Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 45 of 75
Found at i:14345932 original size:21 final size:21
Alignment explanation
Indices: 14345907--14346000 Score: 135
Period size: 19 Copynumber: 4.7 Consensus size: 21
14345897 ATTTTTGAGG
14345907 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
14345928 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
14345947 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
14345968 ATAT--AATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
* *
14345987 -TTTGTAATCTTAGA
1 ATATGCAATCTTAGA
14346001 GATTTAATTT
Statistics
Matches: 68, Mismatches: 1, Indels: 9
0.87 0.01 0.12
Matches are distributed among these distances:
18 2 0.03
19 34 0.50
20 9 0.13
21 23 0.34
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:14345950 original size:40 final size:38
Alignment explanation
Indices: 14345906--14346000 Score: 145
Period size: 40 Copynumber: 2.4 Consensus size: 38
14345896 AATTTTTGAG
14345906 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATAT--AATCTTAGATAT
14345946 GATATGCAATCTTAGATATGATATATAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATATAATCTTAGATAT
* *
14345984 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
14346001 GATTTAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
38 14 0.27
39 12 0.23
40 26 0.50
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATATAATCTTAGATAT
Found at i:14349683 original size:11 final size:11
Alignment explanation
Indices: 14349662--14349699 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
14349652 AAAAAATTAA
14349662 AAAAGTATTTTT
1 AAAA-TATTTTT
*
14349674 AACATATTTTT
1 AAAATATTTTT
14349685 AAAATA-TTTT
1 AAAATATTTTT
14349695 AAAAT
1 AAAAT
14349700 TAAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.38
11 12 0.50
12 3 0.12
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (11 bp):
AAAATATTTTT
Found at i:14349720 original size:50 final size:51
Alignment explanation
Indices: 14349637--14349756 Score: 147
Period size: 50 Copynumber: 2.4 Consensus size: 51
14349627 GATCCATTTT
* * * *
14349637 TATTTTAAAAATTTTAAAAAATTAAAAAAGTATTTTTAACATATTTTTAAAA
1 TATTTTAAAAATTTAAAAAAAATAAAAAAGTATTTTAAAAATA-TTTTAAAA
14349689 TATTTT-AAAA-TTAAAAAAAATAAAAAAGTATTTTAAAAATATTTTAAAA
1 TATTTTAAAAATTTAAAAAAAATAAAAAAGTATTTTAAAAATATTTTAAAA
** *
14349738 T-TTAAAAAAAATTAAAAAA
1 TATTTTAAAAATTTAAAAAA
14349757 GTATGGGCCG
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
48 2 0.03
49 13 0.22
50 35 0.58
51 4 0.07
52 6 0.10
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (51 bp):
TATTTTAAAAATTTAAAAAAAATAAAAAAGTATTTTAAAAATATTTTAAAA
Found at i:14349732 original size:39 final size:41
Alignment explanation
Indices: 14349678--14349760 Score: 143
Period size: 39 Copynumber: 2.1 Consensus size: 41
14349668 ATTTTTAACA
*
14349678 TATTTTTAAAATATTTTAAAA-TTAAAAAAAA-TAAAAAAG
1 TATTTTAAAAATATTTTAAAATTTAAAAAAAATTAAAAAAG
14349717 TATTTTAAAAATATTTTAAAATTTAAAAAAAATTAAAAAAG
1 TATTTTAAAAATATTTTAAAATTTAAAAAAAATTAAAAAAG
14349758 TAT
1 TAT
14349761 GGGCCGTCGA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 20 0.49
40 10 0.24
41 11 0.27
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (41 bp):
TATTTTAAAAATATTTTAAAATTTAAAAAAAATTAAAAAAG
Found at i:14352213 original size:3 final size:3
Alignment explanation
Indices: 14352205--14352254 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
14352195 CACTCATCTA
14352205 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14352253 AA
1 AA
14352255 CACTTATACT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14354619 original size:22 final size:22
Alignment explanation
Indices: 14354594--14354635 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14354584 ATTAAAAATT
*
14354594 AAATTGAATAAAATTATATTTA
1 AAATTGAATAAAATAATATTTA
* *
14354616 AAATTTAATAACATAATATT
1 AAATTGAATAAAATAATATT
14354636 GTCTCATTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATTGAATAAAATAATATTTA
Found at i:14357666 original size:291 final size:292
Alignment explanation
Indices: 14357335--14357928 Score: 1163
Period size: 291 Copynumber: 2.0 Consensus size: 292
14357325 TTTATATATT
14357335 TTATAATTTATATTTATACATATACATTTGTATTATTATTTTTTAAATATGCATATATAAATACA
1 TTATAATTTATATTTATACATATACATTTGTATTATTATTTTTTAAATATGCATATATAAATACA
14357400 CACATATTTTTCTACATATTTTTATAGTTTATTGATTTCATCTATTGCATTTTTGTTTCACTCCA
66 CACATATTTTTCTACATATTTTTATAGTTTATTGATTTCATCTATTGCATTTTTGTTTCACTCCA
14357465 TGTTTATTTGTTTATTTGTGTATGTGTTCATTATAATTCGAAAAGAATGTCTTAATATTGCACCC
131 TGTTTATTTGTTTATTTGTGTATGTGTTCATTATAATTCGAAAAGAATGTCTTAATATTGCACCC
14357530 ATTTATTTGTTGTGATATGATAGATTTGTCTCTCCTATTATTTATTTCATTTACGTTGTTGTTCA
196 ATTTATTTGTTGTGATATGATAGATTTGTCTCTCCTATTATTTATTTCATTTACGTTGTTGTTCA
14357595 TATTATTTATGCTCACATTATCGTATCCATAG
261 TATTATTTATGCTCACATTATCGTATCCATAG
14357627 TTATAATTTATA-TTATACATATACATTTGTATTATTATTTTTTAAATATGCATATATAAATACA
1 TTATAATTTATATTTATACATATACATTTGTATTATTATTTTTTAAATATGCATATATAAATACA
14357691 CACATATTTTTCTACATATTTTTATAGTTTATTGATTTCATCTATTGCATTTTTGTTTCACTCCA
66 CACATATTTTTCTACATATTTTTATAGTTTATTGATTTCATCTATTGCATTTTTGTTTCACTCCA
14357756 TGTTTATTTGTTTATTTGTGTATGTGTTCATTATAATTCGAAAAGAATGTCTTAATATTGCACCC
131 TGTTTATTTGTTTATTTGTGTATGTGTTCATTATAATTCGAAAAGAATGTCTTAATATTGCACCC
14357821 ATTTATTTGTTGTGATATGATAGATTTGTCTCTCCTATTATTTATTTCATTTACGTTGTTGTTCA
196 ATTTATTTGTTGTGATATGATAGATTTGTCTCTCCTATTATTTATTTCATTTACGTTGTTGTTCA
14357886 TATTATTTATGCTCACATTATCGTATCCATAG
261 TATTATTTATGCTCACATTATCGTATCCATAG
* *
14357918 TTGTCATTTAT
1 TTATAATTTAT
14357929 CAATGCAACA
Statistics
Matches: 300, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
291 288 0.96
292 12 0.04
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (292 bp):
TTATAATTTATATTTATACATATACATTTGTATTATTATTTTTTAAATATGCATATATAAATACA
CACATATTTTTCTACATATTTTTATAGTTTATTGATTTCATCTATTGCATTTTTGTTTCACTCCA
TGTTTATTTGTTTATTTGTGTATGTGTTCATTATAATTCGAAAAGAATGTCTTAATATTGCACCC
ATTTATTTGTTGTGATATGATAGATTTGTCTCTCCTATTATTTATTTCATTTACGTTGTTGTTCA
TATTATTTATGCTCACATTATCGTATCCATAG
Found at i:14366655 original size:289 final size:290
Alignment explanation
Indices: 14366124--14366704 Score: 1155
Period size: 289 Copynumber: 2.0 Consensus size: 290
14366114 AAAAATAAAT
14366124 AATAACAAACATATAAATATTTTTAATTTAAAATTTATTTAGTAAATACAAATGAAAGAAAGGTT
1 AATAACAAACATATAAATATTTTTAATTTAAAATTTATTTAGTAAATACAAATGAAAGAAAGGTT
14366189 AAAGATGAAGGTAAGGAGTGGGCGTTTTAATAAGTTGGCAAGAGAAAATAGTGTAGTAATTTATG
66 AAAGATGAAGGTAAGGAGTGGGCGTTTTAATAAGTTGGCAAGAGAAAATAGTGTAGTAATTTATG
14366254 AGGAATTATACGTTGGGTGAGCGTGAAGATAAGAGCACGCTTACATTAGGTTTTAGGTGGAGTTG
131 AGGAATTATACGTTGGGTGAGCGTGAAGATAAGAGCACGCTTACATTAGGTTTTAGGTGGAGTTG
14366319 GCTGTAAAGTGAGGCAGGCACGTTGCACAACCATCTTAGCTTTGCTTGGGTTGGGTGAGTTTATC
196 GCTGTAAAGTGAGGCAGGCACGTTGCACAACCATCTTAGCTTTGCTTGGGTTGGGTGAGTTTATC
14366384 GACGACCGATCCTGCAAGTAAAAAATTGAA
261 GACGACCGATCCTGCAAGTAAAAAATTGAA
14366414 AATAACAAACA-ATAAATATTTTTAATTTAAAATTTATTTAGTAAATACAAATGAAAGAAAGGTT
1 AATAACAAACATATAAATATTTTTAATTTAAAATTTATTTAGTAAATACAAATGAAAGAAAGGTT
14366478 AAAGATGAAGGTAAGGAGTGGGCGTTTTAATAAGTTGGCAAGAGAAAATAGTGTAGTAATTTATG
66 AAAGATGAAGGTAAGGAGTGGGCGTTTTAATAAGTTGGCAAGAGAAAATAGTGTAGTAATTTATG
14366543 AGGAATTATACGTTGGGTGAGCGTGAAGATAAGAGCACGCTTACATTAGGTTTTAGGTGGAGTTG
131 AGGAATTATACGTTGGGTGAGCGTGAAGATAAGAGCACGCTTACATTAGGTTTTAGGTGGAGTTG
14366608 GCTGTAAAGTGAGGCAGGCACGTTGCACAACCATCTTAGCTTTGCTTGGGTTGGGTGAGTTTATC
196 GCTGTAAAGTGAGGCAGGCACGTTGCACAACCATCTTAGCTTTGCTTGGGTTGGGTGAGTTTATC
14366673 GACGACCGATCCTGCAAGTAAAAAATTGAA
261 GACGACCGATCCTGCAAGTAAAAAATTGAA
14366703 AA
1 AA
14366705 GGATCTCATC
Statistics
Matches: 291, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
289 280 0.96
290 11 0.04
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (290 bp):
AATAACAAACATATAAATATTTTTAATTTAAAATTTATTTAGTAAATACAAATGAAAGAAAGGTT
AAAGATGAAGGTAAGGAGTGGGCGTTTTAATAAGTTGGCAAGAGAAAATAGTGTAGTAATTTATG
AGGAATTATACGTTGGGTGAGCGTGAAGATAAGAGCACGCTTACATTAGGTTTTAGGTGGAGTTG
GCTGTAAAGTGAGGCAGGCACGTTGCACAACCATCTTAGCTTTGCTTGGGTTGGGTGAGTTTATC
GACGACCGATCCTGCAAGTAAAAAATTGAA
Found at i:14370739 original size:42 final size:42
Alignment explanation
Indices: 14370680--14370762 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
14370670 CTGAACTTTA
14370680 CCGAGAGAAAACAGTTGCTGGATTTTGTGACCACATTCAACG
1 CCGAGAGAAAACAGTTGCTGGATTTTGTGACCACATTCAACG
* * * *
14370722 CCGAGAGATACCAGTTGCTGGATTTTGTGGCTACATTCAAC
1 CCGAGAGAAAACAGTTGCTGGATTTTGTGACCACATTCAAC
14370763 AATGACAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (42 bp):
CCGAGAGAAAACAGTTGCTGGATTTTGTGACCACATTCAACG
Found at i:14379363 original size:18 final size:17
Alignment explanation
Indices: 14379340--14379373 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14379330 ACAGTTGACC
*
14379340 GGAAAGGAAAAGGAAAAA
1 GGAAA-GAAAAAGAAAAA
14379358 GGAAAGAAAAAGAAAA
1 GGAAAGAAAAAGAAAA
14379374 GAAGGGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (17 bp):
GGAAAGAAAAAGAAAAA
Found at i:14379383 original size:19 final size:18
Alignment explanation
Indices: 14379340--14379385 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
14379330 ACAGTTGACC
* *
14379340 GGAAAGGAAAAGGAAAAA
1 GGAAAGAAAAAGAAAAAA
14379358 GGAAAGAAAAAGAAAAGAA
1 GGAAAGAAAAAGAAAA-AA
*
14379377 GGGAAGAAA
1 GGAAAGAAA
14379386 TAAATGGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
GGAAAGAAAAAGAAAAAA
Found at i:14386198 original size:13 final size:13
Alignment explanation
Indices: 14386180--14386204 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14386170 TATATTTGTC
14386180 CTAGTGTCATGGA
1 CTAGTGTCATGGA
14386193 CTAGTGTCATGG
1 CTAGTGTCATGG
14386205 GTTGCGCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (13 bp):
CTAGTGTCATGGA
Found at i:14388267 original size:151 final size:151
Alignment explanation
Indices: 14388084--14388398 Score: 594
Period size: 151 Copynumber: 2.1 Consensus size: 151
14388074 TTTTAAATTT
14388084 TTTTTATAAAATAAATTTCAACATGAAAATAATTGTATACTTAATATAAATATTAAATAAGGTAC
1 TTTTTAT-AAA-AAATTTCAACATGAAAATAATTGTATACTTAATATAAATATTAAATAAGGTAC
14388149 AGTGAATTATAAATTATGGTTAAAAATATCATTTGACTTTAAAAGTACTTTTCCCAAATTCTAAC
64 AGTGAATTATAAATTATGGTTAAAAATATCATTTGACTTTAAAAGTACTTTTCCCAAATTCTAAC
14388214 TTTTGCGTTTGCATTGAAAAACA
129 TTTTGCGTTTGCATTGAAAAACA
14388237 TTTTTATAAAAAATTTCAACATGAAAATAATTGTATACTTAATATAAATATTAAATAAGGTACAG
1 TTTTTATAAAAAATTTCAACATGAAAATAATTGTATACTTAATATAAATATTAAATAAGGTACAG
14388302 TGAATTATAAATTATGGTTAAAAATATCATTTGACTTTAAAAGTACTTTTCCCAAATTCTAACTT
66 TGAATTATAAATTATGGTTAAAAATATCATTTGACTTTAAAAGTACTTTTCCCAAATTCTAACTT
14388367 TTGCGTTTGCATTGAAAAACA
131 TTGCGTTTGCATTGAAAAACA
* *
14388388 CTTTTGTAAAA
1 TTTTTATAAAA
14388399 GCATTTAGTT
Statistics
Matches: 160, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
151 150 0.94
152 3 0.02
153 7 0.04
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (151 bp):
TTTTTATAAAAAATTTCAACATGAAAATAATTGTATACTTAATATAAATATTAAATAAGGTACAG
TGAATTATAAATTATGGTTAAAAATATCATTTGACTTTAAAAGTACTTTTCCCAAATTCTAACTT
TTGCGTTTGCATTGAAAAACA
Found at i:14404849 original size:43 final size:43
Alignment explanation
Indices: 14404797--14404898 Score: 186
Period size: 43 Copynumber: 2.4 Consensus size: 43
14404787 AGATATGCTA
14404797 GTGTCTCAGGCCGTGTGGGTATTCAAAGTAGGGACACACGGCC
1 GTGTCTCAGGCCGTGTGGGTATTCAAAGTAGGGACACACGGCC
