Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 46 of 75
Found at i:14652786 original size:117 final size:118
Alignment explanation
Indices: 14652593--14652824 Score: 353
Period size: 117 Copynumber: 2.0 Consensus size: 118
14652583 TTTTCATAGC
* *
14652593 TCGATAGCGAAAGCTATCCCTTTTCATTATTTGATGGTCGTCACCATCCCTTTTCATTTTTGATG
1 TCGATAGCGAAAGCTATCCCTTTTCATTATTCGATGGTCGTCACCATCCCTTTTCATTGTTGATG
* *
14652658 GTTGTCACCATCCCTTTTCATAATTTGATAGTCGAAGC-TCCCTTTTCACAAT
66 GTTGTCACCATCCCTTTTCATAATTAGATAGCCGAAGCATCCCTTTTCACAAT
* *
14652710 TCGATAGCCG-AAGCTATCCCTTTTCAGTT-TTCGGTGGTCGTCACTATCCCTTTTCATTGTTGA
1 TCGATAG-CGAAAGCTATCCCTTTTCA-TTATTCGATGGTCGTCACCATCCCTTTTCATTGTTGA
*
14652773 TGGTTGTCACCATCCCTTTTCATAATTAGATAGCCGAGGCTATCCCTTTTCA
64 TGGTTGTCACCATCCCTTTTCATAATTAGATAGCCGAAGC-ATCCCTTTTCA
14652825 TTCTTGTTTC
Statistics
Matches: 104, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
117 90 0.87
118 4 0.04
119 10 0.10
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (118 bp):
TCGATAGCGAAAGCTATCCCTTTTCATTATTCGATGGTCGTCACCATCCCTTTTCATTGTTGATG
GTTGTCACCATCCCTTTTCATAATTAGATAGCCGAAGCATCCCTTTTCACAAT
Found at i:14652953 original size:23 final size:23
Alignment explanation
Indices: 14652927--14652973 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
14652917 GGGATAACGT
14652927 CGAAGCGCATAACAAGACAACAC
1 CGAAGCGCATAACAAGACAACAC
* **
14652950 CGAAGTGCATAACGGGACAACAC
1 CGAAGCGCATAACAAGACAACAC
14652973 C
1 C
14652974 AAAATACTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.30, G:0.21, T:0.06
Consensus pattern (23 bp):
CGAAGCGCATAACAAGACAACAC
Found at i:14653529 original size:13 final size:13
Alignment explanation
Indices: 14653511--14653540 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
14653501 TTAACATATT
14653511 TCACTGCATTTAC
1 TCACTGCATTTAC
14653524 TCACTGCATTTAC
1 TCACTGCATTTAC
14653537 TCAC
1 TCAC
14653541 ATACTCATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.37
Consensus pattern (13 bp):
TCACTGCATTTAC
Found at i:14654360 original size:24 final size:24
Alignment explanation
Indices: 14654328--14654378 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
14654318 TTAATTCAAT
14654328 TTAATCATTTCAACTCTGAATTTC
1 TTAATCATTTCAACTCTGAATTTC
14654352 TTAATCATTTCAACTCTGAATTTC
1 TTAATCATTTCAACTCTGAATTTC
14654376 TTA
1 TTA
14654379 CTTTGGCCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (24 bp):
TTAATCATTTCAACTCTGAATTTC
Found at i:14659216 original size:23 final size:21
Alignment explanation
Indices: 14659165--14659216 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 21
14659155 ATATGTATCA
14659165 TATTATATATAAATATTTTAAT
1 TATT-TATATAAATATTTTAAT
*
14659187 TAATTATAT-AATCATTTTAAATT
1 TATTTATATAAAT-ATTTT-AA-T
14659210 TATTTAT
1 TATTTAT
14659217 TATATTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
20 3 0.12
21 10 0.40
22 5 0.20
23 7 0.28
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TATTTATATAAATATTTTAAT
Found at i:14664323 original size:18 final size:19
Alignment explanation
Indices: 14664287--14664328 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
14664277 GCAAATGAAT
14664287 CATTTATCATCTTCATTTC
1 CATTTATCATCTTCATTTC
14664306 CATTTA-CAT-TTCCATTTC
1 CATTTATCATCTT-CATTTC
14664324 CATTT
1 CATTT
14664329 TGAGAAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.52
Consensus pattern (19 bp):
CATTTATCATCTTCATTTC
Found at i:14674944 original size:48 final size:48
Alignment explanation
Indices: 14674813--14674953 Score: 119
Period size: 48 Copynumber: 3.0 Consensus size: 48
14674803 CCAACTCTAT
* * * * * * *
14674813 CGAAGGTGCGATCATTGACTTGACGATTCGGGATTATGCTTGTTATGC
1 CGAAGGTGCAATCATTGACTTGATGACTCAGGATTACGCTTATTATGA
* * *
14674861 CGAAGGTACAA-CAATTGACCTGAT-AGCTTTA-GATTACGCTTATTATGA
1 CGAAGGTGCAATC-ATTGACTTGATGA-C-TCAGGATTACGCTTATTATGA
* *
14674909 CGAAGGTGTAATCATTGACTTGATGACTCAGGATTAC-ATTATTAT
1 CGAAGGTGCAATCATTGACTTGATGACTCAGGATTACGCTTATTAT
14674954 ACCAAAGAGG
Statistics
Matches: 72, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
47 11 0.15
48 58 0.81
49 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (48 bp):
CGAAGGTGCAATCATTGACTTGATGACTCAGGATTACGCTTATTATGA
Found at i:14675229 original size:49 final size:49
Alignment explanation
Indices: 14675157--14675254 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
14675147 TGTTACAGGT
* *
14675157 CTCAGTTATCTTTTACTTTCATCACCACTTTCCCAGCCCAGAGTTATGG
1 CTCAGTTATCTCTTACTTTCATCACCACTTTCCCAACCCAGAGTTATGG
14675206 CTCAGTTATCTCTTACTTTCATCACCACTTTCCCAACCCAGAGTTATGG
1 CTCAGTTATCTCTTACTTTCATCACCACTTTCCCAACCCAGAGTTATGG
14675255 ATGTAGAGGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.21, C:0.32, G:0.11, T:0.36
Consensus pattern (49 bp):
CTCAGTTATCTCTTACTTTCATCACCACTTTCCCAACCCAGAGTTATGG
Found at i:14676966 original size:32 final size:32
Alignment explanation
Indices: 14676925--14676990 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
14676915 TTAAAATATA
14676925 AAATTTAATTATATTCTATTCCATACAAAACT
1 AAATTTAATTATATTCTATTCCATACAAAACT
*
14676957 AAATTTAATTATATTCTATTCCATTCAAAACT
1 AAATTTAATTATATTCTATTCCATACAAAACT
14676989 AA
1 AA
14676991 CTTATTATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (32 bp):
AAATTTAATTATATTCTATTCCATACAAAACT
Found at i:14676995 original size:27 final size:29
Alignment explanation
Indices: 14676930--14676999 Score: 86
Period size: 32 Copynumber: 2.3 Consensus size: 29
14676920 ATATAAAATT
14676930 TAATTATATTCTATTCCATACAAAACTAAA
1 TAATTATATTCTATTCCATACAAAACT-AA
*
14676960 TTTAATTATATTCTATTCCATTCAAAACTAA
1 --TAATTATATTCTATTCCATACAAAACTAA
*
14676991 CTTATTATA
1 -TAATTATA
14677000 ACCATTCCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 7 0.20
31 2 0.06
32 26 0.74
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (29 bp):
TAATTATATTCTATTCCATACAAAACTAA
Found at i:14677509 original size:22 final size:23
Alignment explanation
Indices: 14677478--14677543 Score: 75
Period size: 22 Copynumber: 2.9 Consensus size: 23
14677468 TCTGTATATT
14677478 TTCTTTTTCTTCTTCTTTTTTTA
1 TTCTTTTTCTTCTTCTTTTTTTA
14677501 TT-TTTTTC-TCTT-TTTTCCTTTA
1 TTCTTTTTCTTCTTCTTTT--TTTA
*
14677523 TTCTTTTCCTTCTTTCTTTTT
1 TTCTTTTTCTTC-TTCTTTTT
14677544 ACTTCCTCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
20 4 0.11
21 4 0.11
22 12 0.33
23 7 0.19
24 3 0.08
25 2 0.06
26 4 0.11
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (23 bp):
TTCTTTTTCTTCTTCTTTTTTTA
Found at i:14677512 original size:18 final size:20
Alignment explanation
Indices: 14677476--14677516 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
14677466 CGTCTGTATA
*
14677476 TTTTCTTTTTCTTCTTCTTT
1 TTTTATTTTTCTTCTTCTTT
14677496 TTTTATTTTT-TTC-TCTTT
1 TTTTATTTTTCTTCTTCTTT
14677514 TTT
1 TTT
14677517 CCTTTATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 3 0.15
20 9 0.45
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTATTTTTCTTCTTCTTT
Found at i:14678975 original size:307 final size:307
Alignment explanation
Indices: 14678421--14679038 Score: 1173
Period size: 307 Copynumber: 2.0 Consensus size: 307
14678411 ACGTGAACTC
*
14678421 TCTGATACTCTGTAATGGACGTATGAATATCATAATTGTAAGTGTATTGTGGATAATTGTACTAT
1 TCTGATACTCTGTAATGGACGTATGAATATCATAATTGTAAGTGTATTGTAGATAATTGTACTAT
*
14678486 GCATTTGCATGGATTGGGATGTTATGAAGAAAGAAGTAATCTACTCTGAATTAGTGGTTAAGCCA
66 GCATTTGCATGGATTGAGATGTTATGAAGAAAGAAGTAATCTACTCTGAATTAGTGGTTAAGCCA
* * *
14678551 CCATGTGTATAGTTCTAATTCTGGCGCTTCGTCACTTTACAATCCATCAACTAAGTTGTGTTTCT
131 CCATGTGTATAGTTCTAATTATGGCGCTTCGTCACTTTACAATCCAGCAACTAAGTTGTATTTCT
*
14678616 GTAAACGTGTCAGATAGACAATTTATGGTATGTAAGGTTGGTTGAGCATTGAATGCCCTTAAAGG
196 ATAAACGTGTCAGATAGACAATTTATGGTATGTAAGGTTGGTTGAGCATTGAATGCCCTTAAAGG
14678681 TGTTGAGATGGCCGAAGATGGTGTGTAGAAGATGGGGGTTAGAAATA
261 TGTTGAGATGGCCGAAGATGGTGTGTAGAAGATGGGGGTTAGAAATA
14678728 TCTGATACTCTGTAATGGACGTATGAATATCATAATTGTAAGTGTATTGTAGATAATTGTACTAT
1 TCTGATACTCTGTAATGGACGTATGAATATCATAATTGTAAGTGTATTGTAGATAATTGTACTAT
*
14678793 GCATTTGCATGGGTTGAGATGTTATGAAGAAAGAAGTAATCTACTCTGAATTAGTGGTTAAGCCA
66 GCATTTGCATGGATTGAGATGTTATGAAGAAAGAAGTAATCTACTCTGAATTAGTGGTTAAGCCA
14678858 CCATGTGTATAGTTCTAATTATGGCGCTTCGTCACTTTACAATCCAGCAACTAAGTTGTATTTCT
131 CCATGTGTATAGTTCTAATTATGGCGCTTCGTCACTTTACAATCCAGCAACTAAGTTGTATTTCT
14678923 ATAAACGTGTCAGATAGACAATTTATGGTATGTAAGGTTGGTTGAGCATTGAATGCCCTTAAAGG
196 ATAAACGTGTCAGATAGACAATTTATGGTATGTAAGGTTGGTTGAGCATTGAATGCCCTTAAAGG
14678988 TGTTGAGATGGCCGAAGATGGTGTGTAGAAGATGGGGGTTAGAAATA
261 TGTTGAGATGGCCGAAGATGGTGTGTAGAAGATGGGGGTTAGAAATA
14679035 TCTG
1 TCTG
14679039 CATCTGAATC
Statistics
Matches: 304, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
307 304 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (307 bp):
TCTGATACTCTGTAATGGACGTATGAATATCATAATTGTAAGTGTATTGTAGATAATTGTACTAT
GCATTTGCATGGATTGAGATGTTATGAAGAAAGAAGTAATCTACTCTGAATTAGTGGTTAAGCCA
CCATGTGTATAGTTCTAATTATGGCGCTTCGTCACTTTACAATCCAGCAACTAAGTTGTATTTCT
ATAAACGTGTCAGATAGACAATTTATGGTATGTAAGGTTGGTTGAGCATTGAATGCCCTTAAAGG
TGTTGAGATGGCCGAAGATGGTGTGTAGAAGATGGGGGTTAGAAATA
Found at i:14683238 original size:14 final size:15
Alignment explanation
Indices: 14683219--14683250 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14683209 GTGGTTATAG
14683219 TTAAAATA-ATAAAA
1 TTAAAATAGATAAAA
14683233 TTAAAATAGATAAAA
1 TTAAAATAGATAAAA
14683248 TTA
1 TTA
14683251 TGATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
TTAAAATAGATAAAA
Found at i:14688461 original size:27 final size:26
Alignment explanation
Indices: 14688403--14688473 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
14688393 CTCAAACTGA
*
14688403 TATAAAATGATTGTTATGCCCTACGT
1 TATAAAATGACTGTTATGCCCTACGT
** * *
14688429 GGTAAAATGACTGTTGTGCCCCTATGT
1 TATAAAATGACTGTTATG-CCCTACGT
14688456 TATAAAATGACTG-TATGC
1 TATAAAATGACTGTTATGC
14688474 TTTATGTTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.03
26 17 0.47
27 18 0.50
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (26 bp):
TATAAAATGACTGTTATGCCCTACGT
Found at i:14688803 original size:34 final size:31
Alignment explanation
Indices: 14688754--14688821 Score: 91
Period size: 34 Copynumber: 2.1 Consensus size: 31
14688744 TTACTATCAT
*
14688754 TGTAATGAGAGAAGGCCCACACTGATACTGATAC
1 TGTAATGAGAAAAGGCCCA-ACTGA-ACTGA-AC
*
14688788 TGTAATGGGAAAAGGCCCAACTGAACTGAAC
1 TGTAATGAGAAAAGGCCCAACTGAACTGAAC
14688819 TGT
1 TGT
14688822 TATTCAATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
31 5 0.16
32 5 0.16
33 5 0.16
34 17 0.53
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (31 bp):
TGTAATGAGAAAAGGCCCAACTGAACTGAAC
Found at i:14689078 original size:14 final size:15
Alignment explanation
Indices: 14689050--14689079 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14689040 TAATAAGGCC
14689050 TCTTTAAATTTTTTT
1 TCTTTAAATTTTTTT
14689065 TCTTTAAATTTTTTT
1 TCTTTAAATTTTTTT
14689080 AATTTGGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (15 bp):
TCTTTAAATTTTTTT
Found at i:14693234 original size:36 final size:36
Alignment explanation
Indices: 14693187--14693258 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
14693177 TTGATTTTTC
*
14693187 TTTTTCTTATTTTTTGTTTTCGATTTTGATTTTGAT
1 TTTTTCTTATTTTTTATTTTCGATTTTGATTTTGAT
*
14693223 TTTTTCTTATTTTTTATTTTTGATTTTGATTTTGAT
1 TTTTTCTTATTTTTTATTTTCGATTTTGATTTTGAT
14693259 CTGAACTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.12, C:0.04, G:0.10, T:0.74
Consensus pattern (36 bp):
TTTTTCTTATTTTTTATTTTCGATTTTGATTTTGAT
Found at i:14693243 original size:42 final size:41
Alignment explanation
Indices: 14693177--14693258 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 41
14693167 TTCACTTTGA
14693177 TTGATTTTTCTTTTTCTTATTTTTTG-TTTTCGATTTTGATT
1 TTGATTTTTCTTTTTCTTATTTTTTGATTTT-GATTTTGATT
