Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold214
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1307275
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 88184 characters in sequence are not A, C, G, or T
File 5 of 5
Found at i:1231235 original size:41 final size:41
Alignment explanation
Indices: 1231178--1231337 Score: 212
Period size: 41 Copynumber: 3.9 Consensus size: 41
1231168 CATATTCGCG
* * * *
1231178 GCGTTTGGACCCAAAACGCTATTATTGCTCAACGTTTTGCA
1 GCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTTGCA
* * *
1231219 GCGTTTGGACCAAAAACACCACTATTGCTCAAATTTTTGCG
1 GCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTTGCA
* * *
1231260 GCGTTTGGACAAAAAATGCCACTATTGCTCAACTTTTTGCT
1 GCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTTGCA
* *
1231301 GCGTTTGGACCAAAAATGCCACTATTGCTCACCTTTT
1 GCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTT
1231338 ACAGTGTTTT
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 105 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (41 bp):
GCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTTGCA
Found at i:1233151 original size:25 final size:26
Alignment explanation
Indices: 1233114--1233164 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
1233104 GTTGTAAATA
1233114 AGAAAAATATCTTTAGA-AATTTTCT
1 AGAAAAATATCTTTAGAGAATTTTCT
* *
1233139 AGAATAATCTCTTTAGAGAATTTTCT
1 AGAAAAATATCTTTAGAGAATTTTCT
1233165 CTCTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (26 bp):
AGAAAAATATCTTTAGAGAATTTTCT
Found at i:1233292 original size:17 final size:17
Alignment explanation
Indices: 1233270--1233302 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1233260 TTAATCACTT
*
1233270 TAATATTAAATTTAATC
1 TAATATTAAATCTAATC
1233287 TAATATTAAATCTAAT
1 TAATATTAAATCTAAT
1233303 TAAAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATATTAAATCTAATC
Found at i:1233596 original size:20 final size:18
Alignment explanation
Indices: 1233544--1233655 Score: 70
Period size: 20 Copynumber: 6.1 Consensus size: 18
1233534 ATCTACAAGA
1233544 TTAATATTAAATTAA-AT
1 TTAATATTAAATTAATAT
1233561 TTAATATTAAGA-TAATCACT
1 TTAATATTAA-ATTAAT-A-T
*
1233581 TTAATATTAAATTAATAAA
1 TTAATATTAAATTAAT-AT
* * *
1233600 CTACTATTAAGATAAATA-
1 TTAATATTAA-ATTAATAT
*
1233618 TTAA-ATTAAATCAAATAT
1 TTAATATTAAAT-TAATAT
* *
1233636 TAAACTATTAAAATAATAT
1 TTAA-TATTAAATTAATAT
1233655 T
1 T
1233656 ATTTTTGGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
16 2 0.03
17 23 0.31
18 6 0.08
19 17 0.23
20 27 0.36
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (18 bp):
TTAATATTAAATTAATAT
Found at i:1237607 original size:24 final size:24
Alignment explanation
Indices: 1237570--1237620 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
1237560 TATCTCATTA
*
1237570 AATATCTATTTTAT-AAATGTTTAT
1 AATATCTATATTATGAAATG-TTAT
* *
1237594 AATATTTATATTATGTAATGTTAT
1 AATATCTATATTATGAAATGTTAT
1237618 AAT
1 AAT
1237621 TGTGATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (24 bp):
AATATCTATATTATGAAATGTTAT
Found at i:1240975 original size:34 final size:35
Alignment explanation
Indices: 1240917--1240983 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
1240907 CAAACACCAG
* *
1240917 AAAATATTTTCCAGTAAATGATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
1240952 AAAACATTTTTCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
1240984 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:1244265 original size:12 final size:12
Alignment explanation
Indices: 1244250--1244288 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
1244240 TGCCAGGCCG
1244250 TGTGCTAAGCCA
1 TGTGCTAAGCCA
1244262 TGTGCTAAGCCA
1 TGTGCTAAGCCA
*
1244274 TGTGCTAGGCCA
1 TGTGCTAAGCCA
1244286 TGT
1 TGT
1244289 AACGGCCTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (12 bp):
TGTGCTAAGCCA
Found at i:1244397 original size:70 final size:68
Alignment explanation
Indices: 1244274--1244412 Score: 188
Period size: 70 Copynumber: 2.0 Consensus size: 68
1244264 TGCTAAGCCA
* * *
1244274 TGTGCTAGGCCATGTAACGGCCTGACTTGCAGCTCTTTGAAAGCTACAGGGGACACATGGCTATG
1 TGTGCTAGGCCATGTAACAGCCTGACTTGCAACTCTTTGAAAGCTACAAGGGACACATGG--ATG
1244339 TGTTG
64 TGTTG
* * * * *
1244344 TGTGCTAGGCCGTGTAACAGCTTGACTTGCAACTCTTTTAAAGTTATAAGGGACACATGGATGTG
1 TGTGCTAGGCCATGTAACAGCCTGACTTGCAACTCTTTGAAAGCTACAAGGGACACATGGATGTG
1244409 TTG
66 TTG
1244412 T
1 T
1244413 CTGACCATGT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
68 9 0.15
70 52 0.85
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (68 bp):
TGTGCTAGGCCATGTAACAGCCTGACTTGCAACTCTTTGAAAGCTACAAGGGACACATGGATGTG
TTG
Found at i:1249533 original size:50 final size:50
Alignment explanation
Indices: 1249459--1249732 Score: 313
Period size: 51 Copynumber: 5.4 Consensus size: 50
1249449 TTTGGGGTTT
*
1249459 TTCACA-AGTACTACACACGTGATCAAGTTTTACGGTTCACGTAGTAGCC
1 TTCACATAGTACTACACACGTGACCAAGTTTTACGGTTCACGTAGTAGCC
*
1249508 TTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAGTAGCC
1 TTCACATAGTACTACACACGTGACCAAGTTTTACGGTTCACGTAGTAGCC
* *
1249558 TTCACATAGTACCTACACACG-GACCAAAGATTTT-CGGTACACATAGTAGCC
1 TTCACATAGTA-CTACACACGTGACC-AAG-TTTTACGGTTCACGTAGTAGCC
* * *** *
1249609 TTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
1 TTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTTCACGTAGTAGCC
* * * ** *
1249660 TTCACACAGTACTACACACGTGACCAAAGCTTTT-TGGTACATATTGTAGCC
1 TTCACATAGTACTACACACGTGACC-AAG-TTTTACGGTTCACGTAGTAGCC
*
1249711 TTCACACAGTACTACACACGTG
1 TTCACATAGTACTACACACGTG
1249733 TTCATCGATA
Statistics
Matches: 193, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
49 9 0.05
50 66 0.34
51 110 0.57
52 5 0.03
53 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
TTCACATAGTACTACACACGTGACCAAGTTTTACGGTTCACGTAGTAGCC
Found at i:1249699 original size:102 final size:99
Alignment explanation
Indices: 1249459--1249732 Score: 345
Period size: 102 Copynumber: 2.7 Consensus size: 99
1249449 TTTGGGGTTT
* * *
1249459 TTCACAAGTACTACACACGTGATC-AAGTTTTACGGTTCACGTAGTAGCCTTCACATAGTACTAC
1 TTCACAAGTACTACACACGTGACCAAAGTTTT-CGGTACACATAGTAGCCTTCACATAGTACTAC
* ** *
1249523 ACACGTGATCAAGTTTTACGGTTCACGTAGTAGCC
65 ACACGTGACCAACATTTACGATTCACGTAGTAGCC
*
1249558 TTCACATAGTACCTACACACG-GACCAAAGATTTTCGGTACACATAGTAGCCTTCACTTAGTACT
1 TTCACA-AGTA-CTACACACGTGACCAAAG-TTTTCGGTACACATAGTAGCCTTCACATAGTACT
* *
1249622 ACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
63 ACACACGTGACCAACATTTA-CGATTCACGTAGTAGCC
* * * *
1249660 TTCACACAGTACTACACACGTGACCAAAGCTTTTTGGTACATATTGTAGCCTTCACACAGTACTA
1 TTCACA-AGTACTACACACGTGACCAAAG-TTTTCGGTACACATAGTAGCCTTCACATAGTACTA
1249725 CACACGTG
64 CACACGTG
1249733 TTCATCGATA
Statistics
Matches: 151, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
99 6 0.04
100 7 0.05
101 63 0.42
102 75 0.50
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (99 bp):
TTCACAAGTACTACACACGTGACCAAAGTTTTCGGTACACATAGTAGCCTTCACATAGTACTACA
CACGTGACCAACATTTACGATTCACGTAGTAGCC
Found at i:1250252 original size:30 final size:31
Alignment explanation
Indices: 1250199--1250257 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
1250189 GCTTCGACTC
*
1250199 AACTTTTGTCAAAATTACGATTTTGTCCCTA
1 AACTTTTGTCAAAATTACAATTTTGTCCCTA
* * *
1250230 AACTTTTG-CATAATTATAATTTTTTCCC
1 AACTTTTGTCAAAATTACAATTTTGTCCC
1250258 NNNNNNNNNN
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.29, C:0.19, G:0.07, T:0.46
Consensus pattern (31 bp):
AACTTTTGTCAAAATTACAATTTTGTCCCTA
Found at i:1254392 original size:39 final size:39
Alignment explanation
Indices: 1254349--1254424 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
1254339 GCTATCAAGA
1254349 GTACCAAAGTACAACAGGGGCACGTAAGTGCGATTAGGG
1 GTACCAAAGTACAACAGGGGCACGTAAGTGCGATTAGGG
* *
1254388 GTACCGAAGTACAATAGGGGCACGTAAGTGCGATTAG
1 GTACCAAAGTACAACAGGGGCACGTAAGTGCGATTAG
1254425 AGATATAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (39 bp):
GTACCAAAGTACAACAGGGGCACGTAAGTGCGATTAGGG
Found at i:1254397 original size:20 final size:20
Alignment explanation
Indices: 1254364--1254424 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
1254354 AAAGTACAAC
1254364 AGGGGCACGTAAGTGCGATT
1 AGGGGCACGTAAGTGCGATT
* * *
1254384 AGGGGTACCG-AAGTAC-AAT
1 AGGGGCA-CGTAAGTGCGATT
1254403 AGGGGCACGTAAGTGCGATT
1 AGGGGCACGTAAGTGCGATT
1254423 AG
1 AG
1254425 AGATATAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
18 2 0.06
19 13 0.41
20 15 0.47
21 2 0.06
ACGTcount: A:0.30, C:0.15, G:0.38, T:0.18
Consensus pattern (20 bp):
AGGGGCACGTAAGTGCGATT
Found at i:1254416 original size:19 final size:19
Alignment explanation
Indices: 1254355--1254416 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
1254345 AAGAGTACCA
*
1254355 AAGTACAACAGGGGCACGT
1 AAGTACAATAGGGGCACGT
* * *
1254374 AAGTGCGATTAGGGGTACCG-
1 AAGTAC-AATAGGGGCA-CGT
1254394 AAGTACAATAGGGGCACGT
1 AAGTACAATAGGGGCACGT
1254413 AAGT
1 AAGT
1254417 GCGATTAGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 2 0.06
19 17 0.52
20 12 0.36
21 2 0.06
ACGTcount: A:0.34, C:0.16, G:0.34, T:0.16
Consensus pattern (19 bp):
AAGTACAATAGGGGCACGT
Found at i:1259695 original size:11 final size:11
Alignment explanation
Indices: 1259679--1259703 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1259669 TAGTCCCATA
1259679 AAAAATAAAAT
1 AAAAATAAAAT
1259690 AAAAATAAAAT
1 AAAAATAAAAT
1259701 AAA
1 AAA
1259704 TATTTTCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:1260294 original size:46 final size:45
Alignment explanation
Indices: 1260244--1260333 Score: 101
Period size: 45 Copynumber: 2.0 Consensus size: 45
1260234 AGAATGAATA
*
1260244 GAAATAAAGAAATGAAAAACATTT-AGAAATGATTATGGTTTTCTCC
1 GAAATAAAGAAATG-AAAACATTTGA-AAATGAATATGGTTTTCTCC
** * * *
1260290 GAAATGGAGAAATGGAATCATTTGAAAATGAATGTGGTTTTCTC
1 GAAATAAAGAAATGAAAACATTTGAAAATGAATATGGTTTTCTC
1260334 AAAAATGGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
45 24 0.65
46 13 0.35
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (45 bp):
GAAATAAAGAAATGAAAACATTTGAAAATGAATATGGTTTTCTCC
Found at i:1262406 original size:25 final size:24
Alignment explanation
Indices: 1262360--1262406 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
1262350 TGAGCATCCT
* *
1262360 GATATTGGCTCTCTTGAGCTTCTC
1 GATATTGGCTCTCATGAACTTCTC
*
1262384 GATATTTGGCTTTCATGAACTTC
1 GATA-TTGGCTCTCATGAACTTC
1262407 CCGTCATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.17, C:0.21, G:0.19, T:0.43
Consensus pattern (24 bp):
GATATTGGCTCTCATGAACTTCTC
Found at i:1262497 original size:26 final size:27
Alignment explanation
Indices: 1262443--1262498 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
1262433 CGACATATGG
*
1262443 CTCTAACGAGCTTCCTTATTTAAGGCT
1 CTCTAACGAGCTTCCTCATTTAAGGCT
* * *
1262470 CTCTAATGAGCTTCC-CGTTTATGGCT
1 CTCTAACGAGCTTCCTCATTTAAGGCT
1262496 CTC
1 CTC
1262499 CGGAGCTTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.38
Consensus pattern (27 bp):
CTCTAACGAGCTTCCTCATTTAAGGCT
Found at i:1262552 original size:24 final size:24
Alignment explanation
Indices: 1262501--1262553 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
1262491 TGGCTCTCCG
* *
1262501 GAGCTTCCTGATATTGGCTTGCAT
1 GAGCTTCCTGATATTGGCTTGAAA
*
1262525 GAGCTT-CTCGATTTTGGCTTGAAA
1 GAGCTTCCT-GATATTGGCTTGAAA
1262549 GAGCT
1 GAGCT
1262554 ACCCGTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (24 bp):
GAGCTTCCTGATATTGGCTTGAAA
Found at i:1269549 original size:24 final size:24
Alignment explanation
Indices: 1269513--1269629 Score: 83
Period size: 25 Copynumber: 4.8 Consensus size: 24
1269503 GACACACTGC
* * * *
1269513 AGCTCACAAGAGCGTCCCGTTTTT
1 AGCTCTCATGAGCATCCCGTATTT
1269537 AGCTCTCATGAGCATCCCG-ATATT
1 AGCTCTCATGAGCATCCCGTAT-TT
* * * *
1269561 GGCTCTCTTGAGCTTCTCGATATTT
1 AGCTCTCATGAGCATCCCG-TATTT
* * * *
1269586 GGCTCTCACGAGCTTCCCATCATTT
1 AGCTCTCATGAGCATCCCGT-ATTT
*
1269611 AGCTCTTATGAGCATCCCG
1 AGCTCTCATGAGCATCCCG
1269630 ACATATGGCT
Statistics
Matches: 72, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
23 1 0.01
24 34 0.47
25 35 0.49
26 2 0.03
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (24 bp):
AGCTCTCATGAGCATCCCGTATTT
Found at i:1269598 original size:25 final size:25
Alignment explanation
Indices: 1269538--1269703 Score: 124
Period size: 25 Copynumber: 6.6 Consensus size: 25
1269528 CCCGTTTTTA
*
1269538 GCTCTCATGAGCATCCCGATA-TTG
1 GCTCTCATGAGCTTCCCGATATTTG
* *
1269562 GCTCTCTTGAGCTTCTCGATATTTG
1 GCTCTCATGAGCTTCCCGATATTTG
* *
1269587 GCTCTCACGAGCTTCCC-ATCATTTA
1 GCTCTCATGAGCTTCCCGAT-ATTTG
* * * *
1269612 GCTCTTATGAGCATCCCGACATATG
1 GCTCTCATGAGCTTCCCGATATTTG
* * * *
1269637 GCTCTTACGAGCTTCCTGAT-TTAAG
1 GCTCTCATGAGCTTCCCGATATT-TG
* *
1269662 GCTCTCTCATTAGCTTCCTGATA-TTG
1 G--CTCTCATGAGCTTCCCGATATTTG
*
1269688 GCTCACATGAGCTTCC
1 GCTCTCATGAGCTTCC
1269704 TGAGTATGGC
Statistics
Matches: 110, Mismatches: 25, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
24 34 0.31
25 56 0.51
26 3 0.03
27 17 0.15
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGATATTTG
Found at i:1290894 original size:49 final size:50
Alignment explanation
Indices: 1290835--1290937 Score: 147
Period size: 49 Copynumber: 2.1 Consensus size: 50
1290825 ATAGTTCTTT
* *
1290835 TATTTTACATTAATTAGAATAAGGTTTTTCAACCT-TACT-ACACTTCATC
1 TATTTGACATTAATTAGAACAAGGTTTTTCAACCTAT-CTGACACTTCATC
* *
1290884 TATTTGACATTAATTAGAACAAGGTTTTTCAATCTATTTGACACTTCATC
1 TATTTGACATTAATTAGAACAAGGTTTTTCAACCTATCTGACACTTCATC
1290934 TATT
1 TATT
1290938 CATATTGTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
49 33 0.69
50 15 0.31
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.44
Consensus pattern (50 bp):
TATTTGACATTAATTAGAACAAGGTTTTTCAACCTATCTGACACTTCATC
Found at i:1293113 original size:25 final size:25
Alignment explanation
Indices: 1293084--1293200 Score: 146
Period size: 25 Copynumber: 4.7 Consensus size: 25
1293074 TCCAACCCAC
* *
1293084 AGCTCGTGTAAGCATACCGATTTAT
1 AGCTCGTGTGAGCATACCGATTCAT
* * *
1293109 AGCTCGTGAGAGAATACCGA-TCTAC
1 AGCTCGTGTGAGCATACCGATTC-AT
*
1293134 AGCTCGAGTGAGCATACCGATTCAT
1 AGCTCGTGTGAGCATACCGATTCAT
*
1293159 AGCTCGTATGAGCATACCGATTCAT
1 AGCTCGTGTGAGCATACCGATTCAT
*
1293184 AGCTCGTATGAGCATAC
1 AGCTCGTGTGAGCATAC
1293201 ATGTACATGA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
24 1 0.01
25 76 0.96
26 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACCGATTCAT
Done.