14404840 GTGTCTCAGGCCGTGTGGGTATTCAAAGTAGGGACACACGGCC
1 GTGTCTCAGGCCGTGTGGGTATTCAAAGTAGGGACACACGGCC
* *
14404883 GTGTCCCAGCCCGTGT
1 GTGTCTCAGGCCGTGT
14404899 CCAAATTAGG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.22
Consensus pattern (43 bp):
GTGTCTCAGGCCGTGTGGGTATTCAAAGTAGGGACACACGGCC
Found at i:14405624 original size:35 final size:35
Alignment explanation
Indices: 14405578--14405647 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
14405568 AGAGTAAGCT
*
14405578 TTAAAAGCTTAGTAAGTTCATATAACAAGAAATTA
1 TTAAAAGCTTAGAAAGTTCATATAACAAGAAATTA
*
14405613 TTAAAAGCTTAGAAAGTTCGTATAACAAGAAATTA
1 TTAAAAGCTTAGAAAGTTCATATAACAAGAAATTA
14405648 ACTTACCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.30
Consensus pattern (35 bp):
TTAAAAGCTTAGAAAGTTCATATAACAAGAAATTA
Found at i:14408726 original size:111 final size:112
Alignment explanation
Indices: 14408578--14408802 Score: 427
Period size: 111 Copynumber: 2.0 Consensus size: 112
14408568 TAACAATGCG
14408578 AAAACCGAATAAATGATCAAATTGAGCGGAACGTCGGATTTGAGTAGTTCTAATCAATGACAAGT
1 AAAACCGAATAAATGATCAAATTGAGCGGAACGTCGGATTTGAGTAGTTCTAATCAATGACAAGT
14408643 GATATGTGGTAGCTTTAGCTACAC-TTATCTGATCAATGACAAGTGAC
66 GATATGTGGTAGCTTTAGCTACACTTTA-CTGATCAATGACAAGTGAC
14408690 AAAACCGAAT-AATGATCAAATTGAGCGGAACGTCGGATTTGAGTAGTTCTAATCAATGACAAGT
1 AAAACCGAATAAATGATCAAATTGAGCGGAACGTCGGATTTGAGTAGTTCTAATCAATGACAAGT
14408754 GATATGTGGTAGCTTTAGCTACACTTTACTGATCAATGACAAGTGAC
66 GATATGTGGTAGCTTTAGCTACACTTTACTGATCAATGACAAGTGAC
14408801 AA
1 AA
14408803 GTGATAAGTG
Statistics
Matches: 112, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
111 99 0.88
112 13 0.12
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (112 bp):
AAAACCGAATAAATGATCAAATTGAGCGGAACGTCGGATTTGAGTAGTTCTAATCAATGACAAGT
GATATGTGGTAGCTTTAGCTACACTTTACTGATCAATGACAAGTGAC
Found at i:14414268 original size:73 final size:73
Alignment explanation
Indices: 14414149--14414295 Score: 285
Period size: 73 Copynumber: 2.0 Consensus size: 73
14414139 GCAATCCCGA
14414149 TACAAAGTCCATAGTAATTCTTTCCCAGTTCCATTCCAATACCGTGACTGGTTGTAATAATCCCG
1 TACAAAGTCCATAGTAATTCTTTCCCAGTTCCATTCCAATACCGTGACTGGTTGTAATAATCCCG
14414214 AAGGTACC
66 AAGGTACC
*
14414222 TACAAAGTCCATAGTAATTCTTTCCCAGTTCCATTCCAATATCGTGACTGGTTGTAATAATCCCG
1 TACAAAGTCCATAGTAATTCTTTCCCAGTTCCATTCCAATACCGTGACTGGTTGTAATAATCCCG
14414287 AAGGTACC
66 AAGGTACC
14414295 T
1 T
14414296 GATGTTCAGC
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (73 bp):
TACAAAGTCCATAGTAATTCTTTCCCAGTTCCATTCCAATACCGTGACTGGTTGTAATAATCCCG
AAGGTACC
Found at i:14414645 original size:104 final size:104
Alignment explanation
Indices: 14414483--14414692 Score: 393
Period size: 104 Copynumber: 2.0 Consensus size: 104
14414473 ATTCTTAGGA
14414483 ACACAAACTCTGCCTCTGAATAACAGACAATCATTAGGTCCAATCTGAAATTTTGAATCAGAAGT
1 ACACAAACTCTGCCTCTGAATAACAGACAATCATTAGGTCCAATCTGAAATTTTGAATCAGAAGT
14414548 TATTTCACATTATACCCGTTTAGCTTACAATTCATTATC
66 TATTTCACATTATACCCGTTTAGCTTACAATTCATTATC
* *
14414587 ACACAAACTCTGCCTCTGAATAACAGACAATCATTAGGTCCAATTTGAATTTTTGAATCAGAAGT
1 ACACAAACTCTGCCTCTGAATAACAGACAATCATTAGGTCCAATCTGAAATTTTGAATCAGAAGT
*
14414652 TATTTCACATTATACCCGTTTAGCTTGCAATTCATTATC
66 TATTTCACATTATACCCGTTTAGCTTACAATTCATTATC
14414691 AC
1 AC
14414693 TTTTATTTGC
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.33
Consensus pattern (104 bp):
ACACAAACTCTGCCTCTGAATAACAGACAATCATTAGGTCCAATCTGAAATTTTGAATCAGAAGT
TATTTCACATTATACCCGTTTAGCTTACAATTCATTATC
Found at i:14419302 original size:25 final size:25
Alignment explanation
Indices: 14419268--14419339 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
14419258 AGTCCTCTCT
* *
14419268 CGAGCCATATAATGGGAAGCTTATC
1 CGAGCTATATAACGGGAAGCTTATC
* *
14419293 CGAGCTATATAACAGGAGGCTTATC
1 CGAGCTATATAACGGGAAGCTTATC
14419318 C-AGGCTATATAACGGGAAGCTT
1 CGA-GCTATATAACGGGAAGCTT
14419340 GGGAGAGCTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (25 bp):
CGAGCTATATAACGGGAAGCTTATC
Found at i:14419702 original size:21 final size:21
Alignment explanation
Indices: 14419677--14419718 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14419667 TAAATTTAAC
14419677 TCAATTTAATAAAATTCACAT
1 TCAATTTAATAAAATTCACAT
* **
14419698 TCAATTTCATCCAATTCACAT
1 TCAATTTAATAAAATTCACAT
14419719 CTTATGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTTAATAAAATTCACAT
Found at i:14420185 original size:68 final size:66
Alignment explanation
Indices: 14420088--14420219 Score: 210
Period size: 68 Copynumber: 2.0 Consensus size: 66
14420078 ACGATATGAG
*
14420088 AAATATAAAAATTACTAAAAACCATGATCTGGAATAAGAGAATACTTACCAAATTAAGCTAAATA
1 AAATATAAAAATTACTAAAAACCACGATCTGGAATAA-A-AATACTTACCAAATTAAGCTAAATA
14420153 AAT
64 AAT
** *
14420156 AAATATAAAAATTACTAAAAATTACGATCTGGGATAAAAATACTTACCAAATTAAGCTAAATAA
1 AAATATAAAAATTACTAAAAACCACGATCTGGAATAAAAATACTTACCAAATTAAGCTAAATAA
14420220 TCTTGCTTGA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
66 26 0.43
67 1 0.02
68 33 0.55
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.26
Consensus pattern (66 bp):
AAATATAAAAATTACTAAAAACCACGATCTGGAATAAAAATACTTACCAAATTAAGCTAAATAAA
T
Found at i:14421366 original size:49 final size:49
Alignment explanation
Indices: 14421294--14421389 Score: 192
Period size: 49 Copynumber: 2.0 Consensus size: 49
14421284 CCGGTGTGCG
14421294 CATTTTGAATAACCCCCCATTGAGGGGTTAGTTTAATCGCTTTTGTTCA
1 CATTTTGAATAACCCCCCATTGAGGGGTTAGTTTAATCGCTTTTGTTCA
14421343 CATTTTGAATAACCCCCCATTGAGGGGTTAGTTTAATCGCTTTTGTT
1 CATTTTGAATAACCCCCCATTGAGGGGTTAGTTTAATCGCTTTTGTT
14421390 TAATCTTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.40
Consensus pattern (49 bp):
CATTTTGAATAACCCCCCATTGAGGGGTTAGTTTAATCGCTTTTGTTCA
Found at i:14422788 original size:179 final size:180
Alignment explanation
Indices: 14422589--14422949 Score: 715
Period size: 179 Copynumber: 2.0 Consensus size: 180
14422579 TTTATAATAT
14422589 ATTAATTAATTAATTAATTAAAATATGTAATGACTATAGATCTAGCTGTCACTCAAATCAGATAA
1 ATTAATTAATTAATTAATTAAAATATGTAATGACTATAGATCTAGCTGTCACTCAAATCAGATAA
14422654 TAAAGTCTAATTAAATAATAATAAATAAATTTCCAAGAATATAAAACAAACAGGATTTGAAAGCC
66 TAAAGTCTAATTAAATAATAATAAATAAATTTCCAAGAATATAAAACAAACAGGATTTGAAAGCC
14422719 AATGCATCAAAAAATAACATAGGTCAACACTCCGCGGCCATACGTACAAA
131 AATGCATCAAAAAATAACATAGGTCAACACTCCGCGGCCATACGTACAAA
14422769 ATTAATTAA-TAATTAATTAAAATATGTAATGACTATAGATCTAGCTGTCACTCAAATCAGATAA
1 ATTAATTAATTAATTAATTAAAATATGTAATGACTATAGATCTAGCTGTCACTCAAATCAGATAA
14422833 TAAAGTCTAATTAAATAATAATAAATAAATTTCCAAGAATATAAAACAAACAGGATTTGAAAGCC
66 TAAAGTCTAATTAAATAATAATAAATAAATTTCCAAGAATATAAAACAAACAGGATTTGAAAGCC
14422898 AATGCATCAAAAAATAACATAGGTCAACACTCCGCGGCCATACGTACAAA
131 AATGCATCAAAAAATAACATAGGTCAACACTCCGCGGCCATACGTACAAA
14422948 AT
1 AT
14422950 AAAATTTATT
Statistics
Matches: 181, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
179 172 0.95
180 9 0.05
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.27
Consensus pattern (180 bp):
ATTAATTAATTAATTAATTAAAATATGTAATGACTATAGATCTAGCTGTCACTCAAATCAGATAA
TAAAGTCTAATTAAATAATAATAAATAAATTTCCAAGAATATAAAACAAACAGGATTTGAAAGCC
AATGCATCAAAAAATAACATAGGTCAACACTCCGCGGCCATACGTACAAA
Found at i:14430716 original size:74 final size:73
Alignment explanation
Indices: 14430587--14430730 Score: 207
Period size: 74 Copynumber: 2.0 Consensus size: 73
14430577 ATCGGATTTG
* * *
14430587 AAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTTTTCTTAATTCCTAAGATCGTTTAAAAC
1 AAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTCAATTCCCAAGATCGTTTAAAAC
14430652 TTGAGAAA
66 TTGAGAAA
* ** * *
14430660 AAAAAGGGGATCATGCCTAGTAAGTTAGGACATGATCTCTTCTCGATTCCCGAGATCGTTTAAAA
1 AAAAA-GGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTCAATTCCCAAGATCGTTTAAAA
14430725 CTTGAG
65 CTTGAG
14430731 TTTGAAAAGA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
73 5 0.08
74 57 0.92
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (73 bp):
AAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTCAATTCCCAAGATCGTTTAAAAC
TTGAGAAA
Found at i:14439982 original size:17 final size:17
Alignment explanation
Indices: 14439960--14440014 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
14439950 ATATAGGTAA
14439960 AAATATAATGATATTTG
1 AAATATAATGATATTTG
* * * *
14439977 AAATAT-TTCACATAT-
1 AAATATAATGATATTTG
*
14439992 AAAAATAATGATATTTG
1 AAATATAATGATATTTG
14440009 AAATAT
1 AAATAT
14440015 TTTTTTTATA
Statistics
Matches: 26, Mismatches: 10, Indels: 4
0.65 0.25 0.10
Matches are distributed among these distances:
15 5 0.19
16 10 0.38
17 11 0.42
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (17 bp):
AAATATAATGATATTTG
Found at i:14440003 original size:32 final size:32
Alignment explanation
Indices: 14439959--14440045 Score: 111
Period size: 32 Copynumber: 2.7 Consensus size: 32
14439949 AATATAGGTA
14439959 AAAATATAATGATATTTGAAATATTTCACATAT
1 AAAA-ATAATGATATTTGAAATATTTCACATAT
****
14439992 AAAAATAATGATATTTGAAATATTTTTTTTAT
1 AAAAATAATGATATTTGAAATATTTCACATAT
* *
14440024 AAAAATAATGTTATTAGAAATA
1 AAAAATAATGATATTTGAAATA
14440046 ATGATTTTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 44 0.92
33 4 0.08
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (32 bp):
AAAAATAATGATATTTGAAATATTTCACATAT
Found at i:14440054 original size:32 final size:32
Alignment explanation
Indices: 14439989--14440055 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
14439979 ATATTTCACA
* * **
14439989 TATAAAAATAATGATATTTGAAATATTTTTTT
1 TATAAAAATAATGATATTAGAAATAATGATTT
*
14440021 TATAAAAATAATGTTATTAGAAATAATGATTT
1 TATAAAAATAATGATATTAGAAATAATGATTT
14440053 TAT
1 TAT
14440056 TTTATAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (32 bp):
TATAAAAATAATGATATTAGAAATAATGATTT
Found at i:14440951 original size:42 final size:42
Alignment explanation
Indices: 14440887--14440971 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
14440877 AATAGATGAT
** *
14440887 ATTTTTTAATGTAATTCGGATTCACTAATTCTACATCTACGG
1 ATTTTTTAACATAATTCAGATTCACTAATTCTACATCTACGG
14440929 ATTTTTTAACATAATTCAGATTCACTAATTCTACATCTACGG
1 ATTTTTTAACATAATTCAGATTCACTAATTCTACATCTACGG
14440971 A
1 A
14440972 GCCTTACTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (42 bp):
ATTTTTTAACATAATTCAGATTCACTAATTCTACATCTACGG
Found at i:14442877 original size:35 final size:35
Alignment explanation
Indices: 14442831--14442902 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
14442821 ATTGGCTCAC
14442831 TAGTTATCTAATGTTTAACTAATACTAAGCAGTAT
1 TAGTTATCTAATGTTTAACTAATACTAAGCAGTAT
*
14442866 TAGTTATCTAATGTTTAATTAATACTAAGCAGTAT
1 TAGTTATCTAATGTTTAACTAATACTAAGCAGTAT
14442901 TA
1 TA
14442903 CGCGGTTGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.42
Consensus pattern (35 bp):
TAGTTATCTAATGTTTAACTAATACTAAGCAGTAT
Found at i:14444911 original size:25 final size:25
Alignment explanation
Indices: 14444851--14444915 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
14444841 GTGAGCCATG
*
14444851 TAACGGGAAGCTCATTTGAGTTGTA
1 TAACGGGAAGCTCATTCGAGTTGTA
* **
14444876 TAATGAAAAGCTCATTCGAGTTGTA
1 TAACGGGAAGCTCATTCGAGTTGTA
14444901 TAACGGGAAGCTCAT
1 TAACGGGAAGCTCAT
14444916 AAGAGCCGCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (25 bp):
TAACGGGAAGCTCATTCGAGTTGTA
Found at i:14445008 original size:25 final size:24
Alignment explanation
Indices: 14444904--14445044 Score: 83
