Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold2219
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619
Length: 1033
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Found at i:795 original size:155 final size:155
Alignment explanation
Indices: 510--818 Score: 528
Period size: 155 Copynumber: 2.0 Consensus size: 155
500 GAAGTCCTAC
510 TTGGAGTCTAAAACGCAACTACATTAGGTGAGATATCGTTGCGACATCATGACTCTCCTCTTCAT
1 TTGGAGTCTAAAACGCAACTACATTAGGTGAGATATCGTTGCGACATCATGACTCTCCTCTTCAT
*
575 GACATCGCCCCTGCTCCTACCTCAAGAGATCTTTGCTCGTCCCGGTGACCCTCGTCACGACGTTG
66 GACATCGCCCCTGCTCCTACCTCAAGAGATCTTTGCTCGTCCCGATGACCCTCGTCACGACGTTG
* *
640 CCGCTTGCTCGTCTTGACTTCATGG
131 CCGCTTGCTCGTCGTGACATCATGG
* * * *
665 TTGGAGTCTAAAACGCAGCTACATTAGGTGAGATATTGTTGCGACGTCATGACTCTCCTCTTCGT
1 TTGGAGTCTAAAACGCAACTACATTAGGTGAGATATCGTTGCGACATCATGACTCTCCTCTTCAT
* * *
730 GACGTCGCCCCTGCTCCTACCTCAAGAGATCTTTGCTTGTCCCGATGACCCTCGTCACGATGTTG
66 GACATCGCCCCTGCTCCTACCTCAAGAGATCTTTGCTCGTCCCGATGACCCTCGTCACGACGTTG
795 CCGCTTGCTCGTCGTGACATCATG
131 CCGCTTGCTCGTCGTGACATCATG
819 CATCTGTTTC
Statistics
Matches: 144, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
155 144 1.00
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (155 bp):
TTGGAGTCTAAAACGCAACTACATTAGGTGAGATATCGTTGCGACATCATGACTCTCCTCTTCAT
GACATCGCCCCTGCTCCTACCTCAAGAGATCTTTGCTCGTCCCGATGACCCTCGTCACGACGTTG
CCGCTTGCTCGTCGTGACATCATGG
Done.