*
14693218 TTGATTTTTTCTTATTTTTTA-TTTTTGATTTTGATTTTGAT
1 TTGA-TTTTTCTT-TTTCTTATTTTTTGATTTTGATTTTGAT
14693259 CTGAACTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
41 4 0.11
42 23 0.62
43 10 0.27
ACGTcount: A:0.12, C:0.05, G:0.10, T:0.73
Consensus pattern (41 bp):
TTGATTTTTCTTTTTCTTATTTTTTGATTTTGATTTTGATT
Found at i:14698259 original size:19 final size:19
Alignment explanation
Indices: 14698222--14698262 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14698212 AAATAAGTGT
*
14698222 AATAATAATACCAATAATA
1 AATAATAATACCAACAATA
**
14698241 AATAATAATAGTAACAATA
1 AATAATAATACCAACAATA
14698260 AAT
1 AAT
14698263 TTATTAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.27
Consensus pattern (19 bp):
AATAATAATACCAACAATA
Found at i:14699335 original size:12 final size:13
Alignment explanation
Indices: 14699320--14699353 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
14699310 TAATTTGGAC
14699320 TGTTATTTTATT-
1 TGTTATTTTATTA
14699332 TGTTATTTTATTA
1 TGTTATTTTATTA
14699345 T-TTATTTTA
1 TGTTATTTTA
14699354 ATAGCAGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 20 0.95
13 1 0.05
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (13 bp):
TGTTATTTTATTA
Found at i:14711188 original size:72 final size:72
Alignment explanation
Indices: 14711064--14711238 Score: 266
Period size: 72 Copynumber: 2.5 Consensus size: 72
14711054 AAAATCATAT
* *
14711064 ATAAACAACTATTGATAAAACTA-ATT-TAGTATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGATTATA-CATAAATAAGGAGAACATAAATTCAATATCCAAA
*
14711127 GACCAAAC
65 AACCAAAC
*
14711135 ATAAACAACTATTAATAAAACTAGATTATACATAAATAAGGAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTATACATAAATAAGGAGAACATAAATTCAATATCCAAAA
14711200 ACCAAAC
66 ACCAAAC
* *
14711207 ATAAATAACTATTGATAAAACTAGTTTA-ACAT
1 ATAAACAACTATTGATAAAACTAGATTATACAT
14711239 TGTTGTTTAA
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
71 26 0.27
72 67 0.71
73 2 0.02
ACGTcount: A:0.54, C:0.14, G:0.06, T:0.26
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTATACATAAATAAGGAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:14714257 original size:23 final size:22
Alignment explanation
Indices: 14714220--14714268 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
14714210 AGGCTACAAG
* *
14714220 AATTGGAACAAACTTTTGTTGT
1 AATTGGAACAAACTTCTATTGT
*
14714242 AATTGGCAATAAACTTCTATTGT
1 AATTGG-AACAAACTTCTATTGT
14714265 AATT
1 AATT
14714269 TGGTTGGTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (22 bp):
AATTGGAACAAACTTCTATTGT
Found at i:14720386 original size:14 final size:14
Alignment explanation
Indices: 14720369--14720428 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
14720359 AAAATAGAGG
14720369 ATTGAAAATTAGAA
1 ATTGAAAATTAGAA
14720383 ATTGAAAATTA-AA
1 ATTGAAAATTAGAA
* *
14720396 ACTTGAAGATTAAAA
1 A-TTGAAAATTAGAA
*
14720411 ATAT-AAAATTGGAA
1 AT-TGAAAATTAGAA
14720425 ATTG
1 ATTG
14720429 GGGGTTAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
13 4 0.11
14 30 0.79
15 4 0.11
ACGTcount: A:0.55, C:0.02, G:0.13, T:0.30
Consensus pattern (14 bp):
ATTGAAAATTAGAA
Found at i:14727948 original size:24 final size:24
Alignment explanation
Indices: 14727921--14727966 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
14727911 TGACATTTTT
14727921 TAAAAATAATTACTAAAAAATTCC
1 TAAAAATAATTACTAAAAAATTCC
* *
14727945 TAAAAATAATTATTTAAAAATT
1 TAAAAATAATTACTAAAAAATT
14727967 ATAAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (24 bp):
TAAAAATAATTACTAAAAAATTCC
Found at i:14727977 original size:24 final size:24
Alignment explanation
Indices: 14727921--14727973 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
14727911 TGACATTTTT
*
14727921 TAAAAATAATTACTAAAAAATTCC
1 TAAAAATAATTACTAAAAAATTCA
* *
14727945 TAAAAATAATTATTTAAAAATT-A
1 TAAAAATAATTACTAAAAAATTCA
14727968 TAAAAA
1 TAAAAA
14727974 ATAAATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
TAAAAATAATTACTAAAAAATTCA
Found at i:14728189 original size:29 final size:29
Alignment explanation
Indices: 14728099--14728198 Score: 71
Period size: 29 Copynumber: 3.4 Consensus size: 29
14728089 TTTTTTAGTT
* * *
14728099 AATTACTAAATTTTTTAAAAAAATTATGCAA
1 AATTATTAAATTTTTTAAAAATA-TAT-AAA
* * *
14728130 AATTATTGATAA--TTATAAGAATTTATAAA
1 AATTATT-A-AATTTTTTAAAAATATATAAA
*
14728159 AATTATTAAATTTTTTAAAAATATATTAA
1 AATTATTAAATTTTTTAAAAATATATAAA
14728188 AATGT-TTAAAT
1 AAT-TATTAAAT
14728199 AATTAATTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
27 2 0.04
28 1 0.02
29 31 0.57
30 4 0.07
31 13 0.24
32 1 0.02
33 2 0.04
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (29 bp):
AATTATTAAATTTTTTAAAAATATATAAA
Found at i:14728195 original size:20 final size:19
Alignment explanation
Indices: 14728155--14728203 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
14728145 TAAGAATTTA
* *
14728155 TAAAAATTATTAAATTTTT
1 TAAAAATTATTAAAATGTT
14728174 TAAAAATATATTAAAATGTT
1 TAAAAAT-TATTAAAATGTT
14728194 TAAATAATTA
1 TAAA-AATTA
14728204 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 7 0.27
20 16 0.62
21 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TAAAAATTATTAAAATGTT
Found at i:14729221 original size:29 final size:29
Alignment explanation
Indices: 14729131--14729230 Score: 71
Period size: 29 Copynumber: 3.4 Consensus size: 29
14729121 TTTTTTAGTT
* * *
14729131 AATTACTAAATTTTTTAAAAAAATTATGCAA
1 AATTATTAAATTTTTTAAAAATA-TAT-AAA
* * *
14729162 AATTATTGATAA--TTATAAGAATTTATAAA
1 AATTATT-A-AATTTTTTAAAAATATATAAA
*
14729191 AATTATTAAATTTTTTAAAAATATATTAA
1 AATTATTAAATTTTTTAAAAATATATAAA
14729220 AATGT-TTAAAT
1 AAT-TATTAAAT
14729231 AATTAATTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
27 2 0.04
28 1 0.02
29 31 0.57
30 4 0.07
31 13 0.24
32 1 0.02
33 2 0.04
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (29 bp):
AATTATTAAATTTTTTAAAAATATATAAA
Found at i:14729227 original size:20 final size:19
Alignment explanation
Indices: 14729187--14729235 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
14729177 TAAGAATTTA
* *
14729187 TAAAAATTATTAAATTTTT
1 TAAAAATTATTAAAATGTT
14729206 TAAAAATATATTAAAATGTT
1 TAAAAAT-TATTAAAATGTT
14729226 TAAATAATTA
1 TAAA-AATTA
14729236 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 7 0.27
20 16 0.62
21 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TAAAAATTATTAAAATGTT
Found at i:14749330 original size:44 final size:43
Alignment explanation
Indices: 14749233--14749401 Score: 275
Period size: 43 Copynumber: 3.9 Consensus size: 43
14749223 CGCTTTAGTG
14749233 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCTA
1 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCTA
*
14749276 GAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTTTTGCTA
1 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCG-TTTTTGCTA
* **
14749320 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGTGTTTTTGAGA
1 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCTA
* *
14749363 GAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGCTTTT
1 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTT
14749402 CCCACAAACG
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
43 76 0.65
44 41 0.35
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (43 bp):
GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCTA
Found at i:14749348 original size:87 final size:87
Alignment explanation
Indices: 14749233--14749401 Score: 302
Period size: 87 Copynumber: 1.9 Consensus size: 87
14749223 CGCTTTAGTG
**
14749233 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCTAGAAGCGCCGCTAAAGATTAGGG
1 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGAGAGAAGCGCCGCTAAAGATTAGGG
*
14749298 TCTTTAGCGGCGTTTTTTGCTA
66 TCTTTAGCGGCGCTTTTTGCTA
*
14749320 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGTGTTTTTGAGAGAAGCGCCGCTAAAGATTAGGG
1 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGAGAGAAGCGCCGCTAAAGATTAGGG
14749385 TCTTTAGCGGCGCTTTT
66 TCTTTAGCGGCGCTTTT
14749402 CCCACAAACG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 78 1.00
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (87 bp):
GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGAGAGAAGCGCCGCTAAAGATTAGGG
TCTTTAGCGGCGCTTTTTGCTA
Found at i:14749414 original size:43 final size:43
Alignment explanation
Indices: 14749237--14749541 Score: 234
Period size: 43 Copynumber: 7.1 Consensus size: 43
14749227 TTAGTGGAAG
* * * *
14749237 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCTAGAAG
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTGCCACAAA
* * * * *
14749280 CGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTTTTGCTAGAAG
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCG-CTTTTGCCACAAA
* * ** * *
14749324 CGCCGCTAAAGATCAGGGTCTTTAGCGGTGTTTTTGAGAGAAG
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTGCCACAAA
* *
14749367 CGCCGCTAAAGATTAGGGTCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTGCCACAAA
* * ** * * * *
14749410 CGCCGCAAAAGACCCTGATCTATAGCGGCAC-TTCGACCACAAA
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTG-CCACAAA
* * **** * *
14749453 CGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTTCCCATAAA
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTGCCACAAA
* * * * * *
14749496 CGTCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTCCACAAA
1 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTGCCACAAA
14749539 CGC
1 CGC
14749542 ATATTTACAC
Statistics
Matches: 218, Mismatches: 41, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
42 2 0.01
43 173 0.79
44 43 0.20
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTGCCACAAA
Found at i:14749668 original size:21 final size:21
Alignment explanation
Indices: 14749643--14749691 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
14749633 TCTGCTCTGT
* * *
14749643 TCTGCTTCCCTCGCTGCTGCC
1 TCTGCTTCCCTCACTGCCGCA
14749664 TCTGCTTCCCTCACTGCCGCA
1 TCTGCTTCCCTCACTGCCGCA
14749685 TCTGCTT
1 TCTGCTT
14749692 TAAGCTGCGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.04, C:0.45, G:0.16, T:0.35
Consensus pattern (21 bp):
TCTGCTTCCCTCACTGCCGCA
Found at i:14753750 original size:29 final size:29
Alignment explanation
Indices: 14753705--14753760 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
14753695 ACTCTTAATT
14753705 ATTATTGCTATTATTCTCGAGTAGCAACA
1 ATTATTGCTATTATTCTCGAGTAGCAACA
* * * *
14753734 ATTATTTCTATTGTTCTTGATTAGCAA
1 ATTATTGCTATTATTCTCGAGTAGCAA
14753761 AAAAGGTGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (29 bp):
ATTATTGCTATTATTCTCGAGTAGCAACA
Found at i:14755173 original size:3 final size:3
Alignment explanation
Indices: 14755165--14755200 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
14755155 TTTTAATTGT
*
14755165 TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14755201 AACATACAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14768032 original size:45 final size:45
Alignment explanation
Indices: 14767967--14768094 Score: 134
Period size: 45 Copynumber: 2.9 Consensus size: 45
14767957 AGTAGATCAG
* * *
14767967 AGATCGAAAAAAAGCTGATCTTGCCTTCCCATACTGGTGGCGAAGC
1 AGATC-AAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGC
*** * * *
14768013 AGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGT
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGC
* *
14768057 AGATCAAAGAAA-CATATCTTGTCTCCCCATACTGGTGG
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGG
14768095 TGGAGTAGGT
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
43 18 0.27
44 18 0.27
45 25 0.38
46 5 0.08
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (45 bp):
AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGC
Found at i:14768102 original size:44 final size:45