Period size: 25 Copynumber: 5.8 Consensus size: 24
14444894 AGTTGTATAA
*
14444904 CGGGAAGCTCATAAGAGCCGCA-AT
1 CGGGAAGCTCATAAGAGCC-AATAT
*
14444928 CGGGAAGTTC--AAGCAAGCCAATAT
1 CGGGAAGCTCATAAG--AGCCAATAT
* *** *
14444952 TGGGAAGCTCCGGAGAGCCATTAAT
1 CGGGAAGCTCATAAGAGCCAAT-AT
** *
14444977 CAAGAAGCTCATAAGAGCCAGCTAT
1 CGGGAAGCTCATAAGAGCCA-ATAT
**
14445002 CGGGAAGCTCCGAAGAGCCATATAT
1 CGGGAAGCTCATAAGAGCCA-ATAT
14445027 CGGGACA-CTCATAAGAGC
1 CGGGA-AGCTCATAAGAGC
14445045 TACGGTGTGT
Statistics
Matches: 88, Mismatches: 21, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
22 3 0.03
23 1 0.01
24 29 0.33
25 51 0.58
26 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.27, T:0.16
Consensus pattern (24 bp):
CGGGAAGCTCATAAGAGCCAATAT
Found at i:14445956 original size:109 final size:108
Alignment explanation
Indices: 14445645--14445963 Score: 367
Period size: 109 Copynumber: 2.9 Consensus size: 108
14445635 TGGATTAAGA
* * * * *
14445645 TTTAAGAGAATATTTGGCTATTTGGTCAAATG-GAAAAATCGAAACCCAGCGCATTAGGGCACGT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCTAGCACATTAGGGCACGT
* * * * *
14445709 TTC-CTTAGATTTCCAAACGTAAAATATTACCTTACTTCGAAATT
66 TTCTC-GA-ATTTCCAAACGCAAAATATTGCCTTATTTCAAAATT
* * * *
14445753 TTTAAAAGGATATTTAG-TCATTTGGTTGAATGAGAAAAATC-AACACCTAGCACCTTAGGGCAT
1 TTTAAAAGGATATTTGGCT-ATTTGGTCGAATGAGAAAAATCGAA-ACCTAGCACATTAGGGCAC
* *
14445816 GTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATT
64 G-TTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTCAAAATT
* *
14445862 TTTAAAAGGATATTTGGCTATTAGGTCGAACGAGAAAAATCGAAACCTAGCACATTAGGGCACGC
1 TTTAAAAGGATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCTAGCACATTAGGGCACG-
* * *
14445927 TTTCTCGAACTTCCAAATGCGAAATATTGCCTTATTT
65 TTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTT
14445964 AGAAAAAATT
Statistics
Matches: 177, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
107 1 0.01
108 27 0.15
109 140 0.79
110 8 0.05
111 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Consensus pattern (108 bp):
TTTAAAAGGATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCTAGCACATTAGGGCACGT
TTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTCAAAATT
Found at i:14446218 original size:19 final size:18
Alignment explanation
Indices: 14446183--14446244 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
14446173 AATTAATTAA
14446183 AAAAATTATAAAAATATG
1 AAAAATTATAAAAATATG
*
14446201 AAAAATATATATACATATAT-
1 AAAAAT-TATA-A-AAATATG
* *
14446221 ATAAAATTATGAAAATACG
1 A-AAAATTATAAAAATATG
14446240 AAAAA
1 AAAAA
14446245 AAAACATATG
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
18 14 0.40
19 6 0.17
20 5 0.14
21 10 0.29
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAAATTATAAAAATATG
Found at i:14454532 original size:16 final size:17
Alignment explanation
Indices: 14454497--14454536 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
14454487 TGCGTCATTA
*
14454497 TGTGTCTTGTTATTGCT
1 TGTGTCTTGATATTGCT
*
14454514 TGTGTCTT-ATATTGTT
1 TGTGTCTTGATATTGCT
14454530 TGTGTCT
1 TGTGTCT
14454537 AATGTTCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.07, C:0.10, G:0.23, T:0.60
Consensus pattern (17 bp):
TGTGTCTTGATATTGCT
Found at i:14458497 original size:43 final size:42
Alignment explanation
Indices: 14458435--14458564 Score: 153
Period size: 42 Copynumber: 3.1 Consensus size: 42
14458425 AACTCGCACA
* * * *
14458435 ATGCC-ATATCCCAGATATGGTCTTACATGCTATCATATATCG
1 ATGCCAATAGCCCAGCTATGGTCTTACACG-AATCATATATCG
14458477 ATGCCAATAGCCCAGCTATGGTCTTACACGAATC-TCATATCG
1 ATGCCAATAGCCCAGCTATGGTCTTACACGAATCAT-ATATCG
14458519 ATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAATCATATA-CG
1 ATGCCAATAG-CCCAG-CTATGGTCTTACACGAATCATATATCG
14458560 ATGCC
1 ATGCC
14458565 NNNNNNNNNN
Statistics
Matches: 79, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
41 9 0.11
42 47 0.59
43 23 0.29
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCAATAGCCCAGCTATGGTCTTACACGAATCATATATCG
Found at i:14465652 original size:2 final size:2
Alignment explanation
Indices: 14465647--14465690 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
14465637 ATATATATAT
14465647 AG AG AG AG AG AG AG AG AG AG A- AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14465688 AG A
1 AG A
14465691 CTTAAATGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14476210 original size:2 final size:2
Alignment explanation
Indices: 14476167--14476194 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14476157 TTGTTGCTTT
14476167 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14476195 AATAGTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14481219 original size:39 final size:39
Alignment explanation
Indices: 14481176--14481250 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
14481166 TGAATGAAAA
* *
14481176 GATGAAGAGCTCGTTGGCCCCCAGGATACTAACGCTGAG
1 GATGAAGAGCTCGTTGGCCCCCAAGATACCAACGCTGAG
14481215 GATGAAGAGCTCGTTGGCCCCCAAGATACCAACGCT
1 GATGAAGAGCTCGTTGGCCCCCAAGATACCAACGCT
14481251 AATTCATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.27, C:0.28, G:0.28, T:0.17
Consensus pattern (39 bp):
GATGAAGAGCTCGTTGGCCCCCAAGATACCAACGCTGAG
Found at i:14481326 original size:13 final size:13
Alignment explanation
Indices: 14481308--14481332 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14481298 CCAAGTTTTA
14481308 TTTGATAAAATAT
1 TTTGATAAAATAT
14481321 TTTGATAAAATA
1 TTTGATAAAATA
14481333 AATTGAAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
TTTGATAAAATAT
Found at i:14481471 original size:22 final size:22
Alignment explanation
Indices: 14481445--14481493 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
14481435 TTTCGAAACA
* *
14481445 ATTTTAAAATCAAGTGAAAATG
1 ATTTTAAAACCAAGTCAAAATG
14481467 ATTTT--AACCAAGTCAAAATG
1 ATTTTAAAACCAAGTCAAAATG
14481487 ATTTTAA
1 ATTTTAA
14481494 TTAATTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 18 0.78
22 5 0.22
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (22 bp):
ATTTTAAAACCAAGTCAAAATG
Found at i:14481505 original size:20 final size:20
Alignment explanation
Indices: 14481455--14481493 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
14481445 ATTTTAAAAT
*
14481455 CAAGTGAAAATGATTTTAAC
1 CAAGTCAAAATGATTTTAAC
14481475 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
14481494 TTAATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (20 bp):
CAAGTCAAAATGATTTTAAC
Found at i:14482863 original size:131 final size:131
Alignment explanation
Indices: 14482629--14482866 Score: 334
Period size: 131 Copynumber: 1.8 Consensus size: 131
14482619 AGTGTTTGGA
* **
14482629 AAATCAGCTAACACAAATGAGATTGTTCATGATATTAAATCTAATAAACTTAGGTTGTGATCTTA
1 AAATCAGCTAACACAAATGAGATTGTTCATGATACTAAATCTAATAAACTTAGGTTGCAATCTTA
* * * *
14482694 AATCAATGAACTTTAATGATGTCAACTGCGATCTTAAATCAATAAGCTGTTTGGAGCAGTGATAG
66 AATCAATGAACCTTAACGATATCAACTACGATCTTAAATCAATAAGCTGTTTGGAGCAGTGATAG
14482759 T
131 T
* * *
14482760 AAATCAGCTAACTCAAAT-ATGATTGTTGATGATACTAAATCTAATAAACTTCGGTTGCAATCTT
1 AAATCAGCTAACACAAATGA-GATTGTTCATGATACTAAATCTAATAAACTTAGGTTGCAATCTT
* * * *
14482824 AAATCAGTGAACCTTAACGATATTAGCTATGATCTTAAATCAA
65 AAATCAATGAACCTTAACGATATCAACTACGATCTTAAATCAA
14482867 CGAATTGTTT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
130 1 0.01
131 91 0.99
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (131 bp):
AAATCAGCTAACACAAATGAGATTGTTCATGATACTAAATCTAATAAACTTAGGTTGCAATCTTA
AATCAATGAACCTTAACGATATCAACTACGATCTTAAATCAATAAGCTGTTTGGAGCAGTGATAG
T
Found at i:14482894 original size:131 final size:131
Alignment explanation
Indices: 14482629--14482901 Score: 325
Period size: 131 Copynumber: 2.1 Consensus size: 131
14482619 AGTGTTTGGA
* **
14482629 AAATCAGCTAACACAAATGAGATTGTTCATGATATTAAATCTAATAAACTTAGGTTGTGATCTTA
1 AAATCAGCTAACACAAATGAGATTGTTCATGATACTAAATCTAATAAACTTAGGTTGCAATCTTA
* * * * * **
14482694 AATCAATGAACTTTAATGATGTCAACTGCGATCTTAAATCAATAAGCTGTTTGGAGCAGTGATAG
66 AATCAATGAACCTTAACGATATCAACTACGATCTTAAATCAAGAAGCTGTTTGGAGCAGCAATAG
14482759 T
131 T
* * *
14482760 AAATCAGCTAACTCAAAT-ATGATTGTTGATGATACTAAATCTAATAAACTTCGGTTGCAATCTT
1 AAATCAGCTAACACAAATGA-GATTGTTCATGATACTAAATCTAATAAACTTAGGTTGCAATCTT
* * * * * *
14482824 AAATCAGTGAACCTTAACGATATTAGCTATGATCTTAAATCAACGAA-TTGTTTGGAGTAGCAAT
65 AAATCAATGAACCTTAACGATATCAACTACGATCTTAAATCAA-GAAGCTGTTTGGAGCAGCAAT
*
14482888 ATT
129 AGT
*
14482891 AAATTAGCTAA
1 AAATCAGCTAA
14482902 AGCAATATTA
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
130 1 0.01
131 116 0.97
132 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (131 bp):
AAATCAGCTAACACAAATGAGATTGTTCATGATACTAAATCTAATAAACTTAGGTTGCAATCTTA
AATCAATGAACCTTAACGATATCAACTACGATCTTAAATCAAGAAGCTGTTTGGAGCAGCAATAG
T
Found at i:14482907 original size:20 final size:20
Alignment explanation
Indices: 14482882--14482921 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14482872 TGTTTGGAGT
14482882 AGCAATATTAAATTAGCTAA
1 AGCAATATTAAATTAGCTAA
14482902 AGCAATATTAAATTAGCTAA
1 AGCAATATTAAATTAGCTAA
14482922 CTTAAATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
AGCAATATTAAATTAGCTAA
Found at i:14483010 original size:151 final size:151
Alignment explanation
Indices: 14482759--14483052 Score: 381
Period size: 151 Copynumber: 1.9 Consensus size: 151
14482749 GCAGTGATAG
* * * *
14482759 TAAATCAGCTAACTCAAATATGATTGTTGATGATACTAAATCTAATAAACTTCGGTTGCAATCTT
1 TAAATCAGCTAACTCAAATAAGATTGTTCATGATACTAAATCAAATAAACTTAGGTTGCAATCTT
** * ** * *
14482824 AAATCAGTGAACCTTAACGATATTAGCTATGATCTTAAATCAACGAATTGTTTGGAGTAGCAATA
66 AAATCAACGAACCTTAACGACATTAGCTACAATCTTAAATCAACGAACTGTTTGAAGTAGCAATA
*
14482889 TTAAATTAGCTAAAGCAATAT
131 TTAAATCAGCTAAAGCAATAT
* * ** * **
14482910 TAAATTAGCTAACTTAAATAAGATTGTTCATGATTTTAAATCAAATTAACTTAGGTTGTGATCTT
1 TAAATCAGCTAACTCAAATAAGATTGTTCATGATACTAAATCAAATAAACTTAGGTTGCAATCTT
* * * *
14482975 AAATCAACGAACCTTAATGACATTAGCTGCAATCTTAAATCAACGAGCTGTTTGAAGTAGCGATA
66 AAATCAACGAACCTTAACGACATTAGCTACAATCTTAAATCAACGAACTGTTTGAAGTAGCAATA
14483040 TTAAATCAGCTAA
131 TTAAATCAGCTAA
14483053 CTCAAATAAG
Statistics
Matches: 120, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
151 120 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (151 bp):
TAAATCAGCTAACTCAAATAAGATTGTTCATGATACTAAATCAAATAAACTTAGGTTGCAATCTT
AAATCAACGAACCTTAACGACATTAGCTACAATCTTAAATCAACGAACTGTTTGAAGTAGCAATA
TTAAATCAGCTAAAGCAATAT
Found at i:14483144 original size:131 final size:131
Alignment explanation
Indices: 14482902--14483206 Score: 376
Period size: 131 Copynumber: 2.3 Consensus size: 131
14482892 AATTAGCTAA
* * * ** *
14482902 AGCAATATTAAATTAGCTAACTTAAATAAGATTGTTCATGATTTTAAATCAAATTAACTTAGGTT
1 AGCAATATTAAATCAGCTAACTTAAATAAGATTGTTCATGATATTAAATCAAATGAACTTAAATA
** * * * *
14482967 GTGATCTTAAATCAACGAACCTTAATGACATTAGCTGCAATCTTAAATCAACGAGCTGTTTGAAG
66 GCAATCTTAAATCAACGAACCTTAACGACATCAACTGCAATATTAAATCAACGAGCTGTTTGAAG
14483032 T
131 T
* * **
14483033 AGCGATATTAAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATTGAATGAACTTAAATA
1 AGCAATATTAAATCAGCTAACTTAAATAAGATTGTTCATGATATTAAATCAAATGAACTTAAATA
* * * * * ** * *
14483098 GCAATCTTAAATTAGCGAACCTTAACGATATCAACTGTAATATTAAATTAGTGAGTTGTTTGGAG
66 GCAATCTTAAATCAACGAACCTTAACGACATCAACTGCAATATTAAATCAACGAGCTGTTTGAAG
14483163 T
131 T
*
14483164 AGCAATATTAAATCAGCTAACTTAAATAAGATTATTCATGATA
1 AGCAATATTAAATCAGCTAACTTAAATAAGATTGTTCATGATA
