Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24583705
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1509421 characters in sequence are not A, C, G, or T
File 70 of 75
Found at i:22785338 original size:13 final size:13
Alignment explanation
Indices: 22785320--22785352 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
22785310 TCTGTATATT
22785320 TGTATCTATTATA
1 TGTATCTATTATA
22785333 TGTATCTATTATA
1 TGTATCTATTATA
*
22785346 TTTATCT
1 TGTATCT
22785353 GTATATGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (13 bp):
TGTATCTATTATA
Found at i:22795822 original size:13 final size:13
Alignment explanation
Indices: 22795804--22795830 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22795794 GATTTTCATT
22795804 TTATTTTGTTTTA
1 TTATTTTGTTTTA
22795817 TTATTTTGTTTTA
1 TTATTTTGTTTTA
22795830 T
1 T
22795831 ACCCTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (13 bp):
TTATTTTGTTTTA
Found at i:22797471 original size:107 final size:107
Alignment explanation
Indices: 22797244--22797441 Score: 294
Period size: 105 Copynumber: 1.9 Consensus size: 107
22797234 AAAAATAATA
* * * *
22797244 AAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTC
1 AAGGCAATGTTTTACGTTTGAAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA-TTTTC
22797309 TCGTTCAACCAAATAGCAGAATATCCTTCCAAAACTTTCAAAT
65 TCGTTCAACCAAATAGCAGAATATCCTTCCAAAACTTTCAAAT
* *
22797352 AAGGCAATGTTTTACGTTTGAAAATTCGAG-GAACGTGCCCTAATGTGTTGGGTTTCGA-TTTCT
1 AAGGCAATGTTTTACGTTTGAAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
*
22797415 CGTTTAACCAAATAGTCA-AATATCCTT
66 CGTTCAACCAAATAG-CAGAATATCCTT
22797442 TTGAATTTCA
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
105 28 0.34
106 2 0.02
107 26 0.32
108 26 0.32
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (107 bp):
AAGGCAATGTTTTACGTTTGAAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
CGTTCAACCAAATAGCAGAATATCCTTCCAAAACTTTCAAAT
Found at i:22800797 original size:7 final size:7
Alignment explanation
Indices: 22800785--22800819 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
22800775 ATTCCATAAA
22800785 AAAAAAG
1 AAAAAAG
22800792 AAAAAAG
1 AAAAAAG
22800799 AAGGAAAAG
1 AA--AAAAG
22800808 AAAAAAG
1 AAAAAAG
22800815 AAAAA
1 AAAAA
22800820 TCAAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 19 0.73
9 7 0.27
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:22800879 original size:12 final size:12
Alignment explanation
Indices: 22800858--22800896 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
22800848 AATCAAATTC
*
22800858 AAAAATAAGAGA
1 AAAAAAAAGAGA
22800870 AAAAAAAAGAGA
1 AAAAAAAAGAGA
22800882 AAAAGAAAAGA-A
1 AAAA-AAAAGAGA
22800894 AAA
1 AAA
22800897 GGAGAGGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 19 0.76
13 6 0.24
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (12 bp):
AAAAAAAAGAGA
Found at i:22803197 original size:95 final size:95
Alignment explanation
Indices: 22803034--22803683 Score: 750
Period size: 95 Copynumber: 6.8 Consensus size: 95
22803024 AAACCATAGA
* *
22803034 TGGCAATTAAAAAGATTGAAGCTACAATAGCGGATCTTACTTTCCTA-TCGTTGCAATGGAACAG
1 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGT-GTTGCAGTGGAACAG
* *
22803098 ATTGAAGCTATAGCAGCGGATCTTACTTCCC
65 ATTGAAGCTACAGCAGCGGATCTTGCTTCCC
* * * *
22803129 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGTGTTGTAGTGAAACGGA
1 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGA
22803194 TTGAAGCTACAGCAGCGGATCTTGCTTCCC
66 TTGAAGCTACAGCAGCGGATCTTGCTTCCC
* * * ** **
22803224 TGACAGTTAAAAAGATTGAAACTACAACAGCGGATCTTACTTTCCTAGCATTATAGTGGAACAGA
1 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGA
22803289 TTGAAGCTACAGCAGCGGATCTTGCTTCCC
66 TTGAAGCTACAGCAGCGGATCTTGCTTCCC
* * * *
22803319 CGGTAGTTAAAAAGATTGAAGCTAAAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGA
1 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGA
*
22803384 TTGAAGCTACAACAGCGGATCTTGCTTCCC
66 TTGAAGCTACAGCAGCGGATCTTGCTTCCC
* * * * * *
22803414 CGGCAGTTAAAAAGATTGAAGTTACAACAGCGGATCTTATTTTCCTAGTGTTGCAGTGAAACGGA
1 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGA
22803479 TTGAAGCTACAGCAGCGGATCTTGCTTCCC
66 TTGAAGCTACAGCAGCGGATCTTGCTTCCC
* * * * * * * * * *
22803509 TAGCAATTCAAAAGATCGAAGCCACAACAGCGAATCTTAC-TTCCCAGGCGATGCAGCGGAACAA
1 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GTGTTGCAGTGGAACAG
* * **
22803573 ATTGAAGCTAC-GACAGCGAAACTCACTTCCTCGAC
65 ATTGAAGCTACAG-CAGCGGATCTTGCTT-C-C--C
* * * * * * * * *
22803608 ATTGCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTAC-TTCCCAGGCGATGCAGCGGAACA
1 -TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GTGTTGCAGTGGAACA
22803672 GATTGAAGCTAC
64 GATTGAAGCTAC
22803684 GACGGTGAAT
Statistics
Matches: 489, Mismatches: 58, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
94 6 0.01
95 408 0.83
96 2 0.00
97 1 0.00
99 1 0.00
100 71 0.15
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (95 bp):
TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGA
TTGAAGCTACAGCAGCGGATCTTGCTTCCC
Found at i:22803579 original size:285 final size:285
Alignment explanation
Indices: 22803040--22803583 Score: 835
Period size: 285 Copynumber: 1.9 Consensus size: 285
22803030 TAGATGGCAA
* *
22803040 TTAAAAAGATTGAAGCTACAATAGCGGATCTTACTTTCCTATCGTTGCAATGGAACAGATTGAAG
1 TTAAAAAGATTGAAGCTAAAACAGCGGATCTTACTTTCCTATCGTTGCAATGGAACAGATTGAAG
* * *
22803105 CTATAGCAGCGGATCTTACTTCCCTGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATT
66 CTACAACAGCGGATCTTACTTCCCCGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATT
* *
22803170 TTCCTAGTGTTGTAGTGAAACGGATTGAAGCTACAGCAGCGGATCTTGCTTCCCTGACAGTTAAA
131 TTCCTAGTGTTGCAGTGAAACGGATTGAAGCTACAGCAGCGGATCTTGCTTCCCTGACAATTAAA
* * * * * * *
22803235 AAGATTGAAACTACAACAGCGGATCTTACTTTCCTAGCATTATAGTGGAACAGATTGAAGCTACA
196 AAGATCGAAACCACAACAGCGAATCTTACTTTCCCAGCATTACAGCGGAACAAATTGAAGCTACA
22803300 GCAGCGGATCTTGCTTCCCCGGTAG
261 GCAGCGGATCTTGCTTCCCCGGTAG
*
22803325 TTAAAAAGATTGAAGCTAAAACAGCGGATCTTACTTTCCTAGT-GTTGCAGTGGAACAGATTGAA
1 TTAAAAAGATTGAAGCTAAAACAGCGGATCTTACTTTCCTA-TCGTTGCAATGGAACAGATTGAA
* * *
22803389 GCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGTTACAACAGCGGATCTTAT
65 GCTACAACAGCGGATCTTACTTCCCCGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTAT
*
22803454 TTTCCTAGTGTTGCAGTGAAACGGATTGAAGCTACAGCAGCGGATCTTGCTTCCCT-AGCAATTC
130 TTTCCTAGTGTTGCAGTGAAACGGATTGAAGCTACAGCAGCGGATCTTGCTTCCCTGA-CAATTA
* *
22803518 AAAAGATCGAAGCCACAACAGCGAATCTTAC-TTCCCAGGCGA-TGCAGCGGAACAAATTGAAGC
194 AAAAGATCGAAACCACAACAGCGAATCTTACTTTCCCA-GC-ATTACAGCGGAACAAATTGAAGC
22803581 TAC
257 TAC
22803584 GACAGCGAAA
Statistics
Matches: 234, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
284 6 0.03
285 226 0.97
286 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (285 bp):
TTAAAAAGATTGAAGCTAAAACAGCGGATCTTACTTTCCTATCGTTGCAATGGAACAGATTGAAG
CTACAACAGCGGATCTTACTTCCCCGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATT
TTCCTAGTGTTGCAGTGAAACGGATTGAAGCTACAGCAGCGGATCTTGCTTCCCTGACAATTAAA
AAGATCGAAACCACAACAGCGAATCTTACTTTCCCAGCATTACAGCGGAACAAATTGAAGCTACA
GCAGCGGATCTTGCTTCCCCGGTAG
Found at i:22803590 original size:50 final size:50
Alignment explanation
Indices: 22803526--22804284 Score: 221
Period size: 50 Copynumber: 15.4 Consensus size: 50
22803516 TCAAAAGATC
*
22803526 GAAGCCACAACAGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
* * * * * * ****
22803576 GAAGCTACGACAGCGAAACTCACTTCCTC-GAC-ATTGCAATTCAA-AAGATT
1 GAAGCCACAACGGCGAATCTTACTTCC-CAGGCGA-TGCAGCGGAACAA-ATT
*
22803626 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
* * * * * * **** *
22803676 GAAGCTACGACGGTGAATCTCACTTCCTC-GAC-ATTGAAATTCAA-AAGATC
1 GAAGCCACAACGGCGAATCTTACTTCC-CAGGCGA-TGCAGCGGAACAA-ATT
* * *
22803726 GAAGCCACAACGGTGAATCTTACTT-CTAGGCGATGCAGCGGAACAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
* * ** * * ****
22803775 GAAGCTACGACGGCGAATCTCCCTTCCTC-GAC-ATTGTAATTCAA-AAGATT
1 GAAGCCACAACGGCGAATCTTACTTCC-CAGGCGA-TGCAGCGGAACAA-ATT
* *
22803825 GAAGCCACAACGGTGAATCTTACTTCCCAGGTGATGCAGCGG-------T
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
* * * ** * **** *
22803868 GAAGCTACGACGGCAAATCTCCCTTCCTC-GAC-ATTGCAATTCAA-AAGATC
1 GAAGCCACAACGGCGAATCTTACTTCC-CAGGCGA-TGCAGCGGAACAA-ATT
* * * *
22803918 GAAGCCACAACGGTGAATCTTACATCCCAGGCGATGCAGCAGAACAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
* * * * * * ***
22803968 GAAGCTACGACGGCAAATCTCACTTCCCCGAC-ATTGCA-ATTAA-AATATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGA-TGCAGCGGAACAA-ATT
** * * *
22804017 GAAGCCACAACGGTAAATCTTACTT-CTAGGCGATGCAGCAGAACATATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
* * * * * * * *** *
22804066 AAAGCTACGACGGTGAATCTTGCTTCCCCGAC-ATTGCAGTTTCAA-AGATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGA-TGCAG-CGGAACAAATT
* * * *
22804116 GAAGCTACAACGGCGAATCTTACCTT-TCAGGCGGTGCAGCGGAACAGATT
1 GAAGCCACAACGGCGAATCTTA-CTTCCCAGGCGATGCAGCGGAACAAATT
* * * * * ****
22804166 GAAGCTACAACGACGAATCCTGCTTCCCCGGC-ATTGCAATTTAA-AAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGA-TGCAGCGGAACAA-ATT
* * * * * *
22804216 GAGGCTACAACGACGAATCTTAC-TCCCAAGCGATGC-GACGGAATAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAG-CGGAACAAATT
* * *
22804265 GAAGCTACGACGGTGAATCT
1 GAAGCCACAACGGCGAATCT
22804285 CGTTTCCCCA
Statistics
Matches: 495, Mismatches: 167, Indels: 95
0.65 0.22 0.13
Matches are distributed among these distances:
42 1 0.00
43 27 0.05
44 1 0.00
48 8 0.02
49 130 0.26
50 316 0.64
51 12 0.02
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (50 bp):
GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
Found at i:22803642 original size:100 final size:100
Alignment explanation
Indices: 22803511--22804519 Score: 1064
Period size: 100 Copynumber: 10.2 Consensus size: 100
22803501 TGCTTCCCTA
* * *
22803511 GCAATTCAAAAGATCGAAGCCACAACAGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* *
22803576 GAAGCTACGACAGCGAAACTCACTTCCTCGACATT
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATT
22803611 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
*
22803676 GAAGCTACGACGGTGAATCTCACTTCCTCGACATT
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATT
* * * *
22803711 GAAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTT-CTAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
*
22803775 GAAGCTACGACGGCGAATCTCCCTTCCTCGACATT
