Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold790
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6474
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Found at i:558 original size:303 final size:302
Alignment explanation
Indices: 1--5274 Score: 7227
Period size: 303 Copynumber: 17.4 Consensus size: 302
* * *
1 TAAGCGTGCGTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCAGGGAAGTCCTCGTGTTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* * * * * *
66 CCTCCTATTTTAATTCATATAATAGTTTTTTTAGTTGCGTTTTCTCGACGTGGTGTAACACATTC
66 CCTCCCATTTTATTTCATATAAT-TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
* * * * * *
131 ATTATTTGCGTTTTGTGAAATAAATAATTTGGAACGATATTTGGTCGAATTTGTATTCAATTTCG
130 GTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCG
* * * * * *
196 AGGCGCAAGTGCGATAAGAGACAGCCTTTATATGAATAGATCGCCCAAGAGTTGAAGGGTGCGAC
195 AGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGAT
*
261 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCTGCAGT
260 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* *
304 TAAGCGCGCTTGGGCGATAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* * * * *
369 CCTCCCATTTTAATTCATATAATGGTTTTTTTAGTTGCGTTTTCTCGACGTGGTGTAACACATTC
66 CCTCCCATTTTATTTCATATAAT-TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
* * * * *
434 GTTATTTGCGTTTTGTGAAATAAATAATTTGGAACGATATTTGGTCGAATTTGTATTCAATTTCG
130 GTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCG
* * * * * *
499 AGGCGCAAGTGCGATAAGAGACAGCCTTTATATGAATAGATCGCCCAAGAGTTGAAGGGTGCGAC
195 AGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGAT
564 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
260 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
*
607 CAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* * * * *
672 CCTCCCATTTTAATTCATATAATGGTTTTTTTAGTTGCGTTTTCTCGACGTGGTGTAACACATTC
66 CCTCCCATTTTATTTCATATAAT-TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
* * * * **
737 GTTATTTGCGTTTTGTGAAATAAATAATTTGGAACGATATTTGGTCGAATTTGTATTCAGTTTCG
130 GTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCG
* * * * * *
802 AGGCGCAAGTGCAATAAGAGGCAGGCTATATATGAATAGATTGCGCAAGAGTTGACGGGTCCGAT
195 AGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGAT
*
867 CATACCAGCACTAATGCTCCGGATCCCATCAGAACTCCGCAGT
260 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* ** * * *
910 TAAGCTTATTTGGGCGAGAGTAGAACTAGCATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACT
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* *
975 CCTCCCATTTTATTACATATAATGTTTTTTGTTAGTTGCATTTTCTCCATGTGGTGTAACTCATT
66 CCTCCCATTTTATTTCATATAAT-TTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
* * * *
1040 CGTTATTCGCGTTTTGCGAAATAAATAATTTGAAACAATATTTGGTTGAATTTGCATTCAAATTC
129 CGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
* *
1105 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAAGATATTGCACAAGAGTTGACGGGTGCGA
194 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
* **
1170 TCATACCAGCACTAATGCTCTAGATCCCATCAGAACTCCGCAGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* ** * * * *
1214 TAAGCATATTTGGGCAAGAGTAGAACTAGGATGGGTGACCTCCTTGGAAGTCCTCGTGTTGCACT
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* * *
1279 CCTCCCATTTTATTACATATAATGTTTTTTGTTAGTCGCATTTTCTCCATGTGGTGTAACTCATT
66 CCTCCCATTTTATTTCATATAAT-TTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
* * * * * * * *
1344 CGTTATTTGTGTTTTGCAAAATAAATAAATTGAAACGATATTTTGTCTAATTTGCCTTCAAGTTC
129 CGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
* * *
1409 AAGGCGCAAGTGGGATAAGGGGCAGCCTTTATATGAATATATTGCACAAGAGTTGACGGGTGCGA
194 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
* **
1474 TCATACCAGCACTAATGCTCTAGATCCCATCAGAACTCCGCAGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* ** * * * *