14483207 GATAAAGTAA
Statistics
Matches: 146, Mismatches: 28, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
131 146 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (131 bp):
AGCAATATTAAATCAGCTAACTTAAATAAGATTGTTCATGATATTAAATCAAATGAACTTAAATA
GCAATCTTAAATCAACGAACCTTAACGACATCAACTGCAATATTAAATCAACGAGCTGTTTGAAG
T
Found at i:14483159 original size:282 final size:282
Alignment explanation
Indices: 14482629--14483183 Score: 734
Period size: 282 Copynumber: 2.0 Consensus size: 282
14482619 AGTGTTTGGA
* *
14482629 AAATCAGCTAACACAAATGAGATTGTTCATGATATTAAATCTAATAAACTTAGGTTGTGATCTTA
1 AAATCAGCTAACACAAATAAGATTGTTCATGATATTAAATCAAATAAACTTAGGTTGTGATCTTA
* * ** * * * *
14482694 AATCAATGAACTTTAATGATGTCAACTGCGATCTTAAATCAATAAGCTGTTTGGAGCAGTGATAG
66 AATCAACGAACCTTAATGACATCAACTGCAATCTTAAATCAACAAGCTGTTTGAAGCAGCGATAG
* * *** *
14482759 TAAATCAGCTAACTCAAATATGATTGTTGATGATACTAAATCTAATAAACTTCGGTTGCAATCTT
131 TAAATCAGCTAACTCAAATAAGATTGTTCATGATACTAAATCTAATAAACTTAAATAGCAATCTT
* * * * *
14482824 AAATCAGTGAACCTTAACGATATTAGCTATGATCTTAAATCAACGAATTGTTTGGAGTAGCAATA
196 AAATCAGCGAACCTTAACGATATCAACTATAATATTAAATCAACGAATTGTTTGGAGTAGCAATA
*
14482889 TTAAATTAGCTAAAGCAATATT
261 TTAAATCAGCTAAAGCAATATT
* ** * *
14482911 AAATTAGCTAACTTAAATAAGATTGTTCATGATTTTAAATCAAATTAACTTAGGTTGTGATCTTA
1 AAATCAGCTAACACAAATAAGATTGTTCATGATATTAAATCAAATAAACTTAGGTTGTGATCTTA
* * * * *
14482976 AATCAACGAACCTTAATGACATTAGCTGCAATCTTAAATCAACGAGCTGTTTGAAGTAGCGATAT
66 AATCAACGAACCTTAATGACATCAACTGCAATCTTAAATCAACAAGCTGTTTGAAGCAGCGATAG
* *
14483041 TAAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAAT-TGAATGAACTTAAATAGCAATCT
131 TAAATCAGCTAACTCAAATAAGATTGTTCATGATACTAAATCT-AATAAACTTAAATAGCAATCT
* * * ** *
14483105 TAAATTAGCGAACCTTAACGATATCAACTGTAATATTAAATTAGTGAGTTGTTTGGAGTAGCAAT
195 TAAATCAGCGAACCTTAACGATATCAACTATAATATTAAATCAACGAATTGTTTGGAGTAGCAAT
14483170 ATTAAATCAGCTAA
260 ATTAAATCAGCTAA
14483184 CTTAAATAAG
Statistics
Matches: 232, Mismatches: 40, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
281 1 0.00
282 231 1.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (282 bp):
AAATCAGCTAACACAAATAAGATTGTTCATGATATTAAATCAAATAAACTTAGGTTGTGATCTTA
AATCAACGAACCTTAATGACATCAACTGCAATCTTAAATCAACAAGCTGTTTGAAGCAGCGATAG
TAAATCAGCTAACTCAAATAAGATTGTTCATGATACTAAATCTAATAAACTTAAATAGCAATCTT
AAATCAGCGAACCTTAACGATATCAACTATAATATTAAATCAACGAATTGTTTGGAGTAGCAATA
TTAAATCAGCTAAAGCAATATT
Found at i:14487494 original size:41 final size:41
Alignment explanation
Indices: 14487445--14487588 Score: 166
Period size: 41 Copynumber: 3.5 Consensus size: 41
14487435 ACTACACTTG
* *
14487445 CACGAAGCCTACTAGGCTCAAGGCCTGATTTC-ATACACCGA
1 CACGAAGCCTACTAGGCTCAAGGCCTGA-ATCGTTACACCGA
* * * *
14487486 CATGAAGCCTGCTAGGGC-CAGGGCCTGAATCGTTACACCGG
1 CACGAAGCCTACTA-GGCTCAAGGCCTGAATCGTTACACCGA
* * *
14487527 TACGAGGCCTGCTAGGCTCAAGGCCTGAATCGTTACACCGA
1 CACGAAGCCTACTAGGCTCAAGGCCTGAATCGTTACACCGA
*
14487568 CACGAAGCCTACTAGGTTCAA
1 CACGAAGCCTACTAGGCTCAA
14487589 AACCCAATAC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
40 5 0.06
41 77 0.91
42 3 0.04
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (41 bp):
CACGAAGCCTACTAGGCTCAAGGCCTGAATCGTTACACCGA
Found at i:14490431 original size:6 final size:6
Alignment explanation
Indices: 14490413--14490442 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
14490403 GACTATAACA
14490413 TCCATT T-CATT TCCATT TCCATT TCCATT T
1 TCCATT TCCATT TCCATT TCCATT TCCATT T
14490443 TCATATCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (6 bp):
TCCATT
Found at i:14490435 original size:17 final size:17
Alignment explanation
Indices: 14490413--14490476 Score: 60
Period size: 17 Copynumber: 3.7 Consensus size: 17
14490403 GACTATAACA
14490413 TCCATTTCATTTCCATT
1 TCCATTTCATTTCCATT
* *
14490430 TCCATTTCCATTTTCATA
1 TCCATTT-CATTTCCATT
14490448 T-CATTCTCA-TTCTCATT
1 TCCATT-TCATTTC-CATT
*
14490465 TCAATTTCATTT
1 TCCATTTCATTT
14490477 TATATTCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
16 2 0.05
17 20 0.54
18 15 0.41
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (17 bp):
TCCATTTCATTTCCATT
Found at i:14490437 original size:12 final size:11
Alignment explanation
Indices: 14490413--14490476 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 11
14490403 GACTATAACA
14490413 TCCATTTCATT
1 TCCATTTCATT
14490424 TCCATTTCCATT
1 TCCATTT-CATT
*
14490436 TCCATTTTCATA
1 TCCA-TTTCATT
14490448 T-CATTCTCA-T
1 TCCATT-TCATT
14490458 TCTCATTTCAATT
1 TC-CATTTC-ATT
14490471 T-CATTT
1 TCCATTT
14490477 TATATTCAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
10 3 0.07
11 19 0.43
12 17 0.39
13 5 0.11
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (11 bp):
TCCATTTCATT
Found at i:14508044 original size:40 final size:40
Alignment explanation
Indices: 14507949--14508052 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
14507939 GAACAGGCTT
** * * *
14507949 TTAGCGGCGTTTGGATAAAAAACGCTGCTAAAGATTGAGCA
1 TTAGCGGCGTTT-TTTAGAAAACGCCGCTAAAGATCGAGCA
* * *
14507990 TTAGCGGTGCTTTTTAGAAAACGCCGCTAAAGATCGCGCA
1 TTAGCGGCGTTTTTTAGAAAACGCCGCTAAAGATCGAGCA
14508030 TTAGCGGCGTTTTTT-GCAAAACG
1 TTAGCGGCGTTTTTTAG-AAAACG
14508053 TCGTTCGAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.02
40 41 0.79
41 10 0.19
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (40 bp):
TTAGCGGCGTTTTTTAGAAAACGCCGCTAAAGATCGAGCA
Found at i:14508368 original size:14 final size:14
Alignment explanation
Indices: 14508349--14508382 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14508339 TATCACTATA
* *
14508349 GTTTAGGGTTTTTG
1 GTTTAGGGTATATG
14508363 GTTTAGGGTATATG
1 GTTTAGGGTATATG
14508377 GTTTAG
1 GTTTAG
14508383 ATAGGTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
GTTTAGGGTATATG
Found at i:14508437 original size:74 final size:75
Alignment explanation
Indices: 14508349--14508516 Score: 302
Period size: 74 Copynumber: 2.3 Consensus size: 75
14508339 TATCACTATA
*
14508349 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAGATAGGTTTAGGTGTTACCATTTTAAGG-TTA
1 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAGATAGGTTTAAGTGTTACCATTTTAAGGTTTA
14508413 TGGATTATGG
66 TGGATTATGG
14508423 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAGATAGGTTTAAGTGTTACCATTTTAAGGTTTA
1 GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAGATAGGTTTAAGTGTTACCATTTTAAGGTTTA
14508488 TGGATTATGG
66 TGGATTATGG
* *
14508498 GTTTAGGGATTATGGTTTA
1 GTTTAGGGTTTTTGGTTTA
14508517 TGGTTTAAAG
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 60 0.67
75 30 0.33
ACGTcount: A:0.21, C:0.02, G:0.30, T:0.46
Consensus pattern (75 bp):
GTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAGATAGGTTTAAGTGTTACCATTTTAAGGTTTA
TGGATTATGG
Found at i:14508439 original size:14 final size:14
Alignment explanation
Indices: 14508422--14508456 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14508412 ATGGATTATG
* *
14508422 GGTTTAGGGTTTTT
1 GGTTTAGGGTATAT
14508436 GGTTTAGGGTATAT
1 GGTTTAGGGTATAT
14508450 GGTTTAG
1 GGTTTAG
14508457 ATAGGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.14, C:0.00, G:0.37, T:0.49
Consensus pattern (14 bp):
GGTTTAGGGTATAT
Found at i:14508500 original size:15 final size:14
Alignment explanation
Indices: 14508482--14508519 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
14508472 ACCATTTTAA
14508482 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
14508496 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
14508511 GGTTTATGG
1 GGTTTATGG
14508520 TTTAAAGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:14508502 original size:22 final size:21
Alignment explanation
Indices: 14508477--14508529 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
14508467 GTGTTACCAT
*
14508477 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
14508499 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
14508520 TTTAAAGGAT
1 TTT-AAGGAT
14508530 GGGGTTTAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:14508596 original size:20 final size:21
Alignment explanation
Indices: 14508563--14508605 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
14508553 GTGTTAAGGG
14508563 TTTATGGTTTTAGGGTTTAGA
1 TTTATGGTTTTAGGGTTTAGA
14508584 TTTATGG-TTTAGGGTTTAGA
1 TTTATGGTTTTAGGGTTTAGA
14508604 TT
1 TT
14508606 AACTAGTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (21 bp):
TTTATGGTTTTAGGGTTTAGA
Found at i:14517776 original size:43 final size:43
Alignment explanation
Indices: 14517689--14517779 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
14517679 CTTTGAGTTC
* * * *
14517689 ATTA-CAAGATTTCCTTGATTAAGCAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTGTT
*
14517731 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTA-CTCGTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCT-GTT
14517774 ATTACC
1 ATTACC
14517780 TTGCAATGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 6 0.14
43 36 0.86
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTGTT
Found at i:14518195 original size:44 final size:43
Alignment explanation
Indices: 14518095--14518323 Score: 253
Period size: 43 Copynumber: 5.3 Consensus size: 43
14518085 AGCTTATGTT
* ** * * * *
14518095 TTTAGCGGCGTTTTTGCGAGAAGCGTCGCTAAAGGT-TTGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGATC
* * * *
14518137 TATAGCGGCATTTGTGATAAAAAGCGTCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGAT-AAAAGCGCCGCTAAAGGTCATGATC
* * *
14518181 TTTAGCGGCGTTTGTGATAAAAGCACCGCTAAAAGGCCATGACC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCT-AAAGGTCATGATC
* * * *
14518225 TTTAGCGGCGTTTATGACAAAAGCACCGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGATC
* *
14518268 TTTAGCGGTGTTTGTGATAAAAGCGCCGCTAAAGGCCATGATC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGATC
14518311 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
14518324 TTTCACATAA
Statistics
Matches: 158, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
42 13 0.08
43 86 0.54
44 59 0.37
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGATC
Found at i:14518259 original size:87 final size:86
Alignment explanation
Indices: 14518164--14518323 Score: 266
Period size: 87 Copynumber: 1.8 Consensus size: 86
14518154 TAAAAAGCGT
*
14518164 CGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGATAAAAGCACCGCTAAAAGGCCATGACCTTTA
1 CGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCACCGCT-AAAGGCCATGACCTTTA
14518229 GCGGCGTTTATGACAAAAGCAC
65 GCGGCGTTTATGACAAAAGCAC
* * * *
14518251 CGCTAAAGGTCGTGATCTTTAGCGGTGTTTGTGATAAAAGCGCCGCTAAAGGCCATGATCTTTAG
1 CGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCACCGCTAAAGGCCATGACCTTTAG
14518316 CGGCGTTT
66 CGGCGTTT
14518324 TTTCACATAA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
86 25 0.37
87 43 0.63
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (86 bp):
CGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCACCGCTAAAGGCCATGACCTTTAG
CGGCGTTTATGACAAAAGCAC
Found at i:14522705 original size:3 final size:3
Alignment explanation
Indices: 14522697--14522724 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
14522687 GTATTAACCC
14522697 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14522725 ATTTTTGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14524073 original size:16 final size:16
Alignment explanation