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATT
* * *
22803810 GTAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGTGATGCAGC-G----G--T
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* *
22803868 GAAGCTACGACGGCAAATCTCCCTTCCTCGACATT
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATT
* * * *
22803903 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACATCCCAGGCGATGCAGCAGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* *
22803968 GAAGCTACGACGGCAAATCTCACTTCCCCGACATT
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATT
* ** * * *
22804003 GCAATT-AAAATATTGAAGCCACAACGGTAAATCTTACTT-CTAGGCGATGCAGCAGAACATATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * ** *
22804066 AAAGCTACGACGGTGAATCTTGCTTCCCCGACATT
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATT
* * * *
22804101 GCAGTTTC-AAAGATTGAAGCTACAACGGCGAATCTTACCTT-TCAGGCGGTGCAGCGGAACAGA
1 GCA-ATTCAAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCCCAGGCGATGCAGCGGAACAGA
* * * * *
22804164 TTGAAGCTACAACGACGAATC-CTGCTTCCCCGGCATT
64 TTGAAGCTACGACGGCGAATCTC-ACTTCCTCGACATT
* * * * * *
22804201 GCAATTTAAAAGATTGAGGCTACAACGACGAATCTTAC-TCCCAAGCGATGC-GACGGAATAGAT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAG-CGGAACAGAT
* ** * * *
22804264 TGAAGCTACGACGGTGAATCTCGTTTCCCCAATATT
65 TGAAGCTACGACGGCGAATCTCACTTCCTCGACATT
* ** * * * * * *
22804300 GCAATTTAAAAGATTGAAGCTGCAATGGTGAATCTTACTTTCTAGGCGGTGCAACGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * ***
22804365 GAAGCTACAACGGCGGATCTTGTTTGCC-CGACATT
66 GAAGCTACGACGGCGAATCTCACTT-CCTCGACATT
**** * ** * * * * *
22804400 ATGGTT-AAATAGATTGAGGCCACAACTACGAATCTTACTTTCCCTGGCGGTGTAGTGGAATAGA
1 GCAATTCAAA-AGATTGAAGCCACAACGGCGAATCTTAC-TTCCCAGGCGATGCAGCGGAACAGA
* * *
22804464 TTGAAGCTACGACAGCGAATCTTACTTTCTCGACATT
64 TTGAAGCTACGACGGCGAATCTCACTTCCTCGACATT
*
22804501 GCAATT-AAACATATTGAAG
1 GCAATTCAAA-AGATTGAAG
22804520 AAGCCAATCC
Statistics
Matches: 774, Mismatches: 113, Indels: 43
0.83 0.12 0.05
Matches are distributed among these distances:
93 86 0.11
94 1 0.00
95 1 0.00
98 58 0.07
99 234 0.30
100 333 0.43
101 61 0.08
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (100 bp):
GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
GAAGCTACGACGGCGAATCTCACTTCCTCGACATT
Found at i:22803803 original size:199 final size:198
Alignment explanation
Indices: 22803511--22804506 Score: 1082
Period size: 199 Copynumber: 5.0 Consensus size: 198
22803501 TGCTTCCCTA
* * * *
22803511 GCAATTCAAAAGATCGAAGCCACAACAGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATT
1 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTT-CTAGGCGATGCAGCGGAACAGATT
* * *
22803576 GAAGCTACGACAGCGAAACTCACTTCCTCGACATTGCAATTCAAAAGATTGAAGCCACAACGGCG
65 GAAGCTACGACGGCGAATCTCACTTCCCCGACATTGCAATT-AAAAGATTGAAGCCACAACGGCG
22803641 AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCTCG
129 AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCTCG
22803706 ACATT
194 ACATT
*
22803711 GAAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTTCTAGGCGATGCAGCGGAACAGATTG
1 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTTCTAGGCGATGCAGCGGAACAGATTG
* * * *
22803776 AAGCTACGACGGCGAATCTCCCTTCCTCGACATTGTAATTCAAAAGATTGAAGCCACAACGGTGA
66 AAGCTACGACGGCGAATCTCACTTCCCCGACATTGCAATT-AAAAGATTGAAGCCACAACGGCGA
* ** *
22803841 ATCTTACTTCCCAGGTGATGCAGC-G----G--TGAAGCTACGACGGCAAATCTCCCTTCCTCGA
130 ATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCTCGA
22803899 CATT
195 CATT
* * *
22803903 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACATCCCAGGCGATGCAGCAGAACAGATT
1 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTAC-TTCTAGGCGATGCAGCGGAACAGATT
* * **
22803968 GAAGCTACGACGGCAAATCTCACTTCCCCGACATTGCAATTAAAATATTGAAGCCACAACGGTAA
65 GAAGCTACGACGGCGAATCTCACTTCCCCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGA
* * * * ** *
22804033 ATCTTACTT-CTAGGCGATGCAGCAGAACATATTAAAGCTACGACGGTGAATCTTGCTTCCCCGA
130 ATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCTCGA
22804097 CATT
195 CATT
* * * * *
22804101 GCAGTTTC-AAAGATTGAAGCTACAACGGCGAATCTTACCTT-TCAGGCGGTGCAGCGGAACAGA
1 GCA-ATTCAAAAGATCGAAGCCACAACGGTGAATCTTA-CTTCT-AGGCGATGCAGCGGAACAGA
* * * * * *
22804164 TTGAAGCTACAACGACGAATC-CTGCTTCCCCGGCATTGCAATTTAAAAGATTGAGGCTACAACG
63 TTGAAGCTACGACGGCGAATCTC-ACTTCCCCGACATTGCAA-TTAAAAGATTGAAGCCACAACG
* * * **
22804228 ACGAATCTTAC-TCCCAAGCGATGC-GACGGAATAGATTGAAGCTACGACGGTGAATCTCGTTTC
126 GCGAATCTTACTTCCCAGGCGATGCAG-CGGAACAGATTGAAGCTACGACGGTGAATCTCACTTC
* * *
22804291 CCCAATATT
190 CTCGACATT
* * ** * * *
22804300 GCAATTTAAAAGATTGAAGCTGCAATGGTGAATCTTACTTTCTAGGCGGTGCAACGGAACAGATT
1 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTAC-TTCTAGGCGATGCAGCGGAACAGATT
* * *** * **** * **
22804365 GAAGCTACAACGGCGGATCTTGTTTGCCCGACATTATGGTTAAATAGATTGAGGCCACAACTACG
65 GAAGCTACGACGGCGAATCTCACTTCCCCGACATTGCAATTAAA-AGATTGAAGCCACAACGGCG
* * * * * * * * *
22804430 AATCTTACTTTCCCTGGCGGTGTAGTGGAATAGATTGAAGCTACGACAGCGAATCTTACTTTCTC
129 AATCTTAC-TTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCTC
22804495 GACATT
193 GACATT
22804501 GCAATT
1 GCAATT
22804507 AAACATATTG
Statistics
Matches: 679, Mismatches: 94, Indels: 45
0.83 0.11 0.06
Matches are distributed among these distances:
191 12 0.02
192 102 0.15
193 60 0.09
194 1 0.00
197 1 0.00
198 123 0.18
199 290 0.43
200 38 0.06
201 51 0.08
202 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (198 bp):
GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTTCTAGGCGATGCAGCGGAACAGATTG
AAGCTACGACGGCGAATCTCACTTCCCCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGAA
TCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCTCGAC
ATT
Found at i:22804065 original size:49 final size:49
Alignment explanation
Indices: 22803918--22804092 Score: 140
Period size: 49 Copynumber: 3.6 Consensus size: 49
22803908 TCAAAAGATC
* * *
22803918 GAAGCCACAACGGTGAATCTTACATCCCAGGCGATGCAGCAGAACAGATT
1 GAAGCCACAACGGTAAATCTTAC-TTCCAGGCGATGCAGCAGAACATATT
* * * * * * * *
22803968 GAAGCTACGACGGCAAATCTCACTTCCCCGAC-ATTGCA--ATTAAAATATT
1 GAAGCCACAACGGTAAATCTTACTT-CCAGGCGA-TGCAGCA-GAACATATT
*
22804017 GAAGCCACAACGGTAAATCTTACTTCTAGGCGATGCAGCAGAACATATT
1 GAAGCCACAACGGTAAATCTTACTTCCAGGCGATGCAGCAGAACATATT
* * * * *
22804066 AAAGCTACGACGGTGAATCTTGCTTCC
1 GAAGCCACAACGGTAAATCTTACTTCC
22804093 CCGACATTGC
Statistics
Matches: 93, Mismatches: 26, Indels: 13
0.70 0.20 0.10
Matches are distributed among these distances:
48 8 0.09
49 58 0.62
50 27 0.29
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (49 bp):
GAAGCCACAACGGTAAATCTTACTTCCAGGCGATGCAGCAGAACATATT
Found at i:22804385 original size:50 final size:50
Alignment explanation
Indices: 22804109--22804385 Score: 177
Period size: 50 Copynumber: 5.6 Consensus size: 50
22804099 TTGCAGTTTC
*
22804109 AAAGATTGAAGCTACAACGGCGAATCTTACCTTT-CAGGCGGTGCAGCGGA
1 AAAGATTGAAGCTACAACGGCGAATCTTA-CTTTCCAGGCGGTGCAACGGA
* * * * * * ** ***
22804159 ACAGATTGAAGCTACAACGACGAATCCTGCTTCCCCGGCATTGCAATTTA
1 AAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAACGGA
* * * * * *
22804209 AAAGATTGAGGCTACAACGACGAATCTTAC-TCCCAAGCGATGCGACGGA
1 AAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAACGGA
* * * **** ***
22804258 ATAGATTGAAGCTACGACGGTGAATC-T-CGTTTCCCCA-ATATTGCAATTTA
1 AAAGATTGAAGCTACAACGGCGAATCTTAC-TTT--CCAGGCGGTGCAACGGA
* * * *
22804308 AAAGATTGAAGCTGCAATGGTGAATCTTACTTTCTAGGCGGTGCAACGGA
1 AAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAACGGA
* *
22804358 ACAGATTGAAGCTACAACGGCGGATCTT
1 AAAGATTGAAGCTACAACGGCGAATCTT
22804386 GTTTGCCCGA
Statistics
Matches: 164, Mismatches: 55, Indels: 16
0.70 0.23 0.07
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 38 0.23
50 116 0.71
51 7 0.04
52 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.23
Consensus pattern (50 bp):
AAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAACGGA
Found at i:22805183 original size:132 final size:132
Alignment explanation
Indices: 22804946--22805257 Score: 434
Period size: 132 Copynumber: 2.4 Consensus size: 132
22804936 GTAATAGACA
* *
22804946 GAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGTAGATTTAAGCCGTTAGTCCTATCAC
1 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCAC
* * * *
22805011 CGTAAGAAGTAGTGGAGTCGGTTCAAGATTGCAGATTCTGTCA-CCCTAAGTAGTAGTGGAGCAG
66 CCTAAGAAGTAGTGGAATAGGTTCAAGATTGCAGATTCTGT-ATCCCTAAGCAGTAGTGGAGCAG
22805075 ATC
130 ATC
*
22805078 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA-TCATATTTAAGCCATTAGTCCTATCA
1 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGT-AGATTTAAGCCATTAGTCCTATCA
* *
22805142 CCCTAAGCAGTAGTGGAATAGG-TCAAAGATTGTAGATTCTGTATCCCTAAGCAGTAGTGGAGCA
65 CCCTAAGAAGTAGTGGAATAGGTTC-AAGATTGCAGATTCTGTATCCCTAAGCAGTAGTGGAGCA
22805206 GATC
129 GATC
* * * * *
22805210 AAAGACGGTGAATCTTATCTTCCCAAGATAGTAGG-GAAGTAAATTTAA
1 GAAGATGGTGAATCTTATCTTCCCAATACAGT-GGAGAAGTAGATTTAA
22805258 ACCACCAACC
Statistics
Matches: 161, Mismatches: 14, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
131 4 0.02
132 154 0.96
133 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (132 bp):
GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCAC
CCTAAGAAGTAGTGGAATAGGTTCAAGATTGCAGATTCTGTATCCCTAAGCAGTAGTGGAGCAGA
TC
Found at i:22806010 original size:13 final size:13
Alignment explanation
Indices: 22805992--22806018 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22805982 GATTTTCATT
22805992 TTATTTTGTTTTA
1 TTATTTTGTTTTA
22806005 TTATTTTGTTTTA
1 TTATTTTGTTTTA
22806018 T
1 T
22806019 ACCCTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (13 bp):
TTATTTTGTTTTA
Found at i:22811597 original size:5 final size:5
Alignment explanation
Indices: 22811587--22811621 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
22811577 AAGTGAGTTG
*
22811587 TTATA TTATA TTATTA TAATA TTATA TTATA TTAT
1 TTATA TTATA TTA-TA TTATA TTATA TTATA TTAT
22811622 TATATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:22811611 original size:21 final size:22
Alignment explanation
Indices: 22811587--22811630 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
22811577 AAGTGAGTTG
22811587 TTATATTATATTATTATA-ATA
1 TTATATTATATTATTATATATA
22811608 TTATATTATATTATTATATATA
1 TTATATTATATTATTATATATA
22811630 T
1 T
22811631 AAATCAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TTATATTATATTATTATATATA
Found at i:22811614 original size:13 final size:13
Alignment explanation
