Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3234

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 780
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23


Found at i:446 original size:102 final size:102

Alignment explanation


    Indices: 169--437  Score: 459
    Period size: 102  Copynumber: 2.6  Consensus size: 102

        159 ATAATAATTT

                       *                   *                     *           
        169 AGCCGAAATGCCACTCACTAACGTGCACCTCAAGGCTTATACGTTAGGAAATACTTTAC-AATCG
          1 AGCCGAAATGCTACTCACTAACGTGCACCTCTAGGCTTATACGTTAGGAAATATTTTACAAAT-G

                                                  
        233 ACGATAAAATCCTAAAAATGAAATCAAAATAAAACGGA
         65 ACGATAAAATCCTAAAAATGAAATCAAAATAAAACGGA

                                                    *                        
        271 AGCCGAAATGCTACTCACTAACGTGCACCTCTAGGCTTATGCGTTAGGAAATATTTTACAAATGA
          1 AGCCGAAATGCTACTCACTAACGTGCACCTCTAGGCTTATACGTTAGGAAATATTTTACAAATGA

                        **                   *   
        336 CGATAAAATCCTGGAAATGAAATCAAAATAAAAGGGA
         66 CGATAAAATCCTAAAAATGAAATCAAAATAAAACGGA

                                                                             
        373 AGCCGAAATGCTACTCACTAACGTGCACCTCTAGGCTTATACGTTAGGAAATATTTTACAAATGA
          1 AGCCGAAATGCTACTCACTAACGTGCACCTCTAGGCTTATACGTTAGGAAATATTTTACAAATGA

        438 AATTAAAATA


Statistics
Matches: 158,  Mismatches: 8, Indels: 2
        0.94            0.05        0.01

Matches are distributed among these distances:
 102  155  0.98
 103    3  0.02

ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23


Consensus pattern (102 bp):   
AGCCGAAATGCTACTCACTAACGTGCACCTCTAGGCTTATACGTTAGGAAATATTTTACAAATGA
CGATAAAATCCTAAAAATGAAATCAAAATAAAACGGA
Done.