Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1426

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1789
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32


Found at i:542 original size:100 final size:100

Alignment explanation


    Indices: 364--563  Score: 328
    Period size: 100  Copynumber: 2.0  Consensus size: 100

        354 TTTGATCAAA

                    *                *               *                       
        364 GTAGCTTTGTTTCCACACACAAACAGTTCATTTCTCAGATTGTCTTGGATCCCTTCAAAGGAAAA
          1 GTAGCTTTATTTCCACACACAAACAATTCATTTCTCAGATTATCTTGGATCCCTTCAAAGGAAAA

                                               
        429 CATTTTCTCAAACATAATCAATAAAATTGAAAATG
         66 CATTTTCTCAAACATAATCAATAAAATTGAAAATG

                                                **                           
        464 GTAGCTTTATTTCCACACACAAACAATTCATTTCTCCTATTATCTTGGATCCCTTCAAAGGAAAA
          1 GTAGCTTTATTTCCACACACAAACAATTCATTTCTCAGATTATCTTGGATCCCTTCAAAGGAAAA

                    *         **               
        529 CATTTTCTGAAACATAATTGATAAAATTGAAAATG
         66 CATTTTCTCAAACATAATCAATAAAATTGAAAATG

        564 ATCAAAACAA


Statistics
Matches: 92,  Mismatches: 8, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
 100   92  1.00

ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33


Consensus pattern (100 bp):   
GTAGCTTTATTTCCACACACAAACAATTCATTTCTCAGATTATCTTGGATCCCTTCAAAGGAAAA
CATTTTCTCAAACATAATCAATAAAATTGAAAATG
Done.