Indices: 22811598--22811632 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
22811588 TATATTATAT
22811598 TATTATAATATTA
1 TATTATAATATTA
*
22811611 TATTATATTATTA
1 TATTATAATATTA
22811624 TATATATAA
1 TAT-TATAA
22811633 ATCAAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTATAATATTA
Found at i:22822183 original size:12 final size:13
Alignment explanation
Indices: 22822155--22822190 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
22822145 TAAAAAGCAT
22822155 AAAAATTATAAAC
1 AAAAATTATAAAC
22822168 AAAAATTATAAA-
1 AAAAATTATAAAC
*
22822180 AAAATTTATAA
1 AAAAATTATAA
22822191 TTAATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAAATTATAAAC
Found at i:22824184 original size:171 final size:171
Alignment explanation
Indices: 22823890--22824225 Score: 566
Period size: 171 Copynumber: 2.0 Consensus size: 171
22823880 ATGATTTTCC
* * *
22823890 TTTGCTATGGGAGATACAAACTTTTGACCTGAGGATGTAGGATCTAGAGAAGCAGGAGAAAGGGA
1 TTTGCCATGGGAGATACAAACTTCTGACCTGAGGATGGAGGATCTAGAGAAGCAGGAGAAAGGGA
*
22823955 GCTGCTACAATTACGATCCCGTAACTGATCCATCTCAACATGTGAAGGTGGCACAGGATCATGGG
66 GCTACTACAATTACGATCCCGTAACTGATCCATCTCAACATGTGAAGGTGGCACAGGATCATGGG
*
22824020 ATTGAGTTTTGGGTAATTCTTTGGAGCAGCAAATACAAACT
131 ATTGAGTTTTGGGTAATTCTTTGGAGAAGCAAATACAAACT
*
22824061 TTTGCCATGGGAGATACGAACTTCTGACCTGAGGATGGAGGATCTAGAGAAGCAGGAGGAAA-GG
1 TTTGCCATGGGAGATACAAACTTCTGACCTGAGGATGGAGGATCTAGAGAAGCAGGA-GAAAGGG
* * * *
22824125 AGCTACTACAATTACGTTCCTGTAACTGATCCATCTCATCATGTGAAGGTGGGACAGGATCATGG
65 AGCTACTACAATTACGATCCCGTAACTGATCCATCTCAACATGTGAAGGTGGCACAGGATCATGG
22824190 GATTGAGTTTTGGGTAATTCTTTGGAGAAGCAAATA
130 GATTGAGTTTTGGGTAATTCTTTGGAGAAGCAAATA
22824226 TGTTCCCCCT
Statistics
Matches: 154, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
171 150 0.97
172 4 0.03
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (171 bp):
TTTGCCATGGGAGATACAAACTTCTGACCTGAGGATGGAGGATCTAGAGAAGCAGGAGAAAGGGA
GCTACTACAATTACGATCCCGTAACTGATCCATCTCAACATGTGAAGGTGGCACAGGATCATGGG
ATTGAGTTTTGGGTAATTCTTTGGAGAAGCAAATACAAACT
Found at i:22829244 original size:13 final size:13
Alignment explanation
Indices: 22829226--22829250 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22829216 AATAATAAAT
22829226 TTTTTTATTTTTA
1 TTTTTTATTTTTA
22829239 TTTTTTATTTTT
1 TTTTTTATTTTT
22829251 TAACTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:22829271 original size:11 final size:11
Alignment explanation
Indices: 22829255--22829292 Score: 58
Period size: 11 Copynumber: 3.3 Consensus size: 11
22829245 ATTTTTTAAC
22829255 TTTAAAATACT
1 TTTAAAATACT
22829266 TTTAAAATACTTT
1 TTTAAAATAC--T
22829279 TTTAAAATACT
1 TTTAAAATACT
22829290 TTT
1 TTT
22829293 TTTAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 14 0.56
13 11 0.44
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (11 bp):
TTTAAAATACT
Found at i:22829297 original size:14 final size:13
Alignment explanation
Indices: 22829255--22829294 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
22829245 ATTTTTTAAC
22829255 TTTAAAATAC--T
1 TTTAAAATACTTT
22829266 TTTAAAATACTTT
1 TTTAAAATACTTT
22829279 TTTAAAATACTTT
1 TTTAAAATACTTT
22829292 TTT
1 TTT
22829295 TAATTTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 10 0.37
13 17 0.63
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTAAAATACTTT
Found at i:22829848 original size:20 final size:20
Alignment explanation
Indices: 22829823--22829862 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22829813 CGTAAAATGA
*
22829823 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
22829843 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
22829863 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:22829852 original size:34 final size:34
Alignment explanation
Indices: 22829809--22829874 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 34
22829799 AGTAAAATGT
*
22829809 TTTTCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCGTAAAATGATTTACTGGAAAATATTTTAC
22829842 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTC-GTAAAATGATTTACTGGAAAATATTTT
22829875 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.40
35 13 0.43
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.47
Consensus pattern (34 bp):
TTTTCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:22829878 original size:14 final size:15
Alignment explanation
Indices: 22829802--22829878 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
22829792 CTTTGCCAGT
* *
22829802 AAAATGTTTTTC-GT
1 AAAATGATTTTCTGG
22829816 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
22829830 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
22829850 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
22829865 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
22829879 TGTTTGGATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
13 4 0.08
14 21 0.42
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:22829939 original size:32 final size:32
Alignment explanation
Indices: 22829855--22829940 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 32
22829845 TCTGTAAAAT
*
22829855 GATTTACTGGAAAATATTTTCTGGTGTTTGGATCA
1 GATTT-CT-GAAAATATTTTCTGCTGTTTGGA-CA
* *
22829890 -ATCTGTGTAAAATATTTTCTGCTGTTTGG-CA
1 GATTTCTG-AAAATATTTTCTGCTGTTTGGACA
22829921 GATTTCCTGAAAATATTTTC
1 GATTT-CTGAAAATATTTTC
22829941 CGGAAAAGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
31 2 0.05
32 15 0.35
33 23 0.53
34 3 0.07
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.44
Consensus pattern (32 bp):
GATTTCTGAAAATATTTTCTGCTGTTTGGACA
Found at i:22836270 original size:27 final size:27
Alignment explanation
Indices: 22836234--22836344 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 27
22836224 AGCATGTCCA
* * *
22836234 TTCAGAGTTCACTACAAGGGTTATTCT
1 TTCAAAGTTCACCACAAAGGTTATTCT
* *
22836261 TTTAAAGTTCACCATAAAGGTTATTCT
1 TTCAAAGTTCACCACAAAGGTTATTCT
*
22836288 TTCAAAATTCACCACAAAGGTTATTCT
1 TTCAAAGTTCACCACAAAGGTTATTCT
* * *
22836315 TTCAAAGATCACCACAAAAGCTATTCT
1 TTCAAAGTTCACCACAAAGGTTATTCT
22836342 TTC
1 TTC
22836345 CTGACATGTT
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (27 bp):
TTCAAAGTTCACCACAAAGGTTATTCT
Found at i:22850606 original size:3 final size:3
Alignment explanation
Indices: 22850598--22850650 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
22850588 TATGGCAGCA
22850598 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22850646 ATT AT
1 ATT AT
22850651 CTGTGAAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:22850858 original size:3 final size:3
Alignment explanation
Indices: 22850850--22850885 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
22850840 ATTTTGTTTT
22850850 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22850886 ATTTAAGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22861532 original size:2 final size:2
Alignment explanation
Indices: 22861525--22861550 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
22861515 NNNNNNNNNN
22861525 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
22861551 AAAATAGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22864574 original size:23 final size:22
Alignment explanation
Indices: 22864542--22864619 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 22
22864532 CCTTTGTGCA
*
22864542 TGTTACATTTAGCGCTATATGCG
1 TGTTATATTTAGCGCT-TATGCG
* *
22864565 TGTTATATTTAGCACCTTGTGCG
1 TGTTATATTTAGC-GCTTATGCG
* * * *
22864588 TGTTATATTCAGTGTTTTATGCA
1 TGTTATATTTAGCG-CTTATGCG
22864611 TGTTATATT
1 TGTTATATT
22864620 GGTGTGATTG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.47
Consensus pattern (22 bp):
TGTTATATTTAGCGCTTATGCG
Found at i:22864592 original size:46 final size:46
Alignment explanation
Indices: 22864518--22864619 Score: 109
Period size: 46 Copynumber: 2.2 Consensus size: 46
22864508 GTGCTTTACA
*
22864518 CGTGTTATA-TCAGCCCTTTGTGCATGTTACATTTAGCGCTATATG
1 CGTGTTATATTCAGCCCTTTGTGCATGTTACATTCAGCGCTATATG
* * * * * *
22864563 CGTGTTATATTTAGCACC-TTGTGCGTGTTATATTCAGTGTTTTATG
1 CGTGTTATATTCAGC-CCTTTGTGCATGTTACATTCAGCGCTATATG
*
22864609 CATGTTATATT
1 CGTGTTATATT
22864620 GGTGTGATTG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
45 9 0.19
46 36 0.77
47 2 0.04
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.45
Consensus pattern (46 bp):
CGTGTTATATTCAGCCCTTTGTGCATGTTACATTCAGCGCTATATG
Found at i:22876298 original size:13 final size:12
Alignment explanation
Indices: 22876280--22876337 Score: 50
Period size: 13 Copynumber: 4.9 Consensus size: 12
22876270 TATAAAAATA
22876280 TTATAACTTTTTT
1 TTATAA-TTTTTT
*
22876293 TTATAAATTTTGT
1 TTAT-AATTTTTT
22876306 TTATAA--TTTT
1 TTATAATTTTTT
*
22876316 TTATGA-TTTTT
1 TTATAATTTTTT
*
22876327 TAATAATTTTT
1 TTATAATTTTT
22876338 AAATTTTAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
10 8 0.22
11 8 0.22
12 6 0.16
13 13 0.35
14 2 0.05
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (12 bp):
TTATAATTTTTT
Found at i:22876318 original size:10 final size:10
Alignment explanation
Indices: 22876289--22876337 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 10
22876279 ATTATAACTT
22876289 TTTTTTATAAA
1 TTTTTTAT-AA
22876300 TTTTGTTTATAA
1 -TTT-TTTATAA
*
22876312 TTTTTTATGA
1 TTTTTTATAA
22876322 TTTTTTAATAA
1 TTTTTT-ATAA
22876333 TTTTT
1 TTTTT
22876338 AAATTTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
10 12 0.36
11 11 0.33
12 5 0.15
13 5 0.15
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:22876332 original size:21 final size:23
Alignment explanation
Indices: 22876289--22876337 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
22876279 ATTATAACTT
*
22876289 TTTTTTATAAATTTTGTTTATAA
1 TTTTTTATAAATTTTGTTAATAA
*
22876312 TTTTTTAT-GATTTT-TTAATAA
1 TTTTTTATAAATTTTGTTAATAA
22876333 TTTTT
1 TTTTT
22876338 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.46
22 5 0.21
23 8 0.33
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (23 bp):
TTTTTTATAAATTTTGTTAATAA
Found at i:22876767 original size:121 final size:120
Alignment explanation
Indices: 22876553--22876793 Score: 369
Period size: 121 Copynumber: 2.0 Consensus size: 120
22876543 ACGGAGCGAT
* * * *
22876553 TGTTTTGCTCACTCATCTAATGTACATGACTAATTTGCCCATTTTTTTAGTATAAGGGTGAAAAT
1 TGTTTTGCTCACTCATCAAATGTACAGGACTAATTTGCCCATTTTTTTAGTAGAAGGCTGAAAAT
*
22876618 GCAATCTGGGATATAGTAAAAAGAGTTTTGTGGTACTTTTACTGATCATTGGCTAC
66 GCAATCTGAGATATAGTAAAAAGAGTTTTGTGGTACTTTTAC-GATCATTGGCTAC
*