Indices: 14524047--14524092 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
14524037 ATTTTTGTTT
14524047 ATTTTTGCTTTGCTTTG
1 ATTTTT-CTTTGCTTTG
*
14524064 CTTTTTCTTTGCTTTG
1 ATTTTTCTTTGCTTTG
*
14524080 ATTCTTC-TTGCTT
1 ATTTTTCTTTGCTT
14524093 CAGTCTTGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 6 0.23
16 15 0.58
17 5 0.19
ACGTcount: A:0.04, C:0.17, G:0.13, T:0.65
Consensus pattern (16 bp):
ATTTTTCTTTGCTTTG
Found at i:14532691 original size:35 final size:35
Alignment explanation
Indices: 14532652--14532722 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
14532642 CTTTTAGTTT
14532652 TCTCAATGCCTTCCATAACAATTAAGAAAATGACC
1 TCTCAATGCCTTCCATAACAATTAAGAAAATGACC
14532687 TCTCAATGCCTTCCATAACAATTAAGAAAATGACC
1 TCTCAATGCCTTCCATAACAATTAAGAAAATGACC
14532722 T
1 T
14532723 GGCTAGAGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.27
Consensus pattern (35 bp):
TCTCAATGCCTTCCATAACAATTAAGAAAATGACC
Found at i:14536731 original size:118 final size:119
Alignment explanation
Indices: 14536587--14536824 Score: 469
Period size: 118 Copynumber: 2.0 Consensus size: 119
14536577 TAAAAAAATA
14536587 TTATTTAATATAACATTTTGAAATAAAAATATCGGTAATAATATAATTAAAAAATTACTATAGTG
1 TTATTTAATATAACATTTTGAAATAAAAATATCGGTAATAATATAATTAAAAAATTACTATAGTG
14536652 AAATAGAATTTAACAAAATAATTTTAAAATCTGAAAATAAAAAAAACTAAATTG
66 AAATAGAATTTAACAAAATAATTTTAAAATCTGAAAATAAAAAAAACTAAATTG
14536706 TTATTTAATA-AACATTTTGAAATAAAAATATCGGTAATAATATAATTAAAAAATTACTATAGTG
1 TTATTTAATATAACATTTTGAAATAAAAATATCGGTAATAATATAATTAAAAAATTACTATAGTG
14536770 AAATAGAATTTAACAAAATAATTTTAAAATCTGAAAATAAAAAAAACTAAATTG
66 AAATAGAATTTAACAAAATAATTTTAAAATCTGAAAATAAAAAAAACTAAATTG
14536824 T
1 T
14536825 GAAGAATAAA
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
118 109 0.92
119 10 0.08
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (119 bp):
TTATTTAATATAACATTTTGAAATAAAAATATCGGTAATAATATAATTAAAAAATTACTATAGTG
AAATAGAATTTAACAAAATAATTTTAAAATCTGAAAATAAAAAAAACTAAATTG
Found at i:14537765 original size:22 final size:22
Alignment explanation
Indices: 14537731--14537772 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14537721 CTCTTTTTTT
*
14537731 TTTTTATCATAAATATTTTAAG
1 TTTTTATCATAAATAATTTAAG
**
14537753 TTTTTATTTTAAATAATTTA
1 TTTTTATCATAAATAATTTA
14537773 TATTTACATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTTTATCATAAATAATTTAAG
Found at i:14542268 original size:31 final size:29
Alignment explanation
Indices: 14542230--14542303 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
14542220 TATATTAGTA
* * *
14542230 GTCACCCAACTATGGTCATTTTCATTTTTGG
1 GTCACCCAACTATAGTAAATTTC--TTTTGG
*
14542261 GTCACCCAACTATTAGTAAATTTCTTTTGT
1 GTCACCCAACTA-TAGTAAATTTCTTTTGG
14542291 GTCACCCAACTAT
1 GTCACCCAACTAT
14542304 CCTGGGTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 1 0.03
30 17 0.45
31 12 0.32
32 8 0.21
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (29 bp):
GTCACCCAACTATAGTAAATTTCTTTTGG
Found at i:14549558 original size:31 final size:31
Alignment explanation
Indices: 14549520--14549590 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
14549510 AAAAAGTAAG
14549520 ATAAATGGATTTTGGATGGATTATTATGTAT
1 ATAAATGGATTTTGGATGGATTATTATGTAT
14549551 ATAAATGGATTTTGGATGGATTATTATGTAT
1 ATAAATGGATTTTGGATGGATTATTATGTAT
*
14549582 A-ACATGGAT
1 ATAAATGGAT
14549591 GATGATATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 7 0.18
31 32 0.82
ACGTcount: A:0.34, C:0.01, G:0.23, T:0.42
Consensus pattern (31 bp):
ATAAATGGATTTTGGATGGATTATTATGTAT
Found at i:14552089 original size:28 final size:27
Alignment explanation
Indices: 14552057--14552110 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
14552047 GTGATTAAAT
*
14552057 AAAATCGACA-CAGCAGAATTTAAAAGAA
1 AAAATCGACAGCA--AGAAATTAAAAGAA
*
14552085 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
14552111 TAAGTCCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 12 0.52
28 9 0.39
29 2 0.09
ACGTcount: A:0.59, C:0.11, G:0.15, T:0.15
Consensus pattern (27 bp):
AAAATCGACAGCAAGAAATTAAAAGAA
Found at i:14555269 original size:43 final size:44
Alignment explanation
Indices: 14555215--14555327 Score: 117
Period size: 43 Copynumber: 2.6 Consensus size: 44
14555205 AGAAGGAAAG
* * *
14555215 ATACTGACACACATAGTACATCATCGAGCAAGAA-AAAGTAATT
1 ATACTGGCACACATAGTGCATCATCGAGCAAGAACAAAGAAATT
* *
14555258 ATACTGGCACACA-AGGTGCATCAT--AGGATGAACCAAAGAAATT
1 ATACTGGCACACATA-GTGCATCATCGAGCAAGAA-CAAAGAAATT
* *
14555301 ACACTAGCACACATAGTGCATCATCGA
1 ATACTGGCACACATAGTGCATCATCGA
14555328 ATAAACTGAA
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
41 6 0.11
42 1 0.02
43 48 0.84
44 1 0.02
45 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (44 bp):
ATACTGGCACACATAGTGCATCATCGAGCAAGAACAAAGAAATT
Found at i:14555350 original size:43 final size:42
Alignment explanation
Indices: 14555250--14555424 Score: 152
Period size: 42 Copynumber: 4.1 Consensus size: 42
14555240 GAGCAAGAAA
* * * * *
14555250 AAGTAATTATACTGGCACACAAGGTGCATCATAGGATGAACCA
1 AAGTAATTATACTAGCACACAA-GTGCATCATCGAATAAACCG
* * *
14555293 AAGAAATTACACTAGCACACATAGTGCATCATCGAATAAACTG
1 AAGTAATTATACTAGCACACA-AGTGCATCATCGAATAAACCG
* ** * * *
14555336 AAGTAATCATACTAGCACGTAAGTGCATTATCGAATAAGCTG
1 AAGTAATTATACTAGCACACAAGTGCATCATCGAATAAACCG
* * * * * *
14555378 AAGAAAATATACTAGCACATAAATGCATAATCGAATATACCG
1 AAGTAATTATACTAGCACACAAGTGCATCATCGAATAAACCG
14555420 AAGTA
1 AAGTA
14555425 TAAACCTATA
Statistics
Matches: 106, Mismatches: 25, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
42 56 0.53
43 49 0.46
44 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (42 bp):
AAGTAATTATACTAGCACACAAGTGCATCATCGAATAAACCG
Found at i:14555859 original size:17 final size:17
Alignment explanation
Indices: 14555839--14555873 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14555829 ATAATACAGT
14555839 ATCAAATTCAATATCAA
1 ATCAAATTCAATATCAA
* *
14555856 ATCATATTCAATTTCAA
1 ATCAAATTCAATATCAA
14555873 A
1 A
14555874 GTCATACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (17 bp):
ATCAAATTCAATATCAA
Found at i:14556699 original size:23 final size:23
Alignment explanation
Indices: 14556664--14556729 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 23
14556654 ATAGGATCTA
14556664 AATCTGTATCTGTTATGCATTTG
1 AATCTGTATCTGTTATGCATTTG
* *
14556687 AATCTATAACTGTTATGCATTTG
1 AATCTGTATCTGTTATGCATTTG
*
14556710 AATCTGTATCTGCTATGCAT
1 AATCTGTATCTGTTATGCAT
14556730 CGATGTCTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (23 bp):
AATCTGTATCTGTTATGCATTTG
Found at i:14558443 original size:38 final size:38
Alignment explanation
Indices: 14558398--14558474 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
14558388 ATAAAGTTAG
*
14558398 ATAAATGGGCCACATTCAGAAATGAATGTGGTTTTCTC
1 ATAAATGGGCCACATTCAGAAATGAATGTGATTTTCTC
*
14558436 ATAAATGGGTCACATTCAGAAATGAATGTGATTTTCTC
1 ATAAATGGGCCACATTCAGAAATGAATGTGATTTTCTC
14558474 A
1 A
14558475 CTAAGTATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.32
Consensus pattern (38 bp):
ATAAATGGGCCACATTCAGAAATGAATGTGATTTTCTC
Found at i:14558701 original size:16 final size:17
Alignment explanation
Indices: 14558676--14558709 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14558666 TTGGGCTGAG
14558676 AAAATAATTTAA-TCAA
1 AAAATAATTTAATTCAA
*
14558692 AAAATTATTTAATTCAA
1 AAAATAATTTAATTCAA
14558709 A
1 A
14558710 TTAATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATAATTTAATTCAA
Found at i:14559811 original size:39 final size:40
Alignment explanation
Indices: 14559757--14559837 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
14559747 GGAATTTTAA
* *
14559757 ATGACCGTAG-TTTTTTTTTTAATGACTTCTCGCCCACAT
1 ATGACCATAGTTTTTTTTTTTAATGACTTCTCACCCACAT
14559796 ATGACCATAGTTTTTTTTTTTAATGACTTCTCACCCACAT
1 ATGACCATAGTTTTTTTTTTTAATGACTTCTCACCCACAT
14559836 AT
1 AT
14559838 CAAGGCTTCG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 9 0.23
40 30 0.77
ACGTcount: A:0.23, C:0.22, G:0.10, T:0.44
Consensus pattern (40 bp):
ATGACCATAGTTTTTTTTTTTAATGACTTCTCACCCACAT
Found at i:14563063 original size:110 final size:102
Alignment explanation
Indices: 14562908--14563166 Score: 254
Period size: 110 Copynumber: 2.5 Consensus size: 102
14562898 ATACTAGTAT
* * * * *
14562908 TTAAAAAAA-ATTGGGTGCTGGGACACTCATGGCTGGCACCTCTTTATCTAATAAAAAAACAAAA
1 TTAAAAAAATTTTGGGTGCTGGGACACTGATGGCCGACACCCCTTTATCTAAT--AAAAA-AAAA
* *
14562972 TTTTTTAGGTGTCAAGACACTGATGG-TCGACATCCCCTTTATCTGA
63 TTTTTT--CTG--AAG-CACTGATGGATAG-CA-CCCCTTTATCTGA
* * *
14563018 -TAAAAAAATTTTGGGTGCTGGGACACTGATGGCCGACACCCCTTTATCTGATTAAAAAATATTT
1 TTAAAAAAATTTTGGGTGCTGGGACACTGATGGCCGACACCCCTTTATCTAATAAAAAAAAATTT
** *
14563082 TTTCTGAAGTGCTGGTGGATAGCACCCCTTTATCTGA
66 TTTCTGAAGCACTGATGGATAGCACCCCTTTATCTGA
* *
14563119 TTTAAAAAAATTTTGAGGTGCTAGGACACTGATGGCCAACACCCCTTT
1 -TTAAAAAAATTTTG-GGTGCTGGGACACTGATGGCCGACACCCCTTT
14563167 TATCATTTTC
Statistics
Matches: 129, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
101 13 0.10
102 8 0.06
103 18 0.14
104 30 0.23
105 2 0.02
107 9 0.07
108 4 0.03
109 8 0.06
110 37 0.29
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (102 bp):
TTAAAAAAATTTTGGGTGCTGGGACACTGATGGCCGACACCCCTTTATCTAATAAAAAAAAATTT
TTTCTGAAGCACTGATGGATAGCACCCCTTTATCTGA
Found at i:14566722 original size:32 final size:35
Alignment explanation
Indices: 14566637--14566727 Score: 93
Period size: 36 Copynumber: 2.7 Consensus size: 35
14566627 ACTAAAAAAT
*
14566637 TAAAACCCCTACAGTGAAAGAAAGAAAGAAAAGAA
1 TAAAAACCCTACAGTGAAAGAAAGAAAGAAAAGAA
* *
14566672 TTTTAAAAAACCT--GGTGAAAGAAAGAAAG-AAAG-A
1 ---TAAAAACCCTACAGTGAAAGAAAGAAAGAAAAGAA
14566706 -AAAAACCCTACAGTGAAAGAAA
1 TAAAAACCCTACAGTGAAAGAAA
14566728 AAACCTCTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
30 8 0.17
32 10 0.22
34 1 0.02
35 4 0.09
36 15 0.33
38 8 0.17
ACGTcount: A:0.58, C:0.12, G:0.18, T:0.12
Consensus pattern (35 bp):
TAAAAACCCTACAGTGAAAGAAAGAAAGAAAAGAA
Found at i:14568056 original size:127 final size:127
Alignment explanation
Indices: 14567830--14568084 Score: 449
Period size: 127 Copynumber: 2.0 Consensus size: 127
14567820 AAAGATCTGA
14567830 ACCATGTCAAGACTTACAATTGGGGCTCTGCGGTTTTGGTATGCCTATATCACGAACTTTGTCAA
1 ACCATGTCAAGACTTACAATTGGGGCTCTGCGGTTTTGGTATGCCTATATCACGAACTTTGTCAA
14567895 GAGACAAAGCCAAATATGAAGGACATGAGCGGTTGCTGCCTTTTGCTGCAATCATGGACATT
66 GAGACAAAGCCAAATATGAAGGACATGAGCGGTTGCTGCCTTTTGCTGCAATCATGGACATT
* * *
14567957 ACCATGTCAGGACTTACAATTGGGGCTCTG-GATTTTTGGTATGCCTATATCACGAGCTTTGTCA
1 ACCATGTCAAGACTTACAATTGGGGCTCTGCG-GTTTTGGTATGCCTATATCACGAACTTTGTCA
* *
14568021 AGCGACAAAGCCAAATATGAAGGACATGAGCGGTTGCTGCCTTTTGTTGCAATCATGGACATT
65 AGAGACAAAGCCAAATATGAAGGACATGAGCGGTTGCTGCCTTTTGCTGCAATCATGGACATT
14568084 A
1 A
14568085 TATCAGATGC
Statistics
Matches: 122, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
126 1 0.01
127 121 0.99
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (127 bp):
ACCATGTCAAGACTTACAATTGGGGCTCTGCGGTTTTGGTATGCCTATATCACGAACTTTGTCAA
GAGACAAAGCCAAATATGAAGGACATGAGCGGTTGCTGCCTTTTGCTGCAATCATGGACATT
Found at i:14570455 original size:54 final size:52
Alignment explanation
Indices: 14570305--14570600 Score: 237
Period size: 51 Copynumber: 5.6 Consensus size: 52
14570295 TGGGGTGCCA
* *
14570305 GCCATCAATGTCCCAGCACCCCAAAATTTTTTTATCAAATAAAGGGGGTGTCT-
1 GCCATCAGTGTCCCAGCA-CCCAAAATTTTTTTATCAGATAAAGGGGGTGT-TG
* * * *