1518 TAAGCATATTTGGGCAAGAGTAGAACTAGGATGGGTGACCTCCTTGGAAGTCCTCGTGTTGCTCC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
1583 CCTCCCATTTTATTTCATATAATATTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
66 CCTCCCATTTTATTTCATATAAT-TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
* * *
1648 GTTATTCGCGTTTTGCGAAATAAATAAATTGAAACGATATTTGGTCGAATTTGCATTCAAATTCG
130 GTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCG
* * *
1713 AGGCGCATGTGCGATAAGGGGCAGCC-TTATATGAATAG--CGCA-AA-AGTTGACGGGTGTGAT
195 AGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGAT
*
1773 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGT
260 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* * * * *
1816 TCAGCCTGCTTGGGCGAAAGTAGTACTAGGATGGGTAACCTCCTGGGAAGTCCTCGTGTTGCTCC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
*
1881 CCTCCCATTTTATTTCATATAATGTTTTTTGTTAGTTGCATTTTCTCCACATGGTGTAACTCATT
66 CCTCCCATTTTATTTCATATAAT-TTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
* * * * *
1946 CATTATTTTCGTTTTGAGAAATAAATAATTTGAAATGATATTCGGTCGAATTTGCATTAAAATTC
129 CGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
* *
2011 GAGGCGCAAGTGCGATAAGGGACAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGA
194 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
*
2076 TCATACCAGCACTAATGCACCGGATCCCATCAGAGCTCCGCAGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* * * * * *
2120 CAAGCGTGCCTGGGCAAGAGTAGTAGTAGGATGGGTGACCTCCTCGGAAGTCCTCGTATTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* *
2185 CCTCCCATTTTATTTCATATAATTTTTATTT-GTTGCATTTTCTTCACGTGGTGTAACTCATTCG
66 CCTCCCATTTTATTTCATATAATTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCG
* * *
2249 TTATTTGCGTTTTGCGAAATAAATAATTTGGAACGATATTTGGTCGAATCTGTATTAAAATTCGA
131 TTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGA
* ** * * * *
2314 GGCACATTTTCGATAAGTGCCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATC
196 GGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATC
* * * * *
2379 ATACTAGCCCTAATGCATCGGGTCCAATCAGAACTCCGCA-T
261 ATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* *
2420 TGAAGCGTTCTTGGGTGAGAGTAGTA-TGAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCA
1 T-AAGCGTGCTTGGGCGAGAGTAGTACT-AGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCA
* * * *
2484 CCCCTCCCATTTTATTTTATATAATATGTTTTTAGTTGCATTTCCTCCACGTGGTGTAACTCATT
64 CCCCTCCCATTTTATTTCATATAATTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
* * * * * * *
2549 TGTTATTTGCGTTATGCGAAATAAATAATTTGAAACAATATTTGGCCAAACTTGAATTAAAATTC
129 CGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
* *
2614 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACAGGTGCGA
194 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
* * *
2679 TCATACCAGCACTAATGCACCGGATCCCATCAAAACGCCGTAGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* * *
2723 TAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTTGGAAGTCCTCCTGTTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
*
2788 CCTCCAATTTTATTTCATATAATGTTTTTTGTTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
66 CCTCCCATTTTATTTCATATAAT-TTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
* * * * *
2853 CGTTATTTGCGTTATGCGAACTAAATAATTTGAAACAATATTTGGTCGAATTTGTATTAAACTTC
129 CGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
* * * * * *
2918 GAGGCGCAAATGGGATCAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGGTGACGGGTGCAA
194 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
* * *
2983 TCATACCAGCACTAATGCACCGGATCCCATCAAAACGCCGTAGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
3027 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* *
3092 CCTCCCATTTTATTTCATATAA-TTTTTTTT-GTTGCATTTGCTCCACGTGGTGTAAGTCATTCG
66 CCTCCCATTTTATTTCATATAATTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCG
* * ** * * * * *
3155 TTATTTGTGTTTTGC-AAGATAAATAAATTGAAACGATATTTTCTCCAATTTGCCTTCACATTCA
131 TTATTTGCGTTTTGCGAA-ATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCG
* * * *
3219 AGGCACAAGTG-GAATAAGGGGCAGCCTTTATATGAATATATTGCGCAAGAGTTGACGGGGGCGA
195 AGGCGCAAGTGCG-ATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
*
3283 TCATACCAGCACTAATGCTCCGGATCCCATCAGAACTCCGCAGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
*** * *
3327 TAAGCGCATTTGGGCGAGAGTAGAACTAGGATGGATGACCTCCTGGGAAGTCCTCGTGTTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* *
3392 CCTCCCATTTTATTTCCTATAATGTTTTTTGTTAGTTGCATTTTCTCCACGTGGTGTAACCCATT
66 CCTCCCATTTTATTTCATATAAT-TTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
* * * *
3457 CGATATTTGCGTTTTACGAAATAGATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTT
129 CGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
* *
3522 GAGGCGCAAATGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGA
194 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
*
3587 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCTGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* * * * *
3631 CAAGCGTGCGTGGGCGAGAGTAGTACTAGGATGGGTAACCTCCGGGGAAGTCCTCGTATTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* * *
3696 CCTCCCATTTTATTTCATATAATTTTTATTT-GTTGCATTTTCTTCACATGGTGTAACTCATTCG
66 CCTCCCATTTTATTTCATATAATTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCG
* *
3760 TTATTTGCGTTTTGCGAGATAAATAATTTGAAACGATATTTGGTCGAATCTGCATTAAAATTCGA
131 TTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGA
* ** * * * * * *
3825 GGCGTATTTGCGATAAGTGCCAACCTTTATATGAGTAGATTACACAAGAGTTGACGGGTGCGATT
196 GGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATC
* * ** *
3890 ATACTAGCCCTAATGCATAGGGTCCCATCAGAACTCCGCA-T
261 ATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* * * * * *
3931 TGAAGCGTGCTTGGGCGAGAGTAGTACGAGGATGGGTGACCTGCTGGGAAGTCTTGGTGCTGTAC
1 T-AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
* *
3996 CCCTCCCATTTTATTTCATATAATATTTTTTTAGTCGCATTTTCTCCACGTGGTGTAACTCATTC
65 CCCTCCCATTTTATTTCATATAATTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
* * *
4061 GTTATTTGCGTTATGCGAAATAAATAATTTGAAACGATATTCGGTCGAATTTGAATTAAAATTCG
130 GTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCG
* * * *
4126 AGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGATTAGATTGCGCAAGGGTTGACGCGTGCGAT
195 AGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGAT
* * *
4191 CATACCAGCACTAATGCACCGGATCCCATCAAAACGCCGTAGT
260 CATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* * * *
4234 TAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTTGGAAGTCCTCGTATTGTACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
*
4299 CCTCCCATTTTATTTCATATAA--TTTTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCG
66 CCTCCCATTTTATTTCATATAATTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCG
* * *
4362 TTACTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTAGTCGAATTTGCATTAAAATTTGA
131 TTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGA
** * * * *
4427 GGCGCATTTGCGATAAGGGGCAACCTTTATATGAATAGCTTGCACAAGAGTTGATGGGTGTGATC
196 GGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATC
* * *
4492 ATACTAGCACTAATGCATCGGATCCCATCAGAACTCTGCA-T
261 ATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* * *
4533 TGAAGCGTGCTTGGGCGAGAGTAGTACGAGGATGAGTGACCTCCTAGGAAGTCCTCGTGTTGCAC
1 T-AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
* * *
4598 CCCTGCCATTTTATATCATATAATATTTTTTTTGGTTGCATTTTCTCCACGTGGTGTAACTCATT
65 CCCTCCCATTTTATTTCATATAAT-TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
* * **