22876674 TGTTTTGCTCACTCATCAAATGTACAAGGACTAATTTGCTCA-TTTTTTAGTAGAATGGCT-AAA
1 TGTTTTGCTCACTCATCAAATGTAC-AGGACTAATTTGCCCATTTTTTTAGTAGAA-GGCTGAAA
* *
22876737 ATGCAATCTTAGATATAGTAAAAAGAGTTTTGTGGTACTTTTACGATCCTTGGCTAC
64 ATGCAATCTGAGATATAGTAAAAAGAGTTTTGTGGTACTTTTACGATCATTGGCTAC
22876794 ATCGGGTTAA
Statistics
Matches: 110, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
120 12 0.11
121 81 0.74
122 17 0.15
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (120 bp):
TGTTTTGCTCACTCATCAAATGTACAGGACTAATTTGCCCATTTTTTTAGTAGAAGGCTGAAAAT
GCAATCTGAGATATAGTAAAAAGAGTTTTGTGGTACTTTTACGATCATTGGCTAC
Found at i:22878334 original size:23 final size:23
Alignment explanation
Indices: 22878277--22878339 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
22878267 TTAGACTAAT
* *
22878277 TATTATTTAATTAATA-AATACA
1 TATTATTTAATAAATATAAAACA
*
22878299 TATT-TTTAA-AAATATAAAATA
1 TATTATTTAATAAATATAAAACA
22878320 TATTATTTAATAAAT-TAAAA
1 TATTATTTAATAAATATAAAA
22878340 AAAAACAGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 4 0.11
21 13 0.37
22 14 0.40
23 4 0.11
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
TATTATTTAATAAATATAAAACA
Found at i:22878340 original size:23 final size:22
Alignment explanation
Indices: 22878277--22878340 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 22
22878267 TTAGACTAAT
* *
22878277 TATTATTTAATTAATAAATACA
1 TATTATTTAATAAATAAAAACA
*
22878299 TATT-TTTAA-AAATATAAAATA
1 TATTATTTAATAAATA-AAAACA
22878320 TATTATTTAATAAATTAAAAA
1 TATTATTTAATAAA-TAAAAA
22878341 AAAACAGGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
20 4 0.11
21 13 0.37
22 9 0.26
23 7 0.20
24 2 0.06
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
TATTATTTAATAAATAAAAACA
Found at i:22883991 original size:5 final size:5
Alignment explanation
Indices: 22883981--22884012 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
22883971 TAAAAGGCCT
22883981 TTATA TTATA TTATA TTATA TTATA TTATA TT
1 TTATA TTATA TTATA TTATA TTATA TTATA TT
22884013 CATGCTCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:22887963 original size:13 final size:13
Alignment explanation
Indices: 22887945--22887969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22887935 CTGCTTATTT
22887945 TTTTTTTCTTTTC
1 TTTTTTTCTTTTC
22887958 TTTTTTTCTTTT
1 TTTTTTTCTTTT
22887970 TAATTTTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTCTTTTC
Found at i:22892013 original size:123 final size:123
Alignment explanation
Indices: 22891831--22892161 Score: 599
Period size: 123 Copynumber: 2.7 Consensus size: 123
22891821 AACAGTTGTG
* * * * *
22891831 TTGCTGTATCCATATCTGGTTCTATTTGTTTTCTATGATCATGTTGAAATTGGACTAGAGTGCAG
1 TTGCTGTCTCCATATTTGGTTGTATTCGTTTTCTATGATCATGTTGAAATTAGACTAGAGTGCAG
**
22891896 ATGTAACTAGTGGTTTTCATCGTGCATGTCCTAATATAATCCCTTTTGAACCAGCACA
66 ATGGGACTAGTGGTTTTCATCGTGCATGTCCTAATATAATCCCTTTTGAACCAGCACA
22891954 TTGCTGTCTCCATATTTGGTTGTATTCGTTTTCTATGATCATGTTGAAATTAGACTAGAGTGCAG
1 TTGCTGTCTCCATATTTGGTTGTATTCGTTTTCTATGATCATGTTGAAATTAGACTAGAGTGCAG
22892019 ATGGGACTAGTGGTTTTCATCGTGCATGTCCTAATATAATCCCTTTTGAACCAGCACA
66 ATGGGACTAGTGGTTTTCATCGTGCATGTCCTAATATAATCCCTTTTGAACCAGCACA
22892077 TTGCTGTCTCCATATTTGGTTGTATTCGTTTTCTATGATCATGTTGAAATTAGACTAGAGTGCAG
1 TTGCTGTCTCCATATTTGGTTGTATTCGTTTTCTATGATCATGTTGAAATTAGACTAGAGTGCAG
22892142 ATGGGACTAGTGGTTTTCAT
66 ATGGGACTAGTGGTTTTCAT
22892162 TGCTCCTGTG
Statistics
Matches: 201, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 201 1.00
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (123 bp):
TTGCTGTCTCCATATTTGGTTGTATTCGTTTTCTATGATCATGTTGAAATTAGACTAGAGTGCAG
ATGGGACTAGTGGTTTTCATCGTGCATGTCCTAATATAATCCCTTTTGAACCAGCACA
Found at i:22900452 original size:13 final size:13
Alignment explanation
Indices: 22900419--22900446 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22900409 TCACTCGGAC
22900419 TCTGATATAAGTG
1 TCTGATATAAGTG
22900432 TCTGATATAAGTG
1 TCTGATATAAGTG
22900445 TC
1 TC
22900447 GCATATGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (13 bp):
TCTGATATAAGTG
Found at i:22903086 original size:13 final size:11
Alignment explanation
Indices: 22903059--22903101 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
22903049 AGTTAAAAAT
22903059 TATTTTATTAA
1 TATTTTATTAA
22903070 TATTTTACTTAA
1 TATTTTA-TTAA
*
22903082 -ATATTTATTAT
1 TAT-TTTATTAA
22903093 TATTTTATT
1 TATTTTATT
22903102 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:22903359 original size:20 final size:22
Alignment explanation
Indices: 22903317--22903359 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
22903307 TTTAGAAGCA
* *
22903317 AGAAAATAGTAGATGAAAGTGG
1 AGAAAATAGTAGAAGAAAATGG
22903339 AGAAAAT-G-AGAAGAAAATGG
1 AGAAAATAGTAGAAGAAAATGG
22903359 A
1 A
22903360 AGGAAAGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 1 0.05
22 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.30, T:0.14
Consensus pattern (22 bp):
AGAAAATAGTAGAAGAAAATGG
Found at i:22911604 original size:69 final size:70
Alignment explanation
Indices: 22911528--22911667 Score: 210
Period size: 72 Copynumber: 2.0 Consensus size: 70
22911518 TCTCATTTAA
* * *
22911528 AATTAAATAAATAAGCCGATTGAG-TCTTAGCTCAATTGACATGGGCATTGTTGTCAATGTAGGA
1 AATTAAATAAATAAGCCGATTGAGTTCTTAGCTCAATCGACATGGGCATTGTTGCCAATGCAGGA
22911592 GGACG
66 GGACG
* *
22911597 AATTAAATAAGTAAGCCGATTGAGTCTTCTTAGCTCAATCGGCATGGGCATTGTTGCCAATGCAG
1 AATTAAATAAATAAGCCGATTGAG--TTCTTAGCTCAATCGACATGGGCATTGTTGCCAATGCAG
22911662 GAGGAC
64 GAGGAC
22911668 ATGAGTTCGT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
69 23 0.37
72 40 0.63
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (70 bp):
AATTAAATAAATAAGCCGATTGAGTTCTTAGCTCAATCGACATGGGCATTGTTGCCAATGCAGGA
GGACG
Found at i:22912528 original size:12 final size:12
Alignment explanation
Indices: 22912500--22912538 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
22912490 ACATCATATA
22912500 AAATTA-AAATT
1 AAATTAGAAATT
22912511 -AATTAGAAATT
1 AAATTAGAAATT
*
22912522 AAATTAGAAATA
1 AAATTAGAAATT
22912534 AAATT
1 AAATT
22912539 CAATTCAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 5 0.20
11 5 0.20
12 15 0.60
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (12 bp):
AAATTAGAAATT
Found at i:22912636 original size:177 final size:178
Alignment explanation
Indices: 22912413--22912767 Score: 703
Period size: 177 Copynumber: 2.0 Consensus size: 178
22912403 AAATAATTTT
22912413 TCAAGAAAAAAAATGAATAACTTTTATATAATATTTTTAAAAAATTTTCATTATTTTAAATACAA
1 TCAAGAAAAAAAATGAATAACTTTTATATAATATTTTTAAAAAATTTTCATTATTTTAAATACAA
22912478 AATATTTATTTTACATCATATAAAATTAAAATTAATTAGAAATTAAATTAGAAATAAAATTCAAT
66 AATATTTATTTTACATCATATAAAATTAAAATTAATTAGAAATTAAATTAGAAATAAAATTCAAT
22912543 TCAATTAAGATAATCACAAAATTTAAATTATATAAATACTCAATTTAA
131 TCAATTAAGATAATCACAAAATTTAAATTATATAAATACTCAATTTAA
22912591 TCAAG-AAAAAAATGAATAACTTTTATATAATATTTTTAAAAAATTTTCATTATTTTAAATACAA
1 TCAAGAAAAAAAATGAATAACTTTTATATAATATTTTTAAAAAATTTTCATTATTTTAAATACAA
22912655 AATATTTATTTTACATCATATAAAATTAAAATTAATTAGAAATTAAATTAGAAATAAAATTCAAT
66 AATATTTATTTTACATCATATAAAATTAAAATTAATTAGAAATTAAATTAGAAATAAAATTCAAT
22912720 TCAATTAAGATAATCACAAAATTTAAATTATATAAATACTCAATTTAA
131 TCAATTAAGATAATCACAAAATTTAAATTATATAAATACTCAATTTAA
22912768 ATTAATTTTC
Statistics
Matches: 177, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
177 172 0.97
178 5 0.03
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (178 bp):
TCAAGAAAAAAAATGAATAACTTTTATATAATATTTTTAAAAAATTTTCATTATTTTAAATACAA
AATATTTATTTTACATCATATAAAATTAAAATTAATTAGAAATTAAATTAGAAATAAAATTCAAT
TCAATTAAGATAATCACAAAATTTAAATTATATAAATACTCAATTTAA
Found at i:22912705 original size:12 final size:12
Alignment explanation
Indices: 22912677--22912715 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
22912667 ACATCATATA
22912677 AAATTA-AAATT
1 AAATTAGAAATT
22912688 -AATTAGAAATT
1 AAATTAGAAATT
*
22912699 AAATTAGAAATA
1 AAATTAGAAATT
22912711 AAATT
1 AAATT
22912716 CAATTCAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 5 0.20
11 5 0.20
12 15 0.60
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (12 bp):
AAATTAGAAATT
Found at i:22913623 original size:2 final size:2
Alignment explanation
Indices: 22913616--22913644 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22913606 ATGCAAATGC
22913616 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22913645 TGAAACAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22919653 original size:14 final size:14
Alignment explanation
Indices: 22919634--22919676 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
22919624 TATTGTATTA
22919634 TATTTAAAAAAATAT
1 TATTTAAAAAAA-AT
22919649 T-TTTAAATAAAAAT
1 TATTTAAA-AAAAAT
22919663 TAATTTAAAAAAAA
1 T-ATTTAAAAAAAA
22919677 ATTAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 9 0.36
15 10 0.40
16 6 0.24
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TATTTAAAAAAAAT
Found at i:22919669 original size:16 final size:15
Alignment explanation
Indices: 22919630--22919681 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 15
22919620 TATTTATTGT
22919630 ATTATATTTAAAAAAA
1 ATTA-ATTTAAAAAAA
22919646 TATT--TTTAAATAAAA
1 -ATTAATTTAAA-AAAA
22919661 ATTAATTTAAAAAAAA
1 ATTAATTT-AAAAAAA
22919677 ATTAA
1 ATTAA
22919682 ATATAGGCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
14 9 0.29
15 4 0.13
16 12 0.39
17 6 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTAATTTAAAAAAA
Found at i:22936769 original size:6 final size:6
Alignment explanation
Indices: 22936758--22936802 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
22936748 AGGTTTCCAA
* * * *
22936758 AAATGG AAATGG AAATGG AAAAGG AGATGA AAATGA AAATGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAA
22936803 CTTGCAATCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.58, C:0.00, G:0.29, T:0.13
Consensus pattern (6 bp):
AAATGG
Found at i:22937435 original size:6 final size:6
Alignment explanation
Indices: 22937424--22937468 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
22937414 AGGTTTCCAA
* * * *
22937424 AAATGG AAATGG AAATGG AAAAGG AGATGA AAATGA AAATGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAA
22937469 CTTGCAATCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.58, C:0.00, G:0.29, T:0.13
Consensus pattern (6 bp):
AAATGG
Found at i:22940276 original size:104 final size:104
Alignment explanation
Indices: 22940163--22940361 Score: 319
Period size: 104 Copynumber: 1.9 Consensus size: 104
