAACATGATGTTTAGCGGC
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGC
14079170 ATTTTTTTAC
Statistics
Matches: 342, Mismatches: 27, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
41 32 0.09
42 189 0.55
43 91 0.27
44 30 0.09
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTG
Found at i:14095130 original size:10 final size:10
Alignment explanation
Indices: 14095115--14095139 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14095105 TTCGACATGG
14095115 TTTTGAACAA
1 TTTTGAACAA
14095125 TTTTGAACAA
1 TTTTGAACAA
14095135 TTTTG
1 TTTTG
14095140 CAATTTTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (10 bp):
TTTTGAACAA
Found at i:14095222 original size:51 final size:51
Alignment explanation
Indices: 14095141--14095376 Score: 463
Period size: 51 Copynumber: 4.6 Consensus size: 51
14095131 ACAATTTTGC
*
14095141 AATTTTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
1 AATTGTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
14095192 AATTGTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
1 AATTGTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
14095243 AATTGTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
1 AATTGTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
14095294 AATTGTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
1 AATTGTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
14095345 AATTGTCGACAGAACAGCAGTAAATGATTCAA
1 AATTGTCGACAGAACAGCAGTAAATGATTCAA
14095377 TTTGAAATGA
Statistics
Matches: 184, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 184 1.00
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.22
Consensus pattern (51 bp):
AATTGTCGACAGAACAGCAGTAAATGATTCAACATGGTAGCAATGGAAACT
Found at i:14096415 original size:198 final size:198
Alignment explanation
Indices: 14095793--14096399 Score: 984
Period size: 198 Copynumber: 3.1 Consensus size: 198
14095783 AATTAACCCA
* * *
14095793 TTTGCAGCGTTTATATACCAGCGCCACTGGTAATATGATCAAACGCTGTCGTTTCCCGATCAGTT
1 TTTGCGGCGTTTATATACTAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGTT
*
14095858 AACTCTAAGTCATTGCGTTTTAGAGAAAACGGCATCGTCTCCATAAAAATTAAAACATTTTTGCG
66 AACTCTAAGTCATTGCGTTTTAGAGAAAACGGCATCGTCTCCATAAAAATTAAAACAATTTTGCG
*
14095923 GCGTTTACTAAAAGCGCCACTAAAAGTAAATAAGAAAACGAAGCTGTTTTCCTAAACAATTTCTG
131 GCGTTTACTAAAAGCGCCACTAAAAGTAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTCTG
14095988 TAC
196 TAC
*
14095991 TTTGTGGCGTTTATATACTAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGTT
1 TTTGCGGCGTTTATATACTAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGTT
14096056 AACTCTAAGTCATTGCGTTTTAGAGAAAACGGCATCGTCTCCATAAAAATTAAAACAATTTTGCG
66 AACTCTAAGTCATTGCGTTTTAGAGAAAACGGCATCGTCTCCATAAAAATTAAAACAATTTTGCG
14096121 GCGTTTACTAAAAGCGCCACTAAAAGTAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTCTG
131 GCGTTTACTAAAAGCGCCACTAAAAGTAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTCTG
14096186 TAC
196 TAC
* * *
14096189 TTTGCGGCGTTTATATACTAGCGCCACTAGTAATATGATCAAACGCTGTCGTTCCCCGATTAGTA
1 TTTGCGGCGTTTATATACTAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGTT
** * * * *
14096254 AACTAAAACTCATGGCGTTTTAGACAAAACGGCATCGTCTCCATAAAAATTAAAATAATTTTGCG
66 AACTCTAAGTCATTGCGTTTTAGAGAAAACGGCATCGTCTCCATAAAAATTAAAACAATTTTGCG
* * * *
14096319 GCGTGTACTAAAAGTGCCCACT-AAAG-ATAATAAGAAAACGGAGCCGTTTTCGTAAACAATTTC
131 GCGTTTACTAAAAGCG-CCACTAAAAGTA-AATAAGAAAACGAAGCCGTTTTCCTAAACAATTTC
* *
14096382 TATAA
194 TGTAC
*
14096387 ATTGCGGCGTTTA
1 TTTGCGGCGTTTA
14096400 CACATAAACG
Statistics
Matches: 384, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
197 1 0.00
198 378 0.98
199 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (198 bp):
TTTGCGGCGTTTATATACTAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGTT
AACTCTAAGTCATTGCGTTTTAGAGAAAACGGCATCGTCTCCATAAAAATTAAAACAATTTTGCG
GCGTTTACTAAAAGCGCCACTAAAAGTAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTCTG
TAC
Found at i:14096896 original size:18 final size:18
Alignment explanation
Indices: 14096868--14096915 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
14096858 AAAAATAAAA
14096868 ATTTTAGTTTTTTA-TTTC
1 ATTTTA-TTTTTTATTTTC
*
14096886 TTTTTATTTTTTATTTTC
1 ATTTTATTTTTTATTTTC
14096904 ATTTTATTTTTT
1 ATTTTATTTTTT
14096916 GTAATTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 7 0.26
18 20 0.74
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (18 bp):
ATTTTATTTTTTATTTTC
Found at i:14096981 original size:16 final size:14
Alignment explanation
Indices: 14096952--14096978 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14096942 TTTACAATTC
14096952 CAAATTATTATATT
1 CAAATTATTATATT
14096966 CAAATTATTATAT
1 CAAATTATTATAT
14096979 ATTGCATATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
CAAATTATTATATT
Found at i:14102456 original size:17 final size:17
Alignment explanation
Indices: 14102434--14102467 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14102424 CACTAACATT
*
14102434 AAAATGCAATGACAATA
1 AAAATGCAACGACAATA
14102451 AAAATGCAACGACAATA
1 AAAATGCAACGACAATA
14102468 TGCACAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.15, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAATGCAACGACAATA
Found at i:14107691 original size:21 final size:21
Alignment explanation
Indices: 14107662--14107708 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
14107652 AGTGATTGCG
14107662 TCTGATTCTAG-CGTGGATGCA
1 TCTGATTCT-GTCGTGGATGCA
* *
14107683 TCTGGTTCTGTTGTGGATGCA
1 TCTGATTCTGTCGTGGATGCA
14107704 TCTGA
1 TCTGA
14107709 GTGTGCTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.15, C:0.17, G:0.30, T:0.38
Consensus pattern (21 bp):
TCTGATTCTGTCGTGGATGCA
Done.