Alignment explanation
Indices: 14767967--14768181 Score: 157
Period size: 44 Copynumber: 4.8 Consensus size: 45
14767957 AGTAGATCAG
* * * * *
14767967 AGATCGAAAAAAAGCTGATCTTGCCTTCCCATACTGGTGGCGAAGC
1 AGATC-AAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
*** *
14768013 AGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGT
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
* * *
14768057 AGATCAAAGAAA-CATATCTTGTCTCCCCATACTGGTGGTGGAGT
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
* ** * * *** *
14768101 AGGTTGAAGAAAACAGATCGTGTCTTCGTGTACTGG-CGTGAAGT
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
* * * * * *
14768145 AGATCAAAGATAGTAGGTCCTGTCTTCCTATATTGGT
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGT
14768182 AGCGAAGTGG
Statistics
Matches: 128, Mismatches: 38, Indels: 7
0.74 0.22 0.04
Matches are distributed among these distances:
43 18 0.14
44 63 0.49
45 42 0.33
46 5 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (45 bp):
AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
Found at i:14769884 original size:3 final size:3
Alignment explanation
Indices: 14769876--14769911 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
14769866 TTTTAATTGT
*
14769876 TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14769912 AACATACAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14771644 original size:19 final size:21
Alignment explanation
Indices: 14771606--14771644 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14771596 CAGTGATATT
*
14771606 TTTTTATATATTGTTCTAAAG
1 TTTTTATATATTCTTCTAAAG
14771627 TTTTTATAT-TTCTT-TAAA
1 TTTTTATATATTCTTCTAAA
14771645 TTTGCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTTTATATATTCTTCTAAAG
Found at i:14771965 original size:21 final size:21
Alignment explanation
Indices: 14771939--14771978 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14771929 TTTATTTTAG
*
14771939 TATGTACGAATGTTAGGTTAT
1 TATGTACGAAGGTTAGGTTAT
14771960 TATGTACGAAGGTTAGGTT
1 TATGTACGAAGGTTAGGTT
14771979 TAGCTTCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.28, T:0.40
Consensus pattern (21 bp):
TATGTACGAAGGTTAGGTTAT
Found at i:14773357 original size:49 final size:43
Alignment explanation
Indices: 14773230--14773460 Score: 277
Period size: 43 Copynumber: 5.3 Consensus size: 43
14773220 ATTATGTTTT
* * * ** *
14773230 TAGCGGCGTTT-TTGAAAAAAGCGCCGCTAAAGGT-TTTTTCTT
1 TAGCGGCGTTTGTGGGAAAAA-CGCCGCTAAAGGTCATGGTCTA
** *
14773272 TAGCGGCGTTTGTGAAAAAAACGCCGCTAAAGGTCATGGTCTG
1 TAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGTCTA
14773315 TAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGCCATGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAACGCCGCT-AA----A-GGTCATGGTCTA
* *
14773364 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGTCTA
*
14773407 TAACGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGTCTA
14773450 TAGCGGCGTTT
1 TAGCGGCGTTT
14773461 ATTTCTAAAA
Statistics
Matches: 166, Mismatches: 15, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
42 24 0.14
43 99 0.60
44 3 0.02
48 3 0.02
49 37 0.22
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGTCTA
Found at i:14773429 original size:92 final size:92
Alignment explanation
Indices: 14773272--14773447 Score: 289
Period size: 92 Copynumber: 1.9 Consensus size: 92
14773262 GTTTTTTCTT
* * *
14773272 TAGCGGCGTTTGTGAAAAAAACGCCGCTAAAGGTCATGGTCTGTAGCGGCGTTTGTGGGAAAAAC
1 TAGCGGCATTTGTGAAAAAAACGCCGCTAAAGGTCATGGTCTATAACGGCGTTTGTGGGAAAAAC
14773337 GCCGCTAAAGGCCATGGTCATGGTCTA
66 GCCGCTAAAGGCCATGGTCATGGTCTA
** *
14773364 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTATAACGGCGTTTGTGGGAAAAAC
1 TAGCGGCATTTGTGAAAAAAACGCCGCTAAAGGTCATGGTCTATAACGGCGTTTGTGGGAAAAAC
*
14773429 GCCGCTAAAGGTCATGGTC
66 GCCGCTAAAGGCCATGGTC
14773448 TATAGCGGCG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 77 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (92 bp):
TAGCGGCATTTGTGAAAAAAACGCCGCTAAAGGTCATGGTCTATAACGGCGTTTGTGGGAAAAAC
GCCGCTAAAGGCCATGGTCATGGTCTA
Found at i:14773502 original size:135 final size:134
Alignment explanation
Indices: 14773246--14773509 Score: 291
Period size: 135 Copynumber: 2.0 Consensus size: 134
14773236 CGTTTTTGAA
* ** * *
14773246 AAAAGCGCCGCTAAAGGTTTTTTCTTTAGCGGCGTTTGTGAAAAAAACGCCGCTAAAGGTCATGG
1 AAAAGCGCCGCTAAAGGTATGGTCTATAACGGCGTTTGTGAAAAAAACGCCGCTAAAGGTCATGG
* * * * ** * *
14773311 TCTGTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGCCATGGTCATGGTCTATAGCGGCATTTG
66 TCTATAGCGGCGTTTGTGCGAAAAACACCGCTAAAAGCCATGAACATGGTCAATAGCAGCATTTG
14773376 TGGG
131 TGGG
**
14773380 AAAAGCGCCGCTAAAGGTCATGGTCTATAACGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATG
1 AAAAGCGCCGCTAAAGGT-ATGGTCTATAACGGCGTTTGTGAAAAAAACGCCGCTAAAGGTCATG
* * * **
14773445 GTCTATAGCGGCGTTTATTTCTAAAAACACCGC-AAAAGTTA-GCAACAAT-GTCAATAGCAGCA
65 GTCTATAGCGGCGTTT-GTGCGAAAAACACCGCTAAAAGCCATG-AAC-ATGGTCAATAGCAGCA
14773507 TTT
127 TTT
14773510 TTTGCGGCGC
Statistics
Matches: 106, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
134 19 0.18
135 74 0.70
136 13 0.12
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (134 bp):
AAAAGCGCCGCTAAAGGTATGGTCTATAACGGCGTTTGTGAAAAAAACGCCGCTAAAGGTCATGG
TCTATAGCGGCGTTTGTGCGAAAAACACCGCTAAAAGCCATGAACATGGTCAATAGCAGCATTTG
TGGG
Found at i:14780266 original size:7 final size:7
Alignment explanation
Indices: 14780256--14780291 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
14780246 AAAATTTTAA
14780256 ATTAAAT
1 ATTAAAT
14780263 ATTAAAT
1 ATTAAAT
14780270 ATTAAAT
1 ATTAAAT
14780277 ATTAAAT
1 ATTAAAT
14780284 ATTAAAT
1 ATTAAAT
14780291 A
1 A
14780292 AAAAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATTAAAT
Found at i:14780297 original size:21 final size:21
Alignment explanation
Indices: 14780256--14780298 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
14780246 AAAATTTTAA
**
14780256 ATTAAATATTAAATATTAAAT
1 ATTAAATATTAAATAAAAAAT
14780277 ATTAAATATTAAATAAAAAAT
1 ATTAAATATTAAATAAAAAAT
14780298 A
1 A
14780299 AATTAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
ATTAAATATTAAATAAAAAAT
Found at i:14780590 original size:7 final size:7
Alignment explanation
Indices: 14780580--14780615 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
14780570 AAAATTTTAA
14780580 ATTAAAT
1 ATTAAAT
14780587 ATTAAAT
1 ATTAAAT
14780594 ATTAAAT
1 ATTAAAT
14780601 ATTAAAT
1 ATTAAAT
14780608 ATTAAAT
1 ATTAAAT
14780615 A
1 A
14780616 AAAAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATTAAAT
Found at i:14780621 original size:21 final size:21
Alignment explanation
Indices: 14780580--14780622 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
14780570 AAAATTTTAA
**
14780580 ATTAAATATTAAATATTAAAT
1 ATTAAATATTAAATAAAAAAT
14780601 ATTAAATATTAAATAAAAAAT
1 ATTAAATATTAAATAAAAAAT
14780622 A
1 A
14780623 AATTAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
ATTAAATATTAAATAAAAAAT
Found at i:14780771 original size:324 final size:324
Alignment explanation
Indices: 14780182--14780831 Score: 1291
Period size: 324 Copynumber: 2.0 Consensus size: 324
14780172 AACTATTTTC
14780182 TCCCCTTACAAAAAAACACCCTTCAATTAGGCAAGAGTTGGCACATGACATTTTTAATTATATAA
1 TCCCCTTACAAAAAAACACCCTTCAATTAGGCAAGAGTTGGCACATGACATTTTTAATTATATAA
14780247 AAATTTTAAATTAAATATTAAATATTAAATATTAAATATTAAATAAAAAATAAATTAAATTATTA
66 AAATTTTAAATTAAATATTAAATATTAAATATTAAATATTAAATAAAAAATAAATTAAATTATTA
14780312 TTTAATTTTATATTTCTTTCTCTCTTCCCCTTTTATCTTCATCTTCTTCCTTTTTAGTTCCTTCG
131 TTTAATTTTATATTTCTTTCTCTCTTCCCCTTTTATCTTCATCTTCTTCCTTTTTAGTTCCTTCG
14780377 TTTTCATCTTCTCGCTCCCTCTTTCATCTTCACCCCTCCTTTATTCCACCTCCATTATGCCGCCA
196 TTTTCATCTTCTCGCTCCCTCTTTCATCTTCACCCCTCCTTTATTCCACCTCCATTATGCCGCCA
14780442 TTATCACCACATCTTCTGCCATAGCTTATGCCACCATCCACCATATTTCAAAAATACAATCTTT
261 TTATCACCACATCTTCTGCCATAGCTTATGCCACCATCCACCATATTTCAAAAATACAATCTTT
*
14780506 TCCCCTTACAAAAAAACGCCCTTCAATTAGGCAAGAGTTGGCACATGACATTTTTAATTATATAA
1 TCCCCTTACAAAAAAACACCCTTCAATTAGGCAAGAGTTGGCACATGACATTTTTAATTATATAA
14780571 AAATTTTAAATTAAATATTAAATATTAAATATTAAATATTAAATAAAAAATAAATTAAATTATTA
66 AAATTTTAAATTAAATATTAAATATTAAATATTAAATATTAAATAAAAAATAAATTAAATTATTA
14780636 TTTAATTTTATATTTCTTTCTCTCTTCCCCTTTTATCTTCATCTTCTTCCTTTTTAGTTCCTTCG
131 TTTAATTTTATATTTCTTTCTCTCTTCCCCTTTTATCTTCATCTTCTTCCTTTTTAGTTCCTTCG
14780701 TTTTCATCTTCTCGCTCCCTCTTTCATCTTCACCCCTCCTTTATTCCACCTCCATTATGCCGCCA
196 TTTTCATCTTCTCGCTCCCTCTTTCATCTTCACCCCTCCTTTATTCCACCTCCATTATGCCGCCA
14780766 TTATCACCACATCTTCTGCCATAGCTTATGCCACCATCCACCATATTTCAAAAATACAATCTTT
261 TTATCACCACATCTTCTGCCATAGCTTATGCCACCATCCACCATATTTCAAAAATACAATCTTT
14780830 TC
1 TC
14780832 AAATCAAAGG
Statistics
Matches: 325, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
324 325 1.00
ACGTcount: A:0.30, C:0.24, G:0.05, T:0.40
Consensus pattern (324 bp):
TCCCCTTACAAAAAAACACCCTTCAATTAGGCAAGAGTTGGCACATGACATTTTTAATTATATAA
AAATTTTAAATTAAATATTAAATATTAAATATTAAATATTAAATAAAAAATAAATTAAATTATTA
TTTAATTTTATATTTCTTTCTCTCTTCCCCTTTTATCTTCATCTTCTTCCTTTTTAGTTCCTTCG
TTTTCATCTTCTCGCTCCCTCTTTCATCTTCACCCCTCCTTTATTCCACCTCCATTATGCCGCCA
TTATCACCACATCTTCTGCCATAGCTTATGCCACCATCCACCATATTTCAAAAATACAATCTTT
Found at i:14782984 original size:8 final size:8
Alignment explanation
Indices: 14782973--14782999 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
14782963 TGGTAAATAG
14782973 AAAAATGA
1 AAAAATGA
14782981 AAAAATGA
1 AAAAATGA
14782989 AAAAATGA
1 AAAAATGA
14782997 AAA
1 AAA
14783000 GAGAAGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAATGA
Found at i:14786800 original size:40 final size:42
Alignment explanation
Indices: 14786737--14786831 Score: 142
Period size: 41 Copynumber: 2.3 Consensus size: 42
14786727 AGATAAAATG
14786737 CGCCGCTAAAG-CCTCGAGAATTAGCGGCGC-TTTTCAAAAA
1 CGCCGCTAAAGCCCTCGAGAATTAGCGGCGCTTTTTCAAAAA
* *
14786777 CGTCGCTAAAGCCCT-GAGCATTAGCGGCGCTTTTTCAAAAA
1 CGCCGCTAAAGCCCTCGAGAATTAGCGGCGCTTTTTCAAAAA
*
14786818 CGCCACTAAAGCCC
1 CGCCGCTAAAGCCC
14786832 CGAAAGGTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 24 0.49
41 25 0.51
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (42 bp):
CGCCGCTAAAGCCCTCGAGAATTAGCGGCGCTTTTTCAAAAA
Found at i:14786910 original size:40 final size:41
Alignment explanation
Indices: 14786865--14787002 Score: 122
Period size: 40 Copynumber: 3.4 Consensus size: 41
14786855 TTGGGCTTAG
* *
14786865 ATTTTTTGCGGCGTTTTTACGAAAAACGCCGCTAATGCTC-
1 ATTTTTAGCGGCGTTTTTACGAAAAGCGCCGCTAATGCTCA
* * * * *
14786905 ATTTTTAACGACGTTTTTA-GAAAGGCGCTGCTAATTCTCA
1 ATTTTTAGCGGCGTTTTTACGAAAAGCGCCGCTAATGCTCA
* * * * *
14786945 ATCTTTAGTGGCG-TTTT-CCATAAAGCACCGCTAATGCTCG
1 ATTTTTAGCGGCGTTTTTACGA-AAAGCGCCGCTAATGCTCA
*
14786985 ATTTTTATCGGCGTTTTT
1 ATTTTTAGCGGCGTTTTT
14787003 TGTTCAAACG
Statistics
Matches: 74, Mismatches: 20, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
39 21 0.28
40 49 0.66
41 4 0.05
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.38
Consensus pattern (41 bp):
ATTTTTAGCGGCGTTTTTACGAAAAGCGCCGCTAATGCTCA
Found at i:14788578 original size:14 final size:14
Alignment explanation
Indices: 14788559--14788602 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
14788549 ATGCATTATA
14788559 TATATATATATACT
1 TATATATATATACT
* **
14788573 TATATATATGTAAG
1 TATATATATATACT
14788587 TATATATATTATACT
1 TATATATA-TATACT
14788602 T
1 T
14788603 TCTATACATA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (14 bp):
TATATATATATACT
Found at i:14788585 original size:108 final size:108
Alignment explanation
Indices: 14788449--14788678 Score: 437
Period size: 108 Copynumber: 2.1 Consensus size: 108
14788439 CTTTATAATC
*
14788449 TATATATTTAT-TA-ACTTATATATATGTAAGTATATATATTATACTTTCTATACATATTTTAAA