22940153 AATTTAGCCA
* * * *
22940163 CTGAGCTTTAATTAACGATTTTCTCGGTTAAATTACTTAA-CTGATCTTTAATATATTATTACAC
1 CTGAGCTTTAATTAACAATTTTCCCGGTTAAATTACTTAATC-AATCTTTAAGATATTATTACAC
* *
22940227 TAACTCTATTCATCTTCCTATTTTATTCTTATGAGAGTCC
65 TAACGCTATTAATCTTCCTATTTTATTCTTATGAGAGTCC
*
22940267 CTGAGCTTTAATTAACAATTTTCCCGGTTAAATTACTTAATCAATCTTTAAGATATTTTTACACT
1 CTGAGCTTTAATTAACAATTTTCCCGGTTAAATTACTTAATCAATCTTTAAGATATTATTACACT
22940332 AACGCTATTAATCTTCCTATTTTATTCTTA
66 AACGCTATTAATCTTCCTATTTTATTCTTA
22940362 GGAGCTCGAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
104 86 0.99
105 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (104 bp):
CTGAGCTTTAATTAACAATTTTCCCGGTTAAATTACTTAATCAATCTTTAAGATATTATTACACT
AACGCTATTAATCTTCCTATTTTATTCTTATGAGAGTCC
Found at i:22942956 original size:21 final size:20
Alignment explanation
Indices: 22942932--22942992 Score: 56
Period size: 21 Copynumber: 3.1 Consensus size: 20
22942922 ATTATTTATT
22942932 ATATTATTAAATGATAAATTA
1 ATATTATT-AATGATAAATTA
* * *
22942953 ATATGATTCGATGGTAAATT-
1 ATATTATT-AATGATAAATTA
22942973 AT-TT-TTAATGATAAATTA
1 ATATTATTAATGATAAATTA
22942991 AT
1 AT
22942993 TAAAGTGATT
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
17 9 0.28
18 4 0.12
19 1 0.03
20 2 0.06
21 16 0.50
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (20 bp):
ATATTATTAATGATAAATTA
Found at i:22944443 original size:22 final size:22
Alignment explanation
Indices: 22944413--22944454 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
22944403 ATTTTTTATT
*
22944413 AAATTATTA-AATTTATATTTGA
1 AAATAATTATAATTTA-ATTTGA
22944435 AAATAATTATAATTTAATTT
1 AAATAATTATAATTTAATTT
22944455 ATAATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
AAATAATTATAATTTAATTTGA
Found at i:22953087 original size:14 final size:15
Alignment explanation
Indices: 22953066--22953102 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
22953056 TTAGTCCCTG
*
22953066 GGGTTTTTTGATTTA
1 GGGTTTTTAGATTTA
*
22953081 GGGTTTTTAGGTTTA
1 GGGTTTTTAGATTTA
22953096 GGGTTTT
1 GGGTTTT
22953103 GTTAAACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.32, T:0.57
Consensus pattern (15 bp):
GGGTTTTTAGATTTA
Found at i:22953592 original size:126 final size:126
Alignment explanation
Indices: 22953363--22953883 Score: 848
Period size: 126 Copynumber: 4.1 Consensus size: 126
22953353 AATAAGGATT
*
22953363 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATAGTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
*
22953428 ATGCTTCAAG-ACGGATGCACTGTCAGCAAAATTAATGAAAAAAGCTCCCACGTGGACGCTC
66 ATGCTTCAAGCA-GGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACGCTC
* * *
22953489 TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTTTAAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
* * *
22953554 ATAG-TTCAAGCAGGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCTACATGGATGCTC
66 AT-GCTTCAAGCAGGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACGCTC
* *
22953615 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAATACGGTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
*** * *
22953680 ACAATTCAAGCAGGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCTCACGTGGACGTTC
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACGCTC
*
22953741 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
* *
22953806 ATGCTTCAAGCAGGATGCACTTTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACGCTA
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACGCTC
22953867 TTTTTCTACAGTAGTTC
1 TTTTTCTACAGTAGTTC
22953884 ATGTTTGGCC
Statistics
Matches: 362, Mismatches: 30, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
126 360 0.99
127 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACGCTC
Found at i:22956893 original size:20 final size:21
Alignment explanation
Indices: 22956864--22956912 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
22956854 TTCTATTGCC
*
22956864 TTATTCAAAA-AAATTCTATT
1 TTATTAAAAATAAATTCTATT
*
22956884 TTATTAAAAATAAATTTTATT
1 TTATTAAAAATAAATTCTATT
22956905 TTATTAAA
1 TTATTAAA
22956913 TGAAATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
TTATTAAAAATAAATTCTATT
Found at i:22957334 original size:18 final size:18
Alignment explanation
Indices: 22957300--22957334 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22957290 AAAAGGAAAC
* *
22957300 ATATAAGGGTTATGATAT
1 ATATAAGGGCTAGGATAT
22957318 ATATAAGGGCTAGGATA
1 ATATAAGGGCTAGGATA
22957335 CGCACCGGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.26, T:0.31
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAT
Found at i:22958846 original size:24 final size:23
Alignment explanation
Indices: 22958809--22958858 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
22958799 ACTGTTATAA
* *
22958809 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAAAT-ATT
*
22958833 AAAATTACATAATAAAAAATATT
1 AAAATTACAAAATAAAAAATATT
22958856 AAA
1 AAA
22958859 TAATATTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
AAAATTACAAAATAAAAAATATT
Found at i:22959070 original size:30 final size:30
Alignment explanation
Indices: 22959029--22959092 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
22959019 ATTAATTAAA
*
22959029 GAGAGCTTTGAGAAATTTAAGGAGAAAGTT
1 GAGAACTTTGAGAAATTTAAGGAGAAAGTT
* *
22959059 GAGAACTTTGAGAAATTTAGGGAGAAATTT
1 GAGAACTTTGAGAAATTTAAGGAGAAAGTT
22959089 GAGA
1 GAGA
22959093 GTTTTTTGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.41, C:0.03, G:0.30, T:0.27
Consensus pattern (30 bp):
GAGAACTTTGAGAAATTTAAGGAGAAAGTT
Found at i:22969580 original size:21 final size:21
Alignment explanation
Indices: 22969537--22969580 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
22969527 GTTAGACCTC
*
22969537 GTCCTGTGATTTTTGTTTTCT
1 GTCCTGTGATTTTTGTTTCCT
*
22969558 GTCCTGTTGGTTTTTG-TTCCT
1 GTCCTG-TGATTTTTGTTTCCT
22969579 GT
1 GT
22969581 TGCTACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.02, C:0.16, G:0.23, T:0.59
Consensus pattern (21 bp):
GTCCTGTGATTTTTGTTTCCT
Found at i:22981888 original size:20 final size:19
Alignment explanation
Indices: 22981863--22981921 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 19
22981853 AAAATATATA
22981863 AAAATATTTTTATATGTTTT
1 AAAATATTTTTATAT-TTTT
22981883 AAAATAATTTTTA-ATTTTT
1 AAAAT-ATTTTTATATTTTT
*
22981902 AAAATAATTTTATAATTTTT
1 AAAATATTTTTAT-ATTTTT
22981922 TTAATTTTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
18 6 0.17
19 9 0.26
20 13 0.37
21 7 0.20
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AAAATATTTTTATATTTTT
Found at i:22981903 original size:19 final size:19
Alignment explanation
Indices: 22981863--22981921 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 19
22981853 AAAATATATA
22981863 AAAAT-ATTTTTATATGTTTT
1 AAAATAATTTTTA-AT-TTTT
22981883 AAAATAATTTTTAATTTTT
1 AAAATAATTTTTAATTTTT
22981902 AAAATAATTTTATAATTTTT
1 AAAATAATTTT-TAATTTTT
22981922 TTAATTTTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 15 0.41
20 15 0.41
21 7 0.19
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AAAATAATTTTTAATTTTT
Found at i:22986568 original size:210 final size:210
Alignment explanation
Indices: 22986206--22986630 Score: 832
Period size: 210 Copynumber: 2.0 Consensus size: 210
22986196 TTGTTCTTGA
22986206 AATTAGTTGTACTGGTTTCAACGCATTCGAACTCACATCCTTCTGCATTAGCAACATTGCTCATA
1 AATTAGTTGTACTGGTTTCAACGCATTCGAACTCACATCCTTCTGCATTAGCAACATTGCTCATA
*
22986271 CCAATCGAGTTAAGGTGCAGATACTCTCTTAATAAATAAATAAATAATTATGAAATGTGTTTTAT
66 CAAATCGAGTTAAGGTGCAGATACTCTCTTAATAAATAAATAAATAATTATGAAATGTGTTTTAT
22986336 TCTTTTAAACAGAGACTAAATATTTAAGATCATGATTAAAAGAAATCAACCACCAAACTACATTT
131 TCTTTTAAACAGAGACTAAATATTTAAGATCATGATTAAAAGAAATCAACCACCAAACTACATTT
22986401 CATAATTTTCTTTTC
196 CATAATTTTCTTTTC
22986416 AATTAGTTGTACTGGTTTCAACGCATTCGAACTCACATCCTTCTGCATTAGCAACATTGCTCATA
1 AATTAGTTGTACTGGTTTCAACGCATTCGAACTCACATCCTTCTGCATTAGCAACATTGCTCATA
22986481 CAAATCGAGTTAAGGTGCAGATACTCTCTTAATAAATAAATAAATAATTATGAAATGTGTTTTAT
66 CAAATCGAGTTAAGGTGCAGATACTCTCTTAATAAATAAATAAATAATTATGAAATGTGTTTTAT
*
22986546 TCTTTTAAACAGAGACTAAATATTTAATATCATGATTAAAAGAAATCAACCACCAAACTACATTT
131 TCTTTTAAACAGAGACTAAATATTTAAGATCATGATTAAAAGAAATCAACCACCAAACTACATTT
22986611 CATAATTTTCTTTTC
196 CATAATTTTCTTTTC
22986626 AATTA
1 AATTA
22986631 CTCCAAATGT
Statistics
Matches: 213, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
210 213 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (210 bp):
AATTAGTTGTACTGGTTTCAACGCATTCGAACTCACATCCTTCTGCATTAGCAACATTGCTCATA
CAAATCGAGTTAAGGTGCAGATACTCTCTTAATAAATAAATAAATAATTATGAAATGTGTTTTAT
TCTTTTAAACAGAGACTAAATATTTAAGATCATGATTAAAAGAAATCAACCACCAAACTACATTT
CATAATTTTCTTTTC
Found at i:22988018 original size:11 final size:11
Alignment explanation
Indices: 22988002--22988026 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22987992 GAACGGTAGA
22988002 TTATTATTATT
1 TTATTATTATT
22988013 TTATTATTATT
1 TTATTATTATT
22988024 TTA
1 TTA
22988027 ACTTCCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTATT
Found at i:22993096 original size:21 final size:20
Alignment explanation
Indices: 22993057--22993096 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
22993047 CGGACATCCA
22993057 AGGTACTTAAATCTTTTTTT
1 AGGTACTTAAATCTTTTTTT
22993077 AGGTACTTAAATCTTTTTTT
1 AGGTACTTAAATCTTTTTTT
22993097 CTTTTCTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (20 bp):
AGGTACTTAAATCTTTTTTT
Found at i:23000607 original size:16 final size:16
Alignment explanation
Indices: 23000570--23000609 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
23000560 TTGATAAAAT
* *
23000570 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
23000586 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
23000602 TAAAATTA
1 TAAAATTA
23000610 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:23002884 original size:3 final size:3
Alignment explanation
Indices: 23002876--23002903 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
23002866 TATGATCGAA
23002876 TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG T
23002904 GTTTTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:23007585 original size:35 final size:35
Alignment explanation
Indices: 23007539--23007608 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
23007529 TGAGTGCACT
*
23007539 GAGTGTGAAAATAAGTGAATTACTTGGTTTTTAGC
1 GAGTGTGAAAATAAGTGAATTACTTGGTTTCTAGC
23007574 GAGTGTGAAAATAAGTGAATTACTTGGTTTCTAGC