4663 CGTTATTCGCGTTTTGCGAAATAAATAATTTAAAACGATATTTGGTCGAATTTGCATCCAAATTC
129 CGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
* * * * * *
4728 GAGGCGCAAGTGCGATAAGGGGCATCCTTTATATCATTAGATTGCACAAGAGTTGATGGGAGCTA
194 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
* * **
4793 TGATACCAGCACTAATGTACCGGATCCCATCAGAACTCTACAGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
** * * *
4837 TAAGCGTGCTTGGATGAGAGTAGTACTAGGATGGGTGGCCTCCTAGGAGGTCCTCGTGTTGCACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* * *
4902 CCTCCCATTTTATTTCATATAATATTTTTATTT-GCTGCATTTTCTTCACGTGGTGTAACTTATT
66 CCTCCCATTTTATTTCATATAAT-TTTTT-TTTAGTTGCATTTTCTCCACGTGGTGTAACTCATT
* * ** *
4966 CGTTATTTGCGTTCTACGAAATACCTAATTTGAAACGATATTTTGTCGAATTTGCATTAAAATTC
129 CGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTC
* ** * * * *
5031 GAGCCGCATTTGCGATAAGTGCCAACCTTTATATGAATAGATTGCACAAGAGTTGATGGGTGCGA
194 GAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGA
* * *
5096 TCATACTAGCACTAATGCATCGGATCCCATCAGAACTCCACAGT
259 TCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
* * * * * * *
5140 TAAGTGCGTTTGGGCGAGAGTAGTACGAGGATGGGTGACCTCCTGGGAAGTCCTCGCGTGGAACC
1 TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
* * * *
5205 CTTCCCATTTTATTTCATATAATATTTTTTGTAGTTGCATTTTCTTCACGTGGTGTAACTAATTC
66 CCTCCCATTTTATTTCATATAAT-TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
*
5270 CTTAT
130 GTTAT
5275 ATGAATGGAT
Statistics
Matches: 4467, Mismatches: 472, Indels: 64
0.89 0.09 0.01
Matches are distributed among these distances:
298 139 0.03
299 122 0.03
300 537 0.12
301 525 0.12
302 537 0.12
303 1371 0.31
304 1233 0.28
305 3 0.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (302 bp):
TAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
CCTCCCATTTTATTTCATATAATTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCG
TTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGA
GGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATC
ATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
Found at i:5494 original size:252 final size:252
Alignment explanation
Indices: 5041--5526 Score: 670
Period size: 252 Copynumber: 1.9 Consensus size: 252
5031 GAGCCGCATT
* * *
5041 TGCGATAAGTGCCAACCTTTATATGAATAGATTGCACAAGAGTTGATGGGTGCGATCATACTAGC
1 TGCGATAAGGGCCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGC
* * * *
5106 ACTAATGCATCGGATCCCATCAGAACTCCACAGTTAAGTGCGTTTGGGCGAGAGTAGTACGAGGA
66 ACTAATGCACCGGATCCCATCAGAACTCCACAGTGAAGCGCGCTTGGGCGAGAGTAGTACGAGGA
* *
5171 TGGGTGACCTCCTGGGAAGTCCTCGCGTGGAACCCTTCCCATTTTATTTCATATAATATTTTTTG
131 TGGGTGACATCCTGGGAAGTCCTCGCGTGGAACCCATCCCATTTTATTTCATATAATATTTTTTG
* * *
5236 TAGTTGCATTTTCTTCACGTGGTGTAACTAATTCCTTATATGAATGGATTGCGCAAG
196 TAGTTGCATTTTCTCCACGTGGTCTAACTAATTCATTATATGAATGGATTGCGCAAG
* * * * * *
5293 TGCGATAAGGGGCAGCCTTTATATGAATGGATTGCGCAAGAGTTGACGGGTGCTATCATACCAGG
1 TGCGATAAGGGCCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGC
* * * * *
5358 ACTAATGCACCGGATCCTATTCA-AA-TGCCGCAGTGAAGCGTGCTTGGGCGAGAGTATTACTAG
66 ACTAATGCACCGGATCCCA-TCAGAACT-CCACAGTGAAGCGCGCTTGGGCGAGAGTAGTACGAG
* * * * *
5421 GGTGGGTGACATCCTGGGAAGTCCTCGTGTTGCACCCATCCCATTTTATTTCATATAATGTTTTT
129 GATGGGTGACATCCTGGGAAGTCCTCGCGTGGAACCCATCCCATTTTATTTCATATAATATTTTT
* *
5486 TTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTAT
194 TGTAGTTGCATTTTCTCCACGTGGTCTAACTAATTCATTAT
5527 TTGCGTTTTG
Statistics
Matches: 202, Mismatches: 30, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
251 1 0.00
252 198 0.98
253 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (252 bp):
TGCGATAAGGGCCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGC
ACTAATGCACCGGATCCCATCAGAACTCCACAGTGAAGCGCGCTTGGGCGAGAGTAGTACGAGGA
TGGGTGACATCCTGGGAAGTCCTCGCGTGGAACCCATCCCATTTTATTTCATATAATATTTTTTG