1 TATATATATATATATACTTATATATATGTAAGTATATATATTATACTTTCTATACATATTTTAAA
14788512 ATTTCTATATATATATATATATTCTTTATTTTCGTGAATGCAT
66 ATTTCTATATATATATATATATTCTTTATTTTCGTGAATGCAT
14788555 TATATATATATATATACTTATATATATGTAAGTATATATATTATACTTTCTATACATATTTTAAA
1 TATATATATATATATACTTATATATATGTAAGTATATATATTATACTTTCTATACATATTTTAAA
14788620 ATTTCTATATATATATATATATTCTTTATTTTCGTGAATGCAT
66 ATTTCTATATATATATATATATTCTTTATTTTCGTGAATGCAT
14788663 TATATATATATATATA
1 TATATATATATATATA
14788679 TTCATAATTT
Statistics
Matches: 121, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
106 10 0.08
107 2 0.02
108 109 0.90
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.51
Consensus pattern (108 bp):
TATATATATATATATACTTATATATATGTAAGTATATATATTATACTTTCTATACATATTTTAAA
ATTTCTATATATATATATATATTCTTTATTTTCGTGAATGCAT
Found at i:14801427 original size:44 final size:44
Alignment explanation
Indices: 14801359--14801480 Score: 183
Period size: 44 Copynumber: 2.8 Consensus size: 44
14801349 TAAGATGGTG
* *
14801359 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
*
14801402 TAATCCTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* *
14801447 GATCTTATCTCTCTGAAGTTGCAGTGGAGTAGAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAT
14801481 CACATCGGGT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
44 70 0.99
45 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
Found at i:14801435 original size:89 final size:88
Alignment explanation
Indices: 14801279--14801480 Score: 207
Period size: 89 Copynumber: 2.3 Consensus size: 88
14801269 ATTGAAGATA
* * * *
14801279 TCCCTGAAGTTGCAATGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGC
1 TCCCTGAAGTTGCAGTGGAGCAGATTAAGCAAGCAAGTCCTATCCTCCTGAAGTTGCAGTGAGGC
* ****
14801344 AGACTTAAGA-TGGTGAATCTTATC
66 AGA-TTAAAACCACAG-ATCTTATC
*
14801368 TCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-TAA-TCCTAT-CTCTCTGAAGTTGCAGTG-
1 TCCCTGAAGTTGCAGTGGAGCAGATT-AAG-CAAGCAAGTCCTATCCTC-CTGAAGTTGCAGTGA
14801429 GAGCAGATTAAAACCACAGATCTTATC
63 G-GCAGATTAAAACCACAGATCTTATC
* *
14801456 TCTCTGAAGTTGCAGTGGAGTAGAT
1 TCCCTGAAGTTGCAGTGGAGCAGAT
14801481 CACATCGGGT
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
88 40 0.42
89 49 0.51
90 5 0.05
91 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (88 bp):
TCCCTGAAGTTGCAGTGGAGCAGATTAAGCAAGCAAGTCCTATCCTCCTGAAGTTGCAGTGAGGC
AGATTAAAACCACAGATCTTATC
Found at i:14803985 original size:110 final size:109
Alignment explanation
Indices: 14803793--14804002 Score: 384
Period size: 110 Copynumber: 1.9 Consensus size: 109
14803783 TAATAATCGA
* *
14803793 GAATGCTCTTTAATCAAAAATAAATGAAAAGCTTGTTGTCGGGAATTTAATATGTTGTGTCCGAA
1 GAATGCTCTTTAATCAAAAATAAATGAAAAGCTTGTTCTCAGGAATTTAATATGTTGTGTCCGAA
14803858 TGCATTGGATGTGACGTATTGATTTCTCGAGACAATTTTTTTTT
66 TGCATTGGATGTGACGTATTGATTTCTCGAGACAATTTTTTTTT
*
14803902 GAATGCTCTTTAATCAAAAATAAAATGAAAAGCTTGTTCTCAGGAATTTAATATGTTGTGTCCTA
1 GAATGCTCTTTAATCAAAAAT-AAATGAAAAGCTTGTTCTCAGGAATTTAATATGTTGTGTCCGA
14803967 ATGCATTGGATGTGACGTATTGATTTCTCGAGACAA
65 ATGCATTGGATGTGACGTATTGATTTCTCGAGACAA
14804003 AGATTTTTTT
Statistics
Matches: 97, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
109 21 0.22
110 76 0.78
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (109 bp):
GAATGCTCTTTAATCAAAAATAAATGAAAAGCTTGTTCTCAGGAATTTAATATGTTGTGTCCGAA
TGCATTGGATGTGACGTATTGATTTCTCGAGACAATTTTTTTTT
Found at i:14806483 original size:20 final size:20
Alignment explanation
Indices: 14806434--14806483 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
14806424 GAGAGCATCG
* *
14806434 AAATGCTAACAGAGGCACCG
1 AAATGCAAACAGAGGCACCA
* *
14806454 AAGTGTAAACAGAGGCACCA
1 AAATGCAAACAGAGGCACCA
14806474 AAATGCAAAC
1 AAATGCAAAC
14806484 CCGTACAAGC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.10
Consensus pattern (20 bp):
AAATGCAAACAGAGGCACCA
Found at i:14819408 original size:37 final size:37
Alignment explanation
Indices: 14819366--14819442 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
14819356 TCGAATCGAA
14819366 CTATGCTTCACAACTGGAGAAAACATATCTATGAAGT
1 CTATGCTTCACAACTGGAGAAAACATATCTATGAAGT
*
14819403 CTATGCTTCACAATTGGAGAAAACATATCTATGAAGT
1 CTATGCTTCACAACTGGAGAAAACATATCTATGAAGT
14819440 CTA
1 CTA
14819443 CACTTGGAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (37 bp):
CTATGCTTCACAACTGGAGAAAACATATCTATGAAGT
Found at i:14824798 original size:88 final size:88
Alignment explanation
Indices: 14824649--14824827 Score: 322
Period size: 88 Copynumber: 2.0 Consensus size: 88
14824639 GAAAACTCTT
*
14824649 TCTGGAAAAAAACACGAGCAAAGGAACAAAGGAGAAGAAAATTCACTAATGTTGAAAATCAAATG
1 TCTGGAAAAAAACACGAGCAAACGAACAAAGGAGAAGAAAATTCACTAATGTTGAAAATCAAATG
14824714 ATACAAGAGGAGTTTCGACTACA
66 ATACAAGAGGAGTTTCGACTACA
* *
14824737 TCTGGAAAAAACCACGAGCAAACGAGCAAAGGAGAAGAAAATTCACTAATGTTGAAAATCAAATG
1 TCTGGAAAAAAACACGAGCAAACGAACAAAGGAGAAGAAAATTCACTAATGTTGAAAATCAAATG
*
14824802 ATACAAGAGGAGTTTCGACTATA
66 ATACAAGAGGAGTTTCGACTACA
14824825 TCT
1 TCT
14824828 ATTTAAAGGT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (88 bp):
TCTGGAAAAAAACACGAGCAAACGAACAAAGGAGAAGAAAATTCACTAATGTTGAAAATCAAATG
ATACAAGAGGAGTTTCGACTACA
Found at i:14825161 original size:15 final size:15
Alignment explanation
Indices: 14825143--14825175 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14825133 TTAAATGTTA
14825143 AAATTTTTCATTTTC
1 AAATTTTTCATTTTC
*
14825158 AAA-TTTTCATTTTT
1 AAATTTTTCATTTTC
14825172 AAAT
1 AAAT
14825176 GGAATGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
14 13 0.81
15 3 0.19
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (15 bp):
AAATTTTTCATTTTC
Found at i:14827711 original size:1 final size:1
Alignment explanation
Indices: 14827705--14827750 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
14827695 TTTGCATGTG
** **
14827705 TTTTTTTTTTTTAATTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14827751 GGGGGGGGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.04, C:0.00, G:0.04, T:0.91
Consensus pattern (1 bp):
T
Found at i:14827729 original size:19 final size:19
Alignment explanation
Indices: 14827705--14827750 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
14827695 TTTGCATGTG
14827705 TTTTTTTTTTTTAATTTTT
1 TTTTTTTTTTTTAATTTTT
**
14827724 TTTTTTTTTTTTGGTTTTT
1 TTTTTTTTTTTTAATTTTT
14827743 TTTTTTTT
1 TTTTTTTT
14827751 GGGGGGGGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.04, C:0.00, G:0.04, T:0.91
Consensus pattern (19 bp):
TTTTTTTTTTTTAATTTTT
Found at i:14835504 original size:56 final size:56
Alignment explanation
Indices: 14835416--14835529 Score: 149
Period size: 56 Copynumber: 2.0 Consensus size: 56
14835406 TATTTCCACT
** * *
14835416 ATTTATTTTCCTGCCACTTTAGGTATGCAATCTAC-ATATAGTATAATTGAACATGG
1 ATTTATTTTCCCACCACTTAAGGTATGAAATCT-CGATATAGTATAATTGAACATGG
* * *
14835472 ATTTATTTTCCCACCACTTAATGTTTGAAATCTCGATATAGTATCATTGAACATGG
1 ATTTATTTTCCCACCACTTAAGGTATGAAATCTCGATATAGTATAATTGAACATGG
14835528 AT
1 AT
14835530 CATAGCCTAG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 1 0.02
56 49 0.98
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (56 bp):
ATTTATTTTCCCACCACTTAAGGTATGAAATCTCGATATAGTATAATTGAACATGG
Found at i:14844662 original size:22 final size:21
Alignment explanation
Indices: 14844634--14844675 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14844624 ACCTGCCATA
*
14844634 TTTTTTTCACTTTTTTTTTTGT
1 TTTTTTTC-CTTTCTTTTTTGT
14844656 TTTTTTTCCTTTCTTTTTTG
1 TTTTTTTCCTTTCTTTTTTG
14844676 CAGCAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.02, C:0.12, G:0.05, T:0.81
Consensus pattern (21 bp):
TTTTTTTCCTTTCTTTTTTGT
Found at i:14844719 original size:24 final size:24
Alignment explanation
Indices: 14844691--14844739 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
14844681 ATAATATAGA
**
14844691 AAAAAATTATTTATTAAAATAATAT
1 AAAAAA-TATTTACAAAAATAATAT
14844716 AAAAAATATTTACAAAAATAATAT
1 AAAAAATATTTACAAAAATAATAT
14844740 GTGATTGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAAAATATTTACAAAAATAATAT
Found at i:14847813 original size:33 final size:32
Alignment explanation
Indices: 14847763--14847824 Score: 106
Period size: 33 Copynumber: 1.9 Consensus size: 32
14847753 ATAGATTGCT
*
14847763 CCCCTAATAAAAGTCATTTTCAATTTAAGCTC
1 CCCCTAATAAAAATCATTTTCAATTTAAGCTC
14847795 CCCCTATATAAAAATCATTTTCAATTTAAG
1 CCCCTA-ATAAAAATCATTTTCAATTTAAG
14847825 GCATAAAGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (32 bp):
CCCCTAATAAAAATCATTTTCAATTTAAGCTC
Found at i:14855216 original size:23 final size:23
Alignment explanation
Indices: 14855190--14855236 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
14855180 TAAATCTATA
* *
14855190 TATATATGTGCATATTTATTTTT
1 TATACATGTACATATTTATTTTT
14855213 TATACATGTACATATTTATTTTT
1 TATACATGTACATATTTATTTTT
14855236 T
1 T
14855237 TAACTAGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (23 bp):
TATACATGTACATATTTATTTTT
Found at i:14855592 original size:19 final size:20
Alignment explanation
Indices: 14855551--14855592 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
14855541 ATTTCTATGT
* *
14855551 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
14855571 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
14855590 CAT
1 CAT
14855593 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:14867566 original size:44 final size:44
Alignment explanation
Indices: 14867467--14867578 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 44
14867457 TCGGATCTAG
* * *
14867467 TCTTATCTCCCTGAAGTTGCAGT-AGAGCAGACTAAGCAAGCAAG
1 TCTTATCT-CCTGAAGTTGCAGTGAGAGAAGAATAAGCAAGCAAA
*
14867511 TCTTATCCTCCTGAAGTTGCAGTGA-AGAAGAATGAAG-ATGGCAAA
1 TCTTAT-CTCCTGAAGTTGCAGTGAGAGAAGAAT-AAGCA-AGCAAA
14867556 TCTTATCTCCTTGAA-TTGCAGTG
1 TCTTATCTCC-TGAAGTTGCAGTG
14867579 GAATCCTATC
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
44 39 0.66
45 20 0.34
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCTGAAGTTGCAGTGAGAGAAGAATAAGCAAGCAAA
Found at i:14867583 original size:26 final size:27
Alignment explanation
Indices: 14867554--14867607 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
14867544 GAAGATGGCA
* * *
14867554 AATCTTATCTCCTTGAA-TTGCAGTGG
1 AATCCTATCTCCCTGAAGTTACAGTGG
14867580 AATCCTATCTCCCTGAAGTTACAGTGG
1 AATCCTATCTCCCTGAAGTTACAGTGG
14867607 A
1 A
14867608 GCGGATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
AATCCTATCTCCCTGAAGTTACAGTGG
Found at i:14867721 original size:199 final size:199
Alignment explanation
Indices: 14867382--14867904 Score: 647
Period size: 199 Copynumber: 2.5 Consensus size: 199
14867372 GGTAGCCAGT
* * *
14867382 AATCCTATCTCCCTGAAGTTGCAGCGGAGTGGATTAAATCACAGATCTTATCTCTCTGAAGTTGC
1 AATCCTATCTCCCTGAAGTTACAGCGGAGCGGATTAAAACACAGATCTTATCTCTCTGAAGTTGC
14867447 AGAGAGCAGATCGGATCTAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGCAAGCAAGT
66 AGAGAGCAGATCGGATCTAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGCAAGCAAGT
* *
14867512 CTTATCCTCCTGAAGTTGCAGTGAAGAAGAATGAAGATGGCAAATCTTATCTCCTTGAA-TTGCA
131 CTTATCCTCCTGAAGTTGCAGTGAAGAAGAATGAAGATGGCAAATCTTATCTCCCTGAAGTTACA
14867576 GTGG
196 GTGG
* *** *
14867580 AATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACTTTGAATCTTATCTCTCTGATGTTG
1 AATCCTATCTCCCTGAAGTTACAGCGGAGCGGATTAAAACACAG-ATCTTATCTCTCTGAAGTTG
* * *
14867645 CAGAGAGTAGATCGTATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAG
65 CAGAGAGCAGATCGGATCTAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGCAAGCAAG
* * *
14867710 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTAC
130 TCTTATCCTCCTGAAGTTGCAGTGAAGAAGAATGAAGATGGCAAATCTTATCTCCCTGAAGTTAC
14867775 AGTGGAGCAGATTAAAG
195 AGT------G------G
* *
14867792 CCAATAATCCTATCTCCCTAAAGTTGCAG-GGAGCGGATTAAAACCACAGATCTTATCTCTCTGA