1 GAGTGTGAAAATAAGTGAATTACTTGGTTTCTAGC
23007609 CTAAGTTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (35 bp):
GAGTGTGAAAATAAGTGAATTACTTGGTTTCTAGC
Found at i:23014758 original size:16 final size:18
Alignment explanation
Indices: 23014731--23014763 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23014721 TTAAAATTGG
23014731 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
23014748 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
23014764 GTTAACTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:23014777 original size:17 final size:17
Alignment explanation
Indices: 23014757--23014793 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
23014747 ATTGAGAAAT
*
23014757 TAATTTAGTTAACTTAA
1 TAATTTAATTAACTTAA
*
23014774 TAATTTAATTAATTTAA
1 TAATTTAATTAACTTAA
23014791 TAA
1 TAA
23014794 ATAATATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (17 bp):
TAATTTAATTAACTTAA
Found at i:23014786 original size:9 final size:9
Alignment explanation
Indices: 23014754--23014791 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
23014744 TTAATTGAGA
23014754 AATTAATTT
1 AATTAATTT
* *
23014763 AGTTAACTT
1 AATTAATTT
23014772 AA-TAATTT
1 AATTAATTT
23014780 AATTAATTT
1 AATTAATTT
23014789 AAT
1 AAT
23014792 AAATAATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (9 bp):
AATTAATTT
Found at i:23021983 original size:40 final size:40
Alignment explanation
Indices: 23021933--23022019 Score: 102
Period size: 40 Copynumber: 2.2 Consensus size: 40
23021923 AATTATAGAA
* * * * *
23021933 TACTAAATATTGTTTTGAGTACTAAATTGAATTGTGAAGT
1 TACTGAATATTGTTATGAGTACTAAATTGAACTATGAAAT
* **
23021973 TACTGAATATTGTTATGTGTACTGCATTGAACTATGAAAT
1 TACTGAATATTGTTATGAGTACTAAATTGAACTATGAAAT
23022013 TACTGAA
1 TACTGAA
23022020 GTAATGAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.40
Consensus pattern (40 bp):
TACTGAATATTGTTATGAGTACTAAATTGAACTATGAAAT
Found at i:23023023 original size:42 final size:42
Alignment explanation
Indices: 23022972--23023069 Score: 153
Period size: 42 Copynumber: 2.3 Consensus size: 42
23022962 ACGGCCAAAC
* *
23022972 CACACGCCAGTGTGCATGGCCGTGTGTTACACACGG-CTGAGA
1 CACATGCCAGTGTGCATGGCCATGTGTTACACA-GGACTGAGA
23023014 CACATGCCAGTGTGCATGGCCATGTGTTACACAGGACTGAGA
1 CACATGCCAGTGTGCATGGCCATGTGTTACACAGGACTGAGA
*
23023056 CACATGCCCGTGTG
1 CACATGCCAGTGTG
23023070 GACAAAATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 2 0.04
42 50 0.96
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (42 bp):
CACATGCCAGTGTGCATGGCCATGTGTTACACAGGACTGAGA
Found at i:23026247 original size:13 final size:13
Alignment explanation
Indices: 23026201--23026253 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
23026191 ATCTATTTAG
23026201 TTTAAAAATAAAT
1 TTTAAAAATAAAT
23026214 TTAGTAAAAGTATAAAT
1 TT--TAAAA--ATAAAT
*
23026231 TTTAAAAATATAT
1 TTTAAAAATAAAT
*
23026244 TTTAAGAATA
1 TTTAAAAATA
23026254 TAAGTTAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
13 16 0.47
15 10 0.29
17 8 0.24
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.40
Consensus pattern (13 bp):
TTTAAAAATAAAT
Found at i:23028610 original size:22 final size:21
Alignment explanation
Indices: 23028569--23028616 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
23028559 TTATAACAAA
*
23028569 AATA-TTTTTATGAAATATAT
1 AATATTTTTTATGAAAAATAT
*
23028589 AATATTTTTTATTATAAAATAT
1 AATATTTTTTATGA-AAAATAT
*
23028611 ATTATT
1 AATATT
23028617 GTTAATTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 4 0.17
21 8 0.35
22 11 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
AATATTTTTTATGAAAAATAT
Found at i:23031040 original size:25 final size:25
Alignment explanation
Indices: 23031007--23031069 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
23030997 TAGCTCTCAT
*
23031007 GAGCATCCCGATATATGGCCCTCT-C
1 GAGCTTCCCGATATATGGCCCT-TGC
* **
23031032 GAGCTTCCCGTTATATGGTTCTTGC
1 GAGCTTCCCGATATATGGCCCTTGC
23031057 GAGCTTCCCGATA
1 GAGCTTCCCGATA
23031070 ATAGCTCTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 1 0.03
25 31 0.97
ACGTcount: A:0.17, C:0.30, G:0.22, T:0.30
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCCCTTGC
Found at i:23041832 original size:18 final size:20
Alignment explanation
Indices: 23041809--23041856 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
23041799 CGATTACACG
*
23041809 GATGATGAA-GGA-GATGAT
1 GATGATGAAGGGAGGAGGAT
23041827 GATGATGAAGGGAGGGAGGAT
1 GATGATGAAGGGA-GGAGGAT
23041848 GATGATGAA
1 GATGATGAA
23041857 AATGGGGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 9 0.35
19 3 0.12
21 14 0.54
ACGTcount: A:0.38, C:0.00, G:0.44, T:0.19
Consensus pattern (20 bp):
GATGATGAAGGGAGGAGGAT
Found at i:23048433 original size:19 final size:19
Alignment explanation
Indices: 23048409--23048446 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
23048399 ACTTAAAAAA
23048409 TCTTTGCCATGGAATGCTT
1 TCTTTGCCATGGAATGCTT
23048428 TCTTTGCCATGGAATGCTT
1 TCTTTGCCATGGAATGCTT
23048447 CTGCATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (19 bp):
TCTTTGCCATGGAATGCTT
Found at i:23051619 original size:12 final size:12
Alignment explanation
Indices: 23051604--23051628 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23051594 GTTCTTTTCG
23051604 TTGTTTTTTTTT
1 TTGTTTTTTTTT
23051616 TTGTTTTTTTTT
1 TTGTTTTTTTTT
23051628 T
1 T
23051629 GGGGGGGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TTGTTTTTTTTT
Found at i:23055536 original size:47 final size:47
Alignment explanation
Indices: 23055485--23055638 Score: 114
Period size: 47 Copynumber: 3.1 Consensus size: 47
23055475 TTAATGGTTT
23055485 TTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTAC
1 TTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTAC
* * * * ** ** ** *
23055532 TTTTTCCTTGTGTTTTATCTAACAAGTTCTAATGAATTA--TAAAAAATTATAGTT
1 TTTTT-CTT-T-TGTAAAC-AACAA-TT-T-GTGTTTTATCTAATGAATGGTA--C
23055586 TTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTAC
1 TTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTAC
23055633 TTTTTC
1 TTTTTC
23055639 CTTGTGTTTT
Statistics
Matches: 74, Mismatches: 22, Indels: 22
0.63 0.19 0.19
Matches are distributed among these distances:
47 16 0.22
48 4 0.05
49 11 0.15
50 9 0.12
51 9 0.12
52 11 0.15
53 4 0.05
54 10 0.14
ACGTcount: A:0.29, C:0.10, G:0.11, T:0.50
Consensus pattern (47 bp):
TTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTAC
Found at i:23055591 original size:101 final size:101
Alignment explanation
Indices: 23055483--23055690 Score: 416
Period size: 101 Copynumber: 2.1 Consensus size: 101
23055473 CTTTAATGGT
23055483 TTTTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTACTTTTTCCTTGTGTTTT
1 TTTTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTACTTTTTCCTTGTGTTTT
23055548 ATCTAACAAGTTCTAATGAATTATAAAAAATTATAG
66 ATCTAACAAGTTCTAATGAATTATAAAAAATTATAG
23055584 TTTTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTACTTTTTCCTTGTGTTTT
1 TTTTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTACTTTTTCCTTGTGTTTT
23055649 ATCTAACAAGTTCTAATGAATTATAAAAAATTATAG
66 ATCTAACAAGTTCTAATGAATTATAAAAAATTATAG
23055685 TTTTTT
1 TTTTTT
23055691 AATATATATA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 107 1.00
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.50
Consensus pattern (101 bp):
TTTTTTTCTTTTGTAAACAACAATTTGTGTTTTATCTAATGAATGGTACTTTTTCCTTGTGTTTT
ATCTAACAAGTTCTAATGAATTATAAAAAATTATAG
Found at i:23058028 original size:12 final size:12
Alignment explanation
Indices: 23058013--23058038 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23058003 CACTAAGAGC
23058013 ATATGCTACTAA
1 ATATGCTACTAA
23058025 ATATGCTACTAA
1 ATATGCTACTAA
23058037 AT
1 AT
23058039 TTTCGTGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATATGCTACTAA
Found at i:23062127 original size:6 final size:6
Alignment explanation
Indices: 23062116--23062144 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
23062106 CCAAAGAAGA
23062116 AAATAT AAATAT AAATAT AAATAT AAATA
1 AAATAT AAATAT AAATAT AAATAT AAATA
23062145 AAAACATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATAT
Found at i:23066759 original size:13 final size:14
Alignment explanation
Indices: 23066733--23066773 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
23066723 TGATTTAGTG
23066733 AAAA-AATATTTAA
1 AAAATAATATTTAA
*
23066746 AGAATAAT-TTTAA
1 AAAATAATATTTAA
23066759 AAAATAATATTTAA
1 AAAATAATATTTAA
23066773 A
1 A
23066774 CACCATACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (14 bp):
AAAATAATATTTAA
Found at i:23072710 original size:152 final size:152
Alignment explanation
Indices: 23072434--23072721 Score: 445
Period size: 152 Copynumber: 1.9 Consensus size: 152
23072424 TTAAAAGGTT
* * *
23072434 AAAAGTTAATTTTAATCCAACATTGACAGGAGAATACTCTCGTATCTCACATTTACGTTATAAAT
1 AAAAGTTAATTTTAATCCAACATTGACAGGAGAATACTCCCATATCTCACATTTACCTTATAAAT
* * * *
23072499 AAGTGACAACTTCTTTACTGTTTTCATTAAAAAGTTAATTTTTATCTCATATTGACTAGATAATA
66 AAGTGACAACTTCTTCACTGTTTTCATTAAAAAGTTAATTTTTATCCCACATTAACTAGATAATA
23072564 CTTTTATAGCTCGCTTTCATAA
131 CTTTTATAGCTCGCTTTCATAA
* * *
23072586 AAAAGTTAATTTTAATTCC-ATATTGACCGGAGAATACTCCCATATCTCATATTTACCTTATAAA
1 AAAAGTTAATTTTAA-TCCAACATTGACAGGAGAATACTCCCATATCTCACATTTACCTTATAAA
*
23072650 TAAGTGACAATTTCTTCACTGTTTTCATTAAAAAGTT-ATTTTTACTCCCACATTAACTAGATAA
65 TAAGTGACAACTTCTTCACTGTTTTCATTAAAAAGTTAATTTTTA-TCCCACATTAACTAGATAA
23072714 TACTTTTA
129 TACTTTTA
23072722 CTATTTTCAT
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
151 7 0.06
152 113 0.92
153 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.40
Consensus pattern (152 bp):
AAAAGTTAATTTTAATCCAACATTGACAGGAGAATACTCCCATATCTCACATTTACCTTATAAAT
AAGTGACAACTTCTTCACTGTTTTCATTAAAAAGTTAATTTTTATCCCACATTAACTAGATAATA
CTTTTATAGCTCGCTTTCATAA
Found at i:23072825 original size:22 final size:23
Alignment explanation
Indices: 23072797--23072844 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
23072787 TTCACTATTT
*
23072797 CCTTAAAAAA-TTAATTTTAACC
1 CCTTAAAAAAGTAAATTTTAACC
*
23072819 CCTTAAAAAAGTAAATTTTAATC
1 CCTTAAAAAAGTAAATTTTAACC
23072842 CCT
1 CCT
23072845 CATTGGCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (23 bp):
CCTTAAAAAAGTAAATTTTAACC
Found at i:23073129 original size:21 final size:22
Alignment explanation
Indices: 23073105--23073145 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
23073095 ACTATTTTCA
23073105 TTAAAAA-TTAATTTTAATCTC
1 TTAAAAAGTTAATTTTAATCTC
