Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3190

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 472

Length: 787
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38


Found at i:202 original size:16 final size:16

Alignment explanation


    Indices: 183--221  Score: 60
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        173 ATAGCTTTTT

                         *  
        183 CATTACACCTCTATTC
          1 CATTACACCTCTAATC

                            
        199 CATTACACCTCTAATC
          1 CATTACACCTCTAATC

              *    
        215 CAATACA
          1 CATTACA

        222 GCTAACCAAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  16   21  1.00

ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31


Consensus pattern (16 bp):   
CATTACACCTCTAATC
Done.