TAGTTGCATTTTCTCCACGTGGTCTAACTAATTCATTATATGAATGGATTGCGCAAG
Found at i:5999 original size:300 final size:300
Alignment explanation
Indices: 5290--6473 Score: 1703
Period size: 300 Copynumber: 3.9 Consensus size: 300
5280 TGGATTGCGC
* * * *
5290 AAGTGCGATAAGGGGCAGCCTTTATATGAATGGATTGCGCAAGAGTTGACGGGTGCTATCATACC
1 AAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGAGCGATCATACC
* * * * * * * *
5355 AGGACTAATGCACCGGATCCTATTCAAATGCCGCAGTGAAGCGTGCTTGGGCGAGAGTATTACTA
66 AGCACTAATGCACCGCATCCCATTGAACT-CCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTA
* * * *
5420 GGGTGGGTGACATCCTGGGAAGTCCTCGTGTTGCACCCATCCCATTTTATTTCATATAATGTTTT
130 GGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAA--TTTT
*
5485 TTTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGATATAAATAAT
193 TTTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGAAATAAATAAT
* * * * * *
5550 TTGAAACAATATTTGGACGAATTTGCATTCAAATTCGAGGCGC
258 TTGAAACGATATTTGGTCGAAATTGCATTGAAATTTGAGGCGT
* *
5593 AAGTGCGATAA-GGGCAGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTA-CGATCATAC
1 AAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGG-AGCGATCATAC
* *
5656 CAGCACTAATGCACTGCATCCCATCTGAACTCCGTAGTCAAGCGTGCCTGGGCGAGAGTAGTACT
65 CAGCACTAATGCACCGCATCCCAT-TGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACT
*
5721 AGGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCGTATAA-TTTT
129 AGGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATTTTT
* * * *
5785 TTTAGTTGGATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGAGTTTTGCGAAATAAATAATT
194 TTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGAAATAAATAATT
*
5850 TGAAATGATATTTGGTCGAAATTGCATTGAAATTTGAGGCGT
259 TGAAACGATATTTGGTCGAAATTGCATTGAAATTTGAGGCGT
5892 AAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGAGCGATCATACC
1 AAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGAGCGATCATACC
* * * *
5957 AGCACTAATGCACTGCATCCCATCTGACCTCCGTAGTCAAGCGTGCCTGGGCGAGAGGAGTACTA
66 AGCACTAATGCACCGCATCCCAT-TGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTA
*
6022 GGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCGTATAA-TTTTT
130 GGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATTTTTT
* * * * *
6086 TTAGTTGGATTTTCTCCACGTGGTGTAACTCATTCGTTTTTTGCGTTGTGCGAAATAAATAATTT
195 TTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGAAATAAATAATTT
*
6151 GAAATGATATTTGGTCGAAATTGCATTGAAATTTGAGGCGT
260 GAAACGATATTTGGTCGAAATTGCATTGAAATTTGAGGCGT
*
6192 AAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACC
1 AAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGAGCGATCATACC
* * * * * * *
6257 AGCACTAATGCACCGGATCCCATTCAAACGCCGCAGTTAAACGTG-CTTGGCTGAGAGTAATACT
66 AGCACTAATGCACCGCATCCCATT-GAACTCCGCAGTCAAGCGTGCCTGGGC-GAGAGTAGTACT
* *
6321 AGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACTCCTCCCATTTTATTTCATATAATGTTT
129 AGGATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAA--TTT
* * * *
6386 TTTGTTAGTTGCATTTTCTCCATGTGGTCTAACTCATTTATTATTTGCGTTATGTGAAATAAATA
192 TTT-TTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGAAATAAATA
*
6451 ATTTGAAACGATATTCGGTCGAA
256 ATTTGAAACGATATTTGGTCGAA
6474 T
Statistics
Matches: 807, Mismatches: 64, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
299 117 0.14
300 445 0.55
302 151 0.19
303 20 0.02
304 74 0.09
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (300 bp):
AAGTGCGATAAGGGGCAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGAGCGATCATACC
AGCACTAATGCACCGCATCCCATTGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAG
GATGGGTGACCTCCTGGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATTTTTTT
TAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGAAATAAATAATTTG
AAACGATATTTGGTCGAAATTGCATTGAAATTTGAGGCGT
Done.