23073126 TTAAAAAGTTAATTTTAATC
1 TTAAAAAGTTAATTTTAATC
23073146 CTACATTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (22 bp):
TTAAAAAGTTAATTTTAATCTC
Found at i:23073349 original size:10 final size:10
Alignment explanation
Indices: 23073331--23073362 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
23073321 ATGCCAAAAG
*
23073331 AAGACCAACA
1 AAGAACAACA
23073341 AAGAACAACA
1 AAGAACAACA
23073351 AAGAACAACA
1 AAGAACAACA
23073361 AA
1 AA
23073363 AAGAGTGCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.69, C:0.22, G:0.09, T:0.00
Consensus pattern (10 bp):
AAGAACAACA
Found at i:23076350 original size:40 final size:40
Alignment explanation
Indices: 23076292--23076384 Score: 150
Period size: 40 Copynumber: 2.3 Consensus size: 40
23076282 ATTTTAGGGA
*
23076292 TTTACAAGATATGCCATATCAAATATAATCTAATCTAATC
1 TTTACAAAATATGCCATATCAAATATAATCTAATCTAATC
* * *
23076332 TTTACAAAATATGTCATATCAAATCTAATCTAATGTAATC
1 TTTACAAAATATGCCATATCAAATATAATCTAATCTAATC
23076372 TTTACAAAATATG
1 TTTACAAAATATG
23076385 ATTCCCTCAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.37
Consensus pattern (40 bp):
TTTACAAAATATGCCATATCAAATATAATCTAATCTAATC
Found at i:23077049 original size:93 final size:93
Alignment explanation
Indices: 23076886--23077123 Score: 277
Period size: 93 Copynumber: 2.5 Consensus size: 93
23076876 TAAATTTTGA
**
23076886 TTCC-TTAAAAAGTTAATTTTAATCCCACATTTGCTAGAGAACACTCTCATGTTCACACTTACCC
1 TTCCATTAAAAAGTTAATTTTAATCCCACATTAACTAGAGAACACTCTCATGTTCACACTTACCC
* * *
23076950 TATAAATAAGTGTTC-ATTTCTTCACTCT
66 TATAAATAAGTG-ACAATTTATTCACTAT
* * * * * *
23076978 TTTCATTAAAAAGTTAATTTTAATCTCACATTAACTATA-AACACTC-CTATATTTCACATTTTC
1 TTCCATTAAAAAGTTAATTTTAATCCCACATTAACTAGAGAACACTCTC-AT-GTTCACACTTAC
*
23077041 CTTATAAATAAGTGACAATTTATTCACTAT
64 CCTATAAATAAGTGACAATTTATTCACTAT
* *
23077071 TTCCATTAAAAAGTTAAATTTTTAATCCCACATTGACTAGAGAATACTCTCAT
1 TTCCATTAAAAAGTT-AA-TTTTAATCCCACATTAACTAGAGAACACTCTCAT
23077124 AGCTCACTTC
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
91 1 0.01
92 13 0.11
93 77 0.64
94 2 0.02
95 19 0.16
96 8 0.07
97 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (93 bp):
TTCCATTAAAAAGTTAATTTTAATCCCACATTAACTAGAGAACACTCTCATGTTCACACTTACCC
TATAAATAAGTGACAATTTATTCACTAT
Found at i:23077192 original size:43 final size:44
Alignment explanation
Indices: 23077131--23077214 Score: 152
Period size: 43 Copynumber: 1.9 Consensus size: 44
23077121 CATAGCTCAC
*
23077131 TTCTTCACTATTTTTATTAAAAAAA-TTAATTTTAATCCCACAA
1 TTCTTCACTATTTTTATTAAAAAAAGTTAATTTCAATCCCACAA
23077174 TTCTTCACTATTTTTATTAAAAAAAGTTAATTTCAATCCCA
1 TTCTTCACTATTTTTATTAAAAAAAGTTAATTTCAATCCCA
23077215 TATTGACTAG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 25 0.64
44 14 0.36
ACGTcount: A:0.38, C:0.17, G:0.01, T:0.44
Consensus pattern (44 bp):
TTCTTCACTATTTTTATTAAAAAAAGTTAATTTCAATCCCACAA
Found at i:23079356 original size:17 final size:18
Alignment explanation
Indices: 23079328--23079361 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
23079318 NNNNNNNNAA
23079328 TAAAAATAATATATTAAT
1 TAAAAATAATATATTAAT
23079346 TAAAAAT-ATATATTAA
1 TAAAAATAATATATTAA
23079362 AAAAATTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAAATAATATATTAAT
Found at i:23087923 original size:26 final size:27
Alignment explanation
Indices: 23087880--23087930 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
23087870 TAATTAATAT
23087880 ACATTTAAATAATTATAATCAAAATCC
1 ACATTTAAATAATTATAATCAAAATCC
*
23087907 ACATTATAAA-AA-TATAATTAAAAT
1 ACATT-TAAATAATTATAATCAAAAT
23087931 TTATTCCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 11 0.50
27 7 0.32
28 4 0.18
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (27 bp):
ACATTTAAATAATTATAATCAAAATCC
Found at i:23088835 original size:20 final size:21
Alignment explanation
Indices: 23088810--23088851 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
23088800 TTAAAATTAA
*
23088810 ATAAAACTAG-TTTTTTTCTT
1 ATAAAAATAGATTTTTTTCTT
23088830 ATAAAAATAGACTTTTTTTCTT
1 ATAAAAATAGA-TTTTTTTCTT
23088852 CTTTTATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
22 10 0.53
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (21 bp):
ATAAAAATAGATTTTTTTCTT
Found at i:23090921 original size:3 final size:3
Alignment explanation
Indices: 23090913--23091466 Score: 1108
Period size: 3 Copynumber: 184.7 Consensus size: 3
23090903 TTCTTAAAAC
23090913 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23090961 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091009 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091057 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091105 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091153 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091201 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091249 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091297 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091345 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091393 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23091441 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
23091467 GCTCTAAAAT
Statistics
Matches: 551, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 551 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:23091864 original size:3 final size:3
Alignment explanation
Indices: 23091858--23091897 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
23091848 TTCAAAATAA
23091858 TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
23091898 GCTCTAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:23092241 original size:431 final size:432
Alignment explanation
Indices: 23091426--23092289 Score: 1721
Period size: 431 Copynumber: 2.0 Consensus size: 432
23091416 TTATTATTAT
23091426 TATTATTATTATTATTATTATTATTATTATTATTATTATTAGCTCTAAAATGGCTAAAACGAAAA
1 TATTATTATTATTATTATTATTATTATTATTATTATTATTAGCTCTAAAATGGCTAAAACGAAAA
23091491 TTAGAAAAATTAATTGAGTTGTTATAAAAAAATTGTACCAAATTTGAACTTTCAATGACTTAAAT
66 TTAGAAAAATTAATTGAGTTGTTATAAAAAAATTGTACCAAATTTGAACTTTCAATGACTTAAAT
23091556 TTTTTTTTTCAATTGAACCATTCCTTTAATAAAAATTGTCAGTTGACTGGTTTAATCATTAACAA
131 TTTTTTTTTCAATTGAACCATTCCTTTAATAAAAATTGTCAGTTGACTGGTTTAATCATTAACAA
23091621 CATTGATGTGGCTCACGGAAGCCACTAGAAGTTGCCACATTACATGCCATGTTCCAGTATGTTGG
196 CATTGATGTGGCTCACGGAAGCCACTAGAAGTTGCCACATTACATGCCATGTTCCAGTATGTTGG
23091686 CATGACATGGCATGTTAGCAAGAAATAAAAATTAAAAAAATTAATAAAAGTCTGCATACGAAATG
261 CATGACATGGCATGTTAGCAAGAAATAAAAATTAAAAAAATTAATAAAAGTCTGCATACGAAATG
23091751 AATCTGGACAGATAGTTTTCTAGATTCATTCTAGTTGAGTGCAAACCTATAAAAATTAGAAATTA
326 AATCTGGACAGATAGTTTTCTAGATTCATTCTAGTTGAGTGCAAACCTATAAAAATTAGAAATTA
23091816 TAAAAAATATAAAAAAAATTATATATGGACAATTCAAAATAA
391 TAAAAAATATAAAAAAAATTATATATGGACAATTCAAAATAA
23091858 TATTATTATTA-TATTATTATTATTATTATTATTATTATTAGCTCTAAAATGGCTAAAACGAAAA
1 TATTATTATTATTATTATTATTATTATTATTATTATTATTAGCTCTAAAATGGCTAAAACGAAAA
23091922 TTAGAAAAATTAATTGAGTTGTTATAAAAAAATTGTACCAAATTTGAACTTTCAATGACTTAAAT
66 TTAGAAAAATTAATTGAGTTGTTATAAAAAAATTGTACCAAATTTGAACTTTCAATGACTTAAAT
23091987 TTTTTTTTTCAATTGAACCATTCCTTTAATAAAAATTGTCAGTTGACTGGTTTAATCATTAACAA
131 TTTTTTTTTCAATTGAACCATTCCTTTAATAAAAATTGTCAGTTGACTGGTTTAATCATTAACAA
23092052 CATTGATGTGGCTCACGGAAGCCACTAGAAGTTGCCACATTACATGCCATGTTCCAGTATGTTGG
196 CATTGATGTGGCTCACGGAAGCCACTAGAAGTTGCCACATTACATGCCATGTTCCAGTATGTTGG
23092117 CATGACATGGCATGTTAGCAAGAAATAAAAATTAAAAAAATTAATAAAAGTCTGCATACGAAATG
261 CATGACATGGCATGTTAGCAAGAAATAAAAATTAAAAAAATTAATAAAAGTCTGCATACGAAATG
23092182 AATCTGGACAGATAGTTTTCTAGATTCATTCTAGTTGAGTGCAAACCTATAAAAATTAGAAATTA
326 AATCTGGACAGATAGTTTTCTAGATTCATTCTAGTTGAGTGCAAACCTATAAAAATTAGAAATTA
23092247 TAAAAAATATAAAAAAAATTATATATGGACAATTCAAAATAA
391 TAAAAAATATAAAAAAAATTATATATGGACAATTCAAAATAA
23092289 T
1 T
23092290 TATAATTTTT
Statistics
Matches: 432, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
431 421 0.97
432 11 0.03
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.35
Consensus pattern (432 bp):
TATTATTATTATTATTATTATTATTATTATTATTATTATTAGCTCTAAAATGGCTAAAACGAAAA
TTAGAAAAATTAATTGAGTTGTTATAAAAAAATTGTACCAAATTTGAACTTTCAATGACTTAAAT
TTTTTTTTTCAATTGAACCATTCCTTTAATAAAAATTGTCAGTTGACTGGTTTAATCATTAACAA
CATTGATGTGGCTCACGGAAGCCACTAGAAGTTGCCACATTACATGCCATGTTCCAGTATGTTGG
CATGACATGGCATGTTAGCAAGAAATAAAAATTAAAAAAATTAATAAAAGTCTGCATACGAAATG
AATCTGGACAGATAGTTTTCTAGATTCATTCTAGTTGAGTGCAAACCTATAAAAATTAGAAATTA
TAAAAAATATAAAAAAAATTATATATGGACAATTCAAAATAA
Found at i:23097825 original size:23 final size:21
Alignment explanation
Indices: 23097769--23097826 Score: 62
Period size: 23 Copynumber: 2.7 Consensus size: 21
23097759 AAAGATATGA
*
23097769 CACTTGTGTGCATTTTATTGG
1 CACTTGTGTGCATTTTATTAG
* *
23097790 CGCTTGTGCGCATTTATATTTAG
1 CACTTGTGTGCATTT-TA-TTAG
*
23097813 CATTTGTGTGCATT
1 CACTTGTGTGCATT
23097827 CTTGAAGTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 13 0.45
22 2 0.07
23 14 0.48
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.47
Consensus pattern (21 bp):
CACTTGTGTGCATTTTATTAG
Found at i:23098039 original size:25 final size:23
Alignment explanation
Indices: 23097989--23098039 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
23097979 CGGTAACACA
* *
23097989 ATGATGAGATTGAATATGAAATC
1 ATGATGAGATGGAATATGAAAGC
*
23098012 ATGATGAGTATGGTATATGGAAAGC
1 ATGATGAG-ATGGAATAT-GAAAGC
23098037 ATG
1 ATG
23098040 TTGATACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 8 0.35
24 7 0.30
25 8 0.35
ACGTcount: A:0.39, C:0.04, G:0.27, T:0.29
Consensus pattern (23 bp):
ATGATGAGATGGAATATGAAAGC
Found at i:23098611 original size:22 final size:22
Alignment explanation
Indices: 23098558--23098613 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
23098548 AGTGAAGAAA
*
23098558 TTGTGACACCGACTAGTGGATG
1 TTGTGACACTGACTAGTGGATG
23098580 TTGTGACACTGACTAGTGGATG
1 TTGTGACACTGACTAGTGGATG
*
23098602 TTGTGTCACTGA
1 TTGTGACACTGA
23098614 GAATCGTCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.32
Consensus pattern (22 bp):
TTGTGACACTGACTAGTGGATG
Found at i:23112715 original size:18 final size:18
Alignment explanation
Indices: 23112686--23112748 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
23112676 AAAAAAATGT
*
23112686 TTTGAAATTGAATAAAGA
1 TTTGAAAATGAATAAAGA
* * *
23112704 TTTGTAAATGAATAATGT
1 TTTGAAAATGAATAAAGA
*
23112722 TTTGAAAATGAATGACACGA
1 TTTGAAAATGAAT-A-AAGA
23112742 TTTGAAA
1 TTTGAAA