14570358 GTCGTTAGTGTCCCAGCACCC-CAATTTTTTTATCAGATAAAGGGGGTGTTG
1 GCCATCAGTGTCCCAGCACCCAAAATTTTTTTATCAGATAAAGGGGGTGTTG
* *
14570409 GCCATCAGCT-TCCCAACACTCCAAAATTCTTTTTATCAGATAAAGGGGATGTTG
1 GCCATCAG-TGTCCCAGCAC-CCAAAATT-TTTTTATCAGATAAAGGGGGTGTTG
* * * * * * * *
14570463 GCCATTAGTATTCCAACACCCTAAATTTTTTTAAAATCCA-ATAAAAGGGTTGTCG
1 GCCATCAGTGTCCCAGCACCCAAAATTTTTTT---AT-CAGATAAAGGGGGTGTTG
* * * *
14570518 GTCATCAATGTCCTAGCACCCAAAATTTTTTTA-CTAGATAAA-GGAGTGTTG
1 GCCATCAGTGTCCCAGCACCCAAAATTTTTTTATC-AGATAAAGGGGGTGTTG
* * * *
14570569 GCCATTAATGTCCCAACA-CCTAAATTTTTTTA
1 GCCATCAGTGTCCCAGCACCCAAAATTTTTTTA
14570601 AATACTGGTA
Statistics
Matches: 197, Mismatches: 34, Indels: 27
0.76 0.13 0.10
Matches are distributed among these distances:
50 15 0.08
51 60 0.30
52 17 0.09
53 26 0.13
54 39 0.20
55 38 0.19
56 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (52 bp):
GCCATCAGTGTCCCAGCACCCAAAATTTTTTTATCAGATAAAGGGGGTGTTG
Found at i:14574026 original size:61 final size:60
Alignment explanation
Indices: 14573915--14574039 Score: 155
Period size: 61 Copynumber: 2.1 Consensus size: 60
14573905 TATAGTAAGC
* * * ** *
14573915 TTTAGAGTTAGGACTAGATTGACAAATTTTGTAAATGTTAGGGGGCAAATTT-TTAGAATCT
1 TTTAGAGTTAGAACTAAAATGACAAATTTTGTAAACATTAGAGGGCAAATTTGTT-GAA-CT
14573976 TTTAGAGTTAGAACTAAAATGACAAATTTTGTAAACATT-GAGGGCTAAATTTGTTGAACT
1 TTTAGAGTTAGAACTAAAATGACAAATTTTGTAAACATTAGAGGGC-AAATTTGTTGAACT
14574036 TTTA
1 TTTA
14574040 ATATTTAAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
60 11 0.20
61 43 0.77
62 2 0.04
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (60 bp):
TTTAGAGTTAGAACTAAAATGACAAATTTTGTAAACATTAGAGGGCAAATTTGTTGAACT
Found at i:14576343 original size:3 final size:3
Alignment explanation
Indices: 14576335--14576359 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14576325 CATAATTGAA
14576335 ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG A
14576360 ATAAGTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:14578889 original size:42 final size:43
Alignment explanation
Indices: 14578791--14578889 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
14578781 ATTTAAACGT
*
14578791 CACTAAGTGTACGAAACTAAAATGATGAGGTTGAATAAAAGGG
1 CACTAAGTGTGCGAAACTAAAATGATGAGGTTGAATAAAAGGG
* * * * *
14578834 CACTGAGTGTGCGAAATTAAAATCGA-GATGTTG-ATTAACGGG
1 CACTAAGTGTGCGAAACTAAAAT-GATGAGGTTGAATAAAAGGG
14578876 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
14578890 TACCGAGAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 20 0.42
43 26 0.54
44 2 0.04
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.23
Consensus pattern (43 bp):
CACTAAGTGTGCGAAACTAAAATGATGAGGTTGAATAAAAGGG
Found at i:14579732 original size:2 final size:2
Alignment explanation
Indices: 14579725--14579757 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14579715 AATAATACTA
*
14579725 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14579758 GGATTTGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14583120 original size:74 final size:74
Alignment explanation
Indices: 14583036--14583180 Score: 263
Period size: 74 Copynumber: 2.0 Consensus size: 74
14583026 AAATTAAACA
* *
14583036 TTATTATCTTCAGCTACCAAAATGTATAACTTTTGTCAGACACAAGTACTATACTAGACAAAAGT
1 TTATTATCTTCAGCTACCAAAATGTATAACTTTTGTCAGACACAAATACTAGACTAGACAAAAGT
14583101 TAATACGAG
66 TAATACGAG
*
14583110 TTATTATCTTCAGGTACCAAAATGTATAACTTTTGTCAGACACAAATACTAGACTAGACAAAAGT
1 TTATTATCTTCAGCTACCAAAATGTATAACTTTTGTCAGACACAAATACTAGACTAGACAAAAGT
14583175 TAATAC
66 TAATAC
14583181 AAGTATCATA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (74 bp):
TTATTATCTTCAGCTACCAAAATGTATAACTTTTGTCAGACACAAATACTAGACTAGACAAAAGT
TAATACGAG
Found at i:14584248 original size:22 final size:22
Alignment explanation
Indices: 14584221--14584263 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14584211 TTTTACTATT
14584221 TTGCTACAATTTCACTATTATG
1 TTGCTACAATTTCACTATTATG
* * *
14584243 TTGCTACTATTTTATTATTAT
1 TTGCTACAATTTCACTATTAT
14584264 TGTTTACATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.14, G:0.07, T:0.53
Consensus pattern (22 bp):
TTGCTACAATTTCACTATTATG
Found at i:14584294 original size:19 final size:17
Alignment explanation
Indices: 14584272--14584306 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
14584262 ATTGTTTACA
14584272 TATTGTATAATTGTTGTTT
1 TATTGT-TAATT-TTGTTT
14584291 TATTGTTAATTTTGTT
1 TATTGTTAATTTTGTT
14584307 ACTATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (17 bp):
TATTGTTAATTTTGTTT
Found at i:14584312 original size:18 final size:20
Alignment explanation
Indices: 14584241--14584312 Score: 60
Period size: 22 Copynumber: 3.6 Consensus size: 20
14584231 TTCACTATTA
* * *
14584241 TGTTGCTACTATTTTATTAT
1 TGTTGTTACTATTGTATAAT
*
14584261 TATTGTTTACATATTGTATAAT
1 TGTTG-TTAC-TATTGTATAAT
*
14584283 TGTTGTT-TTATTGT-TAAT
1 TGTTGTTACTATTGTATAAT
14584301 T-TTGTTACTATT
1 TGTTGTTACTATT
14584313 TTAGAGATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
17 5 0.12
18 9 0.21
19 6 0.14
20 4 0.10
21 5 0.12
22 13 0.31
ACGTcount: A:0.22, C:0.06, G:0.11, T:0.61
Consensus pattern (20 bp):
TGTTGTTACTATTGTATAAT
Found at i:14585631 original size:56 final size:50
Alignment explanation
Indices: 14585552--14585792 Score: 277
Period size: 50 Copynumber: 4.7 Consensus size: 50
14585542 GAGGATGAGA
* * *
14585552 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATAATTTAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACAA---AG---ATGAAAGG
* * * *
14585608 TCCCATTTAAGACCATGTCTGGGACATGACGTTGGCACCAAGATGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACAAAGATGAAAGG
** *
14585658 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACAAAGATGAAAGG
* * *
14585708 TCCC-TCGTAAGACCATGTCTGGGACATGACGTTGGCACCAAGATGAAAGG
1 TCCCAT-GTAAGACCATGTCTGGGACATGGCATTGGCACAAAGATGAAAGG
* *
14585758 TCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
14585793 TAGTGCAAGA
Statistics
Matches: 161, Mismatches: 22, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 123 0.76
51 1 0.01
53 2 0.01
56 34 0.21
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACAAAGATGAAAGG
Found at i:14585732 original size:100 final size:104
Alignment explanation
Indices: 14585552--14585792 Score: 366
Period size: 100 Copynumber: 2.3 Consensus size: 104
14585542 GAGGATGAGA
* * * *
14585552 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATAATTTAGATTATGAGAGGTCCCATTTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGC--AATCTAGATGATGAGAGGTCCCATGTA
14585617 AGACCATGTCTGGGACATGACGTTGGCACCAAGATGAAAGG
64 AGACCATGTCTGGGACATGACGTTGGCACCAAGATGAAAGG
14585658 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGC-A-CT-GA-GATGAGAGGTCCC-TCGTAA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAATCTAGATGATGAGAGGTCCCAT-GTAA
14585718 GACCATGTCTGGGACATGACGTTGGCACCAAGATGAAAGG
65 GACCATGTCTGGGACATGACGTTGGCACCAAGATGAAAGG
* *
14585758 TCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
14585793 TAGTGCAAGA
Statistics
Matches: 128, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
99 1 0.01
100 88 0.69
101 2 0.02
102 1 0.01
103 1 0.01
106 35 0.27
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (104 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAATCTAGATGATGAGAGGTCCCATGTAAG
ACCATGTCTGGGACATGACGTTGGCACCAAGATGAAAGG
Found at i:14586751 original size:2 final size:2
Alignment explanation
Indices: 14586744--14586780 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
14586734 AGGTCGAGAG
14586744 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14586781 GTTTTTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:14587261 original size:24 final size:25
Alignment explanation
Indices: 14587234--14587282 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
14587224 TTTTGAGGGT
* *
14587234 GTTTTTAAATTTATT-ATTATTATG
1 GTTTTAAAATATATTAATTATTATG
14587258 GTTTTAAAATATATTAAATTATTAT
1 GTTTTAAAATATATT-AATTATTAT
14587283 TTTAATTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
26 8 0.38
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (25 bp):
GTTTTAAAATATATTAATTATTATG
Found at i:14594577 original size:22 final size:22
Alignment explanation
Indices: 14594528--14594577 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
14594518 TCTTTTCTCT
* *
14594528 TTTCTCTTCTTCTTATTCTTCC
1 TTTCTTTTCTTCTTAGTCTTCC
*
14594550 TATCTTTTCTTCTTAGT-TTCC
1 TTTCTTTTCTTCTTAGTCTTCC
14594571 GTTTCTT
1 -TTTCTT
14594578 GCACCCCTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.06, C:0.26, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTCTTTTCTTCTTAGTCTTCC
Found at i:14600731 original size:30 final size:30
Alignment explanation
Indices: 14600697--14600769 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
14600687 CACGACCTGG
* *
14600697 CACACGGCCGTGTGTGCCACACAGTCTAGA
1 CACACGGGCGTGTGTGCCACACAGCCTAGA
*
14600727 CACACGGGCGTGTGTGCCACACAGCCTGGA
1 CACACGGGCGTGTGTGCCACACAGCCTAGA
14600757 CACACGGGCGTGT
1 CACACGGGCGTGT
14600770 CCGAGGCCGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.21, C:0.33, G:0.32, T:0.15
Consensus pattern (30 bp):
CACACGGGCGTGTGTGCCACACAGCCTAGA
Found at i:14601058 original size:15 final size:16
Alignment explanation
Indices: 14601037--14601076 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
14601027 TACCCTTTGC
14601037 TTTATTTTATT-TATTA
1 TTTATTTT-TTATATTA
14601053 -TTATTTTTTATATTA
1 TTTATTTTTTATATTA
14601068 TTTATTTTT
1 TTTATTTTT
14601077 ACTTTACTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.09
15 12 0.55
16 8 0.36
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTTTTTATATTA
Found at i:14601437 original size:178 final size:178
Alignment explanation
Indices: 14601138--14601502 Score: 730
Period size: 178 Copynumber: 2.1 Consensus size: 178
14601128 TAAATTTTAA
14601138 TTTATTTATGCTATTTAGTTATATTTCTATTATTTCTAGTATTTTTTTTACTATTATTCTTACAA
1 TTTATTTATGCTATTTAGTTATATTTCTATTATTTCTAGTATTTTTTTTACTATTATTCTTACAA
14601203 TTACCTTTAATTTTATTGGTATCATTGAATTTATTTCTTTTCTTTTCTTTTTCCTTTTCTTTTTA
66 TTACCTTTAATTTTATTGGTATCATTGAATTTATTTCTTTTCTTTTCTTTTTCCTTTTCTTTTTA
14601268 TCTTTAATTTTGTTTTTAGTTGCTTTATTTTTATTTTCTTAGACTTAT
131 TCTTTAATTTTGTTTTTAGTTGCTTTATTTTTATTTTCTTAGACTTAT
14601316 TTTATTTATGCTATTTAGTTATATTTCTATTATTTCTAGTATTTTTTTTACTATTATTCTTACAA
1 TTTATTTATGCTATTTAGTTATATTTCTATTATTTCTAGTATTTTTTTTACTATTATTCTTACAA
14601381 TTACCTTTAATTTTATTGGTATCATTGAATTTATTTCTTTTCTTTTCTTTTTCCTTTTCTTTTTA
66 TTACCTTTAATTTTATTGGTATCATTGAATTTATTTCTTTTCTTTTCTTTTTCCTTTTCTTTTTA
14601446 TCTTTAATTTTGTTTTTAGTTGCTTTATTTTTATTTTCTTAGACTTAT
131 TCTTTAATTTTGTTTTTAGTTGCTTTATTTTTATTTTCTTAGACTTAT
14601494 TTTATTTAT
1 TTTATTTAT
14601503 TATCTCTTGA
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 187 1.00
ACGTcount: A:0.19, C:0.10, G:0.05, T:0.65
Consensus pattern (178 bp):
TTTATTTATGCTATTTAGTTATATTTCTATTATTTCTAGTATTTTTTTTACTATTATTCTTACAA
TTACCTTTAATTTTATTGGTATCATTGAATTTATTTCTTTTCTTTTCTTTTTCCTTTTCTTTTTA
TCTTTAATTTTGTTTTTAGTTGCTTTATTTTTATTTTCTTAGACTTAT
Found at i:14603021 original size:13 final size:13
Alignment explanation
Indices: 14603001--14603033 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
14602991 GATTATTTGT
14603001 GAATTATTT-TGA
1 GAATTATTTATGA
14603013 GACATTATTTATGA
1 GA-ATTATTTATGA
14603027 GAATTAT
1 GAATTAT
14603034 GAGTTGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 12 0.63
14 5 0.26
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.45
Consensus pattern (13 bp):
GAATTATTTATGA
Found at i:14606262 original size:6 final size:6
Alignment explanation
Indices: 14606244--14606280 Score: 65
Period size: 6 Copynumber: 6.0 Consensus size: 6
14606234 TTATTACCCT
14606244 TAATCC ATAATCC TAATCC TAATCC TAATCC TAATCC
1 TAATCC -TAATCC TAATCC TAATCC TAATCC TAATCC
14606281 CATTTCCGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (6 bp):
TAATCC
Found at i:14610446 original size:6 final size:6
Alignment explanation
Indices: 14610435--14610461 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
14610425 GCAAAAATAG
14610435 AAACGA AAACGA AAACGA AAACGA AAA
1 AAACGA AAACGA AAACGA AAACGA AAA
14610462 TGGAAATGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.15, G:0.15, T:0.00
Consensus pattern (6 bp):
AAACGA
Found at i:14617901 original size:12 final size:12
Alignment explanation
Indices: 14617884--14617910 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14617874 AAAATTTTTA
14617884 AATAATATTAAT
1 AATAATATTAAT
14617896 AATAATATTAAT
1 AATAATATTAAT
14617908 AAT
1 AAT
14617911 GGCCTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:14618619 original size:45 final size:45
Alignment explanation
Indices: 14618555--14618642 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
14618545 TGTTGCGTCC
* *
14618555 TTCTTGCCCAATTTCTTGAATTCCCAAATCCGTAAATCGCCTCAT
1 TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTCAT
* *
14618600 TTCTTGCCTAATTTCTTGAAATCCGAAATCCCTAAATCGCCTC
1 TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTC
14618643 CTTCCTCCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (45 bp):
TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTCAT
Found at i:14619166 original size:37 final size:37
Alignment explanation
Indices: 14619124--14619208 Score: 161
Period size: 37 Copynumber: 2.3 Consensus size: 37
14619114 CTGTCGATGG
*
14619124 GTTACTGTTTTCCTGCATTTTTTTGGCATACTGGTCT
1 GTTACTGTTTTCCTGCATTTTTTAGGCATACTGGTCT
14619161 GTTACTGTTTTCCTGCATTTTTTAGGCATACTGGTCT
1 GTTACTGTTTTCCTGCATTTTTTAGGCATACTGGTCT
14619198 GTTACTGTTTT
1 GTTACTGTTTT
14619209 GTAGAAATCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.12, C:0.18, G:0.19, T:0.52
Consensus pattern (37 bp):
GTTACTGTTTTCCTGCATTTTTTAGGCATACTGGTCT
Found at i:14619307 original size:23 final size:23
Alignment explanation
Indices: 14619280--14619492 Score: 205
Period size: 23 Copynumber: 9.6 Consensus size: 23
14619270 ATTTTATACA
14619280 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
14619303 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
* * *
14619326 TTAAAGTATGCAACAGAGCCTGGA-
1 TTAAAGTATGCAA-A-AACATGTAC
* * * *
14619350 TT-TA--AT-CAATAAATATTTAG
1 TTAAAGTATGCAA-AAACATGTAC
* *** *
14619370 TATAATGTAT-TTTATACAT-TA-
1 T-TAAAGTATGCAAAAACATGTAC
14619391 ---AAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
14619411 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
14619434 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
14619457 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
14619480 TTAAAGTATGCAA
1 TTAAAGTATGCAA
14619493 CAGAGCCTGG
Statistics
Matches: 155, Mismatches: 22, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
17 5 0.03
18 5 0.03
19 5 0.03
20 5 0.03
21 3 0.02
22 2 0.01
23 120 0.77
24 5 0.03
25 5 0.03
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.30
Consensus pattern (23 bp):
TTAAAGTATGCAAAAACATGTAC
Found at i:14619406 original size:108 final size:108
Alignment explanation
Indices: 14619249--14619446 Score: 396
Period size: 108 Copynumber: 1.8 Consensus size: 108
14619239 ACTTAGGTTA
14619249 AATAAATATTTAGTATAATGTATTTTATACATTAAAGTATGCAAAAACATGTACTTAAAGTATGC
1 AATAAATATTTAGTATAATGTATTTTATACATTAAAGTATGCAAAAACATGTACTTAAAGTATGC
14619314 AAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATC
66 AAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATC
14619357 AATAAATATTTAGTATAATGTATTTTATACATTAAAGTATGCAAAAACATGTACTTAAAGTATGC
1 AATAAATATTTAGTATAATGTATTTTATACATTAAAGTATGCAAAAACATGTACTTAAAGTATGC
14619422 AAAAACATGTACTTAAAGTATGCAA
66 AAAAACATGTACTTAAAGTATGCAA
14619447 AAACATGTAC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 90 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (108 bp):
AATAAATATTTAGTATAATGTATTTTATACATTAAAGTATGCAAAAACATGTACTTAAAGTATGC
AAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATC
Found at i:14619677 original size:124 final size:124
Alignment explanation
Indices: 14619457--14626273 Score: 13634
Period size: 124 Copynumber: 55.0 Consensus size: 124
14619447 AAACATGTAC
14619457 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14619522 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14619581 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14619646 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14619705 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14619770 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14619829 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14619894 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14619953 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14620018 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14620077 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14620142 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14620201 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14620266 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14620325 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14620390 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14620449 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14620514 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14620573 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14620638 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14620697 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14620762 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14620821 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14620886 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14620945 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14621010 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14621069 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14621134 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14621193 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14621258 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14621317 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14621382 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14621441 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14621506 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14621565 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14621630 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14621689 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14621754 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14621813 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14621878 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14621937 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622002 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14622061 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622126 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14622185 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622250 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14622309 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622374 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14622433 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622498 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14622557 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622622 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14622681 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622746 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14622805 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622870 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14622929 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14622994 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14623053 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14623118 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14623177 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14623242 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14623301 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14623366 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14623425 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14623490 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14623549 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14623614 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14623673 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14623738 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14623797 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14623862 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14623921 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14623986 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14624045 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14624110 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14624169 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14624234 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14624293 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14624358 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14624417 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14624482 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14624541 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14624606 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14624665 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14624730 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14624789 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14624854 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14624913 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14624978 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14625037 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14625102 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14625161 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14625226 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14625285 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14625350 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14625409 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14625474 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14625533 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14625598 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14625657 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14625722 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14625781 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14625846 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14625905 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14625970 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14626029 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14626094 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
14626153 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
1 TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
14626218 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTAT
66 TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTAT
14626274 TGTAATGCTT
Statistics
Matches: 6693, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 6693 1.00
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (124 bp):
TTAAAGTATGCAAAAACATGTACTTAAAGTATGCAACAGAGCCTGGATTTAATCTATTTTATTTT
TATTAAATTATTACATGTACTTAGGTTAAATAAATATTTAGTATAATGTATTTTATACA
Found at i:14627127 original size:21 final size:21
Alignment explanation
Indices: 14627101--14627150 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
14627091 CAACAACTTA
*
14627101 AAGCAGATGCGGCAGCGAGAG
1 AAGCAGATGCCGCAGCGAGAG
*
14627122 AAGCAGAGGCCGCAGCGAGAG
1 AAGCAGATGCCGCAGCGAGAG
14627143 AAGCAGAT
1 AAGCAGAT
14627151 ATAGAAACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.20, G:0.40, T:0.04
Consensus pattern (21 bp):
AAGCAGATGCCGCAGCGAGAG
Found at i:14627682 original size:43 final size:42
Alignment explanation
Indices: 14627580--14627958 Score: 428
Period size: 43 Copynumber: 9.0 Consensus size: 42
14627570 GTTTGTGAAA
* **
14627580 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTTTGAAC
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TCC
* * *
14627623 -AAGCGCCGCTATAGAACATCA-CTTTTAGAGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCC
* *
14627665 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCCTTTTTT-C
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
*
14627706 TAAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCC
* *
14627749 TTAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCC
* *
14627792 TTAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTATTT-C
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCC
* * **
14627834 TAAGCGCCGTTAAAGAACATGATCTTTAGTGGCGTTTATTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCC
* * *
14627877 TTAGCACCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
* * *
14627919 TAAGCGCTGCTAAAGAGCATGATCTTTAGGGGCGTTTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT
14627959 TTCTGTAAGC
Statistics
Matches: 301, Mismatches: 28, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
41 36 0.12
42 115 0.38
43 149 0.50
44 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
Found at i:14627805 original size:127 final size:125
Alignment explanation
Indices: 14627624--14627958 Score: 456
Period size: 127 Copynumber: 2.6 Consensus size: 125
14627614 TTTTTGAACA
* * * *
14627624 AGCGCCGCTATAGAACATCA-CTTTTAGAGGCGTTTTCTTCCAAAGCGCCGCTAAAGAACATGAT
1 AGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCCTAAGCG-CGCTAAAGAACATGAT
* *
14627688 CTTTAGCGGCCTTTTTTCTAAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCTT
63 CTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCTT
* *
14627751 AGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCTTAGCGTCGCTAAAGAACATGATC
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCCTAAGCG-CGCTAAAGAACATGATC
* * **
14627816 TTTAGCGGCGTTTATTTCTAAGCGCCGTTAAAGAACATGATCTTTAGTGGCGTTTATTTTTTT
64 TTTAGCGGCGTTT-TTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCTT
* * *
14627879 AGCACCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCTGCTAAAGAGCATGATCT
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCGC-GCTAAAGAACATGATCT
*
14627944 TTAGGGGCGTTTTTT
65 TTAGCGGCGTTTTTT
14627959 TTCTGTAAGC
Statistics
Matches: 185, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
126 4 0.02
127 102 0.55
128 79 0.43
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (125 bp):
AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCGCGCTAAAGAACATGATCTT
TAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCTT
Found at i:14627888 original size:85 final size:84
Alignment explanation
Indices: 14627580--14627959 Score: 430
Period size: 85 Copynumber: 4.5 Consensus size: 84
14627570 GTTTGTGAAA
* ** * * *
14627580 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTTTGAAC-AAGCGCCGCTATAGAACAT
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TTCTTAGCGTCGCTAAAGAACAT
* *
14627642 CA-CTTTTAGAGGCGTTT-TCTTCC
63 GATC-TTTAGCGGCGTTTAT-TT-C
* * *
14627665 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGC-CTTTTTTCTAAGCGTCGCTAAAGAACATGAT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTTAGCGTCGCTAAAGAACATGAT
14627729 CTTTAGCGGCGTTTATTTCC
66 CTTTAGCGGCGTTTATTT-C
* * *
14627749 TTAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCTTAGCGTCGCTAAAGAACATGA
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTTCTTAGCGTCGCTAAAGAACATGA
14627814 TCTTTAGCGGCGTTTATTTC
65 TCTTTAGCGGCGTTTATTTC
* * * **
14627834 TAAGCGCCGTTAAAGAACATGATCTTTAGTGGCGTTTATTTTTTTAGCACCGCTAAAGAACATGA
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTTCTTAGCGTCGCTAAAGAACATGA
*
14627899 TCTTTAGCGGCGTTTTTTTC
65 TCTTTAGCGGCGTTTATTTC
* * *
14627919 TAAGCGCTGCTAAAGAGCATGATCTTTAGGGGCGTTTTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
14627960 TCTGTAAGCG
Statistics
Matches: 261, Mismatches: 27, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
83 1 0.00
84 73 0.28
85 142 0.54
86 45 0.17
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (84 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTTAGCGTCGCTAAAGAACATGAT
CTTTAGCGGCGTTTATTTC
Found at i:14629158 original size:2 final size:2
Alignment explanation
Indices: 14629151--14629175 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14629141 GTCCCTTAAG
14629151 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
14629176 CTAGGAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14630063 original size:3 final size:3
Alignment explanation
Indices: 14630055--14630103 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
14630045 TCTGATCCGA
14630055 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14630103 T
1 T
14630104 TAAACAATCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14630417 original size:22 final size:21
Alignment explanation
Indices: 14630389--14630446 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
14630379 ATAAAATCGT
*
14630389 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
14630410 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
14630433 AGATTTGATTTGTA
1 AGATATGATTTGTA
14630447 GATACCTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 15 0.45
23 12 0.36
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:14635546 original size:22 final size:21
Alignment explanation
Indices: 14635518--14635575 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
14635508 ATACAATCGT
*
14635518 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
14635539 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
14635562 AGATTTGATTTGTA
1 AGATATGATTTGTA
14635576 GATACCTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 15 0.45
23 12 0.36
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:14641784 original size:27 final size:27
Alignment explanation
Indices: 14641754--14641824 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
14641744 TAGTACTGCT
14641754 TATGACATAGGCACCACTGGTGCCACC
1 TATGACATAGGCACCACTGGTGCCACC
* * * * *
14641781 TATGACATGGGCACTATTGGTGTCACT
1 TATGACATAGGCACCACTGGTGCCACC
*
14641808 TATGACATTGGCACCAC
1 TATGACATAGGCACCAC
14641825 CAAACATATT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (27 bp):
TATGACATAGGCACCACTGGTGCCACC
Found at i:14645626 original size:17 final size:17
Alignment explanation
Indices: 14645606--14645847 Score: 202
Period size: 17 Copynumber: 14.2 Consensus size: 17
14645596 ATTGATATTT
* *
14645606 TATAAACACAACTTGCA
1 TATAAACACAGCTCGCA
* *
14645623 TATAAACACAACTAGCA
1 TATAAACACAGCTCGCA
*
14645640 TATAAACACAACTCGCA
1 TATAAACACAGCTCGCA
* * *
14645657 TATATACACTGCTGGCA
1 TATAAACACAGCTCGCA
* *
14645674 TATAAACACGGCTAGCA
1 TATAAACACAGCTCGCA
*
14645691 TATAAACACAGCTTGCA
1 TATAAACACAGCTCGCA
14645708 TATAAACACCAGC-CGCA
1 TATAAACA-CAGCTCGCA
* *
14645725 TATAAACATAGCTCGAA
1 TATAAACACAGCTCGCA
*
14645742 TAATAAA-ACTA-CCCGCA
1 T-ATAAACAC-AGCTCGCA
* * *
14645759 TACAAACATAGCTCACA
1 TATAAACACAGCTCGCA
* *
14645776 TATAAACACAACTCCACA
1 TATAAACACAGCT-CGCA
* *
14645794 TATAAACACAACTCGTA
1 TATAAACACAGCTCGCA
** *
14645811 TATAAACATGGCTCACA
1 TATAAACACAGCTCGCA
*
14645828 TATAAACACAGCTTGCA
1 TATAAACACAGCTCGCA
14645845 TAT
1 TAT
14645848 TGTCATAGGT
Statistics
Matches: 183, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
16 8 0.04
17 148 0.81
18 27 0.15
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21
Consensus pattern (17 bp):
TATAAACACAGCTCGCA
Found at i:14650084 original size:20 final size:19
Alignment explanation
Indices: 14650037--14650087 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
14650027 AAAATGTACA
* *
14650037 TGATTGCACTTCCGTGCCCT
1 TGATTGCAC-TCCGTACCCC
*
14650057 TGACTGCACTCCGGTACCCC
1 TGATTGCACTCC-GTACCCC
14650077 TGATTGCACTC
1 TGATTGCACTC
14650088 TAGTGCTCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.14, C:0.37, G:0.20, T:0.29
Consensus pattern (19 bp):
TGATTGCACTCCGTACCCC
Found at i:14652180 original size:17 final size:17
Alignment explanation
Indices: 14652158--14652192 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14652148 CATAATGGCT
*
14652158 ATAACATCAGCCAAAAC
1 ATAACATCAACCAAAAC
14652175 ATAACATCAACCAAAAC
1 ATAACATCAACCAAAAC
14652192 A
1 A
14652193 CCTATACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.57, C:0.29, G:0.03, T:0.11
Consensus pattern (17 bp):
ATAACATCAACCAAAAC
Found at i:14652664 original size:29 final size:29
Alignment explanation
Indices: 14652608--14652795 Score: 157
Period size: 29 Copynumber: 6.4 Consensus size: 29
14652598 AGCGAAAGCT
14652608 ATCCCTTTTCATTATTTGATGGTCGTCACC
1 ATCCCTTTTCATT-TTTGATGGTCGTCACC
*
14652638 ATCCCTTTTCATTTTTGATGGTTGTCACC
1 ATCCCTTTTCATTTTTGATGGTCGTCACC
* * * *
14652667 ATCCCTTTTCATAATTTGATAGTCG-AAGC
1 ATCCCTTTTCAT-TTTTGATGGTCGTCACC
** * * * * *
14652696 -TCCCTTTTCACAATTCGATAGCCG-AAGCT
1 ATCCCTTTTCA-TTTTTGATGGTCGTCA-CC
* * *
14652725 ATCCCTTTTCAGTTTTCGGTGGTCGTCACT
1 ATCCCTTTTCA-TTTTTGATGGTCGTCACC
* *
14652755 ATCCCTTTTCATTGTTGATGGTTGTCACC
1 ATCCCTTTTCATTTTTGATGGTCGTCACC
14652784 ATCCCTTTTCAT
1 ATCCCTTTTCAT
14652796 AATTAGATAG
Statistics
Matches: 130, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
28 22 0.17
29 54 0.42
30 53 0.41
31 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.42
Consensus pattern (29 bp):
ATCCCTTTTCATTTTTGATGGTCGTCACC
Found at i:14652710 original size:28 final size:29
Alignment explanation
Indices: 14652666--14652735 Score: 97
Period size: 28 Copynumber: 2.4 Consensus size: 29
14652656 TGGTTGTCAC
* * *
14652666 CATCCCTTTTCATAATTTGATAGTCGAAG
1 CATCCCTTTTCACAATTCGATAGCCGAAG
14652695 C-TCCCTTTTCACAATTCGATAGCCGAAG
1 CATCCCTTTTCACAATTCGATAGCCGAAG
14652723 CTATCCCTTTTCA
1 C-ATCCCTTTTCA
14652736 GTTTTCGGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 25 0.69
29 1 0.03
30 10 0.28
ACGTcount: A:0.24, C:0.29, G:0.11, T:0.36
Consensus pattern (29 bp):
CATCCCTTTTCACAATTCGATAGCCGAAG
Done.