1 -----AATCCTATCTCCCTGAAGTTACAGCGGAGCGGATTAAAA-CACAGATCTTATCTCTCTGA
* * * *
14867856 AGTTGCAGAGAGCATG-TTGCATTTAGTCCTATCTCCCTGAAGTTGCAGT
60 AGTTGCAGAGAGCA-GATCGGATCTAGTCTTATCTCCCTGAAGTTGCAGT
14867905 GGAGAAGATT
Statistics
Matches: 277, Mismatches: 27, Indels: 24
0.84 0.08 0.07
Matches are distributed among these distances:
198 37 0.13
199 137 0.49
200 6 0.02
206 1 0.00
212 1 0.00
216 70 0.25
217 25 0.09
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (199 bp):
AATCCTATCTCCCTGAAGTTACAGCGGAGCGGATTAAAACACAGATCTTATCTCTCTGAAGTTGC
AGAGAGCAGATCGGATCTAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGCAAGCAAGT
CTTATCCTCCTGAAGTTGCAGTGAAGAAGAATGAAGATGGCAAATCTTATCTCCCTGAAGTTACA
GTGG
Found at i:14867778 original size:45 final size:44
Alignment explanation
Indices: 14867666--14867863 Score: 169
Period size: 44 Copynumber: 4.5 Consensus size: 44
14867656 TCGTATCTAG
*
14867666 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAA
*
14867710 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGCA-AGCAAA
* * *
14867755 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCAA--TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-CAAGCAAA
* * * * *
14867799 TCCTATCTCCCTAAAGTTGCAG-GGAGCGGATTAA--AACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCA-A-A
*
14867842 TCTTATCTCTCTGAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAG
14867864 AGAGCATGTT
Statistics
Matches: 127, Mismatches: 15, Indels: 25
0.76 0.09 0.15
Matches are distributed among these distances:
39 2 0.02
42 3 0.02
43 32 0.25
44 50 0.39
45 36 0.28
46 3 0.02
47 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAA
Found at i:14867849 original size:43 final size:43
Alignment explanation
Indices: 14867580--14867869 Score: 141
Period size: 44 Copynumber: 6.7 Consensus size: 43
14867570 ATTGCAGTGG
* * * **
14867580 AATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAA-CTTT
1 AATCTTATCTCCCTGAAGTTGCAG-GGAGCAGATTAAAACCAAT
* * * * *** *
14867623 GAATCTTATCTCTCTGATGTTGCAGAGAGTAGA-TCGTATC--T
1 -AATCTTATCTCCCTGAAGTTGCAGGGAGCAGATTAAAACCAAT
* * *
14867664 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGC-A-
1 AATCTTATCTCCCTGAAGTTGCAG-GGAGCAGATTAA--AACCAAT
* * * **
14867708 AGTCTTATC-CTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGC-A-
1 AATCTTATCTC-CCTGAAGTTGCAGGGA-GCAGA-TTAA-A-ACCAAT
* *
14867753 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAG-GGAGCAGATTAAAACCAAT
* * *
14867797 AATCCTATCTCCCTAAAGTTGCAGGGAGCGGATTAAAACCACA-
1 AATCTTATCTCCCTGAAGTTGCAGGGAGCAGATTAAAACCA-AT
* * *
14867840 GATCTTATCTCTCTGAAGTTGCAGAGAGCA
1 AATCTTATCTCCCTGAAGTTGCAGGGAGCA
14867870 TGTTGCATTT
Statistics
Matches: 191, Mismatches: 40, Indels: 31
0.73 0.15 0.12
Matches are distributed among these distances:
40 21 0.11
41 7 0.04
42 5 0.03
43 50 0.26
44 75 0.39
45 30 0.16
46 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGGGAGCAGATTAAAACCAAT
Found at i:14869572 original size:23 final size:23
Alignment explanation
Indices: 14869546--14869592 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
14869536 TAAATCTATA
* *
14869546 TATATATGTGCATATTTATTTTT
1 TATACATGTACATATTTATTTTT
14869569 TATACATGTACATATTTATTTTT
1 TATACATGTACATATTTATTTTT
14869592 T
1 T
14869593 TAACTAGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (23 bp):
TATACATGTACATATTTATTTTT
Found at i:14869946 original size:19 final size:20
Alignment explanation
Indices: 14869905--14869946 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
14869895 ATTTCTATGT
* *
14869905 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
14869925 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
14869944 CAT
1 CAT
14869947 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:14873841 original size:9 final size:9
Alignment explanation
Indices: 14873812--14873853 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
14873802 TATTGTTCTA
14873812 TTTATTTAT
1 TTTATTTAT
* *
14873821 CTTAGTTA-
1 TTTATTTAT
14873829 TTTATTTAT
1 TTTATTTAT
*
14873838 TTTATTTGT
1 TTTATTTAT
14873847 TTTATTT
1 TTTATTT
14873854 GAGTTGGATC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
8 6 0.22
9 21 0.78
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (9 bp):
TTTATTTAT
Found at i:14878252 original size:43 final size:42
Alignment explanation
Indices: 14878199--14878399 Score: 142
Period size: 42 Copynumber: 4.7 Consensus size: 42
14878189 ATAACGTATT
*
14878199 GTATCAATGCCA-TGTCCCAGAC-ATGGTCTTACATGGAAATCTC
1 GTATCGATGCCATTG-CCCAG-CTATGGTCTTACAT-GAAATCTC
14878242 GTATCGATGCCAATTGCCCAGCTATGGTCTTACATGAAATCTC
1 GTATCGATGCC-ATTGCCCAGCTATGGTCTTACATGAAATCTC
** * * * *
14878285 AAATCGATGCCAATAGCTCAGCTATGGTCTTAAACG-AATCTC
1 GTATCGATGCC-ATTGCCCAGCTATGGTCTTACATGAAATCTC
** * ** * *
14878327 AAATTGATGCCAATAACCCAGCTATGGTCCTACACG-AATCTC
1 GTATCGATGCC-ATTGCCCAGCTATGGTCTTACATGAAATCTC
** * *
14878369 AAATCGATGCCATAT-CCTAGATATGGTCTTA
1 GTATCGATGCCAT-TGCCCAGCTATGGTCTTA
14878400 TACGGAATCT
Statistics
Matches: 137, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
41 15 0.11
42 53 0.39
43 49 0.36
44 18 0.13
45 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
GTATCGATGCCATTGCCCAGCTATGGTCTTACATGAAATCTC
Found at i:14878338 original size:42 final size:42
Alignment explanation
Indices: 14878221--14878414 Score: 219
Period size: 42 Copynumber: 4.5 Consensus size: 42
14878211 TGTCCCAGAC
* ** *
14878221 ATGGTCTTACATGGAAATCTCGTATCGATGCCAATTGCCCAGCT
1 ATGGTCTTACA-CG-AATCTCAAATCGATGCCAATAGCCCAGCT
* *
14878265 ATGGTCTTACATGAAATCTCAAATCGATGCCAATAGCTCAGCT
1 ATGGTCTTACACG-AATCTCAAATCGATGCCAATAGCCCAGCT
* * *
14878308 ATGGTCTTAAACGAATCTCAAATTGATGCCAATAACCCAGCT
1 ATGGTCTTACACGAATCTCAAATCGATGCCAATAGCCCAGCT
* * * *
14878350 ATGGTCCTACACGAATCTCAAATCGATGCC-ATATCCTAGAT
1 ATGGTCTTACACGAATCTCAAATCGATGCCAATAGCCCAGCT
*
14878391 ATGGTCTTATACGGAATCTCAAAT
1 ATGGTCTTACAC-GAATCTCAAAT
14878415 GGATATTGAA
Statistics
Matches: 131, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
41 18 0.14
42 64 0.49
43 38 0.29
44 11 0.08
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACACGAATCTCAAATCGATGCCAATAGCCCAGCT
Found at i:14882372 original size:19 final size:19
Alignment explanation
Indices: 14882348--14882394 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
14882338 CTAATTTTTG
*
14882348 GTTTTTTCTTTTATGTCTA
1 GTTTTTTCTTTTATCTCTA
*
14882367 GTTTTTTCTTTTATCTTTA
1 GTTTTTTCTTTTATCTCTA
14882386 GTTTATTTC
1 GTTT-TTTC
14882395 ACATGCTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.70
Consensus pattern (19 bp):
GTTTTTTCTTTTATCTCTA
Found at i:14882983 original size:19 final size:19
Alignment explanation
Indices: 14882948--14882989 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 19
14882938 ACAATTCACA
14882948 CAAATTCTCTCCTAATTTCT
1 CAAATTCTCTCCTAA-TTCT
14882968 CAAATT-TCTCAC-AATTCT
1 CAAATTCTCTC-CTAATTCT
14882986 CAAA
1 CAAA
14882990 AAGCTCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 8 0.38
19 6 0.29
20 7 0.33
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (19 bp):
CAAATTCTCTCCTAATTCT
Found at i:14886930 original size:12 final size:12
Alignment explanation
Indices: 14886913--14886941 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14886903 AAGTAACCCT
14886913 AAACCTTAAATA
1 AAACCTTAAATA
14886925 AAACCTTAAATA
1 AAACCTTAAATA
14886937 AAACC
1 AAACC
14886942 CTAATAATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (12 bp):
AAACCTTAAATA
Found at i:14888255 original size:13 final size:13
Alignment explanation
Indices: 14888237--14888261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14888227 AGAAATTCAA
14888237 AACACGAAAAATT
1 AACACGAAAAATT
14888250 AACACGAAAAAT
1 AACACGAAAAAT
14888262 CAACTTATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.08, T:0.12
Consensus pattern (13 bp):
AACACGAAAAATT
Found at i:14888882 original size:188 final size:186
Alignment explanation
Indices: 14888461--14888931 Score: 667
Period size: 188 Copynumber: 2.5 Consensus size: 186
14888451 CACTATCAAA
* *
14888461 AGCAGTATTGAAAAGGGCGTCCAAATGGAAGCGTTTTTAGTACTTTTGCTGACAGTGCATCCTGT
1 AGCAGTATTGAAAAGGGCGTCCAATTGGAAGCGTTTTCAGTACTTTTGCTGACAGTGCATCCT-T
* * * * *
14888526 -TTGGAGCGTTTTTCCTATAGAAACCTCAACCACCACTATTTGGGGTACTTTTCACAAACCTTAT
65 CTTGGAGCGTTTTTCCTCTAGAAACCTCAACCCCCACTATTCGAGGTACTTTTCACAAACCTCAT
* *
14888590 TCCGGGAACTCGGGATACTTTTCAGAATTATCTCATCAAATTTATTTTCACAGAAGC
130 TCCGGGAACCCGGGATACTTTTCAGAATCATCTCATCAAATTTATTTTCACAGAAGC
* *
14888647 AACAGTATTGAAAAGGGCGTCCAATTGGAAGCGTTTTCAGTACTTTTGCTGACAGTACATCCTTC
1 AGCAGTATTGAAAAGGGCGTCCAATTGGAAGCGTTTTCAGTACTTTTGCTGACAGTGCATCCTTC
* *
14888712 TTGGAGCGTTTTTGCTCTAGAAACCTCAACCCCCACTATTCGAGGTATTTTTCACAAACCTCA-T
66 TTGGAGCGTTTTTCCTCTAGAAACCTCAACCCCCACTATTCGAGGTACTTTTCACAAACCTCATT
* * * * *
14888776 CCAGTGAATCCCGTGATATTATTTTAGAATCATCTCATCAAATTTATTTTCACAGAAGT
131 CC-GGGAA-CCCGGGATACT-TTTCAGAATCATCTCATCAAATTTATTTTCACAGAAGC
* * * *
14888835 AGCAGTACTGAAAAGGGCGTCCAATTGGTAGCGTTTTCAGTACTTTTGCTGACAATGCATCCTAC
1 AGCAGTATTGAAAAGGGCGTCCAATTGGAAGCGTTTTCAGTACTTTTGCTGACAGTGCATCCTTC
* * *
14888900 TTAGAGTGTTTTTCCTCTACAAACCTCAACCC
66 TTGGAGCGTTTTTCCTCTAGAAACCTCAACCC
14888932 ATCTTGTCAA
Statistics
Matches: 253, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
185 4 0.02
186 119 0.47
187 8 0.03
188 122 0.48
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (186 bp):
AGCAGTATTGAAAAGGGCGTCCAATTGGAAGCGTTTTCAGTACTTTTGCTGACAGTGCATCCTTC
TTGGAGCGTTTTTCCTCTAGAAACCTCAACCCCCACTATTCGAGGTACTTTTCACAAACCTCATT
CCGGGAACCCGGGATACTTTTCAGAATCATCTCATCAAATTTATTTTCACAGAAGC
Found at i:14892201 original size:12 final size:12
Alignment explanation
Indices: 14892171--14892203 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14892161 AATAGAAGCT
14892171 CACGAAAGCTAAA
1 CACGAAAG-TAAA
14892184 CA-GAAAGTAAA
1 CACGAAAGTAAA
14892195 CACGAAAGT
1 CACGAAAGT
14892204 TCGCAACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 6 0.32
12 11 0.58
13 2 0.11
ACGTcount: A:0.55, C:0.18, G:0.18, T:0.09
Consensus pattern (12 bp):
CACGAAAGTAAA
Found at i:14892316 original size:33 final size:32
Alignment explanation
Indices: 14892271--14892431 Score: 126
Period size: 33 Copynumber: 4.8 Consensus size: 32
14892261 ACATTTGTAG
*
14892271 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGCCATAACCCAGCTATGGTCTTA-CATCAGAA
* * *
14892304 TGCCATATCCCAGCTATGGTCTTACATATAAACA
1 TGCCATAACCCAGCTATGGTCTTACAT-CAGA-A
** * * * * *
14892338 CTGCCATGGTCCAAAC-ATGGTCTTACGTTCATAG
1 -TGCCAT-AACCCAGCTATGGTCTTAC-ATCAGAA
*
14892372 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGCCATAACCCAGCTATGGTCTTA-CATCAGAA
* *
14892405 TGCCATAGCCCAGCTATGGTATTACAT
1 TGCCATAACCCAGCTATGGTCTTACAT
14892432 ATAAACACTG
Statistics
Matches: 99, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
32 9 0.09
33 64 0.65
34 2 0.02
35 18 0.18
36 6 0.06
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (32 bp):
TGCCATAACCCAGCTATGGTCTTACATCAGAA
Found at i:14892443 original size:101 final size:101
Alignment explanation
Indices: 14892268--14892498 Score: 426
Period size: 101 Copynumber: 2.3 Consensus size: 101
14892258 TTTACATTTG
* *
14892268 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATATCCCAGCTATGGTCTTACATAT
1 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTATTACATAT
14892333 AAACACTGCCATGGTCCAAACATGGTCTTACGTTCA
66 AAACACTGCCATGGTCCAAACATGGTCTTACGTTCA
14892369 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTATTACATAT
1 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTATTACATAT
*
14892434 AAACACTGCCATGGTCCAACCATGGTCTTACGTTCA
66 AAACACTGCCATGGTCCAAACATGGTCTTACGTTCA
*
14892470 TAGTGCCATAACCCAGTCATGGTCTTATC
1 TAGTGCCATAACCCAGTTATGGTCTTATC
14892499 CGTCAATTCA