23112749 TTAACATAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
18 26 0.72
19 1 0.03
20 9 0.25
ACGTcount: A:0.44, C:0.03, G:0.17, T:0.35
Consensus pattern (18 bp):
TTTGAAAATGAATAAAGA
Found at i:23114315 original size:17 final size:17
Alignment explanation
Indices: 23114282--23114327 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
23114272 TTAATTCGGT
*
23114282 TCGAAATCAAGTAATTAA
1 TCGAAAT-AATTAATTAA
*
23114300 TCGAATTAATTAATTAA
1 TCGAAATAATTAATTAA
23114317 TCGAAATAATT
1 TCGAAATAATT
23114328 TTTGTAGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (17 bp):
TCGAAATAATTAATTAA
Found at i:23115102 original size:3 final size:3
Alignment explanation
Indices: 23115094--23115118 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
23115084 GGAGCCAAAT
23115094 GTG GTG GTG GTG GTG GTG GTG GTG G
1 GTG GTG GTG GTG GTG GTG GTG GTG G
23115119 ATGCTGTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
GTG
Found at i:23117031 original size:14 final size:14
Alignment explanation
Indices: 23117004--23117051 Score: 64
Period size: 13 Copynumber: 3.5 Consensus size: 14
23116994 AGTAAAGCTA
23117004 AATTTATAATTTAAT
1 AATTTA-AATTTAAT
*
23117019 AATTTAGATTTAAT
1 AATTTAAATTTAAT
23117033 AA-TTAAATTT-AT
1 AATTTAAATTTAAT
23117045 AATTTAA
1 AATTTAA
23117052 GCTTGATAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 4 0.13
13 11 0.37
14 9 0.30
15 6 0.20
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
AATTTAAATTTAAT
Found at i:23117906 original size:433 final size:434
Alignment explanation
Indices: 23117089--23117955 Score: 1727
Period size: 433 Copynumber: 2.0 Consensus size: 434
23117079 GTTTGGATTT
23117089 GATTAGAATTCTAAATATAAAAAAAGATAGAAAAATTATTTATTAATATCACTTCATTGATATTA
1 GATTAGAATTCTAAATATAAAAAAAGATAGAAAAATTATTTATTAATATCACTTCATTGATATTA
23117154 GAATTATATATAAATTAAAGTTAAGTTTAACTCTATAAATAGCATCTAATACTTAGGCATTTTCA
66 GAATTATATATAAATTAAAGTTAAGTTTAACTCTATAAATAGCATCTAATACTTAGGCATTTTCA
23117219 ATCAAGTAGCAACAAAGAATATTTACCAATAAAAAAAAGGGAGATTGTTAGCAATAATAAGTGTT
131 ATCAAGTAGCAACAAAGAATATTTACCAATAAAAAAAAGGGAGATTGTTAGCAATAATAAGTGTT
23117284 AGAGTTGTGTGACCTGAATTCTTATTAAAGAAAATATAGTGGTAAAACAAGGGGATATGTGTAAG
196 AGAGTTGTGTGACCTGAATTCTTATTAAAGAAAATATAGTGGTAAAACAAGGGGATATGTGTAAG
23117349 GCTTAAGGCCGAGGGTCGAAACTCCTCTTGTATCATTAATTAGAATAAGGTTTTTCAACCTTTAA
261 GCTTAAGGCCGAGGGTCGAAACTCCTCTTGTATCATTAATTAGAATAAGGTTTTTCAACCTTTAA
23117414 ATAGATGTAATCGAAACTTCACTTATATCATTCAGTTTTCAACATTAGCGAATTCTCCTCCTGTG
326 ATAGATGTAATCGAAACTTCACTTATATCATTCAGTTTTCAACATTAGCGAATTCTCCTCCTGTG
23117479 CTCGTGGTTTTTTCCCGAAAGGGTTTCCACGTAAAATCTATATG
391 CTCGTGGTTTTTTCCCGAAAGGGTTTCCACGTAAAATCTATATG
23117523 GATTAGAATT-TAAATATAAAAAAAGATAGAAAAATTATTTATTAATATCACTTCATTGATATTA
1 GATTAGAATTCTAAATATAAAAAAAGATAGAAAAATTATTTATTAATATCACTTCATTGATATTA
23117587 GAATTATATATAAATTAAAGTTAAGTTTAACTCTATAAATAGCATCTAATACTTAGGCATTTTCA
66 GAATTATATATAAATTAAAGTTAAGTTTAACTCTATAAATAGCATCTAATACTTAGGCATTTTCA
23117652 ATCAAGTAGCAACAAAGAATATTTACCAATAAAAAAAAGGGAGATTGTTAGCAATAATAAGTGTT
131 ATCAAGTAGCAACAAAGAATATTTACCAATAAAAAAAAGGGAGATTGTTAGCAATAATAAGTGTT
23117717 AGAGTTGTGTGACCTGAATTCTTATTAAAGAAAATATAGTGGTAAAACAAGGGGATATGTGTAAG
196 AGAGTTGTGTGACCTGAATTCTTATTAAAGAAAATATAGTGGTAAAACAAGGGGATATGTGTAAG
23117782 GCTTAAGGCCGAGGGTCGAAACTCCTCTTGTATCATTAATTAGAATAAGGTTTTTCAACCTTTAA
261 GCTTAAGGCCGAGGGTCGAAACTCCTCTTGTATCATTAATTAGAATAAGGTTTTTCAACCTTTAA
23117847 ATAGATGTAATCGAAACTTCACTTATATCATTCAGTTTTCAACATTAGCGAATTCTCCTCCTGTG
326 ATAGATGTAATCGAAACTTCACTTATATCATTCAGTTTTCAACATTAGCGAATTCTCCTCCTGTG
23117912 CTCGTGGTTTTTTCCCGAAAGGGTTTCCACGTAAAATCTATATG
391 CTCGTGGTTTTTTCCCGAAAGGGTTTCCACGTAAAATCTATATG
23117956 TTTTATTTTT
Statistics
Matches: 433, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
433 423 0.98
434 10 0.02
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.34
Consensus pattern (434 bp):
GATTAGAATTCTAAATATAAAAAAAGATAGAAAAATTATTTATTAATATCACTTCATTGATATTA
GAATTATATATAAATTAAAGTTAAGTTTAACTCTATAAATAGCATCTAATACTTAGGCATTTTCA
ATCAAGTAGCAACAAAGAATATTTACCAATAAAAAAAAGGGAGATTGTTAGCAATAATAAGTGTT
AGAGTTGTGTGACCTGAATTCTTATTAAAGAAAATATAGTGGTAAAACAAGGGGATATGTGTAAG
GCTTAAGGCCGAGGGTCGAAACTCCTCTTGTATCATTAATTAGAATAAGGTTTTTCAACCTTTAA
ATAGATGTAATCGAAACTTCACTTATATCATTCAGTTTTCAACATTAGCGAATTCTCCTCCTGTG
CTCGTGGTTTTTTCCCGAAAGGGTTTCCACGTAAAATCTATATG
Found at i:23121549 original size:9 final size:9
Alignment explanation
Indices: 23121535--23121611 Score: 102
Period size: 9 Copynumber: 8.4 Consensus size: 9
23121525 TTTGGTTAAA
23121535 AATTACCCG
1 AATTACCCG
23121544 AATTACCCG
1 AATTACCCG
23121553 AATTACCCG
1 AATTACCCG
*
23121562 AATTAACCG
1 AATTACCCG
*
23121571 AATTAACCG
1 AATTACCCG
23121580 AATTA-CCG
1 AATTACCCG
*
23121588 AAAAATACCCG
1 --AATTACCCG
23121599 AATTACCCG
1 AATTACCCG
23121608 AATT
1 AATT
23121612 TTTTTATTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
8 3 0.05
9 52 0.84
10 4 0.06
11 3 0.05
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.22
Consensus pattern (9 bp):
AATTACCCG
Found at i:23136920 original size:11 final size:11
Alignment explanation
Indices: 23136880--23136921 Score: 54
Period size: 10 Copynumber: 4.1 Consensus size: 11
23136870 TATTTATAAA
23136880 TAAATATTAA-
1 TAAATATTAAT
*
23136890 T-AATATTATT
1 TAAATATTAAT
23136900 TAAATA-TAAT
1 TAAATATTAAT
23136910 TAAATATTAAT
1 TAAATATTAAT
23136921 T
1 T
23136922 TTTAAGAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 7 0.26
10 11 0.41
11 9 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAAATATTAAT
Found at i:23141114 original size:9 final size:9
Alignment explanation
Indices: 23141055--23141114 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
23141045 TATTTTTTAA
23141055 AAAAATTAT
1 AAAAATTAT
*
23141064 AAAAACTATT
1 AAAAATTA-T
23141074 AAAAATGTTAT
1 AAAAA--TTAT
23141085 AAAAATT-T
1 AAAAATTAT
*
23141093 AAATATT-T
1 AAAAATTAT
23141101 AAAAATTAT
1 AAAAATTAT
23141110 AAAAA
1 AAAAA
23141115 AATAAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
8 14 0.33
9 15 0.35
10 6 0.14
11 6 0.14
12 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:23145240 original size:22 final size:22
Alignment explanation
Indices: 23145217--23145257 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
23145207 TCGTAATCTA
23145217 AAAAATA-TATTAAAAATTAAT
1 AAAAATATTATTAAAAATTAAT
*
23145238 AAAAATATTTTTAAAAATTA
1 AAAAATATTATTAAAAATTA
23145258 TTTTCAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAAATATTATTAAAAATTAAT
Found at i:23151898 original size:21 final size:20
Alignment explanation
Indices: 23151852--23151903 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
23151842 ATTTTTTACA
*
23151852 ATTTTTTTATAGATTTATAAG
1 ATTTTTTTA-ACATTTATAAG
* *
23151873 TTTTTTTTAACATTTTTAATG
1 ATTTTTTTAACATTTATAA-G
*
23151894 ATTTTATTAA
1 ATTTTTTTAA
23151904 AAAATTGAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.62
Consensus pattern (20 bp):
ATTTTTTTAACATTTATAAG
Found at i:23152920 original size:21 final size:21
Alignment explanation
Indices: 23152869--23152922 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
23152859 AATGTTTATA
23152869 TTTAAT-TATTTAAAATAAAG
1 TTTAATATATTTAAAATAAAG
*
23152889 TTTATATATATTCT-AAATAAAT
1 TTTA-ATATATT-TAAAATAAAG
23152911 TTTAATATATTT
1 TTTAATATATTT
23152923 GTTACTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 5 0.17
21 9 0.30
22 15 0.50
23 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
TTTAATATATTTAAAATAAAG
Found at i:23153033 original size:13 final size:13
Alignment explanation
Indices: 23153017--23153046 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23153007 TAAATCAAAA
*
23153017 TTTTTAAAAATAC
1 TTTTTAAAAACAC
23153030 TTTTTAAAAACAC
1 TTTTTAAAAACAC
23153043 TTTT
1 TTTT
23153047 CCACGTCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (13 bp):
TTTTTAAAAACAC
Found at i:23155214 original size:2 final size:2
Alignment explanation
Indices: 23155209--23155242 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
23155199 TATATATATA
23155209 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
23155243 GTAATTTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:23157047 original size:43 final size:43
Alignment explanation
Indices: 23157000--23157087 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
23156990 TCGCTTCGTT
*
23157000 AACTCAATCCAATTGCAAGTTGAACAGCTTAAAGAAAATTTAA
1 AACTCAATCCAATTGCAAGTTGAACAACTTAAAGAAAATTTAA
23157043 AACTCAATCCAATTGCAAGTTGAACAACTTAAAGAAAATTTAA
1 AACTCAATCCAATTGCAAGTTGAACAACTTAAAGAAAATTTAA
23157086 AA
1 AA
23157088 TCTTTTTGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.25
Consensus pattern (43 bp):
AACTCAATCCAATTGCAAGTTGAACAACTTAAAGAAAATTTAA
Found at i:23158970 original size:89 final size:89
Alignment explanation
Indices: 23158819--23158999 Score: 362
Period size: 89 Copynumber: 2.0 Consensus size: 89
23158809 AAAACTGAGT
23158819 AAACCAATCAAGTGTTTCAGTCTTTTCTCAACTCTTCCATTGTTATTGTGATGGATTGCAATTTG
1 AAACCAATCAAGTGTTTCAGTCTTTTCTCAACTCTTCCATTGTTATTGTGATGGATTGCAATTTG
23158884 CTGTCATTTTCAGAGTTTCTTTTG
66 CTGTCATTTTCAGAGTTTCTTTTG
23158908 AAACCAATCAAGTGTTTCAGTCTTTTCTCAACTCTTCCATTGTTATTGTGATGGATTGCAATTTG
1 AAACCAATCAAGTGTTTCAGTCTTTTCTCAACTCTTCCATTGTTATTGTGATGGATTGCAATTTG
23158973 CTGTCATTTTCAGAGTTTCTTTTG
66 CTGTCATTTTCAGAGTTTCTTTTG
23158997 AAA
1 AAA
23159000 TGGTGTTCTT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 92 1.00
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.44
Consensus pattern (89 bp):
AAACCAATCAAGTGTTTCAGTCTTTTCTCAACTCTTCCATTGTTATTGTGATGGATTGCAATTTG
CTGTCATTTTCAGAGTTTCTTTTG
Found at i:23160246 original size:22 final size:22
Alignment explanation
Indices: 23160191--23160246 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
23160181 TTTTATAATA
*
23160191 TTTATGAATTTTTTTACAAATT
1 TTTATGATTTTTTTTACAAATT
* *
23160213 TTTATAAGTTTTTTTTA-ACATT
1 TTTATGA-TTTTTTTTACAAATT
23160235 TTTAATGATTTT
1 TTT-ATGATTTT
23160247 ATTAAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (22 bp):
TTTATGATTTTTTTTACAAATT
Found at i:23170030 original size:13 final size:13
Alignment explanation
Indices: 23170003--23170040 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
23169993 ATCCAAGGAT
23170003 TTTGCAAAAAGAAA
1 TTTGCAAAAA-AAA
23170017 TTTGCAAAAAAAA
1 TTTGCAAAAAAAA
23170030 TTCT-CAAAAAA
1 TT-TGCAAAAAA
23170041 TGTTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.58, C:0.11, G:0.08, T:0.24
Consensus pattern (13 bp):
TTTGCAAAAAAAA
Done.