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 126 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (101 bp):
TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTATTACATAT
AAACACTGCCATGGTCCAAACATGGTCTTACGTTCA
Found at i:14892491 original size:33 final size:33
Alignment explanation
Indices: 14892353--14892496 Score: 103
Period size: 33 Copynumber: 4.3 Consensus size: 33
14892343 ATGGTCCAAA
14892353 CATGGTCTTACGTTCATAGTGCCATAACCCAGT
1 CATGGTCTTACGTTCATAGTGCCATAACCCAGT
* * * * *
14892386 TATGGTCTTATC-ATCAGAATGCCATAGCCCAG-
1 CATGGTCTTA-CGTTCATAGTGCCATAACCCAGT
* * * * * *** **
14892418 CTATGGTATTACATATAAACACTGCCATGGTCCAAC
1 C-ATGGTCTTACGT-T-CATAGTGCCATAACCCAGT
14892454 CATGGTCTTACGTTCATAGTGCCATAACCCAGT
1 CATGGTCTTACGTTCATAGTGCCATAACCCAGT
14892487 CATGGTCTTA
1 CATGGTCTTA
14892497 TCCGTCAATT
Statistics
Matches: 81, Mismatches: 24, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
32 1 0.01
33 54 0.67
34 3 0.04
35 22 0.27
36 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (33 bp):
CATGGTCTTACGTTCATAGTGCCATAACCCAGT
Found at i:14897521 original size:20 final size:19
Alignment explanation
Indices: 14897496--14897537 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
14897486 GGAGCAGTTT
*
14897496 TTTCAATCGATTTAAAAATA
1 TTTCAATCGAGTTAAAAA-A
*
14897516 TTTCAATTGAGTTAAAAAA
1 TTTCAATCGAGTTAAAAAA
14897535 TTT
1 TTT
14897538 TAAACCGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (19 bp):
TTTCAATCGAGTTAAAAAA
Found at i:14897702 original size:23 final size:23
Alignment explanation
Indices: 14897661--14897704 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
14897651 AGAACAAACT
*
14897661 TTATTCAAAAACATTTTTATCTG
1 TTATTCAAAAACATATTTATCTG
14897684 TTATATCAAAAACA-ATTTATC
1 TTAT-TCAAAAACATATTTATC
14897705 AAATAAAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (23 bp):
TTATTCAAAAACATATTTATCTG
Found at i:14897952 original size:9 final size:9
Alignment explanation
Indices: 14897935--14897971 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14897925 TGAGTTTTCG
14897935 AATTCGAAT
1 AATTCGAAT
*
14897944 AACTCGAAT
1 AATTCGAAT
14897953 AATTCGAAT
1 AATTCGAAT
14897962 AATTCGAAT
1 AATTCGAAT
14897971 A
1 A
14897972 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14898048 original size:21 final size:21
Alignment explanation
Indices: 14898007--14898049 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
14897997 ACCCTAAACT
* *
14898007 CTCAAACATTTTTACTTTTCC
1 CTCAAACACTTTTACTCTTCC
14898028 CTCAAA-ACTTTTACTCCTTCC
1 CTCAAACACTTTTACT-CTTCC
14898049 C
1 C
14898050 ACTTTCCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (21 bp):
CTCAAACACTTTTACTCTTCC
Found at i:14898219 original size:30 final size:31
Alignment explanation
Indices: 14898185--14898244 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
14898175 AAACCTTTTA
*
14898185 TTTTT-CCTCAAAATTTTTACTCCC-TCCCAC
1 TTTTTCCCT-AAAACTTTTACTCCCTTCCCAC
*
14898215 TTTTTCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTTCCCTAAAACTTTTACTCCCTTCCCA
14898245 TCCCACCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.20, C:0.35, G:0.00, T:0.45
Consensus pattern (31 bp):
TTTTTCCCTAAAACTTTTACTCCCTTCCCAC
Found at i:14899425 original size:55 final size:55
Alignment explanation
Indices: 14899353--14899644 Score: 307
Period size: 55 Copynumber: 5.2 Consensus size: 55
14899343 CGATTGGATT
* * * * *
14899353 GATTGTTATGCTGGAATATTGCTTCTTTTGAATATATTATTTTTATGTTTAAATC
1 GATTGTTATGTTAGAATACTGCTTCTTTTGAATAGATTATTTATATGTTTAAATC
* * * * *
14899408 AATTGTCATGTTAGAATACTGTTTCTTTTGAATCGATTATTTATATGTTTAAATT
1 GATTGTTATGTTAGAATACTGCTTCTTTTGAATAGATTATTTATATGTTTAAATC
* * * **
14899463 GATTGTCATGTT-GAAATACTGCTTCTTTTAAATCGATTGCTTATATGTTTAAATC
1 GATTGTTATGTTAG-AATACTGCTTCTTTTGAATAGATTATTTATATGTTTAAATC
* * *
14899518 GATTGTTATGGTAGAATACCGCATCTTCTTCTTTTGAATAGATTACTTATATGTTTAAATC
1 GATTGTTATGTTAGAAT-----A-CTGCTTCTTTTGAATAGATTATTTATATGTTTAAATC
* * * *
14899579 GATTTTTATGTTGGAATACTGCTTTTTTTTAATAGATTATTTATATGTTTAAATC
1 GATTGTTATGTTAGAATACTGCTTCTTTTGAATAGATTATTTATATGTTTAAATC
*
14899634 AATTGTTATGT
1 GATTGTTATGT
14899645 AGTACATCTA
Statistics
Matches: 198, Mismatches: 31, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
54 1 0.01
55 147 0.74
56 2 0.01
60 1 0.01
61 47 0.24
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.50
Consensus pattern (55 bp):
GATTGTTATGTTAGAATACTGCTTCTTTTGAATAGATTATTTATATGTTTAAATC
Found at i:14899590 original size:116 final size:116
Alignment explanation
Indices: 14899353--14899643 Score: 333
Period size: 116 Copynumber: 2.6 Consensus size: 116
14899343 CGATTGGATT
* * * * * * * * *
14899353 GATTGTTATGCTGGAATATTGCTTCTTTTGAATATATTATTTTTATGTTTAAATCAATTGTCATG
1 GATTGTCATGTTGAAATACTGCTTCTTTTAAATAGATTACTTATATGTTTAAATCAATTGTTATG
* * * * *
14899418 TTAGAATA---C-T-GT-TTCTTTTGAATCGATTATTTATATGTTTAAATT
66 GTAGAATACCGCATCTTCTTCTTTTGAATAGATTACTTATATGTTTAAATC
* * *
14899463 GATTGTCATGTTGAAATACTGCTTCTTTTAAATCGATTGCTTATATGTTTAAATCGATTGTTATG
1 GATTGTCATGTTGAAATACTGCTTCTTTTAAATAGATTACTTATATGTTTAAATCAATTGTTATG
14899528 GTAGAATACCGCATCTTCTTCTTTTGAATAGATTACTTATATGTTTAAATC
66 GTAGAATACCGCATCTTCTTCTTTTGAATAGATTACTTATATGTTTAAATC
* * * * * *
14899579 GATTTTTATGTTGGAATACTGCTTTTTTTTAATAGATTATTTATATGTTTAAATCAATTGTTATG
1 GATTGTCATGTTGAAATACTGCTTCTTTTAAATAGATTACTTATATGTTTAAATCAATTGTTATG
14899644 TAGTACATCT
Statistics
Matches: 149, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
110 60 0.40
113 1 0.01
114 1 0.01
115 1 0.01
116 86 0.58
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.49
Consensus pattern (116 bp):
GATTGTCATGTTGAAATACTGCTTCTTTTAAATAGATTACTTATATGTTTAAATCAATTGTTATG
GTAGAATACCGCATCTTCTTCTTTTGAATAGATTACTTATATGTTTAAATC
Found at i:14899927 original size:12 final size:13
Alignment explanation
Indices: 14899905--14899933 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14899895 TAATCCCAGC
14899905 AAAAACAAAAAAA
1 AAAAACAAAAAAA
14899918 AAAAACAAAAAAA
1 AAAAACAAAAAAA
14899931 AAA
1 AAA
14899934 GGGGCCACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAACAAAAAAA
Found at i:14902097 original size:78 final size:79
Alignment explanation
Indices: 14901989--14902146 Score: 309
Period size: 78 Copynumber: 2.0 Consensus size: 79
14901979 TATCATATAT
14901989 TCAACTGCTTGTAATTAATATACAAATTTATTACAAATGTAAAGAAAAAAAGAAAATTAAATATC
1 TCAACTGCTTGTAATTAATATACAAATTTATTACAAATGTAAAGAAAAAAAGAAAATTAAATATC
14902054 ATAT-TATAATTTA
66 ATATATATAATTTA
14902067 TCAACTGCTTGTAATTAATATACAAATTTATTACAAATGTAAAGAAAAAAAGAAAATTAAATATC
1 TCAACTGCTTGTAATTAATATACAAATTTATTACAAATGTAAAGAAAAAAAGAAAATTAAATATC
14902132 ATATATATAATTTA
66 ATATATATAATTTA
14902146 T
1 T
14902147 ATGAATTAAA
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 69 0.87
79 10 0.13
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (79 bp):
TCAACTGCTTGTAATTAATATACAAATTTATTACAAATGTAAAGAAAAAAAGAAAATTAAATATC
ATATATATAATTTA
Found at i:14903279 original size:19 final size:21
Alignment explanation
Indices: 14903252--14903291 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
14903242 AACTTTTATA
14903252 ATATATTTTATATAA-TATTT
1 ATATATTTTATATAATTATTT
*
14903272 ATAT-TTTTATGTAATTATTT
1 ATATATTTTATATAATTATTT
14903292 TTCCATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
ATATATTTTATATAATTATTT
Found at i:14903649 original size:26 final size:26
Alignment explanation
Indices: 14903606--14903656 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14903596 TCCTAAACCA
* *
14903606 AACTTTTCTAAAGTACTTCTCAAAAT
1 AACTTTTCCAAAGCACTTCTCAAAAT
* *
14903632 AACTTTTCCACAGCACTTTTCAAAA
1 AACTTTTCCAAAGCACTTCTCAAAA
14903657 GTAATGCTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (26 bp):
AACTTTTCCAAAGCACTTCTCAAAAT
Found at i:14912787 original size:60 final size:60
Alignment explanation
Indices: 14912672--14912788 Score: 134
Period size: 60 Copynumber: 1.9 Consensus size: 60
14912662 TTTTAGCCCC
* *
14912672 ATTTTTTTTCATATATATATTTTTTCTAAACTGTTTTTGTATTTTTTTTTGTTATTTAGG
1 ATTTTTTTTCATATATATATTTTTTCTAAACTGTTTTAGTATTTTTTTATGTTATTTAGG
* *
14912732 ATTTTCTTTT-ATATAT-TATTTTATTTTGAACTGTTTTAG-ATTTATTATTAT-TTATTT
1 ATTTT-TTTTCATATATATATTTT-TTCTAAACTGTTTTAGTATTT-TT-TTATGTTATTT
14912789 CAAGTTTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
59 10 0.20
60 32 0.65
61 7 0.14
ACGTcount: A:0.22, C:0.04, G:0.07, T:0.67
Consensus pattern (60 bp):
ATTTTTTTTCATATATATATTTTTTCTAAACTGTTTTAGTATTTTTTTATGTTATTTAGG
Found at i:14916519 original size:9 final size:9
Alignment explanation
Indices: 14916501--14916538 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
14916491 GTTTCTCGGG
14916501 TTAGGATTT
1 TTAGGATTT
*
14916510 TTAGGGTTT
1 TTAGGATTT
14916519 TTAGGATTT
1 TTAGGATTT
*
14916528 TTAGGGTTT
1 TTAGGATTT
14916537 TT
1 TT
14916539 GGAAAAAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (9 bp):
TTAGGATTT
Found at i:14916524 original size:18 final size:18
Alignment explanation
Indices: 14916501--14916538 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14916491 GTTTCTCGGG
14916501 TTAGGATTTTTAGGGTTT
1 TTAGGATTTTTAGGGTTT
14916519 TTAGGATTTTTAGGGTTT
1 TTAGGATTTTTAGGGTTT
14916537 TT
1 TT
14916539 GGAAAAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (18 bp):
TTAGGATTTTTAGGGTTT
Found at i:14917167 original size:126 final size:126
Alignment explanation
Indices: 14916653--14917342 Score: 838
Period size: 126 Copynumber: 5.5 Consensus size: 126
14916643 GATAAAATCA
* * * * * * * *
14916653 AAGCAGGATGAT-TTATCAGAAGGATTTTTGAAGTCGCGCCCTCGTGTACACTCTTTTGCTACAG
1 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAG
* * * *
14916717 TAGGTCCTGGAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGT-TAAAAAAATGCTTC
65 TAGGTCCTAGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTTC
* ** ** *
14916778 AAGTAGGATGCT-TTATGAGAAGAATTTGTGAAATCATGCCCTTGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAG
* * * * * *
14916842 TTGGTCCTGGAAGAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTTTAAAAAAATGCTTC
65 TAGGTCCTAGAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTTC
* * * *
14916905 AAGCAGGATGCT-TTATGAAAAGAATTTGTGAAATCGCGCCCACATGGACGCACTTTTGCTACAG
1 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAG
* * *
14916969 TAGGTCCT-GAAAAAAAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGC
65 TAGGTCCTAGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTTC
** ** *
14917030 AAGCAATATGCTATTTGAGAAGAATTTGTGAAATCATGCCCACGTGGACACGCTTTTGCTGCAGT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAGT
* * * *
14917095 AGGTCCTAGAAAAATAATTTCGACTTAATGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTAGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTTC
* * *
14917156 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTATAGT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAGT
* *
14917221 AGGTCCTAGAAAAATAATTTCGACTTGACGTTTCTTAGCAAATAGTATAAAATC-A--CTTC
66 AGGTCCTAGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA-CAACGCTTC
* * * *
14917280 TAGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCACCCACGTGGTCACGCTTTTGCTACA
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACA
14917343 ATAGCATGTT
Statistics
Matches: 496, Mismatches: 64, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
124 59 0.12
125 166 0.33
126 193 0.39
127 78 0.16
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (126 bp):
AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAGT
AGGTCCTAGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTTC
Found at i:14920927 original size:43 final size:42
Alignment explanation
Indices: 14920800--14921675 Score: 343
Period size: 43 Copynumber: 20.0 Consensus size: 42
14920790 TCAAATTATA
* * *
14920800 TTTAAGTTAAGGGCTAGGGTTTTTAAGTTAAGTGTCT-GGGTT
1 TTTAAGTTAAGGG-TTGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * *
14920842 TTTTATTTAAGGGTTACGATTTTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
14920884 TTTAATTTAAGGGCTGCGGTTTTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTG-GGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * * * * *
14920927 TTAAAGTTAAAGGTTAGAGTTTTCAATTTAAAGG-TTACGATT
1 TTTAAGTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
14920969 TTTAAGTTAAGGGTTTAAGGTTTTAAAGTTAAGTG-TTAGGGTT
1 TTTAAGTTAAGGG-TT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
14921012 TTTAATTTAAGGGTTATGATTTTTAAATTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
14921055 TTAAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * **
14921098 TTTAAGTTAAAGGTTTAGGGTTTTTAGGTTAAAAG-TTAGGGTT
1 TTTAAGTT-AAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* ** *
14921141 TTTAATTTATAGATTTAGGG-TTTTAAGGTTTTAGGGTTTTA-GGTT
1 TTTAAGTTA-AGGGTT-GGGTTTTTAA-G-TTAAGGG-TTTAGGGTT
* * * ** *
14921186 TTTAATTTAATGGTTTAGGGTTCTTAAGTTAAAAGTTTAGGG-G
1 TTTAAGTTAA-GGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * **
14921229 TTT-AG----GGTTTAGAGTTTTTAATTTAAAGG-TTACAGTT
1 TTTAAGTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * ***
14921266 TTTAATTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTGCATTTTT
1 TTTAAGTT-AAGGGTT-GGGTTTTTAAGTTAAGGGTT-TAGGGTT
* * * *
14921311 TAAGTTAAGGGTTTAAGGTTTAGGGTTTTAAAGTTAAGTGCTTAGGGTT
1 T---TTAA--G-TTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
14921360 TTTAATTTAAGGGTTTAGGGTTTTAAAGTTGAGGG-TTAGGGCT
1 TTTAAGTTAAGGG-TT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* ** * *
14921403 TTTAATTTAAAGTTTTAGGGTTTTTATGTTAAGGGTTTAAGGTT
1 TTTAAGTT-AAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * * *
14921447 TTTAAGTTAATGGTTAAGATTTTTAATTTATGGATTTAGGG-T
1 TTTAAGTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * *
14921489 TTTAGGGTTTAGAGTT--TTTAATTTAAAGGTTTAAGGTTTTAGGGGTTTAGGATT
1 TTTA-AGTTAAGGGTTGGGTT--TTT-AA-G-TTAAGGGTTTA-GGG-------TT
14921543 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTATT
1 TTTAAGTTAAGGG-TT-GGGTTTTTAAGTTAAGGGTTTAGGG--TT
** * *
14921588 TTTTTGATAAAAAGGGTTAGGGTATTTAAGTTAAGGGTTTAGGGTT
1 TTTAAG-T--TAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
14921634 TTTAAGTTAAGAGTTAGAGTTTTTAAGTTTAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAGGGTT
14921676 AGGGTTTTTA
Statistics
Matches: 642, Mismatches: 135, Indels: 114
0.72 0.15 0.13
Matches are distributed among these distances:
36 4 0.01
37 23 0.04
38 1 0.00
40 2 0.00
41 2 0.00
42 114 0.18
43 263 0.41
44 69 0.11
45 43 0.07
46 22 0.03
47 20 0.03
48 15 0.02
49 4 0.01
50 28 0.04
51 5 0.01
52 6 0.01
53 7 0.01
54 9 0.01
55 3 0.00
57 2 0.00
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (42 bp):
TTTAAGTTAAGGGTTGGGTTTTTAAGTTAAGGGTTTAGGGTT
Found at i:14920955 original size:64 final size:63
Alignment explanation
Indices: 14920803--14921476 Score: 461
Period size: 64 Copynumber: 10.4 Consensus size: 63
14920793 AATTATATTT
* * * * * * * *
14920803 AAGTTAAGGGCTAGGGTTTTTAAGTTAAGTGTCTGGGTTTTTTATTTAAGGG-TTACGATTTTA
1 AAGTTAAAGGTTAGGGTTTTTAATTTAAGGGT-TGGGTTTTTAAGTTAAGGGTTTAAGGTTTTA
* *
14920866 AAGTTAAGGGTTAGGGTTTTTAATTTAAGGGCTGCGGTTTTTAAGTTAAGGGTTTAAGGTTTTA
1 AAGTTAAAGGTTAGGGTTTTTAATTTAAGGGTTG-GGTTTTTAAGTTAAGGGTTTAAGGTTTTA
* * * * *
14920930 AAGTTAAAGGTTAGAGTTTTCAATTTAAAGGTTACGATTTTTAAGTTAAGGGTTTAAGGTTTTA
1 AAGTTAAAGGTTAGGGTTTTTAATTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAAGGTTTTA
* * * *
14920994 AAGTT-AAGTGTTAGGGTTTTTAATTTAAGGGTTATGATTTTTAAATTAAGGGTTTAGGGTTTTA
1 AAGTTAAAG-GTTAGGGTTTTTAATTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAAGGTTTTA
* * * *
14921058 AAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTTAGGGTTTTTAAGTTAAAGGTTTAGGGTTTTT
1 AAGTTAAAGGTTAGGGTTTTTAATTTAAGGG-TT-GGGTTTTTAAGTTAAGGGTTTAAGGTTTTA
* * ** * *
14921123 AGGTTAAAAGTTAGGGTTTTTAATTTATAGATTTAGGG-TTTTAAGGTTTTAGGGTTTTAGGTTT
1 AAGTTAAAGGTTAGGGTTTTTAATTTA-AGGGTT-GGGTTTTTAA-G-TTAAGGGTTTAAGGTTT
*
14921187 TT
62 TA
* * * * * * *
14921189 AATTTAATGGTTTAGGGTTCTTAAGTTAAAAGTTTAGGG-------GTTTAGGGTTT-AGAGTTT
1 AAGTTAAAGG-TTAGGGTTTTTAA-TTTAAGGGTT-GGGTTTTTAAGTTAAGGGTTTAAG-GTTT
*
14921246 TT
62 TA
* ** * ** **
14921248 AATTTAAAGGTTACAGTTTTTAATTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTGCATTTTTTA
1 AAGTTAAAGGTTAGGGTTTTTAATTT-AAGGGTT-GGGTTTTTAAGTTAAGGGTTTAAGGTTTT-
14921313 A
63 A
* * * * * *
14921314 GTTAAGGGTTTAAGGTTTAGGGTTTTAAAGTTAAGTGCTTAGGGTTTTTAATTTAAGGGTTTAGG
1 ---AA--GTTAAAGG-TTAGGGTTTTTAATTTAAG-GGTT-GGGTTTTTAAGTTAAGGGTTTAAG
14921379 GTTTTA
58 GTTTTA
* * * ** * *
14921385 AAGTTGAGGGTTAGGGCTTTTAATTTAAAGTTTTAGGGTTTTTATGTTAAGGGTTTAAGGTTTTT
1 AAGTTAAAGGTTAGGGTTTTTAATTT-AAGGGTT-GGGTTTTTAAGTTAAGGGTTTAAGGTTTTA
* * *
14921450 AAGTTAATGGTTAAGATTTTTAATTTA
1 AAGTTAAAGGTTAGGGTTTTTAATTTA
14921477 TGGATTTAGG
Statistics
Matches: 497, Mismatches: 84, Indels: 59
0.78 0.13 0.09
Matches are distributed among these distances:
57 2 0.00
58 22 0.04
59 25 0.05
60 1 0.00
62 2 0.00
63 46 0.09
64 153 0.31
65 137 0.28
66 33 0.07
67 20 0.04
68 5 0.01
69 2 0.00
71 10 0.02
72 39 0.08
ACGTcount: A:0.27, C:0.02, G:0.26, T:0.46
Consensus pattern (63 bp):
AAGTTAAAGGTTAGGGTTTTTAATTTAAGGGTTGGGTTTTTAAGTTAAGGGTTTAAGGTTTTA
Found at i:14921187 original size:7 final size:8
Alignment explanation
Indices: 14921154--14921189 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
14921144 AATTTATAGA
14921154 TTTAGGGT
1 TTTAGGGT
*
14921162 TTTAAGGT
1 TTTAGGGT
14921170 TTTAGGGT
1 TTTAGGGT
*
14921178 TTTAGGTT
1 TTTAGGGT
14921186 TTTA
1 TTTA
14921190 ATTTAATGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.56
Consensus pattern (8 bp):
TTTAGGGT
Found at i:14921189 original size:16 final size:16
Alignment explanation
Indices: 14921154--14921187 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
14921144 AATTTATAGA
14921154 TTTAGGGTTTTAAGGT
1 TTTAGGGTTTTAAGGT
14921170 TTTAGGGTTTT-AGGT
1 TTTAGGGTTTTAAGGT
14921185 TTT
1 TTT
14921188 TAATTTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (16 bp):
TTTAGGGTTTTAAGGT
Found at i:14921223 original size:22 final size:22
Alignment explanation
Indices: 14920800--14921675 Score: 297
Period size: 22 Copynumber: 41.0 Consensus size: 22
14920790 TCAAATTATA
**
14920800 TTTAAGTT-AAGGGCTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
*
14920821 TTTAAGTT-AAGTGTCT-GGGTT
1 TTTAAGTTAAAG-GTTTAGGGTT
* * * * *
14920842 TTTTA-TTTAAGGGTTACGATT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14920863 TTAAAGTT-AAGGGTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* **
14920884 TTTAA-TTTAAGGGCT-GCGGTT
1 TTTAAGTTAAAGGTTTAG-GGTT
* *
14920905 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14920927 TTAAAGTTAAAGG-TTAGAGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* * * *
14920948 TTCAATTTAAAGG-TTACGATT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14920969 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
*
14920991 TTAAAGTT-AA-GTGTTAGGGTT
1 TTTAAGTTAAAGGT-TTAGGGTT
* * * *
14921012 TTTAA-TTTAAGGGTTATGATT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921033 TTTAAATTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921055 TTAAAGTT-AAGGGTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921076 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
14921098 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921120 TTTAGGTTAAAAG-TTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* * *
14921141 TTTAATTTATAGATTTAGGG-T
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921162 TTTAAGGTTTTAGGGTTTTA-GGTT
1 TTTAA-G-TTAAAGG-TTTAGGGTT
* *
14921186 TTTAATTTAATGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* * *
14921208 CTTAAGTTAAAAGTTTAGGG-G
1 TTTAAGTTAAAGGTTTAGGGTT
* * * *
14921229 TTTAGGGTTTAGAGTTTTTA---AT
1 TTTA-AG-TTAAAG-GTTTAGGGTT
* *
14921251 TTAAAGGTTACA-GTTT----TT
1 TTTAA-GTTAAAGGTTTAGGGTT
* * ** *
14921269 AATTT-A---AAGGTTTAGGGTTT
1 --TTTAAGTTAAAGGTTTAGGGTT
* * ***
14921289 T-TAAGTTAAGGGTTGCATTTTT
1 TTTAAGTTAAAGGTT-TAGGGTT
*
14921311 TAAGTTAAGGGTTTAAGGTTTAGGGTT
1 T---TTAA--GTTAAAGGTTTAGGGTT
* *
14921338 TTAAAGTT-AAGTGCTTAGGGTT
1 TTTAAGTTAAAG-GTTTAGGGTT
* *
14921360 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* * * *
14921382 TTAAAGTT-GAGGGTTAGGGCT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921403 TTTAATTTAAAGTTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* * *
14921425 TTTATGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* * *
14921447 TTTAAGTTAATGG-TTAAGATT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921468 TTTAA-TTTATGGATTTAGGG-T
1 TTTAAGTTAAAGG-TTTAGGGTT
*
14921489 TTT-AG-----GGTTTAGAGTT
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921505 TTTAATTTAAAGGTTTAAGG-T
1 TTTAAGTTAAAGGTTTAGGGTT
* *
14921526 TTT-AG----GGGTTTAGGATT
1 TTTAAGTTAAAGGTTTAGGGTT
*
14921543 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
*
14921565 TTTAAGTT-AAGGGTTAGGGTATT
1 TTTAAGTTAAAGGTTTAGGG--TT
** * * *
14921588 TTTTTGATAAAAAGGGTTAGGGTA
1 TTTAAG-T-TAAAGGTTTAGGGTT
*
14921612 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
*
14921634 TTTAAGTT-AAGAG-TTAGAGTT
1 TTTAAGTTAAAG-GTTTAGGGTT
* *
14921655 TTTAAGTT-TAGGGTTAGGGTT
1 TTTAAGTTAAAGGTTTAGGGTT
14921676 AGGGTTTTTA
Statistics
Matches: 632, Mismatches: 154, Indels: 138
0.68 0.17 0.15
Matches are distributed among these distances:
15 7 0.01
16 15 0.02
17 6 0.01
18 5 0.01
19 4 0.01
20 24 0.04
21 245 0.39
22 259 0.41
23 18 0.03
24 23 0.04
26 14 0.02
27 4 0.01
28 8 0.01
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (22 bp):
TTTAAGTTAAAGGTTTAGGGTT
Found at i:14921527 original size:37 final size:38
Alignment explanation
Indices: 14921458--14921566 Score: 127
Period size: 38 Copynumber: 2.9 Consensus size: 38
14921448 TTAAGTTAAT
* *
14921458 GGTTAAGA-TTTTTAATTT-ATGGATTTAGGGTTTTA-G
1 GGTTTAGAGTTTTTAATTTAAAGG-TTTAGGGTTTTAGG
*
14921494 GGTTTAGAGTTTTTAATTTAAAGGTTTAAGGTTTTAGG
1 GGTTTAGAGTTTTTAATTTAAAGGTTTAGGGTTTTAGG
* *
14921532 GGTTTAG-GATTTTTAAGTTAAGGGTTTAGGGTTTT
1 GGTTTAGAG-TTTTTAATTTAAAGGTTTAGGGTTTT
14921567 TAAGTTAAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
36 7 0.11
37 22 0.35
38 34 0.54
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.49
Consensus pattern (38 bp):
GGTTTAGAGTTTTTAATTTAAAGGTTTAGGGTTTTAGG
Found at i:14921696 original size:21 final size:21
Alignment explanation
Indices: 14920800--14921675 Score: 388
Period size: 21 Copynumber: 41.0 Consensus size: 21
14920790 TCAAATTATA
*
14920800 TTTAAGTTAAGGGCTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
14920821 TTTAAGTTAAGTGTCT-GGGTT
1 TTTAAGTTAAGGGT-TAGGGTT
* * * *
14920842 TTTTATTTAAGGGTTACGATT
1 TTTAAGTTAAGGGTTAGGGTT
*
14920863 TTAAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
14920884 TTTAATTTAAGGGCT-GCGGTT
1 TTTAAGTTAAGGGTTAG-GGTT
*
14920905 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* * *
14920927 TTAAAGTTAAAGGTTAGAGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * * * *
14920948 TTCAATTTAAAGGTTACGATT
1 TTTAAGTTAAGGGTTAGGGTT
*
14920969 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
14920991 TTAAAGTTAAGTGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * *
14921012 TTTAATTTAAGGGTTATGATT
1 TTTAAGTTAAGGGTTAGGGTT
*
14921033 TTTAAATTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
*
14921055 TTAAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
14921076 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
*
14921098 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTT
* **
14921120 TTTAGGTTAAAAGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* **
14921141 TTTAATTTATAGATTTAGGG-T
1 TTTAAGTTA-AGGGTTAGGGTT
*
14921162 TTTAAGGTTTTAGGGTTTTA-GGTT
1 TTTAA-G-TTAAGGG--TTAGGGTT
* *
14921186 TTTAATTTAATGGTTTAGGGTT
1 TTTAAGTTAA-GGGTTAGGGTT
* * * *
14921208 CTTAAGTTAAAAGTTTAGGG-G
1 TTTAAGTT-AAGGGTTAGGGTT
* *
14921229 TTT-AG----GGTTTAGAGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * **
14921245 TTTAATTTAAAGGTTACAGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
14921266 TTTAATTTAAAGGTTTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTT
**
14921288 TTTAAGTTAAGGGTT-GCATTT
1 TTTAAGTTAAGGGTTAG-GGTT
*
14921309 TTTAAGTTAAGGGTTTAAGG--
1 TTTAAGTTAAGGG-TTAGGGTT
* * * *
14921329 TTTAGGGTTTTAA-AGTTA-AGTG
1 TTTA-AG--TTAAGGGTTAGGGTT
* * *
14921351 CTTAGGGTTTTTAA--TTTAAGGGTTTAGGGT
1 TTTA-AG---TTAAGGGTT-AGGG--T----T
* *
14921381 TTTAAAGTTGAGGGTTAGGGCT
1 TTT-AAGTTAAGGGTTAGGGTT
* **
14921403 TTTAATTTAAAGTTTTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTT
* *
14921425 TTTATGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* * *
14921447 TTTAAGTTAATGGTTAAGATT
1 TTTAAGTTAAGGGTTAGGGTT
* * *
14921468 TTTAATTTATGGATTTAGGG-T
1 TTTAAGTTAAGG-GTTAGGGTT
* *
14921489 TTT-AG----GGTTTAGAGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * *
14921505 TTTAATTTAAAGGTTTAAGG-T
1 TTTAAGTT-AAGGGTTAGGGTT
*
14921526 TTT-AG----GGGTTTAGGATT
1 TTTAAGTTAAGGG-TTAGGGTT
14921543 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
14921565 TTTAAGTTAAGGGTTAGGGTATT
1 TTTAAGTTAAGGGTTAGGG--TT
** * *
14921588 TTTTTGATAAAAAGGGTTAGGGTA
1 TTTAAG-T--TAAGGGTTAGGGTT
14921612 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
14921634 TTTAAGTTAAGAGTTAGAGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
14921655 TTTAAGTTTAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
14921676 AGGGTTTTTA
Statistics
Matches: 646, Mismatches: 141, Indels: 136
0.70 0.15 0.15
Matches are distributed among these distances:
15 15 0.02
16 13 0.02
17 6 0.01
18 2 0.00
20 12 0.02
21 297 0.46
22 230 0.36
23 30 0.05
24 16 0.02
26 12 0.02
27 3 0.00
28 4 0.01
29 2 0.00
30 3 0.00
31 1 0.00
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAGGGTT
Found at i:14925561 original size:21 final size:23
Alignment explanation
Indices: 14925535--14925579 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
14925525 AAAGAGTATC
*
14925535 TACAAATTAA-ATC-TCTAAGAT
1 TACAAAATAATATCTTCTAAGAT
14925556 TACAAAATAATATCTTCTAAGAT
1 TACAAAATAATATCTTCTAAGAT
14925579 T
1 T
14925580 GTATATATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 3 0.14
23 9 0.43
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.36
Consensus pattern (23 bp):
TACAAAATAATATCTTCTAAGAT
Found at i:14925600 original size:21 final size:21
Alignment explanation
Indices: 14925571--14925646 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
14925561 AATAATATCT
14925571 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATATCATA
* *
14925592 TCTAGGATTGCATATATCATA
1 TCTAAGATTGTATATATCATA
**
14925613 TCTAAGATTG--CGTATCATA
1 TCTAAGATTGTATATATCATA
*
14925632 TCTGAGATTGTATAT
1 TCTAAGATTGTATAT
14925647 CCTCGAAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.36
21 29 0.64
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:14925606 original size:19 final size:19
Alignment explanation
Indices: 14925584--14925647 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
14925574 AAGATTGTAT
14925584 ATATCATATCTAGGATTGC
1 ATATCATATCTAGGATTGC
*
14925603 ATATATCATATCTAAGATTGC
1 --ATATCATATCTAGGATTGC
* *
14925624 GTATCATATCT-GAGATTGT
1 ATATCATATCTAG-GATTGC
14925643 ATATC
1 ATATC
14925648 CTCGAAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 19 0.51
21 18 0.49
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (19 bp):
ATATCATATCTAGGATTGC
Found at i:14925962 original size:33 final size:33
Alignment explanation
Indices: 14925904--14925967 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
14925894 ACTCGTAACT
* *
14925904 TTTAATCTGCTTAACTGTAATTTCAGAGAGAGC
1 TTTAATCTGCTTAACTGCAACTTCAGAGAGAGC
*
14925937 TTTAATCTGCTCT-ACTGCAACTTCAGGGAGA
1 TTTAATCTGCT-TAACTGCAACTTCAGAGAGA
14925968 TAAGATTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (33 bp):
TTTAATCTGCTTAACTGCAACTTCAGAGAGAGC
Found at i:14926058 original size:44 final size:43
Alignment explanation
Indices: 14925942--14926456 Score: 179
Period size: 44 Copynumber: 11.9 Consensus size: 43
14925932 AGAGCTTTAA
* * * *
14925942 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTTA-CTT-AG
* *
14925987 TCTGC-CTCACTACAACTTCAGG-GGATAAGACTTGTTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGAAGATAAGACTTG-TTACTTAG
* * * *
14926030 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTGGAT-GTGA-
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTTACTTAG
* * **
14926071 TTTGCT-CTCTGCAACTTCA-GAGAGATAAGATCCAAGGTT--TT-G
1 TCTGCTCCACTGCAACTTCAGGA-AGATAAGA--C-TTGTTACTTAG
* * * * ** *
14926113 ATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTATCGGCTCTAA
1 -TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGT-TACT-TAG
* * * * **
14926158 TATGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTTA-CTT-AG
* * * * *
14926203 TCTAC-CTCACTACAACTTCAGGAGGATAAGACTTGCTTGCTGAG
1 TCTGCTC-CACTGCAACTTCAGGAAGATAAGACTTG-TTACTTAG
* * * * * *
14926247 TCTACTCCACTGCAACTTTAGGGAGATAAGACTAGATACGT--
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTTACTTAG
* ** *
14926288 TCTGCT-CTCTGCAACTTCA-GAGAGATAAGATCCAAGGTT--TTAA
1 TCTGCTCCACTGCAACTTCAGGA-AGATAAGA--C-TTGTTACTTAG
* * * *
14926331 TCTGCTCCACTGCAACTTCAAGAAGATAGGATTATCGGTT--TTAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACT-T--GTTACTTAG
* * * ** *
14926375 TCTGCTCTACTGCAACTTC-CGAGAGATAAGATTTGCCATCTTCAA
1 TCTGCTCCACTGCAACTTCAGGA-AGATAAGACTTGTTA-CTT-AG
* *
14926420 TCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGTT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTT
14926457 GGCTTAAATC
Statistics
Matches: 350, Mismatches: 80, Indels: 80
0.69 0.16 0.16
Matches are distributed among these distances:
39 3 0.01
40 40 0.11
41 12 0.03
42 5 0.01
43 43 0.12
44 159 0.45
45 86 0.25
46 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTTACTTAG
Found at i:14926324 original size:217 final size:217
Alignment explanation
Indices: 14925939--14926454 Score: 784
Period size: 217 Copynumber: 2.4 Consensus size: 217
14925929 GAGAGAGCTT
*
14925939 TAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTACAACT
1 TAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACT
* * * * *
14926004 TCAGG-GGATAAGACTTGTTTACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTGGATG
66 TCAGGAGGATAAGACTTGCTTACTGAGTCTACTCCACTGCAACTTCAGGAAGATAAGACTAGATA
* *
14926068 TGATTTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTGATCCGCTCCACTGCAACTTC
131 CGATTTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTC
* *
14926133 AGGGAGATAGGATTATCGGCTC
196 AAGAAGATAGGATTATCGGCTC
* * * *
14926155 TAATATGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTACAACT
1 TAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACT
* * *
14926220 TCAGGAGGATAAGACTTGCTTGCTGAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTAGATA
66 TCAGGAGGATAAGACTTGCTTACTGAGTCTACTCCACTGCAACTTCAGGAAGATAAGACTAGATA
*
14926285 CG-TTCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCTGCTCCACTGCAACTT
131 CGATT-TGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTT
* *
14926349 CAAGAAGATAGGATTATCGGTTT
195 CAAGAAGATAGGATTATCGGCTC
* * * * *
14926372 TAATCTGCTCTACTGCAACTTCCGAGAGATAAGATTTGCCATCTTCAATCTGCCCCACTGCAACT
1 TAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACT
14926437 TCAGGAGGATAAGACTTG
66 TCAGGAGGATAAGACTTG
14926455 TTGGCTTAAA
Statistics
Matches: 269, Mismatches: 29, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
216 67 0.25
217 202 0.75
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (217 bp):
TAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACT
TCAGGAGGATAAGACTTGCTTACTGAGTCTACTCCACTGCAACTTCAGGAAGATAAGACTAGATA
CGATTTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTC
AAGAAGATAGGATTATCGGCTC
Found at i:14926467 original size:45 final size:44
Alignment explanation
Indices: 14926329--14926470 Score: 124
Period size: 45 Copynumber: 3.2 Consensus size: 44
14926319 CCAAGGTTTT
* * * * *
14926329 AATCTGCTCCACTGCAACTTCAAGAAGATAGGATTATCGGTTTT
1 AATCTGCTCCACTGCAACTTCAAGAGGATAAGATTGTCGGCTTA
* * * ** *
14926373 AATCTGCTCTACTGCAACTTC-CGAGAGATAAGATTTGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAAGAG-GATAAGA-TTGTCGGCTTA
* * *
14926418 AATCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGTTGGCTTA
1 AATCTGCTCCACTGCAACTTCAAGAGGATAAGA-TTGTCGGCTTA
14926463 AATCTGCT
1 AATCTGCT
14926471 TCCCACTATC
Statistics
Matches: 75, Mismatches: 20, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
43 2 0.03
44 26 0.35
45 44 0.59
46 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAAGAGGATAAGATTGTCGGCTTA
Found at i:14926535 original size:44 final size:44
Alignment explanation
Indices: 14926397--14926671 Score: 132
Period size: 44 Copynumber: 6.2 Consensus size: 44
14926387 CAACTTCCGA
* * * **
14926397 GAGATAAGATTTGCCATCTTCAATCTGCCCCACTGCAACTTCA-G
1 GAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTT-AGG
* ** * *
14926441 GAGGATAAGACTTGTTGGCTTAAATCTGCTTCCCACTA-T-CTT-GG
1 GA-GATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG
* *
14926485 AAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 -GAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGG
* * ** * * * * * *
14926530 GAGATAAGATCTACAATCTTTAACCTACTCCGCTGCTGCTCAGG
1 GAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGG
* ** ** * * *
14926574 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GAA
1 GAGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAG-G
* * *
14926618 AAGATAAGATTTGCCGTCTTCGATCTGTTCCACTACTGCTTAGG
1 GAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGG
14926662 GAGATAAGAT
1 GAGATAAGAT
14926672 CTACAATCTT
Statistics
Matches: 161, Mismatches: 56, Indels: 28
0.66 0.23 0.11
Matches are distributed among these distances:
42 12 0.07
43 5 0.03
44 106 0.66
45 29 0.18
46 4 0.02
47 5 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
GAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGG
Found at i:14926603 original size:132 final size:132
Alignment explanation
Indices: 14926451--14926721 Score: 488
Period size: 132 Copynumber: 2.1 Consensus size: 132
14926441 GAGGATAAGA
* *
14926451 CTTGTTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTCGATCTGCTC
*
14926516 CACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGCTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCACTGCTGCTCAGGGAGACAA
14926581 GG
131 GG
*
14926583 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTCGATCTGTTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTCGATCTGCTC
*
14926648 CACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCATTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCACTGCTGCTCAGGGAGACAA
14926713 GG
131 GG
*
14926715 TTTGGTG
1 CTTGGTG
14926722 TTTCACCGGT
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 133 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (132 bp):
CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTCGATCTGCTC
CACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCACTGCTGCTCAGGGAGACAA
GG
Found at i:14928001 original size:8 final size:8
Alignment explanation
Indices: 14927988--14928013 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
14927978 TCCATTTTAC
14927988 TTTTTCAT
1 TTTTTCAT
14927996 TTTTTCAT
1 TTTTTCAT
14928004 TTTTTCAT
1 TTTTTCAT
14928012 TT
1 TT
14928014 CGTCATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